BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy5893
         (1182 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
           Complexed With Gdp
 pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
           Complexed With Gdpnp
          Length = 594

 Score = 30.4 bits (67), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 28/45 (62%)

Query: 73  VADLVLLLIDASFGFEMEIFEFLNICQVHGESTEKSMMEIDGIHG 117
           +ADL +L++D + GF+ +  E LNI +++      +  +ID IHG
Sbjct: 93  LADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHG 137


>pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
          Length = 594

 Score = 30.4 bits (67), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 27/45 (60%)

Query: 73  VADLVLLLIDASFGFEMEIFEFLNICQVHGESTEKSMMEIDGIHG 117
           +ADL +L++D + GF+ +  E LNI + +      +  +ID IHG
Sbjct: 93  LADLAILIVDINEGFKPQTQEALNILRXYRTPFVVAANKIDRIHG 137


>pdb|1VNH|A Chain A, Chloroperoxidase From The Fungus Curvularia Inaequalis:
           Mutant H496a
          Length = 609

 Score = 30.0 bits (66), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 11/69 (15%)

Query: 613 LYIRVELDGMPCELIENFDPTYPLIVGGLQPGEETIGCVRARVKKH---RWYGKILKSGN 669
           + I  EL+G+  +L + +DPT P+        E+  G VR R+ +H    W      + +
Sbjct: 438 MMISEELNGVNRDLRQPYDPTAPI--------EDQPGIVRTRIVRHFDSAWELMFENAIS 489

Query: 670 PVIMSVGWR 678
            + + V WR
Sbjct: 490 RIFLGVAWR 498


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.134    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,165,301
Number of Sequences: 62578
Number of extensions: 1092681
Number of successful extensions: 2389
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2386
Number of HSP's gapped (non-prelim): 4
length of query: 1182
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1072
effective length of database: 8,089,757
effective search space: 8672219504
effective search space used: 8672219504
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)