RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5892
(340 letters)
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor,
tryptophan chromophores, homodimer, COP1,
chromatin-binding protein; 1.70A {Arabidopsis thaliana}
PDB: 4dnw_A 4dnu_A 4dnv_A
Length = 406
Score = 205 bits (523), Expect = 4e-63
Identities = 87/337 (25%), Positives = 146/337 (43%), Gaps = 35/337 (10%)
Query: 3 KITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLP 62
+I + CG TV ++S ++++ G +LG+ GN + + PLP
Sbjct: 69 QIVSVTCGADHTVAYSQS---GMEVYSWGWGDFGRLGH------GNSSD-----LFTPLP 114
Query: 63 VKHPS-TQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIAD 121
+K +IK +A G +H + +T ++G N GQ G G D + I
Sbjct: 115 IKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLG-----DTEDSLVPQKIQA 169
Query: 122 LEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIV 181
EG +I G +HT +TE G +Y GWG G GLG ++ P V GE++
Sbjct: 170 FEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTS-TGGEKMS 228
Query: 182 KLSSAVDCVLAVSDKGDVFGWGNSEYGQISESEMQ-ISTPRVLSQCKGVSRIVDVASGGS 240
++ ++VS G ++ +G S+YGQ+ +++ P L S I ++ G
Sbjct: 229 MVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSN-SFISQISGGWR 287
Query: 241 ACTMLNDEGLVYSWG---YGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGP 297
L +G +Y WG +G +G G + + P + KV + G
Sbjct: 288 HTMALTSDGKLYGWGWNKFGQVGVGNNLDQC-SPVQVRFP--------DDQKVVQVSCGW 338
Query: 298 CTFGAITNFGHLYMWGKNQYGQLGLGTVEDQPFPLKV 334
A+T +++ WG+ GQLG+G D+ FP +
Sbjct: 339 RHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKII 375
Score = 195 bits (499), Expect = 1e-59
Identities = 86/338 (25%), Positives = 139/338 (41%), Gaps = 37/338 (10%)
Query: 3 KITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLP 62
K+ I+ G +V + G D QLG+ D P
Sbjct: 17 KVLIISAGASHSVALLSGDI----VCSWGRGEDGQLGHGD-----------AEDRPSPTQ 61
Query: 63 VKHPS-TQIKHLATGRAHTIVITDNEGA-FTFGNNSFGQCGRGIVQEEDYQGKWFCHNIA 120
+ QI + G HT+ + + +++G FG+ G G + + I
Sbjct: 62 LSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHG-----NSSDLFTPLPIK 116
Query: 121 DLEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERI 180
L G +I CG H L +T G+V S G +GQ GLG + P ++ EG RI
Sbjct: 117 ALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQA-FEGIRI 175
Query: 181 VKLSSAVDCVLAVSDKGDVFGWGNSEYGQI-SESEMQISTPRVLSQCKGVSRIVDVASGG 239
+++ + AV++ GD++GWG YG + P ++ G ++ VA G
Sbjct: 176 KMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGE-KMSMVACGW 234
Query: 240 SACTMLNDEGLVYSWG---YGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAG 296
++ G +Y++G YG LG G P + + L S + + G
Sbjct: 235 RHTISVSYSGALYTYGWSKYGQLGHGDLEDHL-IPHKLEA-LSN-------SFISQISGG 285
Query: 297 PCTFGAITNFGHLYMWGKNQYGQLGLGTVEDQPFPLKV 334
A+T+ G LY WG N++GQ+G+G DQ P++V
Sbjct: 286 WRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQV 323
Score = 175 bits (446), Expect = 1e-51
Identities = 79/276 (28%), Positives = 138/276 (50%), Gaps = 23/276 (8%)
Query: 66 PSTQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGE 125
P ++ ++ G +H++ + + ++G GQ G G D + + ++ L+G
Sbjct: 14 PPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHG-----DAEDRPSPTQLSALDGH 68
Query: 126 KIMDAVCGQDHTLFLTESG-KVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLS 184
+I+ CG DHT+ ++SG +VYS GWG G+ G G+ ++ TP ++ + G RI +++
Sbjct: 69 QIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKA-LHGIRIKQIA 127
Query: 185 SAVDCVLAVSDKGDVFGWGNSEYGQI-SESEMQISTPRVLSQCKGVSRIVDVASGGSACT 243
LAV+ +G+V WG ++ GQ+ P+ + +G+ RI VA+G
Sbjct: 128 CGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGI-RIKMVAAGAEHTA 186
Query: 244 MLNDEGLVYSWG---YGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGP-CT 299
+ ++G +Y WG YG LG G + R P + ST K+ + G T
Sbjct: 187 AVTEDGDLYGWGWGRYGNLGLGDRTDRL-VPERVTST--------GGEKMSMVACGWRHT 237
Query: 300 FGAITNFGHLYMWGKNQYGQLGLGTVEDQPFPLKVA 335
+++ G LY +G ++YGQLG G +ED P K+
Sbjct: 238 I-SVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLE 272
Score = 172 bits (438), Expect = 1e-50
Identities = 71/318 (22%), Positives = 125/318 (39%), Gaps = 38/318 (11%)
Query: 2 IKITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPL 61
I+I IACG + T ++ G N + QLG D P +I
Sbjct: 121 IRIKQIACGDSHCLAVTMEG----EVQSWGRNQNGQLGLGDTEDSLVP-------QKIQA 169
Query: 62 PVKHPSTQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIAD 121
+IK +A G HT +T++ + +G +G G G D + +
Sbjct: 170 F---EGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLG-----DRTDRLVPERVTS 221
Query: 122 LEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIV 181
GEK+ CG HT+ ++ SG +Y+ GW GQ G G L + P + + I
Sbjct: 222 TGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEA-LSNSFIS 280
Query: 182 KLSSAVDCVLAVSDKGDVFGWGNSEYGQI-SESEMQISTPRVLSQCKGVSRIVDVASGGS 240
++S +A++ G ++GWG +++GQ+ + + +P + ++V V+ G
Sbjct: 281 QISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDD-QKVVQVSCGWR 339
Query: 241 ACTMLNDEGLVYSWG---YGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGP 297
+ + V++WG G LG G V R+ P +I ++ +G
Sbjct: 340 HTLAVTERNNVFAWGRGTNGQLGIGESVDRN-FPKII------------EALSVDGASGQ 386
Query: 298 CTFGAITNFGHLYMWGKN 315
+ + W
Sbjct: 387 HIESSNIDPSSGKSWVSP 404
Score = 124 bits (314), Expect = 1e-32
Identities = 48/207 (23%), Positives = 87/207 (42%), Gaps = 27/207 (13%)
Query: 2 IKITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPL 61
K++ +ACG+ T+ + S L+ G + QLG+ D + IP
Sbjct: 225 EKMSMVACGWRHTISVSYSG----ALYTYGWSKYGQLGHGD-----------LEDHLIPH 269
Query: 62 PVKHPS-TQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIA 120
++ S + I ++ G HT+ +T + + +G N FGQ G G + + +
Sbjct: 270 KLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVG-----NNLDQCSPVQVR 324
Query: 121 DLEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERI 180
+ +K++ CG HTL +TE V++ G G +GQ G+G ++ P ++
Sbjct: 325 FPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEA-----LS 379
Query: 181 VKLSSAVDCVLAVSDKGDVFGWG-NSE 206
V +S + D W +E
Sbjct: 380 VDGASGQHIESSNIDPSSGKSWVSPAE 406
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural
genomics consortium, SGC, coiled coil, metal-binding,
phosphoprotein; 1.80A {Homo sapiens}
Length = 389
Score = 197 bits (502), Expect = 3e-60
Identities = 77/340 (22%), Positives = 127/340 (37%), Gaps = 34/340 (10%)
Query: 1 MIKITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIP 60
++ + G T KL+ G + +LG P +
Sbjct: 52 TLRPVQLIGGEQTLFAVTADG----KLYATGYGAGGRLGIGGTESVSTP-------TLLE 100
Query: 61 LPVKHPSTQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIA 120
++ + +G H + ++ +++G G+ G G + I
Sbjct: 101 SIQHVFIKKV-AVNSGGKHCLALSSEGEVYSWGEAEDGKLGHG-----NRSPCDRPRVIE 154
Query: 121 DLEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERI 180
L G +++D G H+ +T +G +Y+ G G G+ G +Q P LV ++G R+
Sbjct: 155 SLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEA-LQGHRV 213
Query: 181 VKLS--SAVDCVLAVSDKGDVFGWGNSEYGQI-SESEMQISTPRVLSQCKGVSRIVDVAS 237
V ++ S L ++D V+ WG+ +YG++ P + G+ +V V
Sbjct: 214 VDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGL-GVVKVEC 272
Query: 238 GGSACTMLNDEGLVYSWG---YGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLI 294
G L G VY+WG Y LG G +P + L G KV ++
Sbjct: 273 GSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVR-RPRQVQG-LQG-------KKVIAIA 323
Query: 295 AGPCTFGAITNFGHLYMWGKNQYGQLGLGTVEDQPFPLKV 334
G T G +Y WG N GQLG GT P V
Sbjct: 324 TGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLV 363
Score = 188 bits (481), Expect = 4e-57
Identities = 81/337 (24%), Positives = 136/337 (40%), Gaps = 40/337 (11%)
Query: 7 IACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLPVKHP 66
+ S ++G G N QLG + + V++P P +
Sbjct: 6 HHSSGRENLYFQGSGT----IYGWGHNHRGQLGGIE-----------GAKVKVPTPCEAL 50
Query: 67 S-TQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGE 125
+ + L G +T + + G + G+ G G + + ++
Sbjct: 51 ATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTL-----LESIQHV 105
Query: 126 KI--MDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKL 183
I + G H L L+ G+VYS G DG+ G G+ + + P ++ + G +V +
Sbjct: 106 FIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIES-LRGIEVVDV 164
Query: 184 SSAVDCVLAVSDKGDVFGWGNSEYGQI-SESEMQISTPRVLSQCKGVSRIVDVA-SGGSA 241
++ V+ GD++ WG YG++ P+++ +G R+VD+A G A
Sbjct: 165 AAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGH-RVVDIACGSGDA 223
Query: 242 CTM-LNDEGLVYSWG---YGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGP 297
T+ L D+ V+SWG YG LG+G P I S L G V + G
Sbjct: 224 QTLCLTDDDTVWSWGDGDYGKLGRGGSDGCK-VPMKIDS-LTGL-------GVVKVECGS 274
Query: 298 CTFGAITNFGHLYMWGKNQYGQLGLGTVEDQPFPLKV 334
A+T G +Y WGK Y +LG G+ + P +V
Sbjct: 275 QFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQV 311
Score = 165 bits (421), Expect = 3e-48
Identities = 69/275 (25%), Positives = 122/275 (44%), Gaps = 24/275 (8%)
Query: 69 QIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIM 128
H + + + + +G+N GQ G + L + +
Sbjct: 2 HHHHHHSSGRENLYFQGSGTIYGWGHNHRGQLGGI-----EGAKVKVPTPCEALATLRPV 56
Query: 129 DAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSAVD 188
+ G+ +T GK+Y+ G+GA G+ G+G + TP L+ I+ I K+ AV+
Sbjct: 57 QLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLES-IQHVFIKKV--AVN 113
Query: 189 C----VLAVSDKGDVFGWGNSEYGQI-SESEMQISTPRVLSQCKGVSRIVDVASGGSACT 243
LA+S +G+V+ WG +E G++ + PRV+ +G+ +VDVA+GG+
Sbjct: 114 SGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGI-EVVDVAAGGAHSA 172
Query: 244 MLNDEGLVYSWG---YGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPCTF 300
+ G +Y+WG YG LG + KP L+ + L G + + +G
Sbjct: 173 CVTAAGDLYTWGKGRYGRLGHSDSEDQL-KPKLVEA-LQGH----RVVDI-ACGSGDAQT 225
Query: 301 GAITNFGHLYMWGKNQYGQLGLGTVEDQPFPLKVA 335
+T+ ++ WG YG+LG G + P+K+
Sbjct: 226 LCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKID 260
Score = 115 bits (291), Expect = 2e-29
Identities = 41/197 (20%), Positives = 80/197 (40%), Gaps = 24/197 (12%)
Query: 2 IKITDIACGYG--FTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRI 59
++ DIACG G T+ T ++ G +LG ++
Sbjct: 211 HRVVDIACGSGDAQTLCLTDDD----TVWSWGDGDYGKLGRGG-----------SDGCKV 255
Query: 60 PLPVKHPS-TQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHN 118
P+ + + + + G ++ +T + +T+G + + G G
Sbjct: 256 PMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHG-----SDDHVRRPRQ 310
Query: 119 IADLEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGE 178
+ L+G+K++ G H + TE G+VY+ G +GQ G G N + P LV ++G+
Sbjct: 311 VQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAA-LQGK 369
Query: 179 RIVKLSSAVDCVLAVSD 195
++ +++ LA S
Sbjct: 370 KVNRVACGSAHTLAWST 386
Score = 79.2 bits (196), Expect = 1e-16
Identities = 34/142 (23%), Positives = 55/142 (38%), Gaps = 19/142 (13%)
Query: 2 IKITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPL 61
+ + + CG F+V TKS ++ G +LG+ P ++
Sbjct: 265 LGVVKVECGSQFSVALTKSGA----VYTWGKGDYHRLGHGSDDHVRRP-------RQVQG 313
Query: 62 PVKHPSTQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIAD 121
I ATG H + T++ +T+G+N GQ G G +A
Sbjct: 314 LQGKKVIAI---ATGSLHCVCCTEDGEVYTWGDNDEGQLGDG-----TTNAIQRPRLVAA 365
Query: 122 LEGEKIMDAVCGQDHTLFLTES 143
L+G+K+ CG HTL + S
Sbjct: 366 LQGKKVNRVACGSAHTLAWSTS 387
Score = 46.1 bits (110), Expect = 9e-06
Identities = 10/37 (27%), Positives = 11/37 (29%)
Query: 302 AITNFGHLYMWGKNQYGQLGLGTVEDQPFPLKVAVGG 338
G +Y WG N GQLG P
Sbjct: 15 YFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALA 51
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine
nucleotide exchange factor (GEF), GS histones, nucleus,
cell cycle; 1.90A {Saccharomyces cerevisiae}
Length = 473
Score = 195 bits (498), Expect = 8e-59
Identities = 70/365 (19%), Positives = 126/365 (34%), Gaps = 37/365 (10%)
Query: 1 MIKITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGY----------------HDPR 44
KI A G T+ + ++ G N LG
Sbjct: 66 EAKIISFAVGGMHTLALDEES----NVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDD 121
Query: 45 KKGNPLELVMSFVRIPLPVKHPSTQ---IKHLATGRAHTIVITDNEGAFTFGNNSFGQCG 101
+ G+ EL + +IP P + + LA + + N + +G +
Sbjct: 122 EDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGI 181
Query: 102 RGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGH 161
G ++ + + + I+ G+DH LFL E G V++ G G Q G
Sbjct: 182 LGF-YQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKV 240
Query: 162 LNNQETPCLVRGEIEGERIVKLSSAVDCVLAVSDKGDVFGWGNSEYGQI-----SESEMQ 216
+ L + ++S + A++ + WG +++GQ E
Sbjct: 241 MERFRLKTLDPRPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGAL 300
Query: 217 ISTPRVLSQCKGVSRIVDVASGGSACTMLNDEGLVYSWGYGLLGQ-GPKVSRSMKPTLIP 275
++ P+ L+ I +A+G +L+ +G +YS G + + G + T
Sbjct: 301 VTKPKRLALPDN-VVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKD 359
Query: 276 STLFGQHQFNPK-----SKVESLIAGPCTFGAITNFGHLYMWGKNQYGQLGLGTVEDQ-P 329
+ P K +S+ AG A+ G Y WG + +GLG ED
Sbjct: 360 VHGKARAVPLPTKLNNVPKFKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFEDDTE 419
Query: 330 FPLKV 334
P ++
Sbjct: 420 VPTRI 424
Score = 186 bits (474), Expect = 2e-55
Identities = 72/375 (19%), Positives = 125/375 (33%), Gaps = 59/375 (15%)
Query: 1 MIKITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIP 60
M I + Y ++ + L +F G S +LG K ++
Sbjct: 9 MSHIINAQEDYKHMYLSV----QPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPR 64
Query: 61 LPVKHPSTQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGK------- 113
K I A G HT+ + + +++G N G GR ++
Sbjct: 65 DEAK-----IISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSS 119
Query: 114 -----------------WFCHNIADLEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQ 156
EG K++ + + L +G+VY+ G +
Sbjct: 120 DDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNE 179
Query: 157 TGLGHLNN----QETPCLVRGEIEGERIVKLSSAVDCVLAVSDKGDVFGWGNSEYGQ--- 209
LG + Q+TP V IV+L+ D +L + ++G VF WGN + Q
Sbjct: 180 GILGFYQDKIKIQKTPWKVPT-FSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGR 238
Query: 210 -ISESEMQISTPRVLSQCKGVSRIVDVASGGSACTMLNDEGLVYSWG---YGLLGQGPKV 265
+ E + + G+ + +ASG + C L + + SWG +G G V
Sbjct: 239 KVMER---FRLKTLDPRPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDV 295
Query: 266 SRS---MKPTLIPSTLFGQHQFNPKSKVESLIAGPCTFGAITNFGHLYMWGKNQYGQLGL 322
KP + + S+ AG ++ G LY G+ ++G+
Sbjct: 296 EDGALVTKPKRLAL-PDN-------VVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGI 347
Query: 323 GTVEDQPFPLKVAVG 337
+ K G
Sbjct: 348 PKDNLPEYTYKDVHG 362
Score = 165 bits (420), Expect = 2e-47
Identities = 64/317 (20%), Positives = 109/317 (34%), Gaps = 52/317 (16%)
Query: 62 PVKHPS-TQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIA 120
H + I + H + F +G S + G G + + + +
Sbjct: 3 HHHHHHMSHIINAQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFL 62
Query: 121 DLEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGE------ 174
+ KI+ G HTL L E V+S G G G N +E + +
Sbjct: 63 PRDEAKIISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDE 122
Query: 175 ----------------------IEGERIVKLSSAVDCVLAVSDKGDVFGWGNSEYGQ--- 209
EG ++V+L++ + A+ G+V+ WG +
Sbjct: 123 DGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGIL 182
Query: 210 --ISESEMQISTPRVLSQCKGVSRIVDVASGGSACTMLNDEGLVYSWG---YGLLGQGPK 264
+ TP + IV +A G L++EG+V++WG LG+
Sbjct: 183 GFYQDKIKIQKTPWKVPTFSKY-NIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVM 241
Query: 265 VSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGP-CTFGAITNFGHLYMWGKNQYGQLGLG 323
+ TL P V+ + +G F A+T L WG NQ+GQ G+
Sbjct: 242 ERFRL-KTLDPRPFGL-------RHVKYIASGENHCF-ALTKDNKLVSWGLNQFGQCGVS 292
Query: 324 TVEDQ----PFPLKVAV 336
+ P ++A+
Sbjct: 293 EDVEDGALVTKPKRLAL 309
Score = 156 bits (397), Expect = 3e-44
Identities = 55/303 (18%), Positives = 106/303 (34%), Gaps = 36/303 (11%)
Query: 2 IKITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPL 61
K+ +A + + + +G ++ LG++ + K + P
Sbjct: 148 HKVVQLAATDNMSCALFS--NGEVYAWGTFRCNEGILGFYQDKIKI---------QKTPW 196
Query: 62 PVKHPS-TQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIA 120
V S I LA G+ H + + + F +GN Q GR +++ + +
Sbjct: 197 KVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLK----TLDPR 252
Query: 121 DLEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQET----PCLVRGEIE 176
+ G++H LT+ K+ S G GQ G+ P + +
Sbjct: 253 PFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLAL-PD 311
Query: 177 GERIVKLSSAVDCVLAVSDKGDVFGWGNSEYGQ------------ISESEMQISTPRVLS 224
I +++ L +S GD++ G + + + + + +
Sbjct: 312 NVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPT 371
Query: 225 QCKGVSRIVDVASGGSACTMLNDEGLVYSWGYGL---LGQGPKVSRSMKPTLIPSTLFGQ 281
+ V + VA+G + G+ YSWG+G +G GP + PT I +T
Sbjct: 372 KLNNVPKFKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFEDDTEVPTRIKNTATQD 431
Query: 282 HQF 284
H
Sbjct: 432 HNI 434
Score = 86.7 bits (215), Expect = 5e-19
Identities = 30/171 (17%), Positives = 61/171 (35%), Gaps = 18/171 (10%)
Query: 2 IKITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVR-IP 60
+ I IA G +++ ++ + L+ CG ++G + V R +P
Sbjct: 313 VVIRSIAAGEHHSLILSQ----DGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVP 368
Query: 61 LPVKHPS-TQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDY-----QGKW 114
LP K + + K +A G H++ + N A+++G G G +++ +
Sbjct: 369 LPTKLNNVPKFKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFEDDTEVPTRIKNT- 427
Query: 115 FCHNIADLEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQ 165
+ I+ CG ++ AD L H ++
Sbjct: 428 ------ATQDHNIILVGCGGQFSVSGGVKLSDEDAEKRADEMDDLEHHHHH 472
Score = 47.1 bits (112), Expect = 4e-06
Identities = 9/57 (15%), Positives = 18/57 (31%)
Query: 280 GQHQFNPKSKVESLIAGPCTFGAITNFGHLYMWGKNQYGQLGLGTVEDQPFPLKVAV 336
G H + S + + ++ WG +LGLG + + +
Sbjct: 2 GHHHHHHMSHIINAQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRL 58
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide
exchange factor, GEF, RAN, RAS-like nuclear GTP binding
protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Length = 413
Score = 186 bits (474), Expect = 6e-56
Identities = 84/357 (23%), Positives = 129/357 (36%), Gaps = 54/357 (15%)
Query: 3 KITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLP 62
+ G TV +KS +++ G N + LG D +G+ +P
Sbjct: 60 DVVQAEAGGMHTVCLSKSG----QVYSFGCNDEGALG-RDTSVEGS----------EMVP 104
Query: 63 VKHPS-TQIKHLATGRAHTIVITDNEGAFTFGN--NSFGQCGRGIVQEEDYQGKWFCHNI 119
K ++ ++ G +HT +TD+ F +G+ ++ G G E + +
Sbjct: 105 GKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLL----EPMKKSMVPVQV 160
Query: 120 ADLEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLG-----------HLNNQETP 168
++ G DH + LT G +Y+ G G GQ G L P
Sbjct: 161 --QLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVP 218
Query: 169 CLV----RGEIEGERIVKLSSAVDCVLAVSDKGDVFGWGNSEYGQI-SESEMQISTPRVL 223
V RG R A+S +G V+G+G S Y Q+ + P+ L
Sbjct: 219 KCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNL 278
Query: 224 SQCKGV-SRIVDVASGGSACTMLNDEGLVYSWG---YGLLGQGPKVSRSMKPTLIPSTLF 279
+ K V + G ++ EG YS G YG LG G PTLI
Sbjct: 279 TSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISR--- 335
Query: 280 GQHQFNPKSKVESLIAGPCTFGAITNFGHLYMWGKNQYGQLGLGTVEDQPFPLKVAV 336
V S+ G A+T G ++ WG QLG G ED P+++
Sbjct: 336 -------LPAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMG 385
Score = 176 bits (448), Expect = 5e-52
Identities = 73/355 (20%), Positives = 119/355 (33%), Gaps = 53/355 (14%)
Query: 3 KITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLP 62
+T+ + G QLG + + + P
Sbjct: 9 IPKSKKVKVSHRSHSTE----PGLVLTLGQGDVGQLGLGENVME----------RKKPAL 54
Query: 63 VKHPSTQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADL 122
V P + G HT+ ++ + ++FG N G GR E
Sbjct: 55 VSIPED-VVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEM-----VPGKVE 108
Query: 123 EGEKIMDAVCGQDHTLFLTESGKVYSCGWGAD--GQTGLGH-LNNQETPCLVRGEIEGER 179
EK++ G HT LT+ G+V+ G D G GL + P V+
Sbjct: 109 LQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQL---DVP 165
Query: 180 IVKLSSAVDCVLAVSDKGDVFGWGNSEYGQ------------ISESEMQISTPRVLSQCK 227
+VK++S D ++ ++ GD++ G E GQ + ++ P+ +
Sbjct: 166 VVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKS 225
Query: 228 GVS----RIVDVASGGSACTMLNDEGLVYSWG---YGLLGQGPKVSRSMKPTLIPSTLFG 280
S R D G ++ EG VY +G Y LG S P + S
Sbjct: 226 RGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCF-IPQNLTSFK-- 282
Query: 281 QHQFNPKSKVESLIAGPCTFGAITNFGHLYMWGKNQYGQLGLG-TVEDQPFPLKV 334
N G + + G Y G+ +YG+LGLG E++ P +
Sbjct: 283 ----NSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLI 333
Score = 163 bits (414), Expect = 5e-47
Identities = 70/281 (24%), Positives = 114/281 (40%), Gaps = 26/281 (9%)
Query: 70 IKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMD 129
K +H T+ T G GQ G G E+ + ++ E ++
Sbjct: 10 PKSKKVKVSHRSHSTEPGLVLTLGQGDVGQLGLG----ENVMERKKPALVSIPED--VVQ 63
Query: 130 AVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSAVDC 189
A G HT+ L++SG+VYS G +G G + E E++V++S+
Sbjct: 64 AEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVE-LQEKVVQVSAGDSH 122
Query: 190 VLAVSDKGDVFGWGN--SEYGQI--SESEMQISTPRVLSQCKGVSRIVDVASGGSACTML 245
A++D G VF WG+ G I E + P Q + +V VASG ML
Sbjct: 123 TAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPV---QVQLDVPVVKVASGNDHLVML 179
Query: 246 NDEGLVYSWGYGLLGQ---------GPKVSRSMKPTLIPSTLFGQHQFNPK-SKVESLIA 295
+G +Y+ G G GQ + ++ L+P + + + + + +
Sbjct: 180 TADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFC 239
Query: 296 GP-CTFGAITNFGHLYMWGKNQYGQLGLGTVEDQPFPLKVA 335
G TF AI++ GH+Y +G + Y QLG E P +
Sbjct: 240 GAYFTF-AISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLT 279
Score = 162 bits (412), Expect = 9e-47
Identities = 59/298 (19%), Positives = 105/298 (35%), Gaps = 34/298 (11%)
Query: 3 KITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLP 62
K+ ++ G T T D + L+G +++ +G +P KK +P+
Sbjct: 112 KVVQVSAGDSHTAALTD--DGRVFLWGSFRDNNGVIGLLEPMKK----------SMVPVQ 159
Query: 63 VKHPSTQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNI--- 119
V+ + +A+G H +++T + +T G GQ GR + G+ +
Sbjct: 160 VQLDVP-VVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVP 218
Query: 120 --------ADLEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLV 171
+ DA CG T ++ G VY G Q G + P +
Sbjct: 219 KCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNL 278
Query: 172 RG-EIEGERIVKLSSAVDCVLAVSDKGDVFGWGNSEYGQ--ISESEMQISTPRVLSQCKG 228
+ + V S + + +G + G +EYG+ + E + S P
Sbjct: 279 TSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPT---LISR 335
Query: 229 VSRIVDVASGGSACTMLNDEGLVYSWGYGL---LGQGPKVSRSMKPTLIPSTLFGQHQ 283
+ + VA G S + +G V++WG G LG G P +
Sbjct: 336 LPAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAW-SPVEMMGKQLENRV 392
Score = 147 bits (372), Expect = 5e-41
Identities = 49/259 (18%), Positives = 91/259 (35%), Gaps = 23/259 (8%)
Query: 2 IKITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPL 61
+ + +A G V+ T L+ G QLG + + +P
Sbjct: 164 VPVVKVASGNDHLVMLTADG----DLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPK 219
Query: 62 PVKHPS------TQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWF 115
V S + + G T I+ + FG +++ Q G + +
Sbjct: 220 CVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTP-----GTESCFI 274
Query: 116 CHNIADLEG--EKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGH-LNNQETPCLVR 172
N+ + + + GQ HT+ + GK YS G G+ GLG + P L+
Sbjct: 275 PQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLIS 334
Query: 173 GEIEGERIVKLSSAVDCVLAVSDKGDVFGWGNSEYGQI-SESEMQISTP-RVLSQCKGVS 230
+ ++ AV+ G VF WG Q+ + + +P ++ +
Sbjct: 335 R---LPAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENR 391
Query: 231 RIVDVASGGSACTMLNDEG 249
++ V+SGG +L +
Sbjct: 392 VVLSVSSGGQHTVLLVKDK 410
Score = 115 bits (290), Expect = 3e-29
Identities = 42/199 (21%), Positives = 81/199 (40%), Gaps = 19/199 (9%)
Query: 2 IKITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPL 61
++ D CG FT + ++G GL++ QLG P + + SF
Sbjct: 232 VRFQDAFCGAYFTFAISHEG----HVYGFGLSNYHQLGTPGTESCFIP-QNLTSF----- 281
Query: 62 PVKHPSTQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIAD 121
K+ + + G+ HT+ + A++ G +G+ G G E + K I+
Sbjct: 282 --KNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLG----EGAEEKSIPTLISR 335
Query: 122 LEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGE-IEGERI 180
L + CG +T+ G+V++ G G + Q G G + +P + G+ +E +
Sbjct: 336 LPA--VSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVV 393
Query: 181 VKLSSAVDCVLAVSDKGDV 199
+ +SS + + +
Sbjct: 394 LSVSSGGQHTVLLVKDKEQ 412
Score = 79.3 bits (196), Expect = 1e-16
Identities = 25/148 (16%), Positives = 46/148 (31%), Gaps = 26/148 (17%)
Query: 1 MIKITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIP 60
+ G TV K + G +LG + ++ + IP
Sbjct: 285 TKSWVGFSGGQHHTVCMDSEG----KAYSLGRAEYGRLGLGEGAEEKS----------IP 330
Query: 61 LPVKHPSTQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDY----QGKWFC 116
+ + +A G + +T + F +G + Q G G ++ GK
Sbjct: 331 TLISRLPA-VSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQ-- 387
Query: 117 HNIADLEGEKIMDAVCGQDHTLFLTESG 144
LE ++ G HT+ L +
Sbjct: 388 -----LENRVVLSVSSGGQHTVLLVKDK 410
Score = 71.6 bits (176), Expect = 5e-14
Identities = 25/112 (22%), Positives = 36/112 (32%), Gaps = 13/112 (11%)
Query: 230 SRIVDVASGGSACTMLNDEGLVYSWG---YGLLGQGPKVSRSMKPTLIPSTLFGQHQFNP 286
+ S + + GLV + G G LG G V KP L+
Sbjct: 8 AIPKSKKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIP--------- 58
Query: 287 KSKVESLIAGPCTFGAITNFGHLYMWGKNQYGQLGLGTVEDQPFPLKVAVGG 338
V AG ++ G +Y +G N G LG T + + V
Sbjct: 59 -EDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVEL 109
>3mvd_K Regulator of chromosome condensation; protein-DNA complex,
nucleosome core particle (NCP), NCP-CHR factor complex;
HET: DNA; 2.90A {Drosophila melanogaster}
Length = 423
Score = 177 bits (451), Expect = 3e-52
Identities = 74/352 (21%), Positives = 126/352 (35%), Gaps = 55/352 (15%)
Query: 3 KITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLP 62
DI+ G +V TKS ++ G N + LG D + G+ P
Sbjct: 76 DAVDISAGGMHNLVLTKSG----DIYSFGCNDEGALG-RDTSEDGS--------ESKPDL 122
Query: 63 VKHPSTQIKHLATGRAHTIVITDNEGAFTFGN--NSFGQCGRGIVQEEDYQGKWFCHNIA 120
+ P ++ G +H+ + ++ F +G+ +S G G K ++
Sbjct: 123 IDLPGK-ALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLT-----IDGNKRTPIDL- 175
Query: 121 DLEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQE-----------TPC 169
+EG G DH + LT +GKV++ G GQ G + P
Sbjct: 176 -MEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPT 234
Query: 170 LVRGEIEGERIVKLSSAVDCVLAV-SDKGDVFGWGNSEYGQ--ISESEMQISTPRVLSQC 226
+ + + + C S ++ G + + Q + + + ++
Sbjct: 235 QLII-TRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTEL 293
Query: 227 KGVSRIVDVASGGSACTM-LNDEGLVYSWG---YGLLGQGPKVSRSMKPTLIPSTLFGQH 282
K + I +GG T+ L + G YG LG G KPT++
Sbjct: 294 KDIRHI----AGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKK------ 343
Query: 283 QFNPKSKVESLIAGPCTFGAITNFGHLYMWGKNQYGQLGLGTVEDQPFPLKV 334
K+ S+ G A+T G LY WG QLG+G +D+ P+ V
Sbjct: 344 ---LTEKIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVV 392
Score = 173 bits (441), Expect = 6e-51
Identities = 69/357 (19%), Positives = 116/357 (32%), Gaps = 53/357 (14%)
Query: 3 KITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLP 62
K IA T + CG QLG + + L V
Sbjct: 25 KRARIAFHLELPKRRTV----LGNVLVCGNGDVGQLGLGEDILERKRLSPVAGI------ 74
Query: 63 VKHPSTQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADL 122
++ G H +V+T + ++FG N G GR ++
Sbjct: 75 -----PDAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSES-----KPDLID 124
Query: 123 EGEKIMDAVCGQDHTLFLTESGKVYSCGWGAD--GQTGLGHLNNQETPCLVRGEIEGERI 180
K + G H+ L E G+V++ G D G GL N+ TP + +EG
Sbjct: 125 LPGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDL---MEGTVC 181
Query: 181 VKLSSAVDCVLAVSDKGDVFGWGNSEYGQ------------ISESEMQISTPRVLSQCKG 228
++S D ++ ++ G VF G +E GQ + + P
Sbjct: 182 CSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRP-TQLIITR 240
Query: 229 VSRIVDVASGGSACTMLNDE-GLVYSWG---YGLLGQGPKVSRSMKPTLIPSTLFGQHQF 284
+ + M + ++++ G + L K T I + L
Sbjct: 241 AKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEF-ALTPIKTEL------ 293
Query: 285 NPKSKVESLIAGPCTFGAITNFGHLYMWGKNQYGQLGLGTVEDQ-PFPLKVAVGGQK 340
+ + G +T + G+ +YG+LGLG V+D P V +K
Sbjct: 294 ---KDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEK 347
Score = 158 bits (402), Expect = 3e-45
Identities = 60/286 (20%), Positives = 98/286 (34%), Gaps = 23/286 (8%)
Query: 66 PSTQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGE 125
P + +A T GN GQ G G ED + +A +
Sbjct: 22 PKAKRARIAFHLELPKRRTVLGNVLVCGNGDVGQLGLG----EDILERKRLSPVAGIPD- 76
Query: 126 KIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQE--TPCLVRGEIEGERIVKL 183
+D G H L LT+SG +YS G +G G + P L+ + + +
Sbjct: 77 -AVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDL---PGKALCI 132
Query: 184 SSAVDCVLAVSDKGDVFGWGNSE--YGQI-SESEMQISTPRVLSQCKGVSRIVDVASGGS 240
S+ + + G VF WG+ +G + + TP + +ASG
Sbjct: 133 SAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPI---DLMEGTVCCSIASGAD 189
Query: 241 ACTMLNDEGLVYSWG---YGLLGQGPKVSRSMKPTLIPSTLF--GQHQFNPKSKVESLIA 295
+L G V++ G G LG+ + S S + L Q E++ A
Sbjct: 190 HLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWA 249
Query: 296 GP-CTFGAITNFGHLYMWGKNQYGQLGLGTVEDQPFPLKVAVGGQK 340
CTF + ++ G N + QL T + + +
Sbjct: 250 TNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKD 295
Score = 144 bits (366), Expect = 5e-40
Identities = 48/243 (19%), Positives = 78/243 (32%), Gaps = 15/243 (6%)
Query: 2 IKITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPL 61
IA G V+ T + K+F G QLG R + P
Sbjct: 179 TVCCSIASGADHLVILTTAG----KVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPT 234
Query: 62 PVKHP-STQIKHLATGRAHTIVITDNEGA-FTFGNNSFGQCGRGIVQEEDYQGKWFCHNI 119
+ + + + T + + G N+F Q +E
Sbjct: 235 QLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTP------ 288
Query: 120 ADLEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGER 179
E + I GQ HT+ LT K G G+ GLG + + + E+
Sbjct: 289 IKTELKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKD-VVEKPTIVKKLTEK 347
Query: 180 IVKLSSAVDCVLAVSDKGDVFGWGNSEYGQI-SESEMQISTP-RVLSQCKGVSRIVDVAS 237
IV + C AV+ G ++ WG+ Q+ P V+S+ ++ +
Sbjct: 348 IVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVSKNTQGKHMLLASG 407
Query: 238 GGS 240
GG
Sbjct: 408 GGQ 410
Score = 121 bits (305), Expect = 2e-31
Identities = 41/197 (20%), Positives = 76/197 (38%), Gaps = 20/197 (10%)
Query: 2 IKITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPL 61
I T + + ++ GLN+ QL +
Sbjct: 242 KPFEAIWATNYCTFMRE---SQTQVIWATGLNNFKQLAHETK-----------GKEFALT 287
Query: 62 PVKHPSTQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIAD 121
P+K I+H+A G+ HT+++T + G +G+ G G D + I
Sbjct: 288 PIKTELKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLG-----DVKDVVEKPTIVK 342
Query: 122 LEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGE-IEGERI 180
EKI+ CG+ + +T GK+YS G G + Q G+G +++ P +V + +G+ +
Sbjct: 343 KLTEKIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVSKNTQGKHM 402
Query: 181 VKLSSAVDCVLAVSDKG 197
+ S + +
Sbjct: 403 LLASGGGQHAIFLVKAD 419
Score = 85.5 bits (212), Expect = 9e-19
Identities = 31/143 (21%), Positives = 55/143 (38%), Gaps = 17/143 (11%)
Query: 3 KITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLP 62
I IA G TV+ T K G +LG D + V P
Sbjct: 295 DIRHIAGGQHHTVILTTDL----KCSVVGRPEYGRLGLGDVKDV----------VEKPTI 340
Query: 63 VKHPSTQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADL 122
VK + +I + G + +T + +++G+ Q G G + D + + +
Sbjct: 341 VKKLTEKIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVG---DGDDELEPIVVVSKNT 397
Query: 123 EGEKIMDAVCGQDHTLFLTESGK 145
+G+ ++ A G H +FL ++ K
Sbjct: 398 QGKHMLLASGGGQHAIFLVKADK 420
Score = 68.9 bits (169), Expect = 4e-13
Identities = 23/139 (16%), Positives = 40/139 (28%), Gaps = 17/139 (12%)
Query: 203 GNSEYGQISESEMQISTPRVLSQCKGVSRIVDVASGGSACTMLNDEGLVYSWGY---GLL 259
G+ ++ + + Q ++ +A G V G G L
Sbjct: 1 GSPRRKALTNN----NNAGEAEQQPPKAKRARIAFHLELPKRRTVLGNVLVCGNGDVGQL 56
Query: 260 GQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPCTFGAITNFGHLYMWGKNQYGQ 319
G G + + + + + AG +T G +Y +G N G
Sbjct: 57 GLGEDILERKRLSPVAG----------IPDAVDISAGGMHNLVLTKSGDIYSFGCNDEGA 106
Query: 320 LGLGTVEDQPFPLKVAVGG 338
LG T ED +
Sbjct: 107 LGRDTSEDGSESKPDLIDL 125
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex,
beta-propeller, protein:protein interaction; 2.06A
{Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Length = 282
Score = 117 bits (294), Expect = 7e-31
Identities = 59/321 (18%), Positives = 96/321 (29%), Gaps = 92/321 (28%)
Query: 4 ITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLPV 63
+ IA GY + K K+ G G N + QL + G
Sbjct: 26 VDAIAGGYFHGLAL-----KGGKVLGWGANLNGQLTMPAATQSG---------------- 64
Query: 64 KHPSTQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLE 123
+ +A G H++ + D E +G N GQ +
Sbjct: 65 ------VDAIAAGNYHSLALKDGE-VIAWGGNEDGQTT-----------------VPAEA 100
Query: 124 GEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKL 183
+ G + L GKV + G +DGQT + E + V
Sbjct: 101 RSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVP--------------AEAQSGVTA 145
Query: 184 SSAVDCVLAVSDKGDVFGWGNSEYGQISESEMQISTPRVLSQCKGVSRIVDVASGGSACT 243
G V WG++ +GQ + + S + DVA G
Sbjct: 146 LDGGVYTALAVKNGGVIAWGDNYFGQTT------------VPAEAQSGVDDVAGGIFHSL 193
Query: 244 MLNDEGLVYSWGYGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPCTFGAI 303
L D G V +WG Q + ++ S V ++ +G A+
Sbjct: 194 ALKD-GKVIAWGDNRYKQTTVPTEAL------------------SGVSAIASGEWYSLAL 234
Query: 304 TNFGHLYMWGKNQYGQLGLGT 324
N G + WG ++ + +
Sbjct: 235 KN-GKVIAWGSSRTAPSSVQS 254
Score = 109 bits (275), Expect = 4e-28
Identities = 48/265 (18%), Positives = 84/265 (31%), Gaps = 66/265 (24%)
Query: 60 PLPVKHPSTQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNI 119
+P + S + +A G H + + + +G N GQ
Sbjct: 17 TVPAEAQSG-VDAIAGGYFHGLALKGGK-VLGWGANLNGQLTMP---------------- 58
Query: 120 ADLEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGER 179
+ G H+L L G+V + G DGQT +
Sbjct: 59 -AATQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTVPAEARS-------------G 103
Query: 180 IVKLSSAVDCVLAVSDKGDVFGWGNSEYGQISESEMQISTPRVLSQCKGVSRIVDVASGG 239
+ +++ A+ D G V WG+ GQ + + S + + G
Sbjct: 104 VDAIAAGAWASYALKD-GKVIAWGDDSDGQTT------------VPAEAQSGVTALDGGV 150
Query: 240 SACTMLNDEGLVYSWGYGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPCT 299
+ + G V +WG GQ +P+ +S V+ + G
Sbjct: 151 YTALAVKN-GGVIAWGDNYFGQTT----------VPAEA--------QSGVDDVAGGIFH 191
Query: 300 FGAITNFGHLYMWGKNQYGQLGLGT 324
A+ + G + WG N+Y Q + T
Sbjct: 192 SLALKD-GKVIAWGDNRYKQTTVPT 215
Score = 91.6 bits (228), Expect = 1e-21
Identities = 44/259 (16%), Positives = 83/259 (32%), Gaps = 73/259 (28%)
Query: 3 KITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLP 62
+ IA G ++ K+ ++ G N D Q +P
Sbjct: 64 GVDAIAAGNYHSLAL-----KDGEVIAWGGNEDGQTT-------------------VPAE 99
Query: 63 VKHPSTQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADL 122
+ + + +A G + + D + +G++S GQ
Sbjct: 100 AR---SGVDAIAAGAWASYALKDGK-VIAWGDDSDGQTTVPA------------------ 137
Query: 123 EGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVK 182
E + + A+ G +T ++G V + G GQT + +
Sbjct: 138 EAQSGVTALDGGVYTALAVKNGGVIAWGDNYFGQTTVPAEA-------------QSGVDD 184
Query: 183 LSSAVDCVLAVSDKGDVFGWGNSEYGQISESEMQISTPRVLSQCKGVSRIVDVASGGSAC 242
++ + LA+ D G V WG++ Y Q + + +S + +ASG
Sbjct: 185 VAGGIFHSLALKD-GKVIAWGDNRYKQTT------------VPTEALSGVSAIASGEWYS 231
Query: 243 TMLNDEGLVYSWGYGLLGQ 261
L + G V +WG
Sbjct: 232 LALKN-GKVIAWGSSRTAP 249
Score = 70.8 bits (174), Expect = 4e-14
Identities = 35/182 (19%), Positives = 59/182 (32%), Gaps = 45/182 (24%)
Query: 143 SGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSAVDCVLAVSDKGDVFGW 202
+ V + G D P + ++ LA+ G V GW
Sbjct: 1 ATSVVAWGGNNDWGEAT-------VPAEA-----QSGVDAIAGGYFHGLALKG-GKVLGW 47
Query: 203 GNSEYGQISESEMQISTPRVLSQCKGVSRIVDVASGGSACTMLNDEGLVYSWGYGLLGQG 262
G + GQ++ S + +A+G L D G V +WG GQ
Sbjct: 48 GANLNGQLTMPA------------ATQSGVDAIAAGNYHSLALKD-GEVIAWGGNEDGQT 94
Query: 263 PKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPCTFGAITNFGHLYMWGKNQYGQLGL 322
+P+ +S V+++ AG A+ + G + WG + GQ +
Sbjct: 95 T----------VPAEA--------RSGVDAIAAGAWASYALKD-GKVIAWGDDSDGQTTV 135
Query: 323 GT 324
Sbjct: 136 PA 137
Score = 54.2 bits (131), Expect = 1e-08
Identities = 24/186 (12%), Positives = 50/186 (26%), Gaps = 71/186 (38%)
Query: 4 ITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLPV 63
+T + G +T +A K+ + G N Q +P
Sbjct: 143 VTALDGGV-YTALAVKNGG----VIAWGDNYFGQTT-------------------VPAEA 178
Query: 64 KHPSTQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLE 123
+ + +A G H++ + D +G+N + Q
Sbjct: 179 ---QSGVDDVAGGIFHSLALKDG-KVIAWGDNRYKQTTVPT-----------------EA 217
Query: 124 GEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGL------------------------ 159
+ G+ ++L L +GKV + G + +
Sbjct: 218 LSGVSAIASGEWYSLALK-NGKVIAWGSSRTAPSSVQSGVSSIEAGPNAAYALKGGSGSG 276
Query: 160 -GHLNN 164
H ++
Sbjct: 277 HHHHHH 282
Score = 40.7 bits (96), Expect = 4e-04
Identities = 17/91 (18%), Positives = 28/91 (30%), Gaps = 21/91 (23%)
Query: 249 GLVYSWGY-GLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPCTFGAITNFG 307
V +WG G+ + + S V+++ G A+ G
Sbjct: 2 TSVVAWGGNNDWGEATVPAEAQ------------------SGVDAIAGGYFHGLALKG-G 42
Query: 308 HLYMWGKNQYGQLGLGTVEDQPFPLKVAVGG 338
+ WG N GQL + +A G
Sbjct: 43 KVLGWGANLNGQLTMPAATQSGV-DAIAAGN 72
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.0 bits (111), Expect = 6e-06
Identities = 51/345 (14%), Positives = 85/345 (24%), Gaps = 133/345 (38%)
Query: 36 SQLGYHDPRKKGNPLELVMSF------VRIPLPVKHPSTQIKHLATGRAHTIVITDNEGA 89
++L + EL+ ++ + P K S + + G A + I
Sbjct: 106 AKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI------ 159
Query: 90 FTFGNNSFGQCGRGIVQE---------EDYQG--KWFCHNIADLEGEKIMDAVCGQDHTL 138
FG GQ G + + Y A+ E I +
Sbjct: 160 --FG----GQ---GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTL------- 203
Query: 139 FLTESGKVYSCG-----WGADGQT-----------------GLGHLNNQETPCLVRGEIE 176
++ KV++ G W + G+ L + + G
Sbjct: 204 ---DAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTP 260
Query: 177 GERIVKLSSAVDC--------VLAVSDKGDVF--------------GW-GNSEYGQISES 213
GE L A +A +D + F G Y S
Sbjct: 261 GELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTS-- 318
Query: 214 EMQISTPRVLSQCKGVSRIVDVASG-GSACTMLNDEGLVYSWGYGLLGQGPKVSRSMKPT 272
P +L + + G ML+ L ++
Sbjct: 319 ----LPPSILEDS--------LENNEGVPSPMLSISNL---------------TQEQVQD 351
Query: 273 LIPSTLFGQHQFNPKSKVE-SLIAGPCTFGAITNF---GH---LY 310
+ H +VE SL+ G N G LY
Sbjct: 352 YV--NKTNSH-LPAGKQVEISLVNGA------KNLVVSGPPQSLY 387
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.1 bits (77), Expect = 0.071
Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 20/93 (21%)
Query: 2 IKITDIACGYGFTVVATK------SKDKNLKLFGCGLNSDSQ-LGYHDPR--KKGNPLEL 52
++TD T ++ + D+ L L+ Q L PR NP L
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL----PREVLTTNPRRL 330
Query: 53 VMSFVRIPLPVK-HPST--QIKHLATGRAHTIV 82
+ I ++ +T KH+ + TI+
Sbjct: 331 SI----IAESIRDGLATWDNWKHVNCDKLTTII 359
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG,
structural genomics, PSI-2, prote structure initiative;
HET: FAD; 2.15A {Vibrio parahaemolyticus}
Length = 549
Score = 30.4 bits (68), Expect = 1.1
Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 6/71 (8%)
Query: 29 GCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLPVKHPSTQIKHLATGRAHTIV------ 82
G G SD +L +++ FV P + H+ T + T++
Sbjct: 170 GAGTFSDGKLYSQVKDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRAT 229
Query: 83 ITDNEGAFTFG 93
I + G F
Sbjct: 230 IIELGGEIRFS 240
>2w8d_A Processed glycerol phosphate lipoteichoic acid SY; transferase,
phosphatase, cell membrane, transmembrane, LTA,
membrane, secreted, cell WALL; HET: TPO PG4; 2.35A
{Bacillus subtilis}
Length = 436
Score = 29.1 bits (65), Expect = 2.6
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 135 DHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGE-IEGERIVKLSSAVD 188
DH K + G D T + Q P + ++GE++ K + VD
Sbjct: 258 DHYGISENHNKAMAKVLGKDEITDYDNAQLQRVPLFIHAAGVKGEKVHKYAGDVD 312
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK
structural genomix research CO NYSGXRC, PSI-2, protein
structur initiative; 2.70A {Yersinia pestis}
Length = 294
Score = 28.7 bits (65), Expect = 2.6
Identities = 6/44 (13%), Positives = 12/44 (27%), Gaps = 7/44 (15%)
Query: 73 LATGRAHTI--VITDNEGAFTFGNNSFGQCGRGIVQ---EEDYQ 111
++ GR I N++F + I +
Sbjct: 1 MSLGRTDAIALAYPSRPRVLN--NSTFLEMISWIGIELGKRGLD 42
>3r8s_W 50S ribosomal protein L27; protein biosynthesis, RNA, tRNA,
transfer RNA, 23S ribosomal subunit, ribosome recycling
factor, RRF, ribosome; 3.00A {Escherichia coli} PDB:
2qam_W* 1p85_U 1p86_U 2awb_W 2gya_U 2gyc_U 2aw4_W 2i2v_W
2j28_W 2i2t_W* 2qao_W* 2qba_W* 2qbc_W* 2qbe_W 2qbg_W
2qbi_W* 2qbk_W* 2qov_W 2qox_W 2qoz_W* ...
Length = 76
Score = 25.7 bits (57), Expect = 6.0
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 132 CGQDHTLFLTESGKV 146
CG+DHTLF GKV
Sbjct: 44 CGRDHTLFAKADGKV 58
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase
binding, liver cytosol, transferase-transferase
inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus}
PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A*
2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A
1r74_A* 2azt_A*
Length = 293
Score = 27.7 bits (61), Expect = 6.4
Identities = 7/40 (17%), Positives = 13/40 (32%), Gaps = 1/40 (2%)
Query: 106 QEEDYQGKWFCHNIADLEGEKIMDAVCGQ-DHTLFLTESG 144
W + +++D CG ++ L E G
Sbjct: 40 SRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEG 79
>2ftc_O L27MT, MRP-L27, mitochondrial 39S ribosomal protein L27;
mitochondrial ribosome, large ribosomal subunit,
ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_O
Length = 69
Score = 25.7 bits (57), Expect = 6.5
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 132 CGQDHTLFLTESGKV 146
G++ L+ E G V
Sbjct: 53 VGKNKCLYALEEGIV 67
>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown
function, PSI, protein structure initiative; 2.50A
{Bacillus subtilis} SCOP: c.116.1.3
Length = 167
Score = 26.8 bits (60), Expect = 7.0
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 119 IADLEGEKIMDAVCGQDHTLFLTESGKVYS 148
I D EG++I+ + H + L GK+ +
Sbjct: 55 IKDKEGDRILSKISPDAHVIALAIEGKMKT 84
>2c0n_A A197; thermophil protein, thermophilic virus, STIV, sulfolobus
turreted ICOS virus; 1.86A {Sulfolobus turreted
icosahedral virus}
Length = 203
Score = 26.9 bits (59), Expect = 8.0
Identities = 17/106 (16%), Positives = 30/106 (28%), Gaps = 26/106 (24%)
Query: 54 MSFVRIPLPVKHPSTQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQ-- 111
M VR+PL I+++ R + + + F ++ D
Sbjct: 10 MGSVRLPLIDFLVKNDIEYVILSRRNHVAVQREIALDMFLEM----------KDYDTLAF 59
Query: 112 --------GKWFCHNIADLEGEKIMDAVCGQDHTLFLTESGKVYSC 149
F A D VCG + ++ + YS
Sbjct: 60 LDEDVVPIEIDFQKVEAKFNEGY--DVVCG----YYYLKTLRGYSV 99
>1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown
function; 1.66A {Thermotoga maritima} SCOP: c.116.1.3
Length = 163
Score = 26.3 bits (59), Expect = 9.1
Identities = 5/30 (16%), Positives = 12/30 (40%)
Query: 119 IADLEGEKIMDAVCGQDHTLFLTESGKVYS 148
I E E + + + + + + G+ S
Sbjct: 50 IVRKETEDLTNRILPGSFVMVMDKRGEEVS 79
>2zjr_T 50S ribosomal protein L27; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.84.4.1 PDB: 1nwx_U* 1nwy_U* 1sm1_U*
1xbp_U* 1y69_U 1yl3_3 2b66_0 2b9n_0 2b9p_0 2zjp_T*
2zjq_T 1nkw_U 3cf5_T* 3dll_T* 3pio_T* 3pip_T* 1pnu_U
1pny_U 1vor_X 1vou_X ...
Length = 91
Score = 25.4 bits (56), Expect = 9.6
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 132 CGQDHTLFLTESGKV 146
G+DHTLF GKV
Sbjct: 53 MGRDHTLFALSDGKV 67
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.137 0.426
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,086,234
Number of extensions: 294874
Number of successful extensions: 870
Number of sequences better than 10.0: 1
Number of HSP's gapped: 597
Number of HSP's successfully gapped: 59
Length of query: 340
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 246
Effective length of database: 4,077,219
Effective search space: 1002995874
Effective search space used: 1002995874
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.1 bits)