RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5892
(340 letters)
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1
domain-containing proteins [Cell division and chromosome
partitioning / Cytoskeleton].
Length = 476
Score = 100 bits (251), Expect = 1e-23
Identities = 77/293 (26%), Positives = 128/293 (43%), Gaps = 35/293 (11%)
Query: 3 KITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLP 62
++ +ACG+ +V+ T D + +G + G + +K + P
Sbjct: 177 RVVKLACGWEISVILTA--DGRVYSWGTFRCGELGQGSYKNSQKTS---------IQFTP 225
Query: 63 VKHPSTQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADL 122
+K P I LA G H I +T+ + +G+N GQ GR + + D
Sbjct: 226 LKVPKKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVL-----VGDP 280
Query: 123 EGEKIMDAV-CGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLV-----RGEIE 176
+ + V CG+DH+L L E G++Y+ G GQ LG ++ E L + +
Sbjct: 281 FAIRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQ--LGAGSDGEIGALTTKPNYKQLLS 338
Query: 177 GERIVKLSSAVDCVLAVSDKGDVFGWGNSEYGQI---SESEMQISTPRVLSQCKGVSRIV 233
G I +S+ L + G ++ +G + GQ+ E + +STP LS + ++
Sbjct: 339 GVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLSVAIKLEQV- 397
Query: 234 DVASGGSACTML-NDEGLVYSWG---YGLLGQGPKVSRSMKPTLIPSTLFGQH 282
+ G+ + D+G VYSWG +G LG GPK + + PTLI L H
Sbjct: 398 ---ACGTHHNIARTDDGSVYSWGWGEHGNLGNGPKEADVLVPTLIRQPLLSGH 447
Score = 93.0 bits (231), Expect = 6e-21
Identities = 73/340 (21%), Positives = 126/340 (37%), Gaps = 32/340 (9%)
Query: 1 MIKITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGY---------HDPRKKGNPLE 51
I IACG ++ + L+ G N D LG ++ + E
Sbjct: 103 KASIIKIACGGNHSLGLDHDGN----LYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYE 158
Query: 52 LVMSFVRIPL-PVKHPSTQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDY 110
L + ++P ++ LA G ++++T + +++G +CG
Sbjct: 159 LESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTF---RCGELGQGSYKN 215
Query: 111 QGKWFCHNIADLEGEK-IMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPC 169
K +K I+ G DH + LT GKVY G GQ G +
Sbjct: 216 SQKTSIQFTPLKVPKKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVV 275
Query: 170 LVRGEIEGERIVKLSSAVDCVLAVSDKGDVFGWGNSEYGQISESEMQISTPRVL-SQCKG 228
LV I ++ D LA+ + G+++ WG + +GQ+ K
Sbjct: 276 LVGDPFAIRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQ 335
Query: 229 VS---RIVDVASGGSACTMLNDEGLVYSWGYGLLGQ--GPKVSRSMKPTLIPSTLFGQHQ 283
+ I +++G S +L +G +Y++G G GQ + T ++
Sbjct: 336 LLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLSVAI--- 392
Query: 284 FNPKSKVESLIAGPCTFGAITNFGHLYMWGKNQYGQLGLG 323
K+E + G A T+ G +Y WG ++G LG G
Sbjct: 393 -----KLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNG 427
Score = 87.6 bits (217), Expect = 3e-19
Identities = 78/345 (22%), Positives = 143/345 (41%), Gaps = 41/345 (11%)
Query: 18 TKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLPVKHPSTQIKHLATGR 77
T K ++ G N ++LG E + ++ + I +A G
Sbjct: 61 THLLVKMASVYSWGSNGMNELGL-------GNDETKVDRPQLNPFGRIDKASIIKIACGG 113
Query: 78 AHTIVITDNEGAFTFGNNSFGQCGRGI---VQEEDYQGKWFCHNIADLEG---------- 124
H++ + + +++G+N G GR I + +++ F +LE
Sbjct: 114 NHSLGLDHDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDY--ELESTPFKVPGGSS 171
Query: 125 ----EKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNN------QETPCLVRGE 174
+++ CG + ++ LT G+VYS G G+ G G N Q TP V
Sbjct: 172 AKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKV--- 228
Query: 175 IEGERIVKLSSAVDCVLAVSDKGDVFGWGNSEYGQISESEM-QISTPRVLSQCKGVSRIV 233
+ IV+L++ D ++A++++G V+GWG+++ GQ+ ++ ++ + I
Sbjct: 229 -PKKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIRNIK 287
Query: 234 DVASGGSACTMLNDEGLVYSWGYGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESL 293
VA G L+++G +Y+WG + GQ S L + Q + S+
Sbjct: 288 YVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQL--LSGVTICSI 345
Query: 294 IAGPCTFGAITNFGHLYMWGKNQYGQLGLGT--VEDQPFPLKVAV 336
AG + G LY +G+ GQLG+ D P K++V
Sbjct: 346 SAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLSV 390
Score = 80.3 bits (198), Expect = 1e-16
Identities = 67/289 (23%), Positives = 110/289 (38%), Gaps = 33/289 (11%)
Query: 65 HPSTQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEG 124
P K HT ++ +++G+N + G G +E + + ++
Sbjct: 46 IPWIIRKVAQIINKHTHLLVKMASVYSWGSNGMNELGLG--NDETKVDRPQLNPFGRIDK 103
Query: 125 EKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTG---------------LGHLNNQE-TP 168
I+ CG +H+L L G +YS G DG G E TP
Sbjct: 104 ASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTP 163
Query: 169 CLVRGEIEG---ERIVKLSSAVDCVLAVSDKGDVFGWGNSEYGQISESEMQISTPRVLS- 224
V G R+VKL+ + + ++ G V+ WG G++ + + S +
Sbjct: 164 FKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQF 223
Query: 225 -QCK-GVSRIVDVASGGSACTMLNDEGLVYSWGYGLLGQ-GPKVSRSMK-PTLIPSTLFG 280
K IV +A+G L +EG VY WG GQ G S +K L+
Sbjct: 224 TPLKVPKKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPFAI 283
Query: 281 QHQFNPKSKVESLIAGPCTFGAITNFGHLYMWGKNQYGQLGLGTVEDQP 329
++ ++ + G A+ G +Y WG N +GQLG G+ +
Sbjct: 284 RN-------IKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIG 325
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1)
repeat.
Length = 50
Score = 43.7 bits (104), Expect = 3e-06
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 307 GHLYMWGKNQYGQLGLGTVEDQPFPLKV 334
G +Y WG+N+YGQLGLG ED P V
Sbjct: 2 GRVYTWGRNEYGQLGLGDEEDVLVPQLV 29
Score = 42.9 bits (102), Expect = 4e-06
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 143 SGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSAVDCVLAV 193
G+VY+ G GQ GLG + P LV G + G R+V+++ +A+
Sbjct: 1 DGRVYTWGRNEYGQLGLGDEEDVLVPQLVEG-LSGVRVVQVACGASHTVAL 50
Score = 36.7 bits (86), Expect = 8e-04
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Query: 90 FTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQDHTLFL 140
+T+G N +GQ G G D + + L G +++ CG HT+ L
Sbjct: 5 YTWGRNEYGQLGLG-----DEEDVLVPQLVEGLSGVRVVQVACGASHTVAL 50
Score = 36.3 bits (85), Expect = 8e-04
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 196 KGDVFGWGNSEYGQISE-SEMQISTPRVLSQCKGVSRIVDVASGGS 240
G V+ WG +EYGQ+ E + P+++ GV R+V VA G S
Sbjct: 1 DGRVYTWGRNEYGQLGLGDEEDVLVPQLVEGLSGV-RVVQVACGAS 45
Score = 30.2 bits (69), Expect = 0.14
Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 10/58 (17%)
Query: 26 KLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLPVKHPSTQIKHLATGRAHTIVI 83
+++ G N QLG D P + Q+ A G +HT+ +
Sbjct: 3 RVYTWGRNEYGQLGLGDEEDVLVP-------QLVEGLSGVRVVQV---ACGASHTVAL 50
Score = 29.0 bits (66), Expect = 0.37
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 248 EGLVYSWGY---GLLGQGPKVSRSMKPTLIPS 276
+G VY+WG G LG G + P L+
Sbjct: 1 DGRVYTWGRNEYGQLGLGDEEDVL-VPQLVEG 31
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1)
repeat.
Length = 30
Score = 39.4 bits (93), Expect = 5e-05
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 132 CGQDHTLFLTESGKVYSCGWGADGQ 156
G HTL LT G VY G + GQ
Sbjct: 6 AGDYHTLALTSDGTVYCWGDNSYGQ 30
Score = 36.3 bits (85), Expect = 6e-04
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 70 IKHLATGRAHTIVITDNEGAFTFGNNSFGQ 99
+ +A G HT+ +T + + +G+NS+GQ
Sbjct: 1 VVSIAAGDYHTLALTSDGTVYCWGDNSYGQ 30
Score = 30.9 bits (71), Expect = 0.056
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 232 IVDVASGGSACTMLNDEGLVYSWGYGLLGQ 261
+V +A+G L +G VY WG GQ
Sbjct: 1 VVSIAAGDYHTLALTSDGTVYCWGDNSYGQ 30
Score = 30.2 bits (69), Expect = 0.099
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 180 IVKLSSAVDCVLAVSDKGDVFGWGNSEYGQ 209
+V +++ LA++ G V+ WG++ YGQ
Sbjct: 1 VVSIAAGDYHTLALTSDGTVYCWGDNSYGQ 30
Score = 28.2 bits (64), Expect = 0.54
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 290 VESLIAGPCTFGAITNFGHLYMWGKNQYGQ 319
V S+ AG A+T+ G +Y WG N YGQ
Sbjct: 1 VVSIAAGDYHTLALTSDGTVYCWGDNSYGQ 30
Score = 27.8 bits (63), Expect = 0.73
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 4/34 (11%)
Query: 4 ITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQ 37
+ IA G T+ T ++ G NS Q
Sbjct: 1 VVSIAAGDYHTLALTSDG----TVYCWGDNSYGQ 30
>gnl|CDD|236394 PRK09169, PRK09169, hypothetical protein; Validated.
Length = 2316
Score = 30.1 bits (68), Expect = 2.4
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 170 LVRGEIEGERIVKLSSAVDCVLAVSDKGDVF 200
L G IEG + + SA D + ++K VF
Sbjct: 1357 LTGGGIEGVQGRAVPSADDKLHLPTEKSQVF 1387
>gnl|CDD|214839 smart00828, PKS_MT, Methyltransferase in polyketide synthase
(PKS) enzymes.
Length = 224
Score = 28.5 bits (64), Expect = 3.7
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 3 KITDIACGYGFTVVATKSKDKNLKLFGCGLNSD 35
++ D CGYG ++ + +L+L G ++ +
Sbjct: 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPE 34
>gnl|CDD|173789 cd04059, Peptidases_S8_Protein_convertases_Kexins_Furin-like,
Peptidase S8 family domain in Protein convertases.
Protein convertases, whose members include furins and
kexins, are members of the peptidase S8 or Subtilase
clan of proteases. They have an Asp/His/Ser catalytic
triad that is not homologous to trypsin. Kexins are
involved in the activation of peptide hormones, growth
factors, and viral proteins. Furin cleaves cell surface
vasoactive peptides and proteins involved in
cardiovascular tissue remodeling in the TGN, at cell
surface, or in endosomes but rarely in the ER. Furin
also plays a key role in blood pressure regulation
though the activation of transforming growth factor
(TGF)-beta. High specificity is seen for cleavage after
dibasic (Lys-Arg or Arg-Arg) or multiple basic residues
in protein convertases. There is also strong sequence
conservation.
Length = 297
Score = 28.7 bits (65), Expect = 4.9
Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 10/62 (16%)
Query: 93 GNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQDHTLFLTESGKVYSCGWG 152
GNN G CG G+ K + D + D V + L + +YS WG
Sbjct: 98 GNN--GICGVGVA----PGAKLGGIRMLD---GDVTDVVEAESLGLNP-DYIDIYSNSWG 147
Query: 153 AD 154
D
Sbjct: 148 PD 149
>gnl|CDD|219665 pfam07959, Fucokinase, L-fucokinase. In the salvage pathway of
GDP-L-fucose, free cytosolic fucose is phosphorylated by
L-fucokinase to form L-fucose-L-phosphate, which is then
further converted to GDP-L-fucose in the reaction
catalyzed by GDP-L-fucose pyrophosphorylase.
Length = 414
Score = 28.6 bits (64), Expect = 5.5
Identities = 22/96 (22%), Positives = 33/96 (34%), Gaps = 19/96 (19%)
Query: 8 ACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMS-----------F 56
G FT + + D + L G L Y + P LV S
Sbjct: 13 PLGKIFTPLPVLAPDGPVPLLGDNLLELKLAMYQRFPPQMPPGVLVTSGDELLSVGDAPG 72
Query: 57 VRIPLP----VKHPSTQIKHLATGRAHTIVITDNEG 88
+ P + HPS+ LA H + +TD++G
Sbjct: 73 ISFDEPGATALAHPSS----LAIATNHGVFVTDSQG 104
>gnl|CDD|201553 pfam01016, Ribosomal_L27, Ribosomal L27 protein.
Length = 80
Score = 26.3 bits (59), Expect = 5.9
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 132 CGQDHTLFLTESGKV 146
G+DHTLF G V
Sbjct: 52 MGKDHTLFALVDGYV 66
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.137 0.426
Gapped
Lambda K H
0.267 0.0678 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,677,322
Number of extensions: 1537854
Number of successful extensions: 1094
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1063
Number of HSP's successfully gapped: 25
Length of query: 340
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 242
Effective length of database: 6,590,910
Effective search space: 1595000220
Effective search space used: 1595000220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.6 bits)