RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5892
(340 letters)
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 401
Score = 92.9 bits (229), Expect = 9e-22
Identities = 73/379 (19%), Positives = 107/379 (28%), Gaps = 89/379 (23%)
Query: 26 KLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLPVKHPSTQIKHLATGRAHTIVITD 85
+ G QLG G + + +P + G HT+ ++
Sbjct: 16 LVLTLGQGDVGQLGL------GENVMERKKPALVSIP-----EDVVQAEAGGMHTVCLSK 64
Query: 86 NEGAFTFGNNSFGQCGRGIVQEEDYQGKWFC----------------------------- 116
+ ++FG N G GR E
Sbjct: 65 SGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWG 124
Query: 117 -------------------HNIADLEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQT 157
+ ++ G DH + LT G +Y+ G G GQ
Sbjct: 125 SFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQL 184
Query: 158 GLG---------------HLNNQETPCLVRGEIEGERIVKLSSAVDCVLAVSDKGDVFGW 202
G L + RG R A+S +G V+G+
Sbjct: 185 GRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGF 244
Query: 203 GNSEYGQ--ISESEMQISTPRVLSQCKGVSRIVDVASGGSACTMLNDEGLVYSWGY---G 257
G S Y Q +E + S V + G ++ EG YS G G
Sbjct: 245 GLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYG 304
Query: 258 LLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPCTFGAITNFGHLYMWGKNQY 317
LG G PTLI V S+ G A+T G ++ WG
Sbjct: 305 RLGLGEGAEEKSIPTLISRL----------PAVSSVACGASVGYAVTKDGRVFAWGMGTN 354
Query: 318 GQLGLGTVEDQPFPLKVAV 336
QLG G ED P+++
Sbjct: 355 YQLGTGQDEDAWSPVEMMG 373
Score = 72.1 bits (175), Expect = 1e-14
Identities = 49/256 (19%), Positives = 86/256 (33%), Gaps = 16/256 (6%)
Query: 76 GRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQD 135
+H T+ T G GQ G G E+ + ++ E ++ A G
Sbjct: 4 KVSHRSHSTEPGLVLTLGQGDVGQLGLG----ENVMERKKPALVSIPED--VVQAEAGGM 57
Query: 136 HTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSAVDCVLAVSD 195
HT+ L++SG+VYS G +G G + E++ + + + D
Sbjct: 58 HTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDD 117
Query: 196 KG---DVFGWGNSEYGQISESEMQISTPRVLSQCKGVSRIVDVASGGSACTMLNDEGLVY 252
N+ + E + P + V ++ T D +
Sbjct: 118 GRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLG 177
Query: 253 SWGYGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKS-------KVESLIAGPCTFGAITN 305
G LG+ P++ + L KS + + G AI++
Sbjct: 178 CGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISH 237
Query: 306 FGHLYMWGKNQYGQLG 321
GH+Y +G + Y QLG
Sbjct: 238 EGHVYGFGLSNYHQLG 253
Score = 66.0 bits (159), Expect = 1e-12
Identities = 37/198 (18%), Positives = 72/198 (36%), Gaps = 19/198 (9%)
Query: 2 IKITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPL 61
++ D CG FT + G + + G P +
Sbjct: 220 VRFQDAFCGAYFTFAISHE------------GHVYGFGLSNYHQLGTPGTESCFIPQNLT 267
Query: 62 PVKHPSTQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIAD 121
K+ + + G+ HT+ + A++ G +G+ G G EE K I+
Sbjct: 268 SFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEE----KSIPTLISR 323
Query: 122 LEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGE-IEGERI 180
L + CG +T+ G+V++ G G + Q G G + +P + G+ +E +
Sbjct: 324 LPA--VSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVV 381
Query: 181 VKLSSAVDCVLAVSDKGD 198
+ +SS + + +
Sbjct: 382 LSVSSGGQHTVLLVKDKE 399
Score = 39.4 bits (90), Expect = 4e-04
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 302 AITNFGHLYMWGKNQYGQLGLG-TVEDQPFPLKVAVG 337
T G + G+ GQLGLG V ++ P V++
Sbjct: 10 HSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIP 46
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II
{Streptomyces exfoliatus [TaxId: 1905]}
Length = 273
Score = 56.3 bits (134), Expect = 1e-09
Identities = 35/265 (13%), Positives = 72/265 (27%), Gaps = 27/265 (10%)
Query: 60 PLPVKHPSTQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNI 119
+P + S + +A G H + + + +G N GQ + N
Sbjct: 19 TVPAEAQSG-VDAIAGGYFHGLALKGGK-VLGWGANLNGQLTMPAATQSGVD-AIAAGNY 75
Query: 120 ADLEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGER 179
L + G + T + S + + +G+
Sbjct: 76 HSLALKDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWASYALKDGKVIAWGDDSDGQT 135
Query: 180 IVKLSSAVDCVLAVSDKGDVFGWGNSEYGQISESEMQISTPRVLSQCKGVSRIVDVASGG 239
V + N ++ +T +Q +GG
Sbjct: 136 TVPAEAQSGVTALDGGVYTALAVKNGGVIAWGDNYFGQTTVPAEAQSGVDDV-----AGG 190
Query: 240 SACTMLNDEGLVYSWGYGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPCT 299
++ +G V +WG Q +P+ S V ++ +G
Sbjct: 191 IFHSLALKDGKVIAWGDNRYKQTT----------VPTEAL--------SGVSAIASGEWY 232
Query: 300 FGAITNFGHLYMWGKNQYGQLGLGT 324
A+ N G + WG ++ + +
Sbjct: 233 SLALKN-GKVIAWGSSRTAPSSVQS 256
Score = 25.5 bits (54), Expect = 9.8
Identities = 6/37 (16%), Positives = 14/37 (37%), Gaps = 5/37 (13%)
Query: 3 KITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLG 39
++ IA G +++ N K+ G + +
Sbjct: 222 GVSAIASGEWYSLALK-----NGKVIAWGSSRTAPSS 253
>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal
domain {Bacillus stearothermophilus [TaxId: 1422]}
Length = 323
Score = 27.6 bits (60), Expect = 2.1
Identities = 15/103 (14%), Positives = 24/103 (23%), Gaps = 5/103 (4%)
Query: 123 EGEKIMDAVCGQDHT--LFLTESGKVYSCG---WGADGQTGLGHLNNQETPCLVRGEIEG 177
+ ++++ + L T G C LG P EI
Sbjct: 37 DTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPIDRDEEIIK 96
Query: 178 ERIVKLSSAVDCVLAVSDKGDVFGWGNSEYGQISESEMQISTP 220
+ L V+ G V Y S+
Sbjct: 97 AIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGIN 139
>d1k82a2 b.113.1.1 (A:1-128) DNA repair protein MutM (Fpg)
{Escherichia coli [TaxId: 562]}
Length = 128
Score = 26.5 bits (58), Expect = 2.8
Identities = 9/62 (14%), Positives = 21/62 (33%), Gaps = 9/62 (14%)
Query: 12 GFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLPVKHPSTQIK 71
++ + + +++ L Y DPR+ G +++ H +
Sbjct: 76 SLRILPEELPPEKHDHVDLVMSNGKVLRYTDPRRFG-------AWLWTKELEGHN--VLT 126
Query: 72 HL 73
HL
Sbjct: 127 HL 128
>d1v8qa_ b.84.4.1 (A:) Ribosomal protein L27 {Thermus thermophilus
[TaxId: 274]}
Length = 66
Score = 24.6 bits (54), Expect = 4.9
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 132 CGQDHTLFLTESGKV 146
G+D TLF G V
Sbjct: 34 MGRDFTLFALVDGVV 48
>d2zjrt1 b.84.4.1 (T:2-85) Ribosomal protein L27 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 84
Score = 24.7 bits (54), Expect = 6.8
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 132 CGQDHTLFLTESGKV 146
G+DHTLF GKV
Sbjct: 52 MGRDHTLFALSDGKV 66
>d1ei5a2 b.61.3.1 (A:418-520) D-aminopeptidase, middle and
C-terminal domains {Ochrobactrum anthropi [TaxId: 529]}
Length = 103
Score = 24.8 bits (54), Expect = 7.4
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 243 TMLNDEGLVYSWGYGLLGQGP 263
++++ G +Y G LG+
Sbjct: 23 LLVSEGGAIYGAFEGFLGKSD 43
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.137 0.426
Gapped
Lambda K H
0.267 0.0683 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,249,470
Number of extensions: 55773
Number of successful extensions: 159
Number of sequences better than 10.0: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 14
Length of query: 340
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 254
Effective length of database: 1,226,816
Effective search space: 311611264
Effective search space used: 311611264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.3 bits)