BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5893
(1182 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q14692|BMS1_HUMAN Ribosome biogenesis protein BMS1 homolog OS=Homo sapiens GN=BMS1 PE=1
SV=1
Length = 1282
Score = 532 bits (1371), Expect = e-150, Method: Compositional matrix adjust.
Identities = 269/487 (55%), Positives = 351/487 (72%), Gaps = 18/487 (3%)
Query: 476 IKDSIRDCFVTGKWKASEDASELLRLDDMDDDEELFGDFEDLETGEKHSGDKSGGGSGG- 534
+ +SIRDCFVTGKW+ +DA+++L +DEEL+GDFEDLETG+ H G KSG +
Sbjct: 750 VMNSIRDCFVTGKWEDDKDAAKVLA-----EDEELYGDFEDLETGDVHKG-KSGPNTQNE 803
Query: 535 -----VSGGGSGDDKPKTRAELMEKKRKLKEQFDAEYDDKDGGGNTYYDDLKTQATRQAE 589
V D++ + + ++KKRKLKE FDAEYD+ G +TY+DDLK + +QA+
Sbjct: 804 DIEKEVKEEIDPDEEESAKKKHLDKKRKLKEMFDAEYDE---GESTYFDDLKGEMQKQAQ 860
Query: 590 LNRQQFHDLDDNARVELEGFRAGLYIRVELDGMPCELIENFDPTYPLIVGGLQPGEETIG 649
LNR +F D DD ARV+ EGFR G+Y+R+E++ +PCE ++NFDP YP+I+GGL E +G
Sbjct: 861 LNRAEFEDQDDEARVQYEGFRPGMYVRIEIENVPCEFVQNFDPHYPIILGGLGNSEGNVG 920
Query: 650 CVRARVKKHRWYGKILKSGNPVIMSVGWRRFQTLPIYSKQEDNMRYRMLKYTPQHVACMA 709
V+ R+KKHRWY KILKS +P+I SVGWRRFQT+P+Y ++ N R R+LKYTPQH+ C A
Sbjct: 921 YVQMRLKKHRWYKKILKSRDPIIFSVGWRRFQTIPLYYIEDHNGRQRLLKYTPQHMHCGA 980
Query: 710 HFWGPITRSGTGFLAVQDVAKREPGFRVIATGTILDANQTAEVTKKLKLTGVPMKIYKKT 769
FWGPIT GTGFLA+Q V+ P FR+ ATG +LD +++ ++ KKLKLTG P KI+K T
Sbjct: 981 AFWGPITPQGTGFLAIQSVSGIMPDFRIAATGVVLDLDKSIKIVKKLKLTGFPYKIFKNT 1040
Query: 770 AFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGAFRATFEDKIMLSDIVFCRT 829
+FIK MFNS LEVAKFEGA IRTVSGIRGQIKKAL P+GAFRA+FEDK+++SDIVF RT
Sbjct: 1041 SFIKGMFNSALEVAKFEGAVIRTVSGIRGQIKKALRAPEGAFRASFEDKLLMSDIVFMRT 1100
Query: 830 WYKVDIPKLYNPVTSLLLPPEQKDSWTGMKTTGQLKRERGLHNDPQFDSMYTPIVRKPKT 889
WY V IP YNPVTSLL P +KD+W+GM+TTGQL+ G+ DS+Y PI+R+ K
Sbjct: 1101 WYPVSIPAFYNPVTSLLKPVGEKDTWSGMRTTGQLRLAHGVRLKANKDSLYKPILRQKKH 1160
Query: 890 MTKLKIPKALQKELPYHMKPKYKSKETPKPQ---RVAVIHSEREQKVASLMKMLRTNYSE 946
L IPKALQK LP+ KPK ++K P+ R AVI E+K+ +L+ L T +S+
Sbjct: 1161 FNSLHIPKALQKALPFKNKPKTQAKAGKVPKDRRRPAVIREPHERKILALLDALSTVHSQ 1220
Query: 947 KNSKEKQ 953
K K K+
Sbjct: 1221 KMKKAKE 1227
Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 63/90 (70%), Positives = 71/90 (78%)
Query: 983 DIFRTLRMPKVMGVLTHLDMLKNNKTLKTTKKMLKHRFWTEVYAGAKLFYLSGIVHGEYM 1042
+I + PK+MGVLTHLD K+NK LK TKK LKHRFWTEVY GAKLFYLSG+VHGEY
Sbjct: 169 NICQVHGFPKIMGVLTHLDSFKHNKQLKKTKKRLKHRFWTEVYPGAKLFYLSGMVHGEYQ 228
Query: 1043 KNEVKNLGRFIAVMKFRPLIWQTTHSYMLV 1072
E+ NLGRFI VMKFRPL WQT+H Y+L
Sbjct: 229 NQEIHNLGRFITVMKFRPLTWQTSHPYILA 258
Score = 127 bits (319), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 71/85 (83%)
Query: 391 AKQKNPKAFTFQSVIKGERKFRRKEDIQAKKHHVPQVDRTPLEPPPIVVAVVGPPQVGKS 450
A+++NPKAF QS ++ R F R +D++ KKHH+P VDRTPLEPPPIVV V+GPP+VGKS
Sbjct: 37 ARKRNPKAFAVQSAVRMARSFHRTQDLKTKKHHIPVVDRTPLEPPPIVVVVMGPPKVGKS 96
Query: 451 TLIRCLIKNFTKTPLSVIKGPVTLI 475
TLI+CLI+NFT+ L+ I+GPVT++
Sbjct: 97 TLIQCLIRNFTRQKLTEIRGPVTIV 121
Score = 127 bits (318), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 56/93 (60%), Positives = 69/93 (74%), Gaps = 2/93 (2%)
Query: 1083 LVGTTGNM--NCFSFQARVKKHRWYGKILKSGNPVIMSVGWRRFQTLPIYSKQEDNMRYR 1140
++G GN N Q R+KKHRWY KILKS +P+I SVGWRRFQT+P+Y ++ N R R
Sbjct: 908 ILGGLGNSEGNVGYVQMRLKKHRWYKKILKSRDPIIFSVGWRRFQTIPLYYIEDHNGRQR 967
Query: 1141 MLKYTPQHVACMAHFWGPITRSGTGFLAVQDVA 1173
+LKYTPQH+ C A FWGPIT GTGFLA+Q V+
Sbjct: 968 LLKYTPQHMHCGAAFWGPITPQGTGFLAIQSVS 1000
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/48 (81%), Positives = 43/48 (89%)
Query: 55 ITFIECNNDINSMIDISKVADLVLLLIDASFGFEMEIFEFLNICQVHG 102
+T IEC DIN MID++KVADLVL+LIDASFGFEME FEFLNICQVHG
Sbjct: 128 LTIIECGCDINMMIDLAKVADLVLMLIDASFGFEMETFEFLNICQVHG 175
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 299 FSDESADDNSSDEDETVEPKTHKDSKNPEEDTGLNWKSDLAQKAASAFLERQANIVNLAK 358
F DE++D + ++E + + DSK E L WK DL++KAA AFL +Q NL K
Sbjct: 634 FIDETSDIENLLKEEEDYKEENNDSK--ETSGALKWKEDLSRKAAEAFLRQQQAAPNLRK 691
Query: 359 YVYG 362
+YG
Sbjct: 692 LIYG 695
>sp|O94653|BMS1_SCHPO Ribosome biogenesis protein bms1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=bms1 PE=1 SV=2
Length = 1121
Score = 387 bits (993), Expect = e-106, Method: Compositional matrix adjust.
Identities = 218/523 (41%), Positives = 318/523 (60%), Gaps = 31/523 (5%)
Query: 480 IRDCFVTGKWKASEDASELLRLDDMDDDEELFGDFEDLETGEKHSGDK--SGGGSGGVSG 537
++ F+TG S + E + DDEE GDFEDLE E S ++ GS +
Sbjct: 591 LKSRFITGSLLDSIEGQEEVS----QDDEE--GDFEDLEDEENSSDNEMEESSGSSVTAE 644
Query: 538 GGSGDDKPKTRAELMEKKRK---------LKEQFDAEYDDKDGGGNTYYDDLKTQATRQA 588
D+ + E E RK +++ D E D D +Y + K + RQ
Sbjct: 645 NEESADEVDFQTEREENARKKEELRLRFEEEDRGDPEKKDVD-----WYTEEKEKIARQL 699
Query: 589 ELNRQQFHDLDDNARVELEGFRAGLYIRVELDGMPCELIENFDPTYPLIVGGLQPGEETI 648
+NR+ F D+D +R E+EG+RAG Y+R+ ++ +P E +E+FD YP++VGGL P E+
Sbjct: 700 VINREAFEDMDPESRAEIEGYRAGTYVRIVINDVPFEFVEHFDSRYPVVVGGLLPNEQRY 759
Query: 649 GCVRARVKKHRWYGKILKSGNPVIMSVGWRRFQTLPIYSKQEDNMRYRMLKYTPQHVACM 708
G V+ R+K+HRW+ KILK+ +P+I S+GWRRFQ++P+YS + R RMLKYTP+H+ C
Sbjct: 760 GLVQVRIKRHRWHKKILKTNDPLIFSMGWRRFQSIPVYSISDSRTRNRMLKYTPEHMHCF 819
Query: 709 AHFWGPITRSGTGFLAVQDVAK---REPGFRVIATGTILDANQTAEVTKKLKLTGVPMKI 765
F+GP +GF AVQ VA + FR+ ATG++L+ +Q+ ++ KKLKLTGVP KI
Sbjct: 820 GTFYGPFVAPNSGFCAVQSVANSFAKAGSFRIAATGSVLNIDQSTDIVKKLKLTGVPYKI 879
Query: 766 YKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGAFRATFEDKIMLSDIV 825
+K TAFIK MF+S LEVAKFEGA IRTVSGIRGQ+KKA+++ G FRATFEDKI++SDIV
Sbjct: 880 FKNTAFIKKMFSSPLEVAKFEGANIRTVSGIRGQVKKAVDQEHGHFRATFEDKILMSDIV 939
Query: 826 FCRTWYKVDIPKLYNPVTSLLLPPEQKDSWTGMKTTGQLKRERGLHNDPQFDSMYTPIVR 885
F R WY V + K VT+LL K W GM+ TG+++ E GL + +S Y IVR
Sbjct: 940 FLRAWYPVQVRKFCTMVTNLL--ETDKTEWNGMRLTGEVRHELGLKTPLRPNSQYQEIVR 997
Query: 886 KPKTMTKLKIPKALQKELPYHMKPKY---KSKETPKPQRVAVIHSEREQKVASLMKMLRT 942
+ LK+P +LQ +LP++ + K +SK T +R ++++E E+KV L++ + T
Sbjct: 998 PSRHFNPLKVPASLQAQLPFNSRQKALRPRSKPTYMQKRTVLLNAE-ERKVRDLLQKVMT 1056
Query: 943 NYSEKNSKEKQAMKARMVALKLRAKAAEEAKQQRQRVMKKDIF 985
+++K +K K A R + E+A +++R K + F
Sbjct: 1057 LHTDKEAKRKAKKAAEHERYHKRMQKEEQAYIEKKREEKAEWF 1099
Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 52/83 (62%), Positives = 64/83 (77%)
Query: 990 MPKVMGVLTHLDMLKNNKTLKTTKKMLKHRFWTEVYAGAKLFYLSGIVHGEYMKNEVKNL 1049
MP++MGVLTHLD+ K TL+ KK LKHRFWTE+Y GAKLFYLSG+++G Y E+ NL
Sbjct: 168 MPRIMGVLTHLDLFKKTSTLREAKKRLKHRFWTELYQGAKLFYLSGVLNGRYPDREILNL 227
Query: 1050 GRFIAVMKFRPLIWQTTHSYMLV 1072
RFI+VMKFRPL W+ H Y+L
Sbjct: 228 SRFISVMKFRPLRWRNQHPYLLA 250
Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 57/78 (73%)
Query: 1096 QARVKKHRWYGKILKSGNPVIMSVGWRRFQTLPIYSKQEDNMRYRMLKYTPQHVACMAHF 1155
Q R+K+HRW+ KILK+ +P+I S+GWRRFQ++P+YS + R RMLKYTP+H+ C F
Sbjct: 763 QVRIKRHRWHKKILKTNDPLIFSMGWRRFQSIPVYSISDSRTRNRMLKYTPEHMHCFGTF 822
Query: 1156 WGPITRSGTGFLAVQDVA 1173
+GP +GF AVQ VA
Sbjct: 823 YGPFVAPNSGFCAVQSVA 840
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 60/92 (65%), Gaps = 1/92 (1%)
Query: 395 NPKAFTFQSVIKGERKFRRKEDIQAKKHHVPQVDRTPLE-PPPIVVAVVGPPQVGKSTLI 453
NPKAF S + R+ R DI KK HVP VDRTP E PPP++VAV+GPP GKSTLI
Sbjct: 32 NPKAFAVASAGRMARQAMRTADISQKKLHVPMVDRTPDEAPPPVIVAVMGPPGTGKSTLI 91
Query: 454 RCLIKNFTKTPLSVIKGPVTLIIKDSIRDCFV 485
+ L++ ++K +S I GP+T++ R F+
Sbjct: 92 KSLVRRYSKYTISQITGPITVVAGKKRRITFL 123
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/48 (72%), Positives = 42/48 (87%)
Query: 55 ITFIECNNDINSMIDISKVADLVLLLIDASFGFEMEIFEFLNICQVHG 102
ITF+EC ND++SMID++K+ADLVLLLIDA+FGFEME EFLNI HG
Sbjct: 120 ITFLECPNDLSSMIDVAKIADLVLLLIDANFGFEMETMEFLNILAPHG 167
>sp|Q08965|BMS1_YEAST Ribosome biogenesis protein BMS1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BMS1 PE=1 SV=1
Length = 1183
Score = 384 bits (986), Expect = e-105, Method: Compositional matrix adjust.
Identities = 219/541 (40%), Positives = 328/541 (60%), Gaps = 41/541 (7%)
Query: 478 DSIRDCFVTGKWKASEDASELLRLDDMDDDEELFGDFEDLETG------EKHSGDKSGGG 531
D+I++ F+ +++ + + D + EEL+GDFEDLE G E +S +S
Sbjct: 629 DAIKERFLGAGILGNDNKT---KSDSNEGGEELYGDFEDLEDGNPSEQAEDNSDKESEDE 685
Query: 532 SGGVSGGGSGD------DKPKTRAELME--------KKRKLKEQFDAEY------DDKDG 571
G D D + + ME KK KL+ QF+ E DD++
Sbjct: 686 DENEDTNGDDDNSFTNFDAEEKKDLTMEQEREMNAAKKEKLRAQFEIEEGENFKEDDENN 745
Query: 572 GGNTYYDDLKTQATRQAELNRQQFHDLDDNARVELEGFRAGLYIRVELDGMPCELIENFD 631
+T+Y+ K + ++Q E+N ++ ++ R +EGF+AG Y+R+ + +P E ++NF+
Sbjct: 746 EYDTWYELQKAKISKQLEINNIEYQEMTPEQRQRIEGFKAGSYVRIVFEKVPMEFVKNFN 805
Query: 632 PTYPLIVGGLQPGEETIGCVRARVKKHRWYGKILKSGNPVIMSVGWRRFQTLPIYSKQED 691
P +P+++GGL P E G V+AR+++HRW+ KILK+ +P+++S+GWRRFQTLPIY+ +
Sbjct: 806 PKFPIVMGGLLPTEIKFGIVKARLRRHRWHKKILKTNDPLVLSLGWRRFQTLPIYTTTDS 865
Query: 692 NMRYRMLKYTPQHVACMAHFWGPITRSGTGFLAVQDVAKREP--GFRVIATGTILDANQT 749
R RMLKYTP+H C A F+GP+ T F VQ VA + GFR+ ATG + + +
Sbjct: 866 RTRTRMLKYTPEHTYCNAAFYGPLCSPNTPFCGVQIVANSDTGNGFRIAATGIVEEIDVN 925
Query: 750 AEVTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQG 809
E+ KKLKL G P KI+K TAFIKDMF+S +EVA+FEGA+I+TVSGIRG+IK+AL+KP+G
Sbjct: 926 IEIVKKLKLVGFPYKIFKNTAFIKDMFSSAMEVARFEGAQIKTVSGIRGEIKRALSKPEG 985
Query: 810 AFRATFEDKIMLSDIVFCRTWYKVDIPKLYNPVTSLLLPPEQKDSWTGMKTTGQLKRERG 869
+RA FEDKI++SDIV R+WY V + K YNPVTSLLL ++K W G++ TGQ++
Sbjct: 986 HYRAAFEDKILMSDIVILRSWYPVRVKKFYNPVTSLLL--KEKTEWKGLRLTGQIRAAMN 1043
Query: 870 LHNDPQFDSMYTPIVRKPKTMTKLKIPKALQKELPY-----HMKPKYKSKETPKPQRVAV 924
L DS Y I R + LK+PKA+QKELP+ MKP + K+T +R V
Sbjct: 1044 LETPSNPDSAYHKIERVERHFNGLKVPKAVQKELPFKSQIHQMKP--QKKKTYMAKRAVV 1101
Query: 925 IHSEREQKVASLMKMLRTNYSEKNSKEKQAMKARMVALKLRAKAAEEAKQQRQRVMKKDI 984
+ + ++ + + K+L + ++ + +++Q R LK AK EE K QR + KK+
Sbjct: 1102 LGGDEKKARSFIQKVLTISKAKDSKRKEQKASQRKERLKKLAK-MEEEKSQRDKEKKKEY 1160
Query: 985 F 985
F
Sbjct: 1161 F 1161
Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 57/99 (57%), Positives = 70/99 (70%)
Query: 990 MPKVMGVLTHLDMLKNNKTLKTTKKMLKHRFWTEVYAGAKLFYLSGIVHGEYMKNEVKNL 1049
MP+V+GV THLD+ K+ TL+ +KK LKHRFWTEVY GAKLFYLSG+++G Y E+ NL
Sbjct: 164 MPRVLGVATHLDLFKSQSTLRASKKRLKHRFWTEVYQGAKLFYLSGVINGRYPDREILNL 223
Query: 1050 GRFIAVMKFRPLIWQTTHSYMLVTYTVMLKLLRLVGTTG 1088
RFI+VMKFRPL W+ H YML L L+ T G
Sbjct: 224 SRFISVMKFRPLKWRNEHPYMLADRFTDLTHPELIETQG 262
Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 58/78 (74%)
Query: 1096 QARVKKHRWYGKILKSGNPVIMSVGWRRFQTLPIYSKQEDNMRYRMLKYTPQHVACMAHF 1155
+AR+++HRW+ KILK+ +P+++S+GWRRFQTLPIY+ + R RMLKYTP+H C A F
Sbjct: 826 KARLRRHRWHKKILKTNDPLVLSLGWRRFQTLPIYTTTDSRTRTRMLKYTPEHTYCNAAF 885
Query: 1156 WGPITRSGTGFLAVQDVA 1173
+GP+ T F VQ VA
Sbjct: 886 YGPLCSPNTPFCGVQIVA 903
Score = 94.0 bits (232), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 51/113 (45%), Positives = 70/113 (61%), Gaps = 7/113 (6%)
Query: 380 KVHRKRQAELTAKQK------NPKAFTFQSVIKGERKFRRKEDIQAKKHHVPQVDRTPLE 433
K HRK + + TAK+K N KAF + K R +R D+ +K HVP VDRTP +
Sbjct: 6 KQHRKAKEKNTAKKKLHTQGHNAKAFAVAAPGKMARTMQRSSDVNERKLHVPMVDRTPED 65
Query: 434 -PPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIKDSIRDCFV 485
PPP +VAVVGPP GK+TLIR L++ TK+ L+ I+GP+T++ R F+
Sbjct: 66 DPPPFIVAVVGPPGTGKTTLIRSLVRRMTKSTLNDIQGPITVVSGKHRRLTFL 118
Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 56/95 (58%), Gaps = 9/95 (9%)
Query: 11 VGCAKISRNSLCINIWNWFTKRVYPVCTAPNN--EGIHRQEFEIEPITFIEC-NNDINSM 67
VG + +L ++ TK P G HR+ +TF+EC +D+N+M
Sbjct: 75 VGPPGTGKTTLIRSLVRRMTKSTLNDIQGPITVVSGKHRR------LTFLECPADDLNAM 128
Query: 68 IDISKVADLVLLLIDASFGFEMEIFEFLNICQVHG 102
IDI+K+ADLVLLLID +FGFEME EFLNI Q HG
Sbjct: 129 IDIAKIADLVLLLIDGNFGFEMETMEFLNIAQHHG 163
>sp|A8MV67|YO021_HUMAN Putative BMS1-like protein ENSP00000383088 OS=Homo sapiens PE=5
SV=1
Length = 101
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 58/101 (57%), Positives = 78/101 (77%)
Query: 613 LYIRVELDGMPCELIENFDPTYPLIVGGLQPGEETIGCVRARVKKHRWYGKILKSGNPVI 672
+Y+RVE++ +PCE ++N DP YP+I+GGL E +G V+ R+KKHRWY KILKS +P+I
Sbjct: 1 MYVRVEIENVPCEFVQNIDPHYPIILGGLGNSEGNVGYVQMRLKKHRWYKKILKSRDPII 60
Query: 673 MSVGWRRFQTLPIYSKQEDNMRYRMLKYTPQHVACMAHFWG 713
SVGWRRFQT+P+Y ++ N R R+LKYTPQH+ C A FW
Sbjct: 61 FSVGWRRFQTIPLYYIEDHNGRQRLLKYTPQHMHCGAAFWA 101
Score = 100 bits (248), Expect = 9e-20, Method: Composition-based stats.
Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 2/77 (2%)
Query: 1083 LVGTTGNM--NCFSFQARVKKHRWYGKILKSGNPVIMSVGWRRFQTLPIYSKQEDNMRYR 1140
++G GN N Q R+KKHRWY KILKS +P+I SVGWRRFQT+P+Y ++ N R R
Sbjct: 25 ILGGLGNSEGNVGYVQMRLKKHRWYKKILKSRDPIIFSVGWRRFQTIPLYYIEDHNGRQR 84
Query: 1141 MLKYTPQHVACMAHFWG 1157
+LKYTPQH+ C A FW
Sbjct: 85 LLKYTPQHMHCGAAFWA 101
>sp|A8MTN0|YI027_HUMAN Putative BMS1-like protein ENSP00000382360 OS=Homo sapiens PE=5
SV=1
Length = 101
Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats.
Identities = 58/101 (57%), Positives = 78/101 (77%)
Query: 613 LYIRVELDGMPCELIENFDPTYPLIVGGLQPGEETIGCVRARVKKHRWYGKILKSGNPVI 672
+Y+RVE++ +PCE ++NFDP YP+I+GGL E +G V+ R+KKHRWY KILKS +P+I
Sbjct: 1 MYVRVEIENVPCEFVQNFDPHYPIILGGLGNSEGNVGHVQMRLKKHRWYKKILKSQDPII 60
Query: 673 MSVGWRRFQTLPIYSKQEDNMRYRMLKYTPQHVACMAHFWG 713
SVGWRRFQT+ +Y ++ N R R+LKYTPQH+ C A FW
Sbjct: 61 FSVGWRRFQTILLYYIEDHNGRQRLLKYTPQHIHCGAAFWA 101
Score = 97.4 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 43/77 (55%), Positives = 54/77 (70%), Gaps = 2/77 (2%)
Query: 1083 LVGTTGNM--NCFSFQARVKKHRWYGKILKSGNPVIMSVGWRRFQTLPIYSKQEDNMRYR 1140
++G GN N Q R+KKHRWY KILKS +P+I SVGWRRFQT+ +Y ++ N R R
Sbjct: 25 ILGGLGNSEGNVGHVQMRLKKHRWYKKILKSQDPIIFSVGWRRFQTILLYYIEDHNGRQR 84
Query: 1141 MLKYTPQHVACMAHFWG 1157
+LKYTPQH+ C A FW
Sbjct: 85 LLKYTPQHIHCGAAFWA 101
>sp|A8MXU9|YO022_HUMAN Putative BMS1-like protein ENSP00000383048 OS=Homo sapiens PE=5
SV=1
Length = 101
Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats.
Identities = 57/101 (56%), Positives = 76/101 (75%)
Query: 613 LYIRVELDGMPCELIENFDPTYPLIVGGLQPGEETIGCVRARVKKHRWYGKILKSGNPVI 672
+Y+RVE++ +PCE ++N DP YP+I+GGL E +G V +KKHRWY KILKS +P+I
Sbjct: 1 MYVRVEIENVPCEFVQNIDPHYPIILGGLGNSEGNVGYVEMHLKKHRWYKKILKSRDPII 60
Query: 673 MSVGWRRFQTLPIYSKQEDNMRYRMLKYTPQHVACMAHFWG 713
SVGWRRFQT+P+Y ++ N R R+LKYTPQH+ C A FW
Sbjct: 61 FSVGWRRFQTIPLYYIEDHNGRQRLLKYTPQHMHCGAAFWA 101
Score = 96.3 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 54/77 (70%), Gaps = 2/77 (2%)
Query: 1083 LVGTTGNM--NCFSFQARVKKHRWYGKILKSGNPVIMSVGWRRFQTLPIYSKQEDNMRYR 1140
++G GN N + +KKHRWY KILKS +P+I SVGWRRFQT+P+Y ++ N R R
Sbjct: 25 ILGGLGNSEGNVGYVEMHLKKHRWYKKILKSRDPIIFSVGWRRFQTIPLYYIEDHNGRQR 84
Query: 1141 MLKYTPQHVACMAHFWG 1157
+LKYTPQH+ C A FW
Sbjct: 85 LLKYTPQHMHCGAAFWA 101
>sp|Q5XGY1|TSR1_XENLA Pre-rRNA-processing protein TSR1 homolog OS=Xenopus laevis GN=tsr1
PE=2 SV=1
Length = 815
Score = 107 bits (268), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 117/228 (51%), Gaps = 5/228 (2%)
Query: 607 EGFRAGLYIRVELDGMPCELIENFDPTYPLIVGGLQPGEETIGCVRARVKKHRWYGKILK 666
EG G Y+ V + +P ++E+F PL++ L P E+ + + V++H + +K
Sbjct: 561 EGAMVGWYVTVHISAVPVSVMEHFKHGLPLVLCSLLPHEQKMSVMNMLVRRHPGNNEPIK 620
Query: 667 SGNPVIMSVGWRRFQTLPIYSKQEDNMRYRMLKYTPQHVACMAHFWGPITRSGTGFLAVQ 726
+ +I G+RRF+ P++S+ +++ ++ + + + PIT L +
Sbjct: 621 AKEELIFHCGFRRFRASPLFSQHSSADKHKSERFLRSDTSVVVTVYAPITFPPASVLVFK 680
Query: 727 DVAKREPGFR-VIATGTILDANQTAEVTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKF 785
+R G + ++ATG++L+ N V K++ L+G P KI K+TA ++ MF + +V F
Sbjct: 681 ---QRYNGMQDLVATGSLLNVNPDRIVIKRIVLSGHPFKIMKRTAVVRYMFFNREDVLWF 737
Query: 786 EGAKIRTVSGIRGQIKKALNKPQGAFRATFEDKIMLSDIVFCRTWYKV 833
+ ++RT G RG IK+ L G + F+ ++ D V + +V
Sbjct: 738 KPVELRTKWGRRGHIKEPLGT-HGHMKCHFDGQLKSQDTVLMNLYKRV 784
>sp|Q5SWD9|TSR1_MOUSE Pre-rRNA-processing protein TSR1 homolog OS=Mus musculus GN=Tsr1
PE=2 SV=1
Length = 803
Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 115/244 (47%), Gaps = 3/244 (1%)
Query: 605 ELEGFRAGLYIRVELDGMPCELIENFDPTYPLIVGGLQPGEETIGCVRARVKKHRWYGKI 664
E EG G Y+ + + +P ++E F PLI L P E+ + + V ++ +
Sbjct: 547 EAEGAEVGWYVTLHVSDVPVSVVEYFRQGAPLIAFSLLPYEQKMSVLNMVVSRNPGNTEP 606
Query: 665 LKSGNPVIMSVGWRRFQTLPIYSKQEDNMRYRMLKYTPQHVACMAHFWGPITRSGTGFLA 724
+K+ +I G+RRF+ P++S+ +++ ++ A + + PIT L
Sbjct: 607 VKAKEELIFHCGFRRFRASPLFSQHTAADKHKFQRFLTADAAFVVTVFAPITFPPASVLL 666
Query: 725 VQDVAKREPGFRVIATGTILDANQTAEVTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAK 784
+ +R +IATG + + V K++ L+G P KI+ K A ++ MF + +V
Sbjct: 667 FKQ--RRNGMHSLIATGHLFSVDPDRMVIKRVVLSGHPFKIFTKMAVVRYMFFNREDVMW 724
Query: 785 FEGAKIRTVSGIRGQIKKALNKPQGAFRATFEDKIMLSDIVFCRTWYKVDIPKLYNPVTS 844
F+ ++RT G RG IK+ L G + +F+ K+ D V + +V Y+P
Sbjct: 725 FKPVELRTKWGRRGHIKEPLGT-HGHMKCSFDGKLKSQDTVLMNLYKRVFPKWTYDPYVP 783
Query: 845 LLLP 848
+P
Sbjct: 784 EPVP 787
>sp|Q9VP47|TSR1_DROME Pre-rRNA-processing protein TSR1 homolog OS=Drosophila melanogaster
GN=CG7338 PE=1 SV=1
Length = 814
Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 117/255 (45%), Gaps = 24/255 (9%)
Query: 594 QFHDLDDNARV------ELEGFRAGLYIRVELDGMP---------CELIENFDPTYPLIV 638
QF + D R E EG GLY+ + + +P +L++N +IV
Sbjct: 534 QFQNFDRTKRRILNEAKEFEGVLPGLYVTLYVINVPESRWNAFKSAQLMDN------IIV 587
Query: 639 GGLQPGEETIGCVRARVKKHRWYGKILKSGNPVIMSVGWRRFQTLPIYSKQEDNMRYRML 698
G+ P E + + +++ LKS +I+ G+RRF PIYS+ + +++
Sbjct: 588 YGMLPHEHQMCVMNVVLQRMPDSEVPLKSKEQLIIQCGYRRFVVNPIYSQHTNGDKHKFE 647
Query: 699 KYTPQHVACMAHFWGPITRSGTGFLAVQDVAKREPGFRVIATGTILDANQTAEVTKKLKL 758
+Y + A F+ PI LA + + ++A G +L N V K++ L
Sbjct: 648 RYFRPYETVCATFYAPIQFPPAPVLAFK--VNPDSTLALVARGRLLSCNPDRIVLKRVVL 705
Query: 759 TGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGAFRATFEDK 818
+G PM+I +K+A I+ MF +V F+ K+RT G G IK++L G + F+ +
Sbjct: 706 SGHPMRINRKSASIRYMFFYKEDVEYFKPVKLRTKCGRLGHIKESLGT-HGHMKCYFDGQ 764
Query: 819 IMLSDIVFCRTWYKV 833
+ D F + +V
Sbjct: 765 LRSYDTAFMYLYKRV 779
Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%)
Query: 1109 LKSGNPVIMSVGWRRFQTLPIYSKQEDNMRYRMLKYTPQHVACMAHFWGPITRSGTGFLA 1168
LKS +I+ G+RRF PIYS+ + +++ +Y + A F+ PI LA
Sbjct: 614 LKSKEQLIIQCGYRRFVVNPIYSQHTNGDKHKFERYFRPYETVCATFYAPIQFPPAPVLA 673
Query: 1169 VQ 1170
+
Sbjct: 674 FK 675
>sp|Q54YA7|TSR1_DICDI Pre-rRNA-processing protein TSR1 homolog OS=Dictyostelium
discoideum GN=tsr1 PE=3 SV=1
Length = 826
Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 77/263 (29%), Positives = 115/263 (43%), Gaps = 16/263 (6%)
Query: 594 QFHDLDDNARVELEGF-----RAGLYIRVELDGMPCELIENFDP---TYPLIVGGLQPGE 645
QFH + + R + + +Y+R+ L P +L+E T P + GL E
Sbjct: 567 QFHSFNQSMRASIAILDNAPAKPDMYVRIHLVNGPKQLVERNTTAITTKPEVAVGLYRYE 626
Query: 646 ETIGCVRARVKKHRWYGKILKSGNPVIMSVGWRRFQTLPIYSKQEDNM-RYRMLKYTPQH 704
I + V+KH+ Y + ++S V GWR+F T PIYS N + + K+
Sbjct: 627 NKISLLHFSVEKHKSYEETVRSKEEVYFHFGWRKFSTSPIYSISSPNCDKQKFEKFLLPA 686
Query: 705 VACMAHFWGPITRSGTGFLAVQDVAKREPGFRVIATGTILDANQTAEVTKKLKLTGVPMK 764
MA +GPIT L E ++ATG + N + K++ LTGV K
Sbjct: 687 RNTMATIYGPITYPPAPLLIFNGKDCNE----LVATGYLSSVNPDRIICKRIILTGVIAK 742
Query: 765 -IYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGAFRATFEDKIMLSD 823
I KK +KDMF ++ F+ ++ T G G IK+ L G + F+ + D
Sbjct: 743 SISKKFVTVKDMFYYPEDINWFKKVELYTKMGRVGHIKEPLGT-HGRMKCQFDGTMNQQD 801
Query: 824 IVFCRTWYKVDIPKLYNPVTSLL 846
V C YK PK +SLL
Sbjct: 802 TV-CMNLYKRVYPKWIKDDSSLL 823
Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 1099 VKKHRWYGKILKSGNPVIMSVGWRRFQTLPIYSKQEDNM-RYRMLKYTPQHVACMAHFWG 1157
V+KH+ Y + ++S V GWR+F T PIYS N + + K+ MA +G
Sbjct: 636 VEKHKSYEETVRSKEEVYFHFGWRKFSTSPIYSISSPNCDKQKFEKFLLPARNTMATIYG 695
Query: 1158 PIT 1160
PIT
Sbjct: 696 PIT 698
>sp|Q5VTM2|AGAP9_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 9
OS=Homo sapiens GN=AGAP9 PE=2 SV=2
Length = 703
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/48 (79%), Positives = 43/48 (89%)
Query: 55 ITFIECNNDINSMIDISKVADLVLLLIDASFGFEMEIFEFLNICQVHG 102
+T IEC DIN MID++KVADLVL+LIDASFGFEME+FEFLNICQ HG
Sbjct: 23 LTIIECGCDINMMIDLAKVADLVLMLIDASFGFEMEMFEFLNICQAHG 70
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%)
Query: 983 DIFRTLRMPKVMGVLTHLDMLKNNKTLKTTKKMLKHRFWTEVY 1025
+I + PK++GVLTHLD K+NK LK TKK LKHRFWTEVY
Sbjct: 64 NICQAHGFPKILGVLTHLDSFKHNKQLKKTKKRLKHRFWTEVY 106
>sp|Q2NL82|TSR1_HUMAN Pre-rRNA-processing protein TSR1 homolog OS=Homo sapiens GN=TSR1
PE=1 SV=1
Length = 804
Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 116/241 (48%), Gaps = 3/241 (1%)
Query: 608 GFRAGLYIRVELDGMPCELIENFDPTYPLIVGGLQPGEETIGCVRARVKKHRWYGKILKS 667
G G Y+ + + +P ++E F PLI L P E+ + + V++ + +K+
Sbjct: 551 GAEVGWYVTLHVSEVPVSVVECFRQGTPLIAFSLLPHEQKMSVLNMVVRRDPGNTEPVKA 610
Query: 668 GNPVIMSVGWRRFQTLPIYSKQEDNMRYRMLKYTPQHVACMAHFWGPITRSGTGFLAVQD 727
+I G+RRF+ P++S+ ++++ ++ +A +A + PIT L +
Sbjct: 611 KEELIFHCGFRRFRASPLFSQHTAADKHKLQRFLTADMALVATVYAPITFPPASVLLFKQ 670
Query: 728 VAKREPGFRVIATGTILDANQTAEVTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEG 787
K +IATG ++ + V K++ L+G P KI+ K A ++ MF + +V F+
Sbjct: 671 --KSNGMHSLIATGHLMSVDPDRMVIKRVVLSGHPFKIFTKMAVVRYMFFNREDVLWFKP 728
Query: 788 AKIRTVSGIRGQIKKALNKPQGAFRATFEDKIMLSDIVFCRTWYKVDIPKLYNPVTSLLL 847
++RT G RG IK+ L G + +F+ K+ D V + +V Y+P +
Sbjct: 729 VELRTKWGRRGHIKEPLGT-HGHMKCSFDGKLKSQDTVLMNLYKRVFPKWTYDPYVPEPV 787
Query: 848 P 848
P
Sbjct: 788 P 788
>sp|Q5R434|TSR1_PONAB Pre-rRNA-processing protein TSR1 homolog OS=Pongo abelii GN=TSR1
PE=2 SV=1
Length = 805
Score = 87.0 bits (214), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 116/241 (48%), Gaps = 3/241 (1%)
Query: 608 GFRAGLYIRVELDGMPCELIENFDPTYPLIVGGLQPGEETIGCVRARVKKHRWYGKILKS 667
G G Y+ + + +P ++E F PLI L P E+ + + V++ + +K+
Sbjct: 552 GAEVGCYVTLHVSEVPVSVVECFRQGTPLIAFSLLPHEQKMSVLNMVVRRDPGNTEPVKA 611
Query: 668 GNPVIMSVGWRRFQTLPIYSKQEDNMRYRMLKYTPQHVACMAHFWGPITRSGTGFLAVQD 727
+I G+RRF+ P++S+ ++++ ++ +A +A + PIT L +
Sbjct: 612 KEELIFHCGFRRFRASPLFSQHTAADKHKLQRFLTADMALVATVYAPITFPPASVLLFKQ 671
Query: 728 VAKREPGFRVIATGTILDANQTAEVTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEG 787
K +IATG ++ + V K++ L+G P+K++ K A ++ MF + +V F+
Sbjct: 672 --KSNGMHSLIATGHLMSVDPDRMVIKRVVLSGHPLKMFTKMAVVRYMFFNREDVLWFKP 729
Query: 788 AKIRTVSGIRGQIKKALNKPQGAFRATFEDKIMLSDIVFCRTWYKVDIPKLYNPVTSLLL 847
++RT G RG IK+ L G + +F K+ D V + +V Y+P +
Sbjct: 730 VELRTKWGRRGHIKEPLGT-HGHMKCSFNGKLKSQDTVLMNLYKRVFPKWTYDPYVPEPV 788
Query: 848 P 848
P
Sbjct: 789 P 789
>sp|O13956|TSR1_SCHPO Ribosome biogenesis protein tsr1 homolog OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC23H4.15 PE=3 SV=1
Length = 783
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 105/221 (47%), Gaps = 8/221 (3%)
Query: 610 RAGLYIRVELDGMPCELIENFD-PTYPLIVGGLQPGEETIGCVRARVKKHRWYGKILKSG 668
+ G + VEL +P E+ E ++ P L++ L E + + +H Y + ++S
Sbjct: 543 KPGKAVYVELRNVPIEIFEYYNKPWNLLVLYSLLQYENKLTVSQFTAMQHSEYEEPIESK 602
Query: 669 NPVIMSVGWRRFQTLPIYS----KQEDNMRYRMLKYTPQHVACMAHFWGPITRSGTGFLA 724
+++ +G RRF P+YS N + +Y P A +A PI +
Sbjct: 603 EELLLQIGPRRFMVRPLYSDPTASGASNNLQKYHRYLPPKQAVIASVISPIVFGNVPIIM 662
Query: 725 VQDVAKREPGFRVIATGTILDANQTAEVTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAK 784
+ + + R+ ATG+ ++ + + + K+ LTG P K++KK I+ MF + +V
Sbjct: 663 FKKSS--DNSLRLAATGSYVNCDTNSVIAKRAVLTGHPFKVHKKLVTIRYMFFNPEDVIW 720
Query: 785 FEGAKIRTVSGIRGQIKKALNKPQGAFRATFEDKIMLSDIV 825
F+ ++ T G G IK+ L G F+ATF KI + D V
Sbjct: 721 FKPIQLFTKQGRTGYIKEPLGT-HGYFKATFNGKITVQDTV 760
>sp|Q61WR2|TSR1_CAEBR Pre-rRNA-processing protein TSR1 homolog OS=Caenorhabditis briggsae
GN=tag-151 PE=3 SV=1
Length = 788
Score = 84.7 bits (208), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 109/224 (48%), Gaps = 6/224 (2%)
Query: 612 GLYIRVELDGMPCELIENFDPTYPLIVGGLQPGEETIGCVRARVKKH-RWYGKILKSGNP 670
G++ V ++ +P ++E + T L++ L P E+ + + +KKH I
Sbjct: 532 GVFASVYIENVPVSVMEAYKETKNLVLFQLLPHEQKMSILNMVLKKHPSCTVPIGSEDQK 591
Query: 671 VIMSVGWRRFQTLPIYSKQEDNMRYRMLKYTPQHVACMAHFWGPITRSGTGFLAV-QDVA 729
I VG+R+F+ + S ++++ ++ P +A + PIT + L QD
Sbjct: 592 FIFYVGFRQFEAHAVLSSNTPGDKFKLERFMPTEKTFVATVYAPITFNPATVLCFRQDDK 651
Query: 730 KREPGFRVIATGTILDANQTAEVTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAK 789
R+ ++ATG++LD N V K+ L+G P KI ++ ++ MF + ++ F+ +
Sbjct: 652 GRQ---ELVATGSVLDTNPDRIVLKRTVLSGHPYKINRRAVVVRYMFFNREDIDWFKPVE 708
Query: 790 IRTVSGIRGQIKKALNKPQGAFRATFEDKIMLSDIVFCRTWYKV 833
+ T SG RG IK+A+ G + F+ ++ D V + +V
Sbjct: 709 LYTPSGRRGHIKEAVGT-HGHMKCRFDQQLNAQDSVMLNLYKRV 751
>sp|Q19329|TSR1_CAEEL Pre-rRNA-processing protein TSR1 homolog OS=Caenorhabditis elegans
GN=tag-151 PE=3 SV=1
Length = 785
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 108/225 (48%), Gaps = 7/225 (3%)
Query: 612 GLYIRVELDGMPCELIENFDPTYPLIVGGLQPGEETIGCVRARVKKHRWYGKILKS--GN 669
G + V ++ +P ++E + L++ L P E + + +KKH + S
Sbjct: 528 GAFASVFIENVPVAVLEAYKDAKNLVLFQLLPHEHKMSVLNMVLKKHPSCTIPITSDQNQ 587
Query: 670 PVIMSVGWRRFQTLPIYSKQEDNMRYRMLKYTPQHVACMAHFWGPITRSGTGFLAV-QDV 728
I VG+R+F+ ++S ++++ ++ P +A + PIT + L QD
Sbjct: 588 KFIFYVGFRQFEANAVFSSNTPGDKFKLERFMPTEKTFVATVYAPITFNPATVLCFRQDD 647
Query: 729 AKREPGFRVIATGTILDANQTAEVTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGA 788
R+ ++ATG+ILD+N V K+ L G P KI ++ ++ MF + ++ F+
Sbjct: 648 KGRQ---ELVATGSILDSNPDRIVLKRTVLAGHPYKINRRAVVVRYMFFNREDIEWFKPV 704
Query: 789 KIRTVSGIRGQIKKALNKPQGAFRATFEDKIMLSDIVFCRTWYKV 833
++ T SG RG IK+A+ G + F+ ++ D V + +V
Sbjct: 705 ELYTPSGRRGHIKEAVGT-HGNMKCRFDQQLNAQDSVMLNLYKRV 748
>sp|Q07381|TSR1_YEAST Ribosome biogenesis protein TSR1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TSR1 PE=1 SV=1
Length = 788
Score = 73.9 bits (180), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 107/248 (43%), Gaps = 32/248 (12%)
Query: 606 LEGFRAGLYIRVELDGMPCELIENF-DPTYPLI-VGGLQPGEETIGCVRARVKKHRWYGK 663
+ G R ++IR P L+E DP L V GL E V +++ Y K
Sbjct: 552 IAGDRIRMFIR-----FPKFLLEKIQDPKQLLFAVYGLLLHEHKNAVVNFSLQRWEQYDK 606
Query: 664 ILKSGNPVIMSVGWRRFQTLPIYSKQEDNMRYRMLKYTPQHVACMAHFWGPITRSGTGFL 723
+ S P+++ G RR+ P++S+ + +P +V F P T S +
Sbjct: 607 PVPSQEPIVVQYGVRRYTIQPLFSQGSN---------SPNNVHKYERFLHPDTVSVATCI 657
Query: 724 AVQDVAKREPGF-----------RVIATGTILDANQTAEVTKKLKLTGVPMKIYKKTAFI 772
A D + F +I GT L+A+ + + K+ LTG P + +K +
Sbjct: 658 APVDFTQSPAIFFKPSPTDAKNIELIGHGTFLNADHSRILAKRAILTGHPFRFHKTVVTV 717
Query: 773 KDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGAFRATFEDKIMLSDIV----FCR 828
+ MF +V F+ + T SG G IK++L G F+ATF+ K+ D+V + R
Sbjct: 718 RYMFFRPEDVEWFKSIPLFTKSGRSGFIKESLGT-HGYFKATFDGKLSAQDVVAMSLYKR 776
Query: 829 TWYKVDIP 836
W +P
Sbjct: 777 MWPMPSLP 784
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 461,792,109
Number of Sequences: 539616
Number of extensions: 21890059
Number of successful extensions: 409979
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2953
Number of HSP's successfully gapped in prelim test: 2191
Number of HSP's that attempted gapping in prelim test: 194495
Number of HSP's gapped (non-prelim): 82052
length of query: 1182
length of database: 191,569,459
effective HSP length: 129
effective length of query: 1053
effective length of database: 121,958,995
effective search space: 128422821735
effective search space used: 128422821735
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 67 (30.4 bits)