Query psy5893
Match_columns 1182
No_of_seqs 793 out of 2488
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 20:57:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5893.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5893hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5192 BMS1 GTP-binding prote 100.0 1E-113 2E-118 972.0 22.9 602 316-991 463-1071(1077)
2 PF04950 DUF663: Protein of un 100.0 1.5E-92 3.2E-97 789.6 7.6 289 544-833 6-297 (297)
3 KOG1980|consensus 100.0 4.3E-76 9.3E-81 677.9 20.2 285 544-839 463-748 (754)
4 COG5192 BMS1 GTP-binding prote 100.0 3.5E-70 7.6E-75 618.9 13.0 89 984-1072 157-245 (1077)
5 COG5177 Uncharacterized conser 100.0 5.1E-61 1.1E-65 539.3 11.4 286 546-841 475-765 (769)
6 PF04950 DUF663: Protein of un 99.9 3.3E-29 7.1E-34 280.9 0.1 148 1009-1176 50-197 (297)
7 KOG1951|consensus 99.3 7.3E-12 1.6E-16 120.6 8.4 103 894-996 1-107 (115)
8 cd01882 BMS1 Bms1. Bms1 is an 99.3 7E-12 1.5E-16 136.6 7.1 92 984-1075 127-218 (225)
9 COG1126 GlnQ ABC-type polar am 99.1 6E-11 1.3E-15 126.9 5.0 69 420-492 14-91 (240)
10 COG3839 MalK ABC-type sugar tr 99.1 7.1E-11 1.5E-15 135.2 5.5 76 410-490 6-87 (338)
11 COG3842 PotA ABC-type spermidi 99.0 1.5E-10 3.2E-15 133.2 5.8 68 420-491 17-90 (352)
12 COG1116 TauB ABC-type nitrate/ 99.0 1.9E-10 4.1E-15 125.8 5.6 67 421-491 16-88 (248)
13 COG3638 ABC-type phosphate/pho 99.0 2.3E-10 5E-15 123.8 5.2 76 412-491 8-94 (258)
14 COG2884 FtsE Predicted ATPase 99.0 3.3E-10 7.1E-15 119.1 4.2 79 409-491 3-92 (223)
15 COG1136 SalX ABC-type antimicr 99.0 4.5E-10 9.7E-15 122.3 4.9 68 421-492 18-97 (226)
16 COG1135 AbcC ABC-type metal io 98.9 1.6E-09 3.6E-14 121.1 5.1 70 421-494 19-99 (339)
17 COG1120 FepC ABC-type cobalami 98.9 1.7E-09 3.7E-14 119.9 4.8 69 414-487 9-85 (258)
18 COG1125 OpuBA ABC-type proline 98.9 1.3E-09 2.8E-14 119.0 3.8 73 410-487 4-84 (309)
19 COG1117 PstB ABC-type phosphat 98.8 1.9E-09 4.2E-14 115.2 4.4 69 420-490 19-100 (253)
20 COG1127 Ttg2A ABC-type transpo 98.8 3.4E-09 7.3E-14 115.2 5.6 68 421-492 21-99 (263)
21 KOG0672|consensus 98.8 1.2E-09 2.7E-14 113.3 0.2 94 7-120 109-202 (218)
22 cd03226 ABC_cobalt_CbiO_domain 98.7 9.1E-09 2E-13 110.0 4.9 62 422-487 14-80 (205)
23 COG3840 ThiQ ABC-type thiamine 98.7 7.7E-09 1.7E-13 108.3 4.1 63 426-492 17-85 (231)
24 COG1121 ZnuC ABC-type Mn/Zn tr 98.7 9E-09 1.9E-13 113.8 4.7 73 413-490 10-89 (254)
25 COG1124 DppF ABC-type dipeptid 98.7 1.1E-08 2.3E-13 111.7 5.1 62 422-487 21-91 (252)
26 TIGR02314 ABC_MetN D-methionin 98.7 1.3E-08 2.9E-13 117.8 5.4 66 422-491 19-95 (343)
27 cd03263 ABC_subfamily_A The AB 98.7 1.5E-08 3.2E-13 109.3 5.3 66 421-490 15-87 (220)
28 PRK11650 ugpC glycerol-3-phosp 98.7 1.3E-08 2.9E-13 118.3 5.3 67 421-491 17-89 (356)
29 COG1131 CcmA ABC-type multidru 98.7 1.6E-08 3.5E-13 114.7 5.8 68 420-491 17-91 (293)
30 COG1118 CysA ABC-type sulfate/ 98.7 1.3E-08 2.7E-13 114.0 4.7 66 422-491 16-90 (345)
31 TIGR01166 cbiO cobalt transpor 98.7 1.4E-08 3.1E-13 107.2 4.4 62 422-487 6-77 (190)
32 TIGR00960 3a0501s02 Type II (G 98.7 1.7E-08 3.8E-13 108.5 5.1 65 422-490 17-92 (216)
33 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.7 2E-08 4.4E-13 108.1 5.1 65 422-490 18-94 (218)
34 TIGR02315 ABC_phnC phosphonate 98.6 2.3E-08 4.9E-13 109.4 5.2 65 422-490 16-91 (243)
35 COG0411 LivG ABC-type branched 98.6 5.9E-09 1.3E-13 113.6 0.5 69 420-492 16-93 (250)
36 TIGR02673 FtsE cell division A 98.6 2.6E-08 5.7E-13 106.9 5.3 65 422-490 16-91 (214)
37 cd03259 ABC_Carb_Solutes_like 98.6 2.5E-08 5.5E-13 107.1 5.1 64 422-489 14-83 (213)
38 TIGR02868 CydC thiol reductant 98.6 2.9E-08 6.2E-13 120.8 6.1 87 410-500 337-430 (529)
39 cd03265 ABC_DrrA DrrA is the A 98.6 2.8E-08 6E-13 107.4 5.4 65 422-490 14-85 (220)
40 cd03269 ABC_putative_ATPase Th 98.6 2.7E-08 5.8E-13 106.7 5.2 65 422-490 14-82 (210)
41 cd03292 ABC_FtsE_transporter F 98.6 2.8E-08 6.1E-13 106.6 5.2 65 422-490 15-90 (214)
42 cd03235 ABC_Metallic_Cations A 98.6 1.9E-08 4.1E-13 108.1 3.8 64 422-489 13-79 (213)
43 PRK13646 cbiO cobalt transport 98.6 2.7E-08 5.8E-13 112.3 5.1 62 422-487 21-94 (286)
44 COG4619 ABC-type uncharacteriz 98.6 1.7E-08 3.8E-13 104.4 3.2 66 422-491 17-90 (223)
45 PRK13647 cbiO cobalt transport 98.6 2.7E-08 5.7E-13 111.6 5.0 62 422-487 19-88 (274)
46 cd03257 ABC_NikE_OppD_transpor 98.6 3.5E-08 7.5E-13 106.8 5.7 62 422-487 19-91 (228)
47 cd03261 ABC_Org_Solvent_Resist 98.6 2.9E-08 6.3E-13 108.3 5.1 65 422-490 14-89 (235)
48 cd03224 ABC_TM1139_LivF_branch 98.6 3E-08 6.5E-13 107.0 5.2 66 422-491 14-88 (222)
49 PRK11432 fbpC ferric transport 98.6 2.7E-08 5.9E-13 115.6 5.2 66 422-491 20-91 (351)
50 cd03262 ABC_HisP_GlnQ_permease 98.6 3.3E-08 7.2E-13 105.9 5.5 65 422-490 14-88 (213)
51 PRK13537 nodulation ABC transp 98.6 3E-08 6.4E-13 113.1 5.3 66 421-490 20-92 (306)
52 cd03293 ABC_NrtD_SsuB_transpor 98.6 3E-08 6.4E-13 107.2 5.0 65 422-490 18-85 (220)
53 PRK10908 cell division protein 98.6 3.2E-08 6.8E-13 107.1 5.2 65 421-489 15-90 (222)
54 PRK11831 putative ABC transpor 98.6 2.8E-08 6.2E-13 111.0 4.9 65 422-490 21-96 (269)
55 cd03256 ABC_PhnC_transporter A 98.6 3.5E-08 7.6E-13 107.7 5.5 65 422-490 15-90 (241)
56 TIGR01188 drrA daunorubicin re 98.6 2.3E-08 5.1E-13 113.6 4.2 65 422-490 7-78 (302)
57 cd03296 ABC_CysA_sulfate_impor 98.6 3.6E-08 7.8E-13 108.0 5.4 65 422-490 16-86 (239)
58 PRK11629 lolD lipoprotein tran 98.6 3.4E-08 7.4E-13 107.7 5.2 65 422-490 23-99 (233)
59 TIGR02211 LolD_lipo_ex lipopro 98.6 3.3E-08 7.3E-13 106.6 5.0 65 422-490 19-95 (221)
60 cd03225 ABC_cobalt_CbiO_domain 98.6 2.5E-08 5.4E-13 106.8 4.0 62 422-487 15-84 (211)
61 cd03258 ABC_MetN_methionine_tr 98.6 3.3E-08 7.2E-13 107.6 4.9 65 422-490 19-94 (233)
62 TIGR01288 nodI ATP-binding ABC 98.6 3.6E-08 7.9E-13 112.1 5.4 65 422-490 18-89 (303)
63 TIGR03265 PhnT2 putative 2-ami 98.6 3.5E-08 7.5E-13 114.8 5.2 66 422-491 18-89 (353)
64 cd03218 ABC_YhbG The ABC trans 98.6 4.3E-08 9.3E-13 106.5 5.7 66 422-491 14-88 (232)
65 PRK13637 cbiO cobalt transport 98.6 3.5E-08 7.5E-13 111.5 5.1 62 422-487 21-92 (287)
66 PRK11153 metN DL-methionine tr 98.6 3.5E-08 7.6E-13 114.3 5.2 66 421-490 18-94 (343)
67 cd03268 ABC_BcrA_bacitracin_re 98.6 3.5E-08 7.7E-13 105.6 4.8 65 421-489 13-83 (208)
68 TIGR03608 L_ocin_972_ABC putat 98.6 2.7E-08 5.9E-13 106.1 3.8 65 422-490 12-88 (206)
69 PRK11248 tauB taurine transpor 98.6 4.3E-08 9.2E-13 108.9 5.4 65 422-490 15-82 (255)
70 cd03254 ABCC_Glucan_exporter_l 98.6 4E-08 8.7E-13 106.6 5.1 65 422-490 17-89 (229)
71 PRK13652 cbiO cobalt transport 98.6 4E-08 8.6E-13 110.3 5.2 62 422-487 18-87 (277)
72 PRK09452 potA putrescine/sperm 98.6 3.5E-08 7.6E-13 115.6 4.9 66 422-491 28-99 (375)
73 PRK13643 cbiO cobalt transport 98.6 3.9E-08 8.5E-13 111.1 5.1 62 422-487 20-93 (288)
74 PRK14247 phosphate ABC transpo 98.6 4.6E-08 9.9E-13 107.7 5.5 65 422-488 17-92 (250)
75 PRK13638 cbiO cobalt transport 98.6 4.2E-08 9.1E-13 109.6 5.2 63 421-487 14-86 (271)
76 PRK14250 phosphate ABC transpo 98.6 4.4E-08 9.5E-13 107.6 5.3 65 422-490 17-89 (241)
77 cd03223 ABCD_peroxisomal_ALDP 98.6 5.2E-08 1.1E-12 101.4 5.5 61 422-489 15-75 (166)
78 PRK10895 lipopolysaccharide AB 98.6 3.7E-08 8E-13 107.9 4.6 65 422-490 17-90 (241)
79 TIGR02769 nickel_nikE nickel i 98.6 4.7E-08 1E-12 108.9 5.5 63 421-487 24-97 (265)
80 PRK13634 cbiO cobalt transport 98.6 4.1E-08 9E-13 111.0 5.0 62 422-487 21-94 (290)
81 PRK10851 sulfate/thiosulfate t 98.6 4.2E-08 9.2E-13 114.1 5.2 66 422-491 16-87 (353)
82 PRK13644 cbiO cobalt transport 98.6 4.5E-08 9.7E-13 109.8 5.3 62 422-487 16-86 (274)
83 PRK15056 manganese/iron transp 98.6 4E-08 8.7E-13 109.9 4.8 64 421-488 20-88 (272)
84 COG1122 CbiO ABC-type cobalt t 98.6 5E-08 1.1E-12 107.5 5.4 72 413-488 9-89 (235)
85 PRK13639 cbiO cobalt transport 98.6 4.3E-08 9.3E-13 109.9 5.0 62 422-487 16-87 (275)
86 TIGR01186 proV glycine betaine 98.6 3.3E-08 7.2E-13 115.3 4.3 66 422-491 7-84 (363)
87 cd03219 ABC_Mj1267_LivG_branch 98.6 4.9E-08 1.1E-12 106.4 5.3 66 422-491 14-88 (236)
88 PRK11607 potG putrescine trans 98.6 4.4E-08 9.6E-13 114.8 5.2 66 422-491 33-104 (377)
89 PRK13632 cbiO cobalt transport 98.6 5.5E-08 1.2E-12 108.8 5.8 63 421-487 22-92 (271)
90 PRK10247 putative ABC transpor 98.6 3.9E-08 8.5E-13 106.9 4.4 66 421-490 20-93 (225)
91 PRK11000 maltose/maltodextrin 98.6 4.6E-08 1E-12 114.4 5.2 66 422-491 17-88 (369)
92 PRK13536 nodulation factor exp 98.6 4.7E-08 1E-12 113.2 5.2 66 421-490 54-126 (340)
93 cd03266 ABC_NatA_sodium_export 98.6 5.4E-08 1.2E-12 104.8 5.3 66 422-491 19-91 (218)
94 PRK14267 phosphate ABC transpo 98.6 6.1E-08 1.3E-12 106.9 5.8 67 422-490 18-97 (253)
95 TIGR03258 PhnT 2-aminoethylpho 98.6 4.7E-08 1E-12 114.0 5.1 68 422-491 19-92 (362)
96 TIGR03410 urea_trans_UrtE urea 98.6 5.7E-08 1.2E-12 105.6 5.4 65 422-490 14-87 (230)
97 PRK10584 putative ABC transpor 98.6 5.2E-08 1.1E-12 105.8 5.1 64 423-490 25-100 (228)
98 PRK13641 cbiO cobalt transport 98.6 5.2E-08 1.1E-12 110.0 5.2 62 422-487 21-94 (287)
99 cd03250 ABCC_MRP_domain1 Domai 98.6 7.5E-08 1.6E-12 102.9 6.2 60 422-490 19-78 (204)
100 COG4167 SapF ABC-type antimicr 98.6 4.4E-08 9.6E-13 102.5 4.2 64 422-489 27-98 (267)
101 cd03233 ABC_PDR_domain1 The pl 98.6 4.3E-08 9.3E-13 105.0 4.2 68 421-490 20-95 (202)
102 PRK14271 phosphate ABC transpo 98.6 5.7E-08 1.2E-12 109.1 5.4 78 410-490 24-113 (276)
103 cd03260 ABC_PstB_phosphate_tra 98.6 5E-08 1.1E-12 105.8 4.8 65 422-490 14-93 (227)
104 cd03301 ABC_MalK_N The N-termi 98.6 5.7E-08 1.2E-12 104.2 5.2 65 422-490 14-84 (213)
105 cd03295 ABC_OpuCA_Osmoprotecti 98.6 5.8E-08 1.3E-12 106.5 5.3 65 422-490 15-87 (242)
106 TIGR03005 ectoine_ehuA ectoine 98.6 5.8E-08 1.3E-12 107.2 5.2 65 422-490 14-99 (252)
107 cd03253 ABCC_ATM1_transporter 98.5 5.5E-08 1.2E-12 106.0 4.9 65 422-490 15-87 (236)
108 PRK14237 phosphate transporter 98.5 6E-08 1.3E-12 108.2 5.3 68 421-490 33-113 (267)
109 cd03247 ABCC_cytochrome_bd The 98.5 5.9E-08 1.3E-12 101.7 4.9 65 422-490 16-87 (178)
110 PRK13651 cobalt transporter AT 98.5 5.7E-08 1.2E-12 110.9 5.1 47 422-472 21-67 (305)
111 PRK14273 phosphate ABC transpo 98.5 7E-08 1.5E-12 106.6 5.6 67 422-490 21-100 (254)
112 PRK14262 phosphate ABC transpo 98.5 6.6E-08 1.4E-12 106.5 5.4 67 422-490 17-96 (250)
113 PRK13636 cbiO cobalt transport 98.5 6E-08 1.3E-12 109.3 5.1 63 421-487 19-91 (283)
114 PRK13635 cbiO cobalt transport 98.5 6.2E-08 1.4E-12 109.0 5.2 62 422-487 21-90 (279)
115 cd03252 ABCC_Hemolysin The ABC 98.5 6.2E-08 1.3E-12 105.8 5.1 64 422-489 16-87 (237)
116 PRK11264 putative amino-acid A 98.5 6.4E-08 1.4E-12 106.5 5.2 64 422-489 17-96 (250)
117 PRK11124 artP arginine transpo 98.5 6.6E-08 1.4E-12 106.0 5.2 65 422-490 16-94 (242)
118 cd03228 ABCC_MRP_Like The MRP 98.5 7E-08 1.5E-12 100.6 5.1 64 422-489 16-87 (171)
119 PRK10253 iron-enterobactin tra 98.5 6.6E-08 1.4E-12 107.7 5.2 65 422-490 21-93 (265)
120 PRK13649 cbiO cobalt transport 98.5 6.2E-08 1.4E-12 108.7 5.1 62 422-487 21-94 (280)
121 PRK11247 ssuB aliphatic sulfon 98.5 7.1E-08 1.5E-12 107.5 5.4 65 422-490 26-93 (257)
122 PRK13540 cytochrome c biogenes 98.5 7.3E-08 1.6E-12 102.8 5.3 64 422-489 15-85 (200)
123 cd03230 ABC_DR_subfamily_A Thi 98.5 5.8E-08 1.3E-12 101.4 4.3 65 422-490 14-85 (173)
124 PRK14240 phosphate transporter 98.5 8E-08 1.7E-12 105.8 5.6 67 422-490 17-96 (250)
125 cd03246 ABCC_Protease_Secretio 98.5 7.5E-08 1.6E-12 100.6 5.1 64 422-489 16-87 (173)
126 cd03251 ABCC_MsbA MsbA is an e 98.5 6.6E-08 1.4E-12 105.2 4.9 65 422-490 16-88 (234)
127 TIGR03864 PQQ_ABC_ATP ABC tran 98.5 6.5E-08 1.4E-12 105.8 4.8 63 422-488 15-84 (236)
128 PRK13648 cbiO cobalt transport 98.5 7.6E-08 1.6E-12 107.5 5.4 61 423-487 24-92 (269)
129 PRK09493 glnQ glutamine ABC tr 98.5 8.2E-08 1.8E-12 105.1 5.5 65 422-490 15-89 (240)
130 cd03245 ABCC_bacteriocin_expor 98.5 8.1E-08 1.7E-12 103.6 5.3 65 422-490 18-90 (220)
131 TIGR03522 GldA_ABC_ATP gliding 98.5 5.8E-08 1.2E-12 110.4 4.4 66 421-490 15-87 (301)
132 PRK15112 antimicrobial peptide 98.5 6.3E-08 1.4E-12 108.1 4.6 62 422-487 27-96 (267)
133 COG0410 LivF ABC-type branched 98.5 7E-08 1.5E-12 104.7 4.7 68 421-492 16-92 (237)
134 cd03249 ABC_MTABC3_MDL1_MDL2 M 98.5 7.2E-08 1.6E-12 105.3 4.9 63 422-488 17-87 (238)
135 PRK13650 cbiO cobalt transport 98.5 7.5E-08 1.6E-12 108.3 5.2 62 422-487 21-90 (279)
136 COG4152 ABC-type uncharacteriz 98.5 3.5E-08 7.6E-13 107.4 2.4 61 420-484 14-78 (300)
137 PRK14269 phosphate ABC transpo 98.5 7.8E-08 1.7E-12 105.9 5.2 67 422-490 16-91 (246)
138 COG4559 ABC-type hemin transpo 98.5 6.9E-08 1.5E-12 103.4 4.5 67 420-488 13-85 (259)
139 PRK11022 dppD dipeptide transp 98.5 7.2E-08 1.6E-12 111.0 5.0 64 422-487 21-98 (326)
140 PRK10575 iron-hydroxamate tran 98.5 7.1E-08 1.5E-12 107.5 4.8 64 422-489 25-96 (265)
141 COG4555 NatA ABC-type Na+ tran 98.5 4.1E-08 8.9E-13 104.4 2.7 69 412-484 6-81 (245)
142 PRK14241 phosphate transporter 98.5 7.6E-08 1.6E-12 106.7 4.9 67 422-490 18-97 (258)
143 cd03264 ABC_drug_resistance_li 98.5 8E-08 1.7E-12 103.1 4.8 64 422-490 14-84 (211)
144 cd03369 ABCC_NFT1 Domain 2 of 98.5 9.4E-08 2E-12 102.4 5.3 65 422-490 22-94 (207)
145 PRK14242 phosphate transporter 98.5 9.5E-08 2.1E-12 105.4 5.4 67 422-490 20-99 (253)
146 TIGR01978 sufC FeS assembly AT 98.5 1E-07 2.2E-12 104.2 5.6 67 422-490 14-89 (243)
147 PRK15093 antimicrobial peptide 98.5 9.1E-08 2E-12 110.3 5.4 65 422-488 21-99 (330)
148 PRK11701 phnK phosphonate C-P 98.5 8.8E-08 1.9E-12 106.2 5.1 62 422-487 20-98 (258)
149 TIGR00972 3a0107s01c2 phosphat 98.5 9.2E-08 2E-12 105.2 5.2 67 422-490 15-94 (247)
150 TIGR01189 ccmA heme ABC export 98.5 7.1E-08 1.5E-12 102.7 4.2 64 422-489 14-84 (198)
151 cd03290 ABCC_SUR1_N The SUR do 98.5 9.5E-08 2.1E-12 103.1 5.2 65 421-489 14-90 (218)
152 PRK13633 cobalt transporter AT 98.5 8.9E-08 1.9E-12 107.7 5.1 63 421-487 23-94 (280)
153 cd03214 ABC_Iron-Siderophores_ 98.5 6E-08 1.3E-12 102.0 3.5 60 422-485 13-80 (180)
154 PRK10744 pstB phosphate transp 98.5 9.7E-08 2.1E-12 106.0 5.3 67 422-490 27-106 (260)
155 PRK14270 phosphate ABC transpo 98.5 1.1E-07 2.3E-12 105.0 5.5 67 422-490 18-97 (251)
156 cd03294 ABC_Pro_Gly_Bertaine T 98.5 7.9E-08 1.7E-12 107.5 4.6 65 422-490 38-114 (269)
157 PRK14272 phosphate ABC transpo 98.5 1.2E-07 2.5E-12 104.5 5.8 67 422-490 18-97 (252)
158 PRK14253 phosphate ABC transpo 98.5 9.1E-08 2E-12 105.3 4.9 68 421-490 16-95 (249)
159 PRK13538 cytochrome c biogenes 98.5 1E-07 2.3E-12 102.0 5.3 63 422-488 15-84 (204)
160 COG2274 SunT ABC-type bacterio 98.5 9.1E-08 2E-12 119.8 5.5 87 409-499 473-568 (709)
161 cd03232 ABC_PDR_domain2 The pl 98.5 8.7E-08 1.9E-12 101.8 4.6 66 422-489 21-90 (192)
162 PRK13645 cbiO cobalt transport 98.5 9.9E-08 2.1E-12 107.7 5.3 62 422-487 25-99 (289)
163 cd03215 ABC_Carb_Monos_II This 98.5 7.3E-08 1.6E-12 101.5 3.9 61 423-487 15-84 (182)
164 PRK10418 nikD nickel transport 98.5 1E-07 2.3E-12 105.4 5.3 64 422-487 17-88 (254)
165 PRK14235 phosphate transporter 98.5 1E-07 2.2E-12 106.5 5.2 67 422-490 33-112 (267)
166 cd03213 ABCG_EPDR ABCG transpo 98.5 1.1E-07 2.3E-12 101.4 5.2 66 421-490 22-94 (194)
167 TIGR03797 NHPM_micro_ABC2 NHPM 98.5 1.1E-07 2.4E-12 119.4 6.1 87 409-499 453-548 (686)
168 PRK13539 cytochrome c biogenes 98.5 9E-08 2E-12 102.8 4.6 61 422-486 16-81 (207)
169 PRK10619 histidine/lysine/argi 98.5 1E-07 2.2E-12 105.6 5.1 65 422-490 19-104 (257)
170 cd03298 ABC_ThiQ_thiamine_tran 98.5 7.9E-08 1.7E-12 103.1 4.1 61 428-490 16-82 (211)
171 cd03248 ABCC_TAP TAP, the Tran 98.5 1.1E-07 2.4E-12 103.1 5.2 65 422-490 28-100 (226)
172 PRK09984 phosphonate/organopho 98.5 1.1E-07 2.4E-12 105.7 5.3 68 421-490 17-98 (262)
173 PRK14256 phosphate ABC transpo 98.5 1.3E-07 2.7E-12 104.5 5.7 68 422-491 18-98 (252)
174 PRK13548 hmuV hemin importer A 98.5 1.1E-07 2.4E-12 105.6 5.3 64 422-489 16-87 (258)
175 TIGR03411 urea_trans_UrtD urea 98.5 1.2E-07 2.5E-12 104.0 5.3 66 422-491 16-90 (242)
176 PRK10419 nikE nickel transport 98.5 1.1E-07 2.3E-12 106.4 5.1 62 422-487 26-98 (268)
177 cd03216 ABC_Carb_Monos_I This 98.5 1.2E-07 2.5E-12 98.4 5.1 49 422-474 14-62 (163)
178 cd03244 ABCC_MRP_domain2 Domai 98.5 1.2E-07 2.6E-12 102.4 5.2 65 422-490 18-90 (221)
179 PRK11308 dppF dipeptide transp 98.5 8E-08 1.7E-12 110.7 4.2 62 422-487 29-101 (327)
180 PRK14274 phosphate ABC transpo 98.5 1.1E-07 2.5E-12 105.3 5.1 67 422-490 26-105 (259)
181 PRK14259 phosphate ABC transpo 98.5 1.1E-07 2.3E-12 106.4 4.9 67 422-490 27-106 (269)
182 KOG0056|consensus 98.5 8.4E-08 1.8E-12 111.8 4.1 81 407-491 537-625 (790)
183 PRK14268 phosphate ABC transpo 98.5 1.1E-07 2.5E-12 105.4 5.0 66 422-489 26-104 (258)
184 TIGR02982 heterocyst_DevA ABC 98.5 1.1E-07 2.4E-12 102.8 4.8 65 422-490 19-94 (220)
185 PRK14239 phosphate transporter 98.5 1.3E-07 2.8E-12 104.3 5.3 67 422-490 19-98 (252)
186 smart00785 AARP2CN AARP2CN (NU 98.5 4.2E-08 9.1E-13 91.5 1.3 32 1045-1076 1-32 (83)
187 TIGR03873 F420-0_ABC_ATP propo 98.5 1.1E-07 2.3E-12 105.4 4.7 64 422-489 15-86 (256)
188 TIGR02323 CP_lyasePhnK phospho 98.5 1.3E-07 2.8E-12 104.3 5.4 48 422-473 17-64 (253)
189 TIGR02770 nickel_nikD nickel i 98.5 9.8E-08 2.1E-12 104.0 4.3 61 425-487 3-71 (230)
190 TIGR03740 galliderm_ABC gallid 98.5 1.2E-07 2.6E-12 102.7 4.9 63 422-488 14-80 (223)
191 PRK13640 cbiO cobalt transport 98.5 1.2E-07 2.7E-12 106.7 5.2 64 422-487 21-93 (282)
192 PRK11231 fecE iron-dicitrate t 98.5 1.2E-07 2.6E-12 105.0 4.9 65 422-490 16-88 (255)
193 PRK09544 znuC high-affinity zi 98.5 1.1E-07 2.5E-12 105.4 4.7 60 422-488 18-77 (251)
194 COG4525 TauB ABC-type taurine 98.5 1.2E-07 2.6E-12 100.4 4.6 64 423-490 20-89 (259)
195 PRK11174 cysteine/glutathione 98.5 1.3E-07 2.8E-12 116.5 5.7 75 421-500 363-445 (588)
196 PRK15079 oligopeptide ABC tran 98.5 9.4E-08 2E-12 110.3 4.1 62 422-487 35-107 (331)
197 cd03231 ABC_CcmA_heme_exporter 98.5 1.1E-07 2.3E-12 101.8 4.2 64 422-489 14-84 (201)
198 PRK14255 phosphate ABC transpo 98.5 1.5E-07 3.3E-12 103.8 5.5 66 422-489 19-97 (252)
199 PRK14251 phosphate ABC transpo 98.5 1.4E-07 3E-12 104.0 5.1 67 422-490 18-97 (251)
200 PRK13631 cbiO cobalt transport 98.5 1.5E-07 3.2E-12 108.2 5.5 62 422-487 40-125 (320)
201 PRK11614 livF leucine/isoleuci 98.5 1.2E-07 2.6E-12 103.7 4.5 66 421-490 18-92 (237)
202 PRK11300 livG leucine/isoleuci 98.5 1.3E-07 2.8E-12 104.4 4.9 66 422-491 19-93 (255)
203 PRK10070 glycine betaine trans 98.5 1E-07 2.2E-12 112.6 4.2 65 423-491 43-119 (400)
204 PRK13549 xylose transporter AT 98.5 1.3E-07 2.8E-12 114.8 5.2 67 422-490 19-94 (506)
205 TIGR01184 ntrCD nitrate transp 98.5 1.3E-07 2.8E-12 103.3 4.7 61 426-490 3-66 (230)
206 PRK14243 phosphate transporter 98.5 1.4E-07 2.9E-12 105.3 4.9 67 422-490 24-103 (264)
207 COG4181 Predicted ABC-type tra 98.5 1.3E-07 2.7E-12 98.4 4.2 67 421-491 23-101 (228)
208 COG1132 MdlB ABC-type multidru 98.5 1.6E-07 3.4E-12 115.5 5.8 89 408-500 329-425 (567)
209 cd03229 ABC_Class3 This class 98.5 1.2E-07 2.5E-12 99.6 4.0 64 422-489 14-87 (178)
210 PRK14261 phosphate ABC transpo 98.4 1.8E-07 3.8E-12 103.4 5.6 67 422-490 20-99 (253)
211 TIGR01193 bacteriocin_ABC ABC- 98.4 1.3E-07 2.8E-12 119.2 5.1 87 409-499 475-569 (708)
212 PRK14245 phosphate ABC transpo 98.4 1.5E-07 3.2E-12 103.8 5.0 67 422-490 17-96 (250)
213 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.4 1.5E-07 3.2E-12 95.9 4.6 57 422-485 14-70 (144)
214 PRK14238 phosphate transporter 98.4 1.4E-07 3.1E-12 105.6 4.8 67 422-490 38-117 (271)
215 PRK09473 oppD oligopeptide tra 98.4 1.3E-07 2.9E-12 109.0 4.8 64 422-487 30-106 (330)
216 PRK10771 thiQ thiamine transpo 98.4 1.6E-07 3.4E-12 102.5 5.0 61 428-490 17-83 (232)
217 TIGR03796 NHPM_micro_ABC1 NHPM 98.4 1.4E-07 3.1E-12 118.8 5.4 87 409-499 479-574 (710)
218 COG4618 ArpD ABC-type protease 98.4 1.6E-07 3.4E-12 110.8 5.3 81 420-502 348-434 (580)
219 PRK13642 cbiO cobalt transport 98.4 1.5E-07 3.2E-12 105.7 4.9 62 422-487 21-90 (277)
220 cd03267 ABC_NatA_like Similar 98.4 1.2E-07 2.6E-12 104.0 4.0 60 422-485 35-101 (236)
221 PRK14244 phosphate ABC transpo 98.4 1.5E-07 3.3E-12 103.8 4.8 67 422-490 19-98 (251)
222 PRK14260 phosphate ABC transpo 98.4 1.7E-07 3.7E-12 104.1 5.2 67 422-490 21-100 (259)
223 TIGR02324 CP_lyasePhnL phospho 98.4 1.8E-07 4E-12 101.2 5.2 64 422-489 22-101 (224)
224 PRK09536 btuD corrinoid ABC tr 98.4 1.3E-07 2.7E-12 111.9 4.2 64 421-488 16-87 (402)
225 cd03288 ABCC_SUR2 The SUR doma 98.4 1.6E-07 3.5E-12 104.2 4.8 65 422-490 35-107 (257)
226 PRK13547 hmuV hemin importer A 98.4 1.6E-07 3.4E-12 105.5 4.7 65 422-488 15-93 (272)
227 PRK13543 cytochrome c biogenes 98.4 1.5E-07 3.2E-12 101.7 4.1 64 422-489 25-93 (214)
228 TIGR01277 thiQ thiamine ABC tr 98.4 1.9E-07 4.2E-12 100.5 5.0 63 425-491 15-83 (213)
229 PRK10790 putative multidrug tr 98.4 1.9E-07 4.1E-12 115.3 5.7 86 410-499 343-436 (592)
230 PRK14248 phosphate ABC transpo 98.4 2E-07 4.3E-12 104.0 5.3 68 421-490 34-114 (268)
231 PRK14263 phosphate ABC transpo 98.4 1.9E-07 4.2E-12 104.0 5.0 67 422-490 22-101 (261)
232 TIGR02857 CydD thiol reductant 98.4 2.3E-07 4.9E-12 113.0 6.0 86 410-499 323-417 (529)
233 PRK13541 cytochrome c biogenes 98.4 1.8E-07 4E-12 99.4 4.6 56 427-486 19-78 (195)
234 PRK14265 phosphate ABC transpo 98.4 2.1E-07 4.5E-12 104.5 5.2 67 422-490 34-113 (274)
235 cd03217 ABC_FeS_Assembly ABC-t 98.4 2.6E-07 5.7E-12 98.8 5.7 66 422-489 14-88 (200)
236 COG4586 ABC-type uncharacteriz 98.4 1.2E-07 2.6E-12 104.8 3.1 42 425-466 39-80 (325)
237 PRK09580 sufC cysteine desulfu 98.4 2.5E-07 5.4E-12 101.6 5.6 65 422-488 15-88 (248)
238 COG4988 CydD ABC-type transpor 98.4 2.5E-07 5.4E-12 111.2 5.9 85 412-500 325-417 (559)
239 PRK14254 phosphate ABC transpo 98.4 2.2E-07 4.7E-12 105.0 5.2 67 422-490 53-132 (285)
240 cd03222 ABC_RNaseL_inhibitor T 98.4 1.7E-07 3.8E-12 99.1 4.1 50 431-486 20-69 (177)
241 PRK11160 cysteine/glutathione 98.4 2.2E-07 4.9E-12 114.4 5.7 86 410-499 341-435 (574)
242 PRK11176 lipid transporter ATP 98.4 2.3E-07 5E-12 114.2 5.7 86 410-499 344-438 (582)
243 cd03234 ABCG_White The White s 98.4 2.2E-07 4.7E-12 101.0 4.9 67 421-491 20-94 (226)
244 PF00005 ABC_tran: ABC transpo 98.4 8.2E-08 1.8E-12 95.5 1.4 58 426-487 3-68 (137)
245 TIGR02633 xylG D-xylose ABC tr 98.4 2.1E-07 4.6E-12 112.6 5.2 67 422-490 15-90 (500)
246 TIGR03415 ABC_choXWV_ATP choli 98.4 1.8E-07 3.9E-12 109.9 4.3 65 423-491 39-119 (382)
247 PRK14249 phosphate ABC transpo 98.4 2.9E-07 6.2E-12 101.6 5.7 67 422-490 18-97 (251)
248 PRK13657 cyclic beta-1,2-gluca 98.4 2.6E-07 5.6E-12 114.1 5.8 86 410-499 337-430 (588)
249 TIGR02142 modC_ABC molybdenum 98.4 2.5E-07 5.4E-12 107.7 5.1 62 426-491 15-88 (354)
250 cd03300 ABC_PotA_N PotA is an 98.4 2.9E-07 6.4E-12 100.5 5.4 65 422-490 14-84 (232)
251 PRK10762 D-ribose transporter 98.4 2.2E-07 4.8E-12 112.6 4.9 65 422-490 18-91 (501)
252 PRK11819 putative ABC transpor 98.4 2.8E-07 6E-12 113.2 5.8 63 421-490 20-82 (556)
253 cd03299 ABC_ModC_like Archeal 98.4 3E-07 6.6E-12 100.6 5.5 64 423-490 14-83 (235)
254 TIGR03375 type_I_sec_LssB type 98.4 2.6E-07 5.6E-12 116.2 5.4 87 409-499 465-560 (694)
255 TIGR03771 anch_rpt_ABC anchore 98.4 2.8E-07 6.1E-12 100.2 5.0 56 432-489 2-60 (223)
256 PRK14252 phosphate ABC transpo 98.4 2.8E-07 6E-12 102.7 5.1 67 422-490 30-111 (265)
257 COG1123 ATPase components of v 98.4 2.2E-07 4.8E-12 111.8 4.5 64 421-488 304-377 (539)
258 COG1134 TagH ABC-type polysacc 98.4 1.8E-07 3.9E-12 102.3 3.4 50 420-473 39-88 (249)
259 PRK11144 modC molybdate transp 98.4 2.1E-07 4.5E-12 108.3 4.0 62 428-491 16-89 (352)
260 PRK15177 Vi polysaccharide exp 98.4 2.2E-07 4.7E-12 100.6 3.9 42 424-469 3-44 (213)
261 PRK10938 putative molybdenum t 98.4 2.5E-07 5.4E-12 111.7 4.9 62 422-487 17-86 (490)
262 PRK14275 phosphate ABC transpo 98.4 3.1E-07 6.6E-12 103.8 5.0 67 422-490 53-132 (286)
263 KOG0057|consensus 98.4 2.9E-07 6.3E-12 109.5 4.9 81 408-493 352-440 (591)
264 CHL00131 ycf16 sulfate ABC tra 98.4 3.6E-07 7.7E-12 100.7 5.2 52 422-475 21-72 (252)
265 PRK09700 D-allose transporter 98.4 2.8E-07 6E-12 112.0 4.7 60 423-486 278-346 (510)
266 TIGR00958 3a01208 Conjugate Tr 98.4 4.1E-07 8.9E-12 114.9 6.4 86 410-499 481-576 (711)
267 KOG0058|consensus 98.4 4.2E-07 9.1E-12 111.3 6.0 92 407-500 465-564 (716)
268 cd03291 ABCC_CFTR1 The CFTR su 98.4 2.7E-07 5.9E-12 104.3 4.1 60 421-489 50-109 (282)
269 PRK03695 vitamin B12-transport 98.3 2.4E-07 5.3E-12 102.3 3.5 61 423-488 11-79 (248)
270 COG3845 ABC-type uncharacteriz 98.3 3.9E-07 8.4E-12 107.5 5.3 69 420-492 16-93 (501)
271 PRK14266 phosphate ABC transpo 98.3 4E-07 8.7E-12 100.3 5.1 68 422-491 17-97 (250)
272 PRK15134 microcin C ABC transp 98.3 3.7E-07 8.1E-12 111.4 5.2 65 422-488 23-102 (529)
273 PRK09700 D-allose transporter 98.3 3.4E-07 7.4E-12 111.1 4.9 65 422-490 19-92 (510)
274 PRK14257 phosphate ABC transpo 98.3 5.7E-07 1.2E-11 103.8 6.3 69 421-491 95-176 (329)
275 cd03297 ABC_ModC_molybdenum_tr 98.3 3.8E-07 8.3E-12 98.2 4.6 60 428-490 16-87 (214)
276 PRK10261 glutathione transport 98.3 3.1E-07 6.8E-12 114.3 4.4 62 422-487 338-410 (623)
277 PRK14236 phosphate transporter 98.3 4.6E-07 9.9E-12 101.5 5.2 67 422-490 39-118 (272)
278 TIGR03719 ABC_ABC_ChvD ATP-bin 98.3 4.8E-07 1.1E-11 111.0 5.9 62 422-490 19-80 (552)
279 PRK15064 ABC transporter ATP-b 98.3 4.8E-07 1E-11 110.4 5.8 62 422-490 15-76 (530)
280 PRK14264 phosphate ABC transpo 98.3 4.6E-07 9.9E-12 103.3 5.0 67 422-490 59-138 (305)
281 PRK15439 autoinducer 2 ABC tra 98.3 4.7E-07 1E-11 110.1 5.4 66 421-490 24-98 (510)
282 TIGR02204 MsbA_rel ABC transpo 98.3 5.5E-07 1.2E-11 110.6 6.0 75 421-499 353-435 (576)
283 cd03289 ABCC_CFTR2 The CFTR su 98.3 5.5E-07 1.2E-11 101.5 5.5 65 422-491 18-90 (275)
284 PRK10522 multidrug transporter 98.3 4E-07 8.7E-12 111.5 4.7 78 410-491 325-410 (547)
285 TIGR00968 3a0106s01 sulfate AB 98.3 5.3E-07 1.2E-11 98.8 5.1 65 422-490 14-84 (237)
286 PRK10982 galactose/methyl gala 98.3 3.3E-07 7.2E-12 110.7 3.8 65 422-490 12-85 (491)
287 TIGR02203 MsbA_lipidA lipid A 98.3 5.6E-07 1.2E-11 110.4 5.7 86 410-499 333-427 (571)
288 PRK11288 araG L-arabinose tran 98.3 4.8E-07 1E-11 109.7 5.0 65 422-490 18-91 (501)
289 COG4133 CcmA ABC-type transpor 98.3 4.2E-07 9.2E-12 96.0 3.8 48 425-476 19-66 (209)
290 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.3 3.7E-07 8E-12 99.4 3.4 51 421-475 35-85 (224)
291 COG4598 HisP ABC-type histidin 98.3 3.6E-07 7.9E-12 95.6 3.1 64 422-489 20-104 (256)
292 PRK10261 glutathione transport 98.3 5.5E-07 1.2E-11 112.1 5.2 42 422-465 30-71 (623)
293 PRK14246 phosphate ABC transpo 98.3 5.8E-07 1.3E-11 100.0 4.8 68 421-490 23-102 (257)
294 cd03237 ABC_RNaseL_inhibitor_d 98.3 6.3E-07 1.4E-11 99.3 5.0 50 433-488 22-71 (246)
295 PRK14258 phosphate ABC transpo 98.3 7.6E-07 1.6E-11 99.1 5.5 67 422-490 21-100 (261)
296 PRK10789 putative multidrug tr 98.3 7.9E-07 1.7E-11 109.5 6.1 73 422-498 329-409 (569)
297 COG4175 ProV ABC-type proline/ 98.3 4.5E-07 9.8E-12 102.0 3.5 65 424-490 42-118 (386)
298 COG1119 ModF ABC-type molybden 98.3 6.8E-07 1.5E-11 97.9 4.7 42 420-463 43-84 (257)
299 TIGR01192 chvA glucan exporter 98.3 8.5E-07 1.8E-11 109.6 6.1 85 411-499 338-430 (585)
300 TIGR01842 type_I_sec_PrtD type 98.3 8.8E-07 1.9E-11 108.5 6.2 86 410-499 319-413 (544)
301 PRK13546 teichoic acids export 98.3 4.9E-07 1.1E-11 101.2 3.4 48 422-473 38-85 (264)
302 cd00267 ABC_ATPase ABC (ATP-bi 98.3 6.5E-07 1.4E-11 91.8 4.0 60 422-485 13-80 (157)
303 TIGR01846 type_I_sec_HlyB type 98.3 8.1E-07 1.7E-11 111.9 5.6 87 409-499 457-552 (694)
304 COG4604 CeuD ABC-type enteroch 98.3 4E-07 8.7E-12 96.7 2.4 64 422-487 15-84 (252)
305 TIGR02633 xylG D-xylose ABC tr 98.2 5.8E-07 1.2E-11 108.9 3.9 63 422-487 274-345 (500)
306 KOG1980|consensus 98.2 1.5E-06 3.2E-11 103.9 6.8 85 1091-1175 559-643 (754)
307 PRK10762 D-ribose transporter 98.2 6.3E-07 1.4E-11 108.7 3.9 61 423-487 267-336 (501)
308 PRK13549 xylose transporter AT 98.2 6.8E-07 1.5E-11 108.5 4.1 63 422-487 276-347 (506)
309 cd03236 ABC_RNaseL_inhibitor_d 98.2 1E-06 2.2E-11 98.3 5.1 40 423-465 16-55 (255)
310 COG4987 CydC ABC-type transpor 98.2 8.2E-07 1.8E-11 105.7 4.5 87 411-499 340-433 (573)
311 PRK15064 ABC transporter ATP-b 98.2 9.2E-07 2E-11 108.0 5.0 59 422-487 333-391 (530)
312 TIGR03269 met_CoM_red_A2 methy 98.2 8.4E-07 1.8E-11 108.0 4.7 65 422-490 298-377 (520)
313 PRK15134 microcin C ABC transp 98.2 8.3E-07 1.8E-11 108.4 4.4 61 422-487 300-371 (529)
314 PRK11288 araG L-arabinose tran 98.2 7.6E-07 1.6E-11 108.0 3.7 60 423-486 268-336 (501)
315 COG0396 sufC Cysteine desulfur 98.2 1.2E-06 2.6E-11 95.2 4.8 65 421-487 17-90 (251)
316 COG4608 AppF ABC-type oligopep 98.2 7.9E-07 1.7E-11 98.9 3.4 52 421-476 26-77 (268)
317 PRK10982 galactose/methyl gala 98.2 9.4E-07 2E-11 106.9 4.2 51 422-476 262-312 (491)
318 PF08142 AARP2CN: AARP2CN (NUC 98.2 5E-07 1.1E-11 84.8 1.3 32 1045-1076 1-32 (85)
319 PRK15439 autoinducer 2 ABC tra 98.2 8.3E-07 1.8E-11 108.0 3.6 60 423-486 278-346 (510)
320 PRK10938 putative molybdenum t 98.2 1E-06 2.3E-11 106.4 4.2 63 422-487 274-345 (490)
321 KOG0055|consensus 98.2 1.4E-06 3E-11 112.2 5.5 88 409-500 352-449 (1228)
322 COG4615 PvdE ABC-type sideroph 98.2 7.9E-07 1.7E-11 102.2 2.9 82 405-490 320-409 (546)
323 TIGR01194 cyc_pep_trnsptr cycl 98.2 1.2E-06 2.5E-11 107.8 4.4 65 422-490 356-428 (555)
324 PLN03073 ABC transporter F fam 98.2 1.5E-06 3.2E-11 109.8 5.2 59 422-487 523-581 (718)
325 COG1129 MglA ABC-type sugar tr 98.2 1.3E-06 2.8E-11 104.7 4.4 75 420-498 20-104 (500)
326 PRK10636 putative ABC transpor 98.2 1.5E-06 3.2E-11 108.6 5.1 59 421-486 325-383 (638)
327 COG4136 ABC-type uncharacteriz 98.2 1.4E-06 2.9E-11 89.2 3.8 66 423-490 17-89 (213)
328 PRK11147 ABC transporter ATPas 98.2 1.5E-06 3.3E-11 108.4 5.0 59 422-487 333-391 (635)
329 TIGR03269 met_CoM_red_A2 methy 98.1 1.4E-06 3.1E-11 106.0 4.6 46 422-471 14-61 (520)
330 PRK11147 ABC transporter ATPas 98.1 1.4E-06 3.1E-11 108.7 4.5 49 421-473 16-64 (635)
331 PTZ00265 multidrug resistance 98.1 1.8E-06 3.9E-11 116.4 5.7 91 408-500 1166-1318(1466)
332 TIGR00954 3a01203 Peroxysomal 98.1 2.5E-06 5.5E-11 106.9 6.6 65 421-492 465-529 (659)
333 PRK10636 putative ABC transpor 98.1 1.6E-06 3.6E-11 108.2 4.9 49 421-473 14-62 (638)
334 TIGR03719 ABC_ABC_ChvD ATP-bin 98.1 1.4E-06 3E-11 107.1 3.9 59 422-487 336-394 (552)
335 PRK11819 putative ABC transpor 98.1 1.5E-06 3.2E-11 106.9 4.0 59 422-487 338-396 (556)
336 PLN03211 ABC transporter G-25; 98.1 1.3E-06 2.7E-11 109.5 3.3 68 421-490 81-152 (659)
337 COG0444 DppD ABC-type dipeptid 98.1 2.3E-06 5.1E-11 97.1 5.0 65 421-487 18-97 (316)
338 PLN03130 ABC transporter C fam 98.1 2.5E-06 5.4E-11 116.1 5.9 87 408-498 1238-1333(1622)
339 TIGR01257 rim_protein retinal- 98.1 2E-06 4.3E-11 117.4 5.0 66 421-490 1952-2024(2272)
340 COG1101 PhnK ABC-type uncharac 98.1 1.4E-06 3E-11 93.8 2.7 63 421-487 19-89 (263)
341 PTZ00243 ABC transporter; Prov 98.1 2.6E-06 5.6E-11 115.6 5.9 87 408-498 1309-1404(1560)
342 PLN03232 ABC transporter C fam 98.1 2.5E-06 5.5E-11 115.5 5.4 87 408-498 1235-1330(1495)
343 PTZ00265 multidrug resistance 98.1 2.6E-06 5.7E-11 114.8 5.3 85 410-498 385-480 (1466)
344 COG1137 YhbG ABC-type (unclass 98.1 4.3E-07 9.3E-12 96.7 -1.8 69 420-492 16-93 (243)
345 PRK13545 tagH teichoic acids e 98.0 2.9E-06 6.2E-11 102.8 4.3 49 422-474 38-86 (549)
346 COG4148 ModC ABC-type molybdat 98.0 3.1E-06 6.7E-11 94.1 4.2 56 433-490 21-88 (352)
347 COG4161 ArtP ABC-type arginine 98.0 2.6E-06 5.6E-11 88.0 2.9 64 426-489 18-93 (242)
348 cd03238 ABC_UvrA The excision 98.0 2.6E-06 5.7E-11 90.1 3.1 35 421-457 8-42 (176)
349 TIGR00957 MRP_assoc_pro multi 98.0 4.5E-06 9.7E-11 113.3 5.8 87 408-498 1285-1380(1522)
350 PRK13409 putative ATPase RIL; 98.0 4.4E-06 9.6E-11 103.5 5.3 42 422-466 88-129 (590)
351 TIGR01257 rim_protein retinal- 98.0 3.6E-06 7.9E-11 115.0 4.8 66 421-490 943-1015(2272)
352 TIGR03238 dnd_assoc_3 dnd syst 98.0 1.5E-06 3.2E-11 103.5 0.9 74 410-488 7-88 (504)
353 PRK10535 macrolide transporter 98.0 5.9E-06 1.3E-10 103.5 5.5 66 422-491 22-99 (648)
354 PRK13409 putative ATPase RIL; 98.0 4.3E-06 9.3E-11 103.6 4.1 56 424-488 355-410 (590)
355 COG4107 PhnK ABC-type phosphon 98.0 6.2E-06 1.3E-10 86.2 4.3 39 428-466 24-62 (258)
356 COG1123 ATPase components of v 97.9 6.3E-06 1.4E-10 99.6 4.4 64 422-487 23-100 (539)
357 TIGR00955 3a01204 The Eye Pigm 97.9 6.1E-06 1.3E-10 102.8 4.2 69 420-490 37-111 (617)
358 cd03278 ABC_SMC_barmotin Barmo 97.9 7.6E-06 1.7E-10 87.9 4.3 56 433-489 20-87 (197)
359 PF02724 CDC45: CDC45-like pro 97.9 1.5E-06 3.3E-11 107.8 -1.4 51 15-65 12-65 (622)
360 COG4138 BtuD ABC-type cobalami 97.9 8.9E-06 1.9E-10 85.2 4.1 46 427-475 16-61 (248)
361 KOG0055|consensus 97.9 1.2E-05 2.6E-10 103.9 5.8 90 408-499 988-1085(1228)
362 PLN03140 ABC transporter G fam 97.9 8.2E-06 1.8E-10 109.9 4.0 68 420-489 177-250 (1470)
363 TIGR01271 CFTR_protein cystic 97.8 1.4E-05 3E-10 108.4 5.8 84 410-498 1220-1312(1490)
364 cd00820 PEPCK_HprK Phosphoenol 97.8 6.6E-06 1.4E-10 80.4 2.0 33 423-457 4-36 (107)
365 COG0488 Uup ATPase components 97.8 1.6E-05 3.4E-10 97.1 5.3 64 420-490 15-78 (530)
366 TIGR01271 CFTR_protein cystic 97.8 1.4E-05 3E-10 108.4 5.2 68 422-498 440-507 (1490)
367 COG4674 Uncharacterized ABC-ty 97.8 4.2E-06 9.1E-11 89.0 0.0 67 421-491 18-94 (249)
368 COG5265 ATM1 ABC-type transpor 97.8 2E-05 4.2E-10 91.9 5.4 85 408-496 263-355 (497)
369 PLN03140 ABC transporter G fam 97.8 1.1E-05 2.5E-10 108.6 3.8 66 422-489 894-964 (1470)
370 COG4778 PhnL ABC-type phosphon 97.8 2.2E-05 4.7E-10 82.1 4.7 43 422-466 25-67 (235)
371 TIGR00956 3a01205 Pleiotropic 97.8 1.3E-05 2.8E-10 108.0 3.7 66 421-488 776-846 (1394)
372 TIGR00957 MRP_assoc_pro multi 97.8 2.5E-05 5.4E-10 106.3 6.1 69 422-499 652-720 (1522)
373 PLN03232 ABC transporter C fam 97.8 2.7E-05 5.8E-10 105.8 6.3 71 422-500 631-701 (1495)
374 TIGR00956 3a01205 Pleiotropic 97.7 1.8E-05 3.9E-10 106.6 3.7 68 420-489 73-149 (1394)
375 PLN03130 ABC transporter C fam 97.7 3.3E-05 7.1E-10 105.5 6.0 71 422-500 631-701 (1622)
376 PLN03073 ABC transporter F fam 97.7 2.2E-05 4.8E-10 99.3 3.9 37 422-460 191-227 (718)
377 COG4172 ABC-type uncharacteriz 97.7 2.4E-05 5.2E-10 90.7 3.8 60 423-487 302-372 (534)
378 TIGR01187 potA spermidine/putr 97.7 2.2E-05 4.8E-10 90.6 2.9 49 441-491 1-55 (325)
379 PTZ00243 ABC transporter; Prov 97.6 3.8E-05 8.3E-10 104.5 5.2 61 422-491 674-734 (1560)
380 COG0488 Uup ATPase components 97.6 3.7E-05 8E-10 93.9 4.2 58 423-487 337-394 (530)
381 cd03270 ABC_UvrA_I The excisio 97.6 4.4E-05 9.6E-10 83.6 4.0 31 421-453 8-38 (226)
382 KOG0061|consensus 97.6 3.6E-05 7.7E-10 95.9 3.4 68 420-489 42-115 (613)
383 KOG0059|consensus 97.4 0.0001 2.3E-09 95.4 3.9 62 423-488 580-650 (885)
384 cd03279 ABC_sbcCD SbcCD and ot 97.4 0.00015 3.4E-09 78.4 4.3 62 425-487 18-85 (213)
385 cd01130 VirB11-like_ATPase Typ 97.3 0.00014 3E-09 77.2 3.7 30 433-462 22-51 (186)
386 cd01882 BMS1 Bms1. Bms1 is an 97.3 0.00011 2.4E-09 80.4 2.8 64 398-461 1-64 (225)
387 TIGR00235 udk uridine kinase. 97.3 0.00012 2.7E-09 78.7 3.1 28 434-461 4-31 (207)
388 PRK10078 ribose 1,5-bisphospho 97.3 0.00017 3.6E-09 76.5 3.8 26 436-461 2-27 (186)
389 COG4172 ABC-type uncharacteriz 97.3 0.0002 4.3E-09 83.3 3.9 64 422-487 24-102 (534)
390 cd03283 ABC_MutS-like MutS-lik 97.3 0.00016 3.5E-09 77.9 3.0 29 433-461 22-50 (199)
391 KOG1832|consensus 97.2 0.00019 4.1E-09 88.5 3.7 11 96-106 1364-1374(1516)
392 COG4178 ABC-type uncharacteriz 97.2 0.0003 6.6E-09 86.4 5.5 62 422-490 407-468 (604)
393 PRK00300 gmk guanylate kinase; 97.2 0.00022 4.8E-09 76.1 3.8 28 434-461 3-30 (205)
394 PRK09825 idnK D-gluconate kina 97.2 0.00023 5E-09 75.3 3.7 28 435-462 2-29 (176)
395 cd03272 ABC_SMC3_euk Eukaryoti 97.2 0.00017 3.7E-09 79.1 2.8 26 436-461 23-48 (243)
396 cd03240 ABC_Rad50 The catalyti 97.2 0.00035 7.5E-09 75.5 4.5 52 435-487 22-80 (204)
397 KOG0054|consensus 97.1 0.0003 6.4E-09 93.1 4.2 83 410-496 1141-1232(1381)
398 KOG0927|consensus 97.1 0.00036 7.9E-09 83.7 3.9 43 425-471 407-449 (614)
399 cd03280 ABC_MutS2 MutS2 homolo 97.1 0.00038 8.2E-09 74.7 3.5 30 428-457 19-49 (200)
400 KOG0066|consensus 97.1 0.00052 1.1E-08 80.0 4.7 54 410-465 589-642 (807)
401 cd03243 ABC_MutS_homologs The 97.0 0.00037 8.1E-09 74.8 3.1 28 433-460 26-53 (202)
402 cd03274 ABC_SMC4_euk Eukaryoti 97.0 0.00046 1E-08 75.1 3.9 23 437-459 26-48 (212)
403 cd03273 ABC_SMC2_euk Eukaryoti 97.0 0.00042 9.1E-09 76.9 3.6 27 436-462 25-51 (251)
404 TIGR03263 guanyl_kin guanylate 97.0 0.00053 1.1E-08 71.6 3.7 26 436-461 1-26 (180)
405 COG2401 ABC-type ATPase fused 97.0 0.00036 7.9E-09 81.3 2.5 37 423-461 398-434 (593)
406 KOG0064|consensus 96.9 0.00059 1.3E-08 81.5 3.6 41 424-466 498-538 (728)
407 TIGR02322 phosphon_PhnN phosph 96.9 0.00062 1.3E-08 71.2 3.4 26 436-461 1-26 (179)
408 PF13555 AAA_29: P-loop contai 96.9 0.00086 1.9E-08 59.6 3.7 27 435-461 22-48 (62)
409 KOG0054|consensus 96.9 0.00068 1.5E-08 89.9 4.4 92 422-522 535-634 (1381)
410 KOG0065|consensus 96.9 0.00048 1E-08 89.8 2.7 64 421-486 804-872 (1391)
411 PRK09270 nucleoside triphospha 96.9 0.00066 1.4E-08 74.4 3.5 32 434-465 31-62 (229)
412 PF04931 DNA_pol_phi: DNA poly 96.9 0.0012 2.6E-08 84.8 6.0 16 336-351 735-750 (784)
413 KOG2355|consensus 96.8 0.0013 2.9E-08 70.8 4.5 63 427-491 31-99 (291)
414 KOG0927|consensus 96.8 0.0012 2.7E-08 79.3 4.6 49 422-470 87-135 (614)
415 KOG0060|consensus 96.7 0.0015 3.2E-08 79.1 5.1 50 423-472 448-497 (659)
416 cd02023 UMPK Uridine monophosp 96.7 0.00097 2.1E-08 71.1 2.5 24 438-461 1-24 (198)
417 COG1245 Predicted ATPase, RNas 96.6 0.0014 3E-08 77.5 3.7 34 433-466 364-397 (591)
418 PRK05480 uridine/cytidine kina 96.6 0.0013 2.9E-08 70.7 3.3 28 434-461 4-31 (209)
419 PRK07196 fliI flagellum-specif 96.6 0.0012 2.6E-08 79.0 3.1 45 415-462 137-181 (434)
420 COG5177 Uncharacterized conser 96.6 0.0014 3.1E-08 77.1 3.5 82 1093-1174 573-656 (769)
421 TIGR02858 spore_III_AA stage I 96.6 0.0015 3.2E-08 73.9 3.6 38 437-476 112-149 (270)
422 TIGR00554 panK_bact pantothena 96.6 0.0014 3E-08 74.8 3.2 28 434-461 60-87 (290)
423 cd03282 ABC_MSH4_euk MutS4 hom 96.6 0.0015 3.2E-08 70.9 3.3 36 423-460 18-53 (204)
424 PRK06002 fliI flagellum-specif 96.6 0.0019 4.2E-08 77.4 4.4 36 427-462 156-191 (450)
425 cd03271 ABC_UvrA_II The excisi 96.5 0.0017 3.7E-08 73.1 3.6 34 421-456 8-41 (261)
426 cd03275 ABC_SMC1_euk Eukaryoti 96.5 0.002 4.4E-08 71.5 3.8 26 437-462 23-48 (247)
427 smart00382 AAA ATPases associa 96.5 0.0024 5.3E-08 61.1 3.8 27 435-461 1-27 (148)
428 PRK08149 ATP synthase SpaL; Va 96.5 0.0023 5E-08 76.5 4.4 40 420-462 138-177 (428)
429 cd02025 PanK Pantothenate kina 96.5 0.0014 3.1E-08 71.8 2.2 25 438-462 1-25 (220)
430 PRK03846 adenylylsulfate kinas 96.4 0.0018 4E-08 69.4 3.0 43 434-477 22-64 (198)
431 PF03193 DUF258: Protein of un 96.4 0.0024 5.3E-08 67.0 3.8 27 435-461 34-60 (161)
432 COG1245 Predicted ATPase, RNas 96.4 0.0024 5.2E-08 75.5 4.0 37 431-467 95-131 (591)
433 PRK07960 fliI flagellum-specif 96.4 0.002 4.3E-08 77.3 2.9 40 423-462 162-201 (455)
434 TIGR02788 VirB11 P-type DNA tr 96.3 0.0029 6.3E-08 72.7 4.0 30 433-462 141-170 (308)
435 cd00071 GMPK Guanosine monopho 96.3 0.0024 5.3E-08 64.8 3.0 24 438-461 1-24 (137)
436 PF13207 AAA_17: AAA domain; P 96.3 0.0031 6.7E-08 61.4 3.3 23 438-460 1-23 (121)
437 PRK14721 flhF flagellar biosyn 96.3 0.0031 6.8E-08 75.3 3.8 29 432-460 187-215 (420)
438 cd02026 PRK Phosphoribulokinas 96.2 0.0027 5.7E-08 72.0 2.9 25 438-462 1-25 (273)
439 cd01136 ATPase_flagellum-secre 96.2 0.0038 8.2E-08 72.4 4.2 37 426-462 59-95 (326)
440 TIGR02524 dot_icm_DotB Dot/Icm 96.2 0.0032 6.9E-08 74.0 3.6 29 434-462 132-160 (358)
441 PRK08972 fliI flagellum-specif 96.1 0.0034 7.3E-08 75.2 3.3 38 424-461 150-187 (444)
442 PF01926 MMR_HSR1: 50S ribosom 96.1 0.0041 8.9E-08 60.4 3.1 21 439-459 2-22 (116)
443 TIGR01360 aden_kin_iso1 adenyl 96.1 0.003 6.6E-08 66.0 2.4 27 436-462 3-32 (188)
444 PRK06995 flhF flagellar biosyn 96.1 0.0039 8.5E-08 75.7 3.5 29 433-461 253-281 (484)
445 TIGR03498 FliI_clade3 flagella 96.1 0.0041 8.9E-08 74.3 3.6 39 424-462 128-166 (418)
446 PF10446 DUF2457: Protein of u 96.1 0.0044 9.5E-08 72.9 3.6 9 354-362 280-288 (458)
447 PRK00098 GTPase RsgA; Reviewed 96.1 0.0052 1.1E-07 70.4 4.1 28 435-462 163-190 (298)
448 cd03284 ABC_MutS1 MutS1 homolo 96.0 0.0041 9E-08 68.0 3.0 34 424-460 21-54 (216)
449 PRK07721 fliI flagellum-specif 96.0 0.0045 9.8E-08 74.5 3.6 40 420-462 145-184 (438)
450 cd04159 Arl10_like Arl10-like 96.0 0.0043 9.4E-08 61.5 2.8 23 439-461 2-24 (159)
451 KOG0461|consensus 96.0 0.0063 1.4E-07 69.6 4.2 209 607-823 257-494 (522)
452 cd04155 Arl3 Arl3 subfamily. 95.9 0.006 1.3E-07 62.6 3.6 24 437-460 15-38 (173)
453 cd01854 YjeQ_engC YjeQ/EngC. 95.9 0.0057 1.2E-07 69.7 3.7 28 436-463 161-188 (287)
454 PRK10416 signal recognition pa 95.9 0.0047 1E-07 71.5 3.0 29 434-462 112-140 (318)
455 TIGR00150 HI0065_YjeE ATPase, 95.9 0.0069 1.5E-07 61.7 3.7 29 433-461 19-47 (133)
456 PLN02796 D-glycerate 3-kinase 95.9 0.0051 1.1E-07 71.6 3.0 27 436-462 100-126 (347)
457 TIGR01026 fliI_yscN ATPase Fli 95.8 0.0073 1.6E-07 72.8 4.3 37 425-461 152-188 (440)
458 cd04104 p47_IIGP_like p47 (47- 95.8 0.0071 1.5E-07 64.7 3.7 25 438-462 3-27 (197)
459 PRK05541 adenylylsulfate kinas 95.8 0.0065 1.4E-07 63.6 3.2 29 433-461 4-32 (176)
460 PRK05688 fliI flagellum-specif 95.8 0.0067 1.5E-07 73.0 3.7 41 418-461 153-193 (451)
461 PRK00889 adenylylsulfate kinas 95.8 0.0063 1.4E-07 63.7 3.1 28 434-461 2-29 (175)
462 PRK01889 GTPase RsgA; Reviewed 95.8 0.0065 1.4E-07 71.3 3.5 32 433-464 192-223 (356)
463 PRK05922 type III secretion sy 95.8 0.0071 1.5E-07 72.5 3.8 38 424-461 145-182 (434)
464 KOG2773|consensus 95.8 0.0029 6.2E-08 74.4 0.4 32 259-290 186-217 (483)
465 PRK10751 molybdopterin-guanine 95.7 0.006 1.3E-07 64.8 2.7 25 437-461 7-31 (173)
466 cd03287 ABC_MSH3_euk MutS3 hom 95.7 0.0059 1.3E-07 67.3 2.7 34 424-459 21-54 (222)
467 TIGR02546 III_secr_ATP type II 95.7 0.0092 2E-07 71.6 4.5 41 419-462 131-171 (422)
468 PRK14738 gmk guanylate kinase; 95.7 0.0078 1.7E-07 65.2 3.6 27 434-460 11-37 (206)
469 cd01876 YihA_EngB The YihA (En 95.7 0.0078 1.7E-07 60.2 3.1 23 439-461 2-26 (170)
470 KOG0062|consensus 95.6 0.006 1.3E-07 73.3 2.4 33 424-458 96-128 (582)
471 cd01131 PilT Pilus retraction 95.6 0.0077 1.7E-07 64.8 3.1 25 437-461 2-26 (198)
472 PF13671 AAA_33: AAA domain; P 95.6 0.0089 1.9E-07 59.7 3.3 24 438-461 1-24 (143)
473 COG0194 Gmk Guanylate kinase [ 95.6 0.0091 2E-07 63.9 3.4 26 435-460 3-28 (191)
474 PRK08233 hypothetical protein; 95.6 0.0097 2.1E-07 61.9 3.6 26 436-461 3-28 (182)
475 PRK07594 type III secretion sy 95.6 0.0072 1.6E-07 72.5 2.9 37 426-462 145-181 (433)
476 PF13304 AAA_21: AAA domain; P 95.5 0.0035 7.5E-08 65.9 0.0 23 438-460 1-23 (303)
477 PF08477 Miro: Miro-like prote 95.5 0.0095 2.1E-07 57.5 3.1 23 439-461 2-24 (119)
478 PRK09099 type III secretion sy 95.5 0.011 2.3E-07 71.3 4.0 40 419-461 149-188 (441)
479 TIGR03496 FliI_clade1 flagella 95.5 0.0094 2E-07 71.2 3.5 39 424-462 125-163 (411)
480 PRK08927 fliI flagellum-specif 95.5 0.0092 2E-07 71.7 3.2 39 423-461 145-183 (442)
481 TIGR00767 rho transcription te 95.5 0.0083 1.8E-07 71.1 2.8 37 425-461 157-193 (415)
482 cd01128 rho_factor Transcripti 95.4 0.012 2.7E-07 65.8 3.9 36 426-461 6-41 (249)
483 cd03227 ABC_Class2 ABC-type Cl 95.4 0.013 2.7E-07 61.0 3.8 27 435-461 20-46 (162)
484 PRK08533 flagellar accessory p 95.4 0.0099 2.2E-07 65.6 3.1 29 433-461 21-50 (230)
485 PLN02318 phosphoribulokinase/u 95.4 0.0099 2.2E-07 73.3 3.2 34 437-473 66-99 (656)
486 PRK07261 topology modulation p 95.4 0.011 2.4E-07 62.3 3.2 24 438-461 2-25 (171)
487 cd02019 NK Nucleoside/nucleoti 95.4 0.01 2.2E-07 53.3 2.5 23 438-460 1-23 (69)
488 TIGR00455 apsK adenylylsulfate 95.4 0.011 2.4E-07 62.4 3.2 29 433-461 15-43 (184)
489 PF13476 AAA_23: AAA domain; P 95.4 0.0096 2.1E-07 62.3 2.7 26 436-461 19-44 (202)
490 PRK09862 putative ATP-dependen 95.4 0.013 2.8E-07 71.7 4.0 41 423-465 199-239 (506)
491 cd04163 Era Era subfamily. Er 95.4 0.012 2.6E-07 58.6 3.2 24 437-460 4-27 (168)
492 cd04164 trmE TrmE (MnmE, ThdF, 95.4 0.013 2.8E-07 58.4 3.4 25 436-460 1-25 (157)
493 PRK14722 flhF flagellar biosyn 95.4 0.013 2.7E-07 69.3 3.7 29 432-460 133-161 (374)
494 cd01898 Obg Obg subfamily. Th 95.3 0.012 2.6E-07 60.0 2.9 22 439-460 3-24 (170)
495 PRK06936 type III secretion sy 95.3 0.014 3.1E-07 70.0 3.9 40 419-461 148-187 (439)
496 PF00485 PRK: Phosphoribulokin 95.3 0.011 2.5E-07 63.1 2.8 24 438-461 1-24 (194)
497 PF10662 PduV-EutP: Ethanolami 95.3 0.015 3.2E-07 60.0 3.5 25 438-462 3-27 (143)
498 PRK14737 gmk guanylate kinase; 95.3 0.015 3.3E-07 62.2 3.7 27 435-461 3-29 (186)
499 TIGR01313 therm_gnt_kin carboh 95.3 0.011 2.3E-07 61.0 2.5 22 439-460 1-22 (163)
500 PLN02165 adenylate isopentenyl 95.2 0.014 3.1E-07 67.7 3.7 28 434-461 41-68 (334)
No 1
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-113 Score=972.03 Aligned_cols=602 Identities=31% Similarity=0.516 Sum_probs=496.3
Q ss_pred CcccccCCCCcccccccCChHHHHHHHHHHHHHHhhhccCccccccCCcccccccccCCCCcchhhhhhhhhhhhhhccC
Q psy5893 316 EPKTHKDSKNPEEDTGLNWKSDLAQKAASAFLERQANIVNLAKYVYGDMEDVSVTMEGDEAPNKKVHRKRQAELTAKQKN 395 (1182)
Q Consensus 316 e~~~~~~~d~~rE~~~~~~k~~la~ka~eay~~rq~~~~~~~~~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n 395 (1182)
+.....++...++.+.+.|++.||.+ -+|.+...+..|++|++|.+...|..-..+=.++. +....
T Consensus 463 ~~a~dsDSqfdese~~~~w~~~~a~k--l~~sqs~kr~~ni~ki~y~e~lspeeci~e~kge~------------~~s~e 528 (1077)
T COG5192 463 EVAFDSDSQFDESEGNLRWKEGLASK--LAYSQSGKRGRNIQKIFYDESLSPEECIEEYKGES------------AKSSE 528 (1077)
T ss_pred hhccccccccccccccchhhhhhhhh--hhhhhcccccccccceeccccCCHHHHHHHhcccc------------ccccc
Confidence 33355677778889999999999998 46777767779999999987766633332110000 00000
Q ss_pred CCceeehhhhhcceeceeeeecccccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccc
Q psy5893 396 PKAFTFQSVIKGERKFRRKEDIQAKKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLI 475 (1182)
Q Consensus 396 pka~~~~~~~k~~~~~~~~~~~~~~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeE 475 (1182)
..- .++-. ...+|++...... -+ .++.. .|.+.........|..
T Consensus 529 ~~~-v~~D~--~edff~vsk~~n~-~~---s~~~e---------------------------k~~~~~fe~L~kkw~s-- 572 (1077)
T COG5192 529 SDL-VVQDE--PEDFFDVSKVANE-SI---SSNHE---------------------------KLMESEFEELKKKWSS-- 572 (1077)
T ss_pred ccc-ccccC--chhhhhhhhhccc-cc---ccchh---------------------------hhchhHHHHHHHHHhh--
Confidence 000 00000 0014443322110 00 01111 1111000012223433
Q ss_pred cccccceeeecCcccccch-HHHhhhcCCCCCcccccCCccccccCcccCCCCCCCCCC-----CCCCCCCCCChhhHHH
Q psy5893 476 IKDSIRDCFVTGKWKASED-ASELLRLDDMDDDEELFGDFEDLETGEKHSGDKSGGGSG-----GVSGGGSGDDKPKTRA 549 (1182)
Q Consensus 476 LrdsIr~VFQTGkw~~~~~-~~~ll~~~~~~~d~e~~gdfedle~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 549 (1182)
.+.|..+||++....+.. .++|.+ |...|+|||||..|.....+-+++.. ..++..+.-+.+.++.
T Consensus 573 -~~~lk~RF~~~~~lds~eg~EEl~q-------d~E~gn~ed~~d~e~~~d~e~ees~G~s~t~~~~e~~~e~~~e~ErE 644 (1077)
T COG5192 573 -LAQLKSRFQKDATLDSIEGEEELIQ-------DDEKGNFEDLEDEENSSDNEMEESRGSSVTAENEESADEVDYETERE 644 (1077)
T ss_pred -HHHHHHHhhcccccccccchhhhhh-------chhccCcccccccccccccchhhccCCcccccchhhccccchHHHhh
Confidence 567888999987654422 233332 23468999999877654332222111 1111112235677788
Q ss_pred HHHHHHHhhhhhcccccCC-CCCCCCchHHHHHHHHHHHHHHhhhhhcccchhhhhhhcccCCCcEEEEEEecCChhhhh
Q psy5893 550 ELMEKKRKLKEQFDAEYDD-KDGGGNTYYDDLKTQATRQAELNRQQFHDLDDNARVELEGFRAGLYIRVELDGMPCELIE 628 (1182)
Q Consensus 550 ~~~~k~r~lK~~~~s~~d~-~e~~~~~~y~~~k~~~~~q~~~n~~~~~~~~~~~r~~~eg~~~G~yVri~i~~vp~~~~~ 628 (1182)
+..+|+..|+..|.-+-.. .|.....||...|+.+.+|..+||.+|+.|++++|+.++||++|.||||+|+.||.+|+.
T Consensus 645 ~na~kKE~lr~~Fe~eer~d~e~~d~dwy~~eK~ki~~ql~inr~e~e~M~Pe~r~~Ieg~raG~YVriv~~~vP~efv~ 724 (1077)
T COG5192 645 ENARKKEELRGNFELEERGDPEKKDVDWYTEEKRKIEEQLKINRSEFETMVPESRVVIEGYRAGRYVRIVLSHVPLEFVD 724 (1077)
T ss_pred hhhhhhhhhhcceeehhccCccccccchHHHHHHHHHHHHhhhhhhhhhcCCcceeEeecccccceEEEEeccCCHHHHh
Confidence 8999999999999877643 344567799999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCceEEEecccccceeeEEEEEEEeccccccccccCCcEEEEecceeeeeecceecccCcceeeeeeccCCCceEE
Q psy5893 629 NFDPTYPLIVGGLQPGEETIGCVRARVKKHRWYGKILKSGNPVIMSVGWRRFQTLPIYSKQEDNMRYRMLKYTPQHVACM 708 (1182)
Q Consensus 629 ~f~~~~plil~gLl~~E~k~~v~~~~ikrh~~~~~~lkskdpli~s~G~RRf~~~Piys~~~~n~r~k~lky~~~~~~c~ 708 (1182)
+|++.||+|+|||||.|.++|+||.+|+|||||++|||++||||||+|||||||+||||+.+..+|+|||||||+||||.
T Consensus 725 ~fn~r~piV~GGlLp~E~~~giVq~rikrhrWhKKILKTNdPlifS~GWRRFQsiPvys~~DsrTRnRMlKYTPEhmhCn 804 (1077)
T COG5192 725 EFNSRYPIVLGGLLPAEKEMGIVQGRIKRHRWHKKILKTNDPLIFSVGWRRFQSIPVYSMKDSRTRNRMLKYTPEHMHCN 804 (1077)
T ss_pred hcCCCCcEEeccccchhhhhhhhhhHHHHhHHHHHHhccCCCeEEEechhhhcccceeeecchhhhhhhhhcCccceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecccCCceEEEEEecccCCCCcEEEEEEEEecCCCCceeeEeEEEeeceeEEeeceEEEeccCCChHhhccccCc
Q psy5893 709 AHFWGPITRSGTGFLAVQDVAKREPGFRVIATGTILDANQTAEVTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGA 788 (1182)
Q Consensus 709 atfygPi~~~~t~vl~~~~~~~~~~~~ri~atG~v~~~d~~~~i~Kki~LtG~P~KI~K~ta~Ir~MF~s~~eV~~F~~~ 788 (1182)
+|||||+++|||||+++|+. .+.|||+|+|+|.++|.+..|||||||+|||++|++||||||+||+|.+||++|+||
T Consensus 805 ~sFYGP~v~pntgFc~Vqse---~g~frv~a~g~i~dv~~~~~lvkklklvg~p~qi~qnt~fvrdmfts~lev~kfega 881 (1077)
T COG5192 805 VSFYGPVVPPNTGFCAVQSE---KGDFRVLALGTITDVNGDAKLVKKLKLVGYPKQIVQNTVFVRDMFTSDLEVLKFEGA 881 (1077)
T ss_pred eeeecCccCCCCCceeEEec---CCceEEEEeeeeEeccccHHHHhhhhhccCcHHHhhhhHhHHHhhhhhhHHHhhccc
Confidence 99999999999999999984 456999999999999999999999999999999999999999999999999999999
Q ss_pred eeEeccCcCceeecccCCCCceeEEEeccccccCCEEEEeccccccCCcccccccccCCCCCcCCcccccchhhhHHHHh
Q psy5893 789 KIRTVSGIRGQIKKALNKPQGAFRATFEDKIMLSDIVFCRTWYKVDIPKLYNPVTSLLLPPEQKDSWTGMKTTGQLKRER 868 (1182)
Q Consensus 789 ~l~T~sGirG~IK~~lg~t~G~fka~Fe~ki~~~D~V~lr~~y~~~~pk~y~p~~~~~~~~~~~~~w~~m~~~~~lr~~~ 868 (1182)
+|+||||+||+||.|+| .+|++||.|+++|+|||||.||+||||.+.+||+||++||+ .|+|+|.+||+|...
T Consensus 882 ~lk~vsglrgqvk~~~~-k~g~yra~fe~kmlmsdii~lr~~~pv~v~r~~~pv~~ll~------~wrglr~~~eir~sl 954 (1077)
T COG5192 882 SLKAVSGLRGQVKGPHG-KNGEYRAVFEGKMLMSDIITLRCFVPVEVHRIFIPVDNLLG------KWRGLRRLHEIRESL 954 (1077)
T ss_pred ceeeeccccccccCccC-CCccchheeccchhhhheeeEEeeeeeEEEEeeccHHHHHH------HHhhhHHHHHHHHHh
Confidence 99999999999999997 69999999999999999999999999999999999999997 699999999999999
Q ss_pred CCCCCCCCCCCCccccCCCCCCccccCChhhhhcCCCCCCccccCCCCCCCccccccCChhhHHHHHHHHHHHHhhHhHH
Q psy5893 869 GLHNDPQFDSMYTPIVRKPKTMTKLKIPKALQKELPYHMKPKYKSKETPKPQRVAVIHSEREQKVASLMKMLRTNYSEKN 948 (1182)
Q Consensus 869 ~~~~~~~~ds~y~~i~r~~~~f~~l~ip~~l~~~lpf~~k~k~~~~~~~~~~~~av~~~~~e~k~~~l~~~l~t~~~~~~ 948 (1182)
|+..|.+++|.|-.++|..++|+.+.+|+++|+.|||+ +++.+++.||+++.-|.|.|....+|..-++.+.|.
T Consensus 955 ~l~~~~~p~~~~~~~e~~~~~~~~~~~pr~ie~~lp~~------kr~~~~~srr~~~~~~~e~r~k~~ik~~i~~~r~kd 1028 (1077)
T COG5192 955 GLTHSYAPQNDSSSEEMGYGAEEDYSLPREIESKLPLD------KRSIAVVSRRIELPVPPECREKHEIKDRIVKERIKD 1028 (1077)
T ss_pred CCCCCCCCCccchhhhhhccccccccCcHhHHhhCCcc------hhhhhheeeeeeccCChhhhHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999 334588999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy5893 949 SKEKQAMKARMVALKLRAKAAEEAKQQRQRVMKKDIFRTLRMP 991 (1182)
Q Consensus 949 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~k~~~k~i~rshG~p 991 (1182)
.++|++++-.++++.++.+|.|++|.+|.|+.+++.|...|..
T Consensus 1029 ~~~ke~~~s~~r~k~~~i~k~e~er~qr~r~~~~d~~~e~~kk 1071 (1077)
T COG5192 1029 QEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMAKK 1071 (1077)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999988865
No 2
>PF04950 DUF663: Protein of unknown function (DUF663); InterPro: IPR007034 This domain is found at the C terminus of the ribosome biogenesis protein BMS1 and TSR1 families, which may act as a molecular switch during maturation of the 40S ribosomal subunit in the nucleolus.; PDB: 1WB1_D 1WB3_B 1WB2_A.
Probab=100.00 E-value=1.5e-92 Score=789.58 Aligned_cols=289 Identities=44% Similarity=0.766 Sum_probs=79.2
Q ss_pred hhhHHHHHHHHHHhhhhhcccccCCCC--CCCCchHHHHHHHHHHHHHHhhhhhc-ccchhhhhhhcccCCCcEEEEEEe
Q psy5893 544 KPKTRAELMEKKRKLKEQFDAEYDDKD--GGGNTYYDDLKTQATRQAELNRQQFH-DLDDNARVELEGFRAGLYIRVELD 620 (1182)
Q Consensus 544 ~~~~~~~~~~k~r~lK~~~~s~~d~~e--~~~~~~y~~~k~~~~~q~~~n~~~~~-~~~~~~r~~~eg~~~G~yVri~i~ 620 (1182)
.+..||+||+|||||||+++|+||++| ...+..|.++.++.+++++.+++.-+ .++++.+.+.+|+.||+||+|+|+
T Consensus 6 ~~~~ar~Rf~KyRgLKs~r~s~wD~~E~~~~lP~~y~ri~~f~n~~~~k~~~~~~~~~~~~~~~~~~g~~~G~YVrI~i~ 85 (297)
T PF04950_consen 6 PDEPARERFQKYRGLKSFRTSEWDPDEKDPNLPEDYSRIFQFENFKRTKKRALKEAELDEEEREQEEGVRPGTYVRIEIS 85 (297)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 346789999999999999999999976 23466778888888887777765544 688889999999999999999999
Q ss_pred cCChhhhhccCCCCceEEEecccccceeeEEEEEEEeccccccccccCCcEEEEecceeeeeecceecccCcceeeeeec
Q psy5893 621 GMPCELIENFDPTYPLIVGGLQPGEETIGCVRARVKKHRWYGKILKSGNPVIMSVGWRRFQTLPIYSKQEDNMRYRMLKY 700 (1182)
Q Consensus 621 ~vp~~~~~~f~~~~plil~gLl~~E~k~~v~~~~ikrh~~~~~~lkskdpli~s~G~RRf~~~Piys~~~~n~r~k~lky 700 (1182)
+||++++++|++++||||||||+||+|+||||++|+||+||++|||||||||||||||||||+||||++++|+||||+||
T Consensus 86 ~vP~~~~~~~~~~~Plil~gLl~~E~k~svv~~~ikrh~~~~~~lkSkd~li~~~G~Rrf~~~Pifs~~~~~~r~k~~k~ 165 (297)
T PF04950_consen 86 NVPCEFVENFDPSYPLILGGLLPHEQKMSVVNFRIKRHRWYEKPLKSKDPLIFSCGWRRFQTIPIFSQEDNNNRHKYEKY 165 (297)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceEEEEEEeecccCCceEEEEEecccCCCCcEEEEEEEEecCCCCceeeEeEEEeeceeEEeeceEEEeccCCChH
Q psy5893 701 TPQHVACMAHFWGPITRSGTGFLAVQDVAKREPGFRVIATGTILDANQTAEVTKKLKLTGVPMKIYKKTAFIKDMFNSTL 780 (1182)
Q Consensus 701 ~~~~~~c~atfygPi~~~~t~vl~~~~~~~~~~~~ri~atG~v~~~d~~~~i~Kki~LtG~P~KI~K~ta~Ir~MF~s~~ 780 (1182)
+|+|+||+||||||++|||||||+|+..++...+|||+|||+|+++|++++|+|||+|+||||||||||||||+||||++
T Consensus 166 ~~~~~~~~at~ygPi~~~~~~vl~f~~~~~~~~~~~l~atG~v~~~d~~~~i~Kki~L~G~P~ki~k~~a~vr~MF~~~~ 245 (297)
T PF04950_consen 166 LPEGMHCVATFYGPITFPPTPVLAFKESSNSGSSFRLVATGSVLNVDPDRIIVKKIKLTGYPFKIHKRTAVVRGMFFNPE 245 (297)
T ss_dssp ------------------------------TTTSS-B-EEEEEEEE--GGGS-B--EEEEEEEEEESSSCEECSSSSTCC
T ss_pred cccccccccccccccccccccccccccccccCCCceEEEeeeEeCCCCcchhheeeeecCchheEECceEEhhhhcCCHH
Confidence 99999999999999999999999999876666689999999999999999999999999999999999999999999999
Q ss_pred hhccccCceeEeccCcCceeecccCCCCceeEEEeccccccCCEEEEeccccc
Q psy5893 781 EVAKFEGAKIRTVSGIRGQIKKALNKPQGAFRATFEDKIMLSDIVFCRTWYKV 833 (1182)
Q Consensus 781 eV~~F~~~~l~T~sGirG~IK~~lg~t~G~fka~Fe~ki~~~D~V~lr~~y~~ 833 (1182)
||+||+||+|+|+||+|||||+||| |||+|||+|+++|++||||||++|++|
T Consensus 246 dv~~F~~~~l~T~~G~rG~Ik~~lg-t~G~fka~F~~~i~~~D~V~~~lykrV 297 (297)
T PF04950_consen 246 DVAWFKGAELRTKSGIRGHIKESLG-THGYFKATFEDKIKQSDIVFMRLYKRV 297 (297)
T ss_dssp HHHHS-S--BEETTS-BEEEEE-BT-TTTBBEEEESS---SS-EEEEE-----
T ss_pred HHHhhcCCEEEeeccCCCEECeeEC-CCCcEEEEECCcCCCCCEEEEecCCCC
Confidence 9999999999999999999999995 999999999999999999999999875
No 3
>KOG1980|consensus
Probab=100.00 E-value=4.3e-76 Score=677.94 Aligned_cols=285 Identities=29% Similarity=0.444 Sum_probs=266.8
Q ss_pred hhhHHHHHHHHHHhhhhhcccccCCCCCCCCchHHHHHHHHHHHHHHhhhhhcccchhhhhhhcccCCCcEEEEEEecCC
Q psy5893 544 KPKTRAELMEKKRKLKEQFDAEYDDKDGGGNTYYDDLKTQATRQAELNRQQFHDLDDNARVELEGFRAGLYIRVELDGMP 623 (1182)
Q Consensus 544 ~~~~~~~~~~k~r~lK~~~~s~~d~~e~~~~~~y~~~k~~~~~q~~~n~~~~~~~~~~~r~~~eg~~~G~yVri~i~~vp 623 (1182)
....||+||+|||||||+++|.||.+|+ .|..|.+|.++.+++.+.|+..-+. +. .++| .+|+||||+|+|||
T Consensus 463 ~d~~ArerfqkYRGLksl~Ts~Wd~~En-~P~dy~rlfqF~Nyrntkk~i~kk~-~~----e~~~-~~G~~V~v~l~nvP 535 (754)
T KOG1980|consen 463 PDESARERFQKYRGLKSLRTSPWDAKEN-LPADYARLFQFQNYRNTKKRILKKE-DN----EAEA-IPGQYVRVFLRNVP 535 (754)
T ss_pred CChHHHHHHHHhccccccccCCCccccc-CcHHHHHHHhhhhhhhHHHHhhhhc-cc----cccc-CCCceEEEEeecCc
Confidence 3457899999999999999999999986 5667899999999999888754431 11 1223 69999999999999
Q ss_pred hhhhhccCCCCceEEEecccccceeeEEEEEEEeccccccccccCCcEEEEecceeeeeecceecccCcceeeeeeccCC
Q psy5893 624 CELIENFDPTYPLIVGGLQPGEETIGCVRARVKKHRWYGKILKSGNPVIMSVGWRRFQTLPIYSKQEDNMRYRMLKYTPQ 703 (1182)
Q Consensus 624 ~~~~~~f~~~~plil~gLl~~E~k~~v~~~~ikrh~~~~~~lkskdpli~s~G~RRf~~~Piys~~~~n~r~k~lky~~~ 703 (1182)
..+++.|.+..+|||+|||+||+||+|+||.++||+.|+.||||+.+|||+||+|||.++|+||+++.|++|||.||+|+
T Consensus 536 ~~i~E~~~~~~~lvvfglL~hEhKmtV~Nfvl~r~p~~e~Plkske~livq~G~Rrf~i~PlfSs~t~ndkhK~eRfl~~ 615 (754)
T KOG1980|consen 536 VSILEAIKKQLLLVVFGLLPHEHKMTVLNFVLQRHPGYEEPLKSKEELIVQCGFRRFDINPLFSSHTPNDKHKYERFLPP 615 (754)
T ss_pred HHHHHHHhhccceeeeeccchhhhheeeEEEEecCCCCCccccccceeEEEeccceEEeccccccCCccchhhhhhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEEeecccCCceEEEEEecccCCCCcEEEEEEEEecCCCCceeeEeEEEeeceeEEeeceEEEeccCCChHhhc
Q psy5893 704 HVACMAHFWGPITRSGTGFLAVQDVAKREPGFRVIATGTILDANQTAEVTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVA 783 (1182)
Q Consensus 704 ~~~c~atfygPi~~~~t~vl~~~~~~~~~~~~ri~atG~v~~~d~~~~i~Kki~LtG~P~KI~K~ta~Ir~MF~s~~eV~ 783 (1182)
.+..+|||||||+|+++|||+|+..+. ...+++|||+++++||+|+|+||.+|+||||||||+.|+|||||||++||.
T Consensus 616 ~~a~vaTviaPI~F~ps~vL~FK~s~~--~~~~LiAtG~~l~~dpdRiv~KRaVLsGhPfKi~kk~v~VRYMFFn~EDV~ 693 (754)
T KOG1980|consen 616 DEAVVATVIAPITFGPSPVLIFKKSSD--GSLELIATGSLLNCDPDRIVAKRAVLSGHPFKIHKKYVVVRYMFFNREDVE 693 (754)
T ss_pred cceEEEEEEeccccCCcceEEEEeCCC--cccceeeeeeeeccCCcceeEeeeeecCCCceeeeeeEEEeeecCCHhHee
Confidence 999999999999999999999987653 378999999999999999999999999999999999999999999999999
Q ss_pred cccCceeEeccCcCceeecccCCCCceeEEEeccccccCCEEEEeccccccCCcc-c
Q psy5893 784 KFEGAKIRTVSGIRGQIKKALNKPQGAFRATFEDKIMLSDIVFCRTWYKVDIPKL-Y 839 (1182)
Q Consensus 784 ~F~~~~l~T~sGirG~IK~~lg~t~G~fka~Fe~ki~~~D~V~lr~~y~~~~pk~-y 839 (1182)
||+|++|+|++||+||||+||| |||+|||+|+++|+.+|+|+| +||||+||+| |
T Consensus 694 wFKpIqL~Tk~gR~GhIKEplG-THG~fKc~FdgkLksqDtV~M-sLYKRvfP~~~y 748 (754)
T KOG1980|consen 694 WFKPIQLYTKSGRTGHIKEPLG-THGYFKCYFDGKLKSQDTVMM-SLYKRVFPKWTY 748 (754)
T ss_pred eecceeeecccccccccccccc-CcceeEEEecCcccccchHHH-HHHHhhcccccc
Confidence 9999999999999999999997 999999999999999999999 8999999999 5
No 4
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.5e-70 Score=618.86 Aligned_cols=89 Identities=60% Similarity=1.084 Sum_probs=87.7
Q ss_pred HHHhcCCCceeeeeccccccCCchhhhHHHHHhhhhhhhhhcCCeeEEEecccccCccchHHHhhhhhceeeeecccccc
Q psy5893 984 IFRTLRMPKVMGVLTHLDMLKNNKTLKTTKKMLKHRFWTEVYAGAKLFYLSGIVHGEYMKNEVKNLGRFIAVMKFRPLIW 1063 (1182)
Q Consensus 984 i~rshG~p~v~~vlthld~~~~~~~l~~~kk~lk~rf~~e~~~g~k~fylsg~~~g~Y~~~ei~nl~r~i~v~k~rpl~w 1063 (1182)
|+..|||||||||+||||+|++.++||..||+|||||||||||||||||||||.||+|+++||.||+|||||||||||.|
T Consensus 157 il~~HGmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~nGRYpDreilnLsRfisVMKfRPl~W 236 (1077)
T COG5192 157 ILISHGMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVENGRYPDREILNLSRFISVMKFRPLEW 236 (1077)
T ss_pred HHhhcCCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecccccCCCCCHHHHHHHHHHhhhccccccc
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCceEEE
Q psy5893 1064 QTTHSYMLV 1072 (1182)
Q Consensus 1064 r~~hpy~~~ 1072 (1182)
|+.|||||+
T Consensus 237 rn~HPy~la 245 (1077)
T COG5192 237 RNMHPYVLA 245 (1077)
T ss_pred ccCCceeeh
Confidence 999999997
No 5
>COG5177 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=5.1e-61 Score=539.32 Aligned_cols=286 Identities=25% Similarity=0.318 Sum_probs=264.1
Q ss_pred hHHHHHHHHHHhhhhhcccccCC--CCCCCCchHHHHHHHHHHHHHHhhhhhcccchhhhhhhcccCCCcEEEEEEecCC
Q psy5893 546 KTRAELMEKKRKLKEQFDAEYDD--KDGGGNTYYDDLKTQATRQAELNRQQFHDLDDNARVELEGFRAGLYIRVELDGMP 623 (1182)
Q Consensus 546 ~~~~~~~~k~r~lK~~~~s~~d~--~e~~~~~~y~~~k~~~~~q~~~n~~~~~~~~~~~r~~~eg~~~G~yVri~i~~vp 623 (1182)
..+++|+.+||||+++.+|.|+. ++...|..|.+|..+.+++...|+..-+. ...-..+|+.|||.|+ +|
T Consensus 475 e~aier~k~YRGlrnLytc~w~~de~dps~P~ewk~L~~f~nyrn~kn~~vk~~-------~~~~a~~G~~vri~lr-~p 546 (769)
T COG5177 475 ESAIERYKEYRGLRNLYTCSWRSDEKDPSFPEEWKSLVFFDNYRNAKNLVVKKD-------NESVAPDGQMVRIKLR-FP 546 (769)
T ss_pred HHHHHHHHHhcccccccccccccccCCCCChHHHhhheeccchhhhhhheecCC-------ccccCCCCcEEEEEEe-cc
Confidence 45899999999999999999985 45567788999999999999988865443 2234789999999999 99
Q ss_pred hhhhhcc-CCCCceEEEecccccceeeEEEEEEEeccccccccccCCcEEEEecceeeeeecceeccc--Ccceeeeeec
Q psy5893 624 CELIENF-DPTYPLIVGGLQPGEETIGCVRARVKKHRWYGKILKSGNPVIMSVGWRRFQTLPIYSKQE--DNMRYRMLKY 700 (1182)
Q Consensus 624 ~~~~~~f-~~~~plil~gLl~~E~k~~v~~~~ikrh~~~~~~lkskdpli~s~G~RRf~~~Piys~~~--~n~r~k~lky 700 (1182)
..+++.+ +|..-|+|+|||.||+|.+|+||+++||..|+.||+|+++|++++|.|||.++|+||+.. +|+-|||.||
T Consensus 547 ~~l~E~~~~p~~llvvygll~yE~k~tV~nFs~~rh~eye~P~~s~E~~vvq~G~rr~~i~Pl~s~~s~s~Nn~qKy~r~ 626 (769)
T COG5177 547 KFLYEGLIEPQILLVVYGLLEYEDKKTVHNFSLQRHFEYEVPLKSEESMVVQLGHRRVDICPLISKGSNSPNNNQKYFRR 626 (769)
T ss_pred HHHHhhhcccceeeeeeehhhhcchhhhhhhhhhhhhcccCCCCcccceeeeeccceEEEeehhccCCCCCcchHHHHhh
Confidence 9999987 567778889999999999999999999999999999999999999999999999999955 3889999999
Q ss_pred cCCCceEEEEEEeecccCCceEEEEEecccCCCCcEEEEEEEEecCCCCceeeEeEEEeeceeEEeeceEEEeccCCChH
Q psy5893 701 TPQHVACMAHFWGPITRSGTGFLAVQDVAKREPGFRVIATGTILDANQTAEVTKKLKLTGVPMKIYKKTAFIKDMFNSTL 780 (1182)
Q Consensus 701 ~~~~~~c~atfygPi~~~~t~vl~~~~~~~~~~~~ri~atG~v~~~d~~~~i~Kki~LtG~P~KI~K~ta~Ir~MF~s~~ 780 (1182)
+|+....+|||+|||.|++.|+|+|+..+....+.+++|||+.+++|.+|+|+||.+|||||||+||+.++||||||||+
T Consensus 627 l~p~~~~vas~I~Pi~Fg~spvi~fkkS~~d~~s~~l~a~g~~~n~d~~rviakrAvLtGhPFk~hK~~vtvryMFf~pE 706 (769)
T COG5177 627 LKPLESGVASFIGPISFGLSPVIIFKKSALDELSATLLASGGMNNFDGDRVIAKRAVLTGHPFKNHKRYVTVRYMFFSPE 706 (769)
T ss_pred cCccceeeeEEEcceeccCcceEEEccCccchhhhhhhhcccccccCcchhhhhhhhhcCCCcccceeEEEEeeecCCHh
Confidence 99999999999999999999999998776555689999999999999999999999999999999999999999999999
Q ss_pred hhccccCceeEeccCcCceeecccCCCCceeEEEeccccccCCEEEEeccccccCCccccc
Q psy5893 781 EVAKFEGAKIRTVSGIRGQIKKALNKPQGAFRATFEDKIMLSDIVFCRTWYKVDIPKLYNP 841 (1182)
Q Consensus 781 eV~~F~~~~l~T~sGirG~IK~~lg~t~G~fka~Fe~ki~~~D~V~lr~~y~~~~pk~y~p 841 (1182)
||.||++++|+|++|++|.||+||| |||||||||+++|+.+|+|.| ++|||.||.-+-|
T Consensus 707 dV~wFk~Iqlftk~grtGfIKeplG-ThGyFKatF~gki~~qD~VaM-SLYKRm~p~p~~~ 765 (769)
T COG5177 707 DVMWFKNIQLFTKRGRTGFIKEPLG-THGYFKATFSGKIKSQDKVAM-SLYKRMFPEPQLP 765 (769)
T ss_pred HeeeecchhhhhhcCccceeccccc-CcceeeEEecCcccccchhhH-HHHHHhccCcccc
Confidence 9999999999999999999999997 999999999999999999999 9999999965444
No 6
>PF04950 DUF663: Protein of unknown function (DUF663); InterPro: IPR007034 This domain is found at the C terminus of the ribosome biogenesis protein BMS1 and TSR1 families, which may act as a molecular switch during maturation of the 40S ribosomal subunit in the nucleolus.; PDB: 1WB1_D 1WB3_B 1WB2_A.
Probab=99.95 E-value=3.3e-29 Score=280.86 Aligned_cols=148 Identities=36% Similarity=0.613 Sum_probs=0.9
Q ss_pred hhHHHHHhhhhhhhhhcCCeeEEEecccccCccchHHHhhhhhceeeeeccccccccCCceEEEeeehhhhhhhccCCCC
Q psy5893 1009 LKTTKKMLKHRFWTEVYAGAKLFYLSGIVHGEYMKNEVKNLGRFIAVMKFRPLIWQTTHSYMLVTYTVMLKLLRLVGTTG 1088 (1182)
Q Consensus 1009 l~~~kk~lk~rf~~e~~~g~k~fylsg~~~g~Y~~~ei~nl~r~i~v~k~rpl~wr~~hpy~~~~~~~~~~~~~~~~~~~ 1088 (1182)
.+.++++....+ .+......-+ +|+..|.|.+.+|.|+...+ +..+.| ++|+||.- |. ..
T Consensus 50 ~~~~k~~~~~~~--~~~~~~~~~~-~g~~~G~YVrI~i~~vP~~~-~~~~~~-----~~Plil~g---------Ll--~~ 109 (297)
T PF04950_consen 50 FKRTKKRALKEA--ELDEEEREQE-EGVRPGTYVRIEISNVPCEF-VENFDP-----SYPLILGG---------LL--PH 109 (297)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccc--cccccccccc-cccccccccccccccccccc-cccccc-----cccccccc---------cc--cc
Confidence 344444444444 4444444444 99999999999999987543 444554 67776631 11 46
Q ss_pred CcccceeeeeeeehhhhccccccCCceEeeccceeeeecccccccchhhhhhccccCCCcceeeeEeeccccCCCceEEE
Q psy5893 1089 NMNCFSFQARVKKHRWYGKILKSGNPVIMSVGWRRFQTLPIYSKQEDNMRYRMLKYTPQHVACMAHFWGPITRSGTGFLA 1168 (1182)
Q Consensus 1089 ~~~~~~~~~r~k~h~w~~~~lks~~p~i~s~g~rr~~~~p~~~~~~~~~r~r~~ky~p~~~~c~~~f~gp~~~~~t~~~~ 1168 (1182)
+.++++||+|||||+||+++|||+||||+|+|||||||+||||.+++|+|+||+||+|+||||+|+|||||+|||||+|+
T Consensus 110 E~k~svv~~~ikrh~~~~~~lkSkd~li~~~G~Rrf~~~Pifs~~~~~~r~k~~k~~~~~~~~~at~ygPi~~~~~~vl~ 189 (297)
T PF04950_consen 110 EQKMSVVNFRIKRHRWYEKPLKSKDPLIFSCGWRRFQTIPIFSQEDNNNRHKYEKYLPEGMHCVATFYGPITFPPTPVLA 189 (297)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccc
Q psy5893 1169 VQDVAKRE 1176 (1182)
Q Consensus 1169 ~~~~~~~~ 1176 (1182)
||++++..
T Consensus 190 f~~~~~~~ 197 (297)
T PF04950_consen 190 FKESSNSG 197 (297)
T ss_dssp ------TT
T ss_pred cccccccC
Confidence 99976553
No 7
>KOG1951|consensus
Probab=99.29 E-value=7.3e-12 Score=120.56 Aligned_cols=103 Identities=28% Similarity=0.374 Sum_probs=91.3
Q ss_pred cCChhhhhcCCCCCCccccC--CCCCCCcccc--ccCChhhHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5893 894 KIPKALQKELPYHMKPKYKS--KETPKPQRVA--VIHSEREQKVASLMKMLRTNYSEKNSKEKQAMKARMVALKLRAKAA 969 (1182)
Q Consensus 894 ~ip~~l~~~lpf~~k~k~~~--~~~~~~~~~a--v~~~~~e~k~~~l~~~l~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 969 (1182)
.||++||++|||+|+||.+. +.+.+.-.+| ||+.|+|+|+.++++++.|+++++..++++.++-++++++++.++.
T Consensus 1 ~iPKalqk~LPfkskpka~~~~k~~l~~~~r~~~vv~~p~e~K~~~~~~~v~t~~~~~~qk~K~~~~~krk~~~e~k~~~ 80 (115)
T KOG1951|consen 1 MIPKALQKALPFKSKPKAAKKRKRPLQDLQRADEVVAKPRERKARAVIDAVETARSFKRQKAKKTKKKKRKEYREKKAKK 80 (115)
T ss_pred CccHHHHHhCCccccchhhccccccccchhhcchhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999885 4455554555 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCceeee
Q psy5893 970 EEAKQQRQRVMKKDIFRTLRMPKVMGV 996 (1182)
Q Consensus 970 e~~~~~~~k~~~k~i~rshG~p~v~~v 996 (1182)
++...++.++.++..++.-|....|+-
T Consensus 81 ~~~~~~r~~~kkr~~~kk~~k~~~~~~ 107 (115)
T KOG1951|consen 81 EEPLEQREKEKKREGPKKVGKSTLIQC 107 (115)
T ss_pred hhhhhhhHHHHHHhhhcccchhHHhhh
Confidence 999999999999988888777655543
No 8
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.25 E-value=7e-12 Score=136.59 Aligned_cols=92 Identities=66% Similarity=1.144 Sum_probs=86.5
Q ss_pred HHHhcCCCceeeeeccccccCCchhhhHHHHHhhhhhhhhhcCCeeEEEecccccCccchHHHhhhhhceeeeecccccc
Q psy5893 984 IFRTLRMPKVMGVLTHLDMLKNNKTLKTTKKMLKHRFWTEVYAGAKLFYLSGIVHGEYMKNEVKNLGRFIAVMKFRPLIW 1063 (1182)
Q Consensus 984 i~rshG~p~v~~vlthld~~~~~~~l~~~kk~lk~rf~~e~~~g~k~fylsg~~~g~Y~~~ei~nl~r~i~v~k~rpl~w 1063 (1182)
.++.+|.|.+++|+|++|++...+.+.+.++.|+.+||.++++++|+|++|++.+|.|+.+|..|+.|+|.+++++++.|
T Consensus 127 ~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~~~~~e~~~~~r~i~~~~~~~~~~ 206 (225)
T cd01882 127 ILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGRYPKTEIHNLARFISVMKFRPLNW 206 (225)
T ss_pred HHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCCCCHHHHHHHHHHHHhCCCCCCee
Confidence 45668999999999999999888888899999999999999999999999999999999999999999999999999999
Q ss_pred ccCCceEEEeee
Q psy5893 1064 QTTHSYMLVTYT 1075 (1182)
Q Consensus 1064 r~~hpy~~~~~~ 1075 (1182)
|..|||||++..
T Consensus 207 r~~r~y~~~~~~ 218 (225)
T cd01882 207 RNSHPYVLADRM 218 (225)
T ss_pred ecCCCeEEEeee
Confidence 999999999653
No 9
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.10 E-value=6e-11 Score=126.88 Aligned_cols=69 Identities=22% Similarity=0.168 Sum_probs=57.4
Q ss_pred ccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccc---------ccccccceeeecCccc
Q psy5893 420 KKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTL---------IIKDSIRDCFVTGKWK 490 (1182)
Q Consensus 420 ~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdge---------ELrdsIr~VFQTGkw~ 490 (1182)
..+.+..+|++ +.+|++++||||||||||||||||++|..+ .+|.+.+++. .++..++++||..+++
T Consensus 14 ~~~VLkgi~l~--v~~Gevv~iiGpSGSGKSTlLRclN~LE~~--~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLF 89 (240)
T COG1126 14 DKEVLKGISLS--VEKGEVVVIIGPSGSGKSTLLRCLNGLEEP--DSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLF 89 (240)
T ss_pred CeEEecCccee--EcCCCEEEEECCCCCCHHHHHHHHHCCcCC--CCceEEECCEeccchhhHHHHHHhcCeeccccccc
Confidence 45678888888 999999999999999999999999999995 4555555543 3567899999999998
Q ss_pred cc
Q psy5893 491 AS 492 (1182)
Q Consensus 491 ~~ 492 (1182)
.-
T Consensus 90 PH 91 (240)
T COG1126 90 PH 91 (240)
T ss_pred cc
Confidence 53
No 10
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.09 E-value=7.1e-11 Score=135.16 Aligned_cols=76 Identities=18% Similarity=0.078 Sum_probs=61.1
Q ss_pred eceeeeecccccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccccc------ccccee
Q psy5893 410 KFRRKEDIQAKKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIK------DSIRDC 483 (1182)
Q Consensus 410 ~~~~~~~~~~~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeELr------dsIr~V 483 (1182)
+-.+...+.... ++..+|+. +..|++++|+||||||||||||+|+||.. +.+|.+.+++..+. +.|+++
T Consensus 6 l~~v~K~yg~~~-~l~~i~l~--i~~Gef~vllGPSGcGKSTlLr~IAGLe~--~~~G~I~i~g~~vt~l~P~~R~iamV 80 (338)
T COG3839 6 LKNVRKSFGSFE-VLKDVNLD--IEDGEFVVLLGPSGCGKSTLLRMIAGLEE--PTSGEILIDGRDVTDLPPEKRGIAMV 80 (338)
T ss_pred EeeeEEEcCCce-eeecceEE--EcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCChhHCCEEEE
Confidence 344444444322 77888888 99999999999999999999999999999 56777777777665 489999
Q ss_pred eecCccc
Q psy5893 484 FVTGKWK 490 (1182)
Q Consensus 484 FQTGkw~ 490 (1182)
||+..+.
T Consensus 81 FQ~yALy 87 (338)
T COG3839 81 FQNYALY 87 (338)
T ss_pred eCCcccc
Confidence 9998775
No 11
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.05 E-value=1.5e-10 Score=133.24 Aligned_cols=68 Identities=22% Similarity=0.105 Sum_probs=57.4
Q ss_pred ccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc------ccccceeeecCcccc
Q psy5893 420 KKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII------KDSIRDCFVTGKWKA 491 (1182)
Q Consensus 420 ~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL------rdsIr~VFQTGkw~~ 491 (1182)
...++.++|++ +++|+|++|+||||||||||||||+|+.. |.+|.+.++++.+ .+.|+++||+..++.
T Consensus 17 ~~~av~~isl~--i~~Gef~~lLGPSGcGKTTlLR~IAGfe~--p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFP 90 (352)
T COG3842 17 DFTAVDDISLD--IKKGEFVTLLGPSGCGKTTLLRMIAGFEQ--PSSGEILLDGEDITDVPPEKRPIGMVFQSYALFP 90 (352)
T ss_pred CeeEEecceee--ecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCChhhcccceeecCcccCC
Confidence 44567777777 99999999999999999999999999999 5667777777655 468999999998873
No 12
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.03 E-value=1.9e-10 Score=125.79 Aligned_cols=67 Identities=22% Similarity=0.221 Sum_probs=56.7
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc---ccccceeeecC---cccc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII---KDSIRDCFVTG---KWKA 491 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL---rdsIr~VFQTG---kw~~ 491 (1182)
..++.++|++ +.+||||+||||||||||||||+|+||.. |.+|.+.+.+..+ ...++++||.. +|..
T Consensus 16 ~~vl~~i~L~--v~~GEfvsilGpSGcGKSTLLriiAGL~~--p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~T 88 (248)
T COG1116 16 VEVLEDINLS--VEKGEFVAILGPSGCGKSTLLRLIAGLEK--PTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLT 88 (248)
T ss_pred eEEeccceeE--ECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCcccCCCCCCEEEEeccCcccchhh
Confidence 4567777777 99999999999999999999999999999 5677788877755 46799999996 6653
No 13
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.02 E-value=2.3e-10 Score=123.82 Aligned_cols=76 Identities=20% Similarity=0.137 Sum_probs=59.5
Q ss_pred eeeeecccccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccc-----------cccccc
Q psy5893 412 RRKEDIQAKKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTL-----------IIKDSI 480 (1182)
Q Consensus 412 ~~~~~~~~~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdge-----------ELrdsI 480 (1182)
.+...|..++.++.+|++. +++||+|+||||||||||||||+|+|+..+ ++|.+.+++. .++..|
T Consensus 8 nl~k~yp~~~~aL~~Vnl~--I~~GE~VaiIG~SGaGKSTLLR~lngl~d~--t~G~i~~~g~~i~~~~~k~lr~~r~~i 83 (258)
T COG3638 8 NLSKTYPGGHQALKDVNLE--INQGEMVAIIGPSGAGKSTLLRSLNGLVDP--TSGEILFNGVQITKLKGKELRKLRRDI 83 (258)
T ss_pred eeeeecCCCceeeeeEeEE--eCCCcEEEEECCCCCcHHHHHHHHhcccCC--CcceEEecccchhccchHHHHHHHHhc
Confidence 3344444566788888888 999999999999999999999999999995 4555554443 235789
Q ss_pred ceeeecCcccc
Q psy5893 481 RDCFVTGKWKA 491 (1182)
Q Consensus 481 r~VFQTGkw~~ 491 (1182)
+++||..++-.
T Consensus 84 GmIfQ~~nLv~ 94 (258)
T COG3638 84 GMIFQQFNLVP 94 (258)
T ss_pred eeEeccCCccc
Confidence 99999998753
No 14
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.97 E-value=3.3e-10 Score=119.09 Aligned_cols=79 Identities=16% Similarity=0.078 Sum_probs=63.0
Q ss_pred eeceeeeecccccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccc-----------cc
Q psy5893 409 RKFRRKEDIQAKKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLI-----------IK 477 (1182)
Q Consensus 409 ~~~~~~~~~~~~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeE-----------Lr 477 (1182)
++-.|...|..+..++.+++++ +++|+++.|+|||||||||||++|++...| +.|.+.+++.+ ++
T Consensus 3 ~f~~V~k~Y~~g~~aL~~vs~~--i~~Gef~fl~GpSGAGKSTllkLi~~~e~p--t~G~i~~~~~dl~~l~~~~iP~LR 78 (223)
T COG2884 3 RFENVSKAYPGGREALRDVSFH--IPKGEFVFLTGPSGAGKSTLLKLIYGEERP--TRGKILVNGHDLSRLKGREIPFLR 78 (223)
T ss_pred eehhhhhhcCCCchhhhCceEe--ecCceEEEEECCCCCCHHHHHHHHHhhhcC--CCceEEECCeecccccccccchhh
Confidence 4555666777776688888888 999999999999999999999999999995 45545444433 35
Q ss_pred cccceeeecCcccc
Q psy5893 478 DSIRDCFVTGKWKA 491 (1182)
Q Consensus 478 dsIr~VFQTGkw~~ 491 (1182)
..|+.+||+..+-.
T Consensus 79 R~IGvVFQD~rLL~ 92 (223)
T COG2884 79 RQIGVVFQDFRLLP 92 (223)
T ss_pred heeeeEeeeccccc
Confidence 78999999998754
No 15
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.96 E-value=4.5e-10 Score=122.26 Aligned_cols=68 Identities=22% Similarity=0.065 Sum_probs=54.8
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc------------ccccceeeecCc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII------------KDSIRDCFVTGK 488 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL------------rdsIr~VFQTGk 488 (1182)
..++..++++ +++|++++|+|||||||||||++|+|+..| ++|.+.+.+.++ +..|+++||..+
T Consensus 18 ~~~L~~v~l~--i~~Ge~vaI~GpSGSGKSTLLniig~ld~p--t~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~n 93 (226)
T COG1136 18 VEALKDVNLE--IEAGEFVAIVGPSGSGKSTLLNLLGGLDKP--TSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFN 93 (226)
T ss_pred eEecccceEE--EcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCC
Confidence 4567777777 999999999999999999999999999995 455555544322 367999999998
Q ss_pred cccc
Q psy5893 489 WKAS 492 (1182)
Q Consensus 489 w~~~ 492 (1182)
+-..
T Consensus 94 Ll~~ 97 (226)
T COG1136 94 LLPD 97 (226)
T ss_pred CCCC
Confidence 8654
No 16
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.87 E-value=1.6e-09 Score=121.12 Aligned_cols=70 Identities=19% Similarity=0.074 Sum_probs=56.0
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccc-----------ccccccceeeecCcc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTL-----------IIKDSIRDCFVTGKW 489 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdge-----------ELrdsIr~VFQTGkw 489 (1182)
..++.+|++. |++|+++||||.||||||||||||++|..| .+|.+.+++. ..+..|+++||..++
T Consensus 19 ~~al~~vsL~--I~~GeI~GIIG~SGAGKSTLiR~iN~Le~P--tsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnL 94 (339)
T COG1135 19 VTALDDVSLE--IPKGEIFGIIGYSGAGKSTLLRLINLLERP--TSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNL 94 (339)
T ss_pred eeeeccceEE--EcCCcEEEEEcCCCCcHHHHHHHHhccCCC--CCceEEEcCEecccCChHHHHHHHhhccEEeccccc
Confidence 3456666666 999999999999999999999999999995 4555555543 335789999999998
Q ss_pred cccch
Q psy5893 490 KASED 494 (1182)
Q Consensus 490 ~~~~~ 494 (1182)
..+..
T Consensus 95 LssrT 99 (339)
T COG1135 95 LSSRT 99 (339)
T ss_pred cccch
Confidence 76543
No 17
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.86 E-value=1.7e-09 Score=119.91 Aligned_cols=69 Identities=17% Similarity=0.127 Sum_probs=54.2
Q ss_pred eeecccccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcc--------cccccccceeee
Q psy5893 414 KEDIQAKKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVT--------LIIKDSIRDCFV 485 (1182)
Q Consensus 414 ~~~~~~~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdg--------eELrdsIr~VFQ 485 (1182)
...|. ++..+..++++ +++|++++|||||||||||||++|+|+++| .+|.+.+++ .++...|+++.|
T Consensus 9 s~~y~-~~~il~~ls~~--i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p--~~G~V~l~g~~i~~~~~kelAk~ia~vpQ 83 (258)
T COG1120 9 SFGYG-GKPILDDLSFS--IPKGEITGILGPNGSGKSTLLKCLAGLLKP--KSGEVLLDGKDIASLSPKELAKKLAYVPQ 83 (258)
T ss_pred EEEEC-CeeEEecceEE--ecCCcEEEEECCCCCCHHHHHHHHhccCCC--CCCEEEECCCchhhcCHHHHhhhEEEecc
Confidence 33443 45677788888 999999999999999999999999999995 445454444 456678999988
Q ss_pred cC
Q psy5893 486 TG 487 (1182)
Q Consensus 486 TG 487 (1182)
..
T Consensus 84 ~~ 85 (258)
T COG1120 84 SP 85 (258)
T ss_pred CC
Confidence 85
No 18
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.86 E-value=1.3e-09 Score=118.97 Aligned_cols=73 Identities=16% Similarity=0.088 Sum_probs=54.8
Q ss_pred eceeeeecccccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCc--------ccccccccc
Q psy5893 410 KFRRKEDIQAKKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPV--------TLIIKDSIR 481 (1182)
Q Consensus 410 ~~~~~~~~~~~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wd--------geELrdsIr 481 (1182)
+-+++..+. .+.++..++++ ++.|++++|||||||||||+|+||++|+.|+ +|.+.++ ..+++..|+
T Consensus 4 ~~nvsk~y~-~~~av~~v~l~--I~~gef~vliGpSGsGKTTtLkMINrLiept--~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 4 FENVSKRYG-NKKAVDDVNLT--IEEGEFLVLIGPSGSGKTTTLKMINRLIEPT--SGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred eeeeehhcC-CceeeeeeeEE--ecCCeEEEEECCCCCcHHHHHHHHhcccCCC--CceEEECCeecccCCHHHHHHhhh
Confidence 334444444 45667777777 9999999999999999999999999999954 4444444 445667888
Q ss_pred eeeecC
Q psy5893 482 DCFVTG 487 (1182)
Q Consensus 482 ~VFQTG 487 (1182)
++-|.-
T Consensus 79 YviQqi 84 (309)
T COG1125 79 YVIQQI 84 (309)
T ss_pred hhhhhc
Confidence 887764
No 19
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.84 E-value=1.9e-09 Score=115.21 Aligned_cols=69 Identities=25% Similarity=0.285 Sum_probs=56.6
Q ss_pred ccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCc---ccccCcc----------cccccccceeeec
Q psy5893 420 KKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLS---VIKGPVT----------LIIKDSIRDCFVT 486 (1182)
Q Consensus 420 ~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~S---Gii~wdg----------eELrdsIr~VFQT 486 (1182)
.++++.++++. ++++.++|||||||||||||||+|+++....++. |.+.+.+ .+++..++++||.
T Consensus 19 ~~~aL~~i~l~--i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQk 96 (253)
T COG1117 19 DKHALKDINLD--IPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQK 96 (253)
T ss_pred chhhhccCcee--ccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccC
Confidence 56788888888 9999999999999999999999999999876643 4444433 3557889999999
Q ss_pred Cccc
Q psy5893 487 GKWK 490 (1182)
Q Consensus 487 Gkw~ 490 (1182)
.+=+
T Consensus 97 PnPF 100 (253)
T COG1117 97 PNPF 100 (253)
T ss_pred CCCC
Confidence 8655
No 20
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.82 E-value=3.4e-09 Score=115.18 Aligned_cols=68 Identities=22% Similarity=0.181 Sum_probs=55.0
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccc-----------ccccccceeeecCcc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTL-----------IIKDSIRDCFVTGKW 489 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdge-----------ELrdsIr~VFQTGkw 489 (1182)
+..+..+|++ +++|++++|+||||||||||||+|.|+++|+.| .+.+.+. +++.+++++||.|.+
T Consensus 21 ~~Ild~v~l~--V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~G--eI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gAL 96 (263)
T COG1127 21 RVILDGVDLD--VPRGEILAILGGSGSGKSTLLRLILGLLRPDKG--EILIDGEDIPQLSEEELYEIRKRMGVLFQQGAL 96 (263)
T ss_pred EEEecCceee--ecCCcEEEEECCCCcCHHHHHHHHhccCCCCCC--eEEEcCcchhccCHHHHHHHHhheeEEeecccc
Confidence 3456777777 999999999999999999999999999996544 4444333 345789999999998
Q ss_pred ccc
Q psy5893 490 KAS 492 (1182)
Q Consensus 490 ~~~ 492 (1182)
+.+
T Consensus 97 Fss 99 (263)
T COG1127 97 FSS 99 (263)
T ss_pred ccc
Confidence 864
No 21
>KOG0672|consensus
Probab=98.77 E-value=1.2e-09 Score=113.30 Aligned_cols=94 Identities=18% Similarity=0.222 Sum_probs=79.9
Q ss_pred CCCCcccchhccchhhhhhhhhhcccccccCCCCCCcccccccccccceEEecccCccccchhhhhhhheeeeeccCCCC
Q psy5893 7 GPYSVGCAKISRNSLCINIWNWFTKRVYPVCTAPNNEGIHRQEFEIEPITFIECNNDINSMIDISKVADLVLLLIDASFG 86 (1182)
Q Consensus 7 gp~s~~~~~~~~n~l~~~l~~~~tr~l~Pv~~~~~n~~~~~~~~~~k~lt~i~c~~~~~~mi~i~k~ak~vlil~d~~~G 86 (1182)
-|+|+||+++++||||+||+++.-|-|.| + ++|.++++||+. |+.+++|.+++..+....+|
T Consensus 109 APLsANTlaKiA~GlCDNLLTsviRAW~~-s---------------kPil~aPaMnT~--mw~np~T~~hl~~l~~~~~~ 170 (218)
T KOG0672|consen 109 APLSANTLAKIANGLCDNLLTSVIRAWDP-S---------------KPILLAPAMNTL--MWNNPMTKKHLTSLKEEYPG 170 (218)
T ss_pred cccCcchHHHHHhhhhhHHHHHHHHHhcc-C---------------CceEeccchhhh--hhcCcchHHHHHHHHHhcCC
Confidence 69999999999999999999999999999 2 789999999998 99999999999888876666
Q ss_pred cceeEEEEeeeccccCCCccccceeecccccccc
Q psy5893 87 FEMEIFEFLNICQVHGESTEKSMMEIDGIHGAMS 120 (1182)
Q Consensus 87 ~~me~~eflni~qv~Gds~~g~mve~dgi~~v~~ 120 (1182)
+ ..+.++...-++|+.++|+|.+|..|++.+.
T Consensus 171 ~--~~i~pieK~licGDiGlG~Mae~~~IV~~V~ 202 (218)
T KOG0672|consen 171 I--TVIKPIEKVLICGDIGLGGMAEWGTIVSKVR 202 (218)
T ss_pred c--EEecchheeEeccccCccccccHHHHHHHHH
Confidence 3 3444444444778888999999999887654
No 22
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.72 E-value=9.1e-09 Score=109.96 Aligned_cols=62 Identities=18% Similarity=0.054 Sum_probs=50.6
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc-----ccccceeeecC
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII-----KDSIRDCFVTG 487 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL-----rdsIr~VFQTG 487 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++..+ ...++++||..
T Consensus 14 ~~l~~v~~~--i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~i~~~~q~~ 80 (205)
T cd03226 14 EILDDLSLD--LYAGEIIALTGKNGAGKTTLAKILAGLIKE--SSGSILLNGKPIKAKERRKSIGYVMQDV 80 (205)
T ss_pred ceeeeeeEE--EcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEhhhHHhhcceEEEecCh
Confidence 466777777 999999999999999999999999999984 566666666543 34688899984
No 23
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=98.72 E-value=7.7e-09 Score=108.25 Aligned_cols=63 Identities=27% Similarity=0.222 Sum_probs=53.6
Q ss_pred ccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccccc------cccceeeecCccccc
Q psy5893 426 QVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIK------DSIRDCFVTGKWKAS 492 (1182)
Q Consensus 426 ~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeELr------dsIr~VFQTGkw~~~ 492 (1182)
..|++ +++|+++||+|||||||||||++|+|+.. |.+|.+.+++.+.. +-++++||.-++++-
T Consensus 17 ~fdl~--v~~ge~vAi~GpSGaGKSTLLnLIAGF~~--P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaH 85 (231)
T COG3840 17 RFDLT--VPAGEIVAILGPSGAGKSTLLNLIAGFET--PASGEILINGVDHTASPPAERPVSMLFQENNLFAH 85 (231)
T ss_pred EEEEe--ecCCcEEEEECCCCccHHHHHHHHHhccC--CCCceEEEcCeecCcCCcccCChhhhhhccccchh
Confidence 34555 99999999999999999999999999999 67777887777664 468999999998853
No 24
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.72 E-value=9e-09 Score=113.81 Aligned_cols=73 Identities=14% Similarity=0.097 Sum_probs=55.0
Q ss_pred eeeecccccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc-----ccccceeeecC
Q psy5893 413 RKEDIQAKKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII-----KDSIRDCFVTG 487 (1182)
Q Consensus 413 ~~~~~~~~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL-----rdsIr~VFQTG 487 (1182)
+...|... .++.+++++ +++|++++|||||||||||||++|+|++.| .+|.+.+.+... ..+|+++.|..
T Consensus 10 l~v~y~~~-~vl~~i~l~--v~~G~~~~iiGPNGaGKSTLlK~iLGll~p--~~G~i~~~g~~~~~~~~~~~IgYVPQ~~ 84 (254)
T COG1121 10 LTVSYGNR-PVLEDISLS--VEKGEITALIGPNGAGKSTLLKAILGLLKP--SSGEIKIFGKPVRKRRKRLRIGYVPQKS 84 (254)
T ss_pred eEEEECCE-eeeeccEEE--EcCCcEEEEECCCCCCHHHHHHHHhCCCcC--CcceEEEccccccccccCCeEEEcCccc
Confidence 34444433 478888888 999999999999999999999999999995 455555544322 35799999954
Q ss_pred --ccc
Q psy5893 488 --KWK 490 (1182)
Q Consensus 488 --kw~ 490 (1182)
+|.
T Consensus 85 ~~d~~ 89 (254)
T COG1121 85 SVDRS 89 (254)
T ss_pred ccCCC
Confidence 553
No 25
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.71 E-value=1.1e-08 Score=111.65 Aligned_cols=62 Identities=23% Similarity=0.105 Sum_probs=52.8
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccc---------cccccceeeecC
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLI---------IKDSIRDCFVTG 487 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeE---------LrdsIr~VFQTG 487 (1182)
++++.|+++ +.+|+++||||+||||||||+|+|+|+.. |..|.+.+++.. ....+.++||+.
T Consensus 21 ~~l~~VS~~--i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~--p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp 91 (252)
T COG1124 21 HALNNVSLE--IERGETLGIVGESGSGKSTLARLLAGLEK--PSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDP 91 (252)
T ss_pred hhhcceeEE--ecCCCEEEEEcCCCCCHHHHHHHHhcccC--CCCceEEECCcccCccccchhhccceeEEecCC
Confidence 577888888 99999999999999999999999999999 456777777643 356789999995
No 26
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=98.69 E-value=1.3e-08 Score=117.78 Aligned_cols=66 Identities=23% Similarity=0.159 Sum_probs=53.3
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc-----------ccccceeeecCccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII-----------KDSIRDCFVTGKWK 490 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL-----------rdsIr~VFQTGkw~ 490 (1182)
.++.+++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++.++ +..|+++||...+.
T Consensus 19 ~~L~~vsl~--i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p--~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~ 94 (343)
T TIGR02314 19 QALNNVSLH--VPAGQIYGVIGASGAGKSTLIRCVNLLERP--TSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLL 94 (343)
T ss_pred EEEeeeEEE--EcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEECCcCCHHHHHHHhcCEEEEECCcccc
Confidence 567777777 999999999999999999999999999995 455565555432 45799999997665
Q ss_pred c
Q psy5893 491 A 491 (1182)
Q Consensus 491 ~ 491 (1182)
.
T Consensus 95 ~ 95 (343)
T TIGR02314 95 S 95 (343)
T ss_pred c
Confidence 3
No 27
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.69 E-value=1.5e-08 Score=109.32 Aligned_cols=66 Identities=17% Similarity=0.111 Sum_probs=51.8
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc-------ccccceeeecCccc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII-------KDSIRDCFVTGKWK 490 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL-------rdsIr~VFQTGkw~ 490 (1182)
+..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++..+ ...++++||...+.
T Consensus 15 ~~il~~is~~--i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~ 87 (220)
T cd03263 15 KPAVDDLSLN--VYKGEIFGLLGHNGAGKTTTLKMLTGELRP--TSGTAYINGYSIRTDRKAARQSLGYCPQFDALF 87 (220)
T ss_pred ceeecceEEE--EcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEecccchHHHhhhEEEecCcCCcc
Confidence 3467777777 999999999999999999999999999985 456566655433 34578888876554
No 28
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.69 E-value=1.3e-08 Score=118.32 Aligned_cols=67 Identities=19% Similarity=0.120 Sum_probs=54.1
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc------ccccceeeecCcccc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII------KDSIRDCFVTGKWKA 491 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL------rdsIr~VFQTGkw~~ 491 (1182)
+..+..++++ +.+|++++|+|||||||||||++|+|+.+| .+|.+.+++..+ ...|+++||+..++.
T Consensus 17 ~~~l~~vsl~--i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p--~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp 89 (356)
T PRK11650 17 TQVIKGIDLD--VADGEFIVLVGPSGCGKSTLLRMVAGLERI--TSGEIWIGGRVVNELEPADRDIAMVFQNYALYP 89 (356)
T ss_pred CEEEeeeeEE--EcCCCEEEEECCCCCcHHHHHHHHHCCCCC--CceEEEECCEECCCCCHHHCCEEEEeCCccccC
Confidence 3466777777 999999999999999999999999999994 556666665543 357999999987664
No 29
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.69 E-value=1.6e-08 Score=114.69 Aligned_cols=68 Identities=18% Similarity=0.139 Sum_probs=55.4
Q ss_pred ccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccc-------ccccccceeeecCcccc
Q psy5893 420 KKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTL-------IIKDSIRDCFVTGKWKA 491 (1182)
Q Consensus 420 ~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdge-------ELrdsIr~VFQTGkw~~ 491 (1182)
++.++..++++ +++|+++||+|||||||||||++|+|++.| .+|.+.+.+. .++..+++++|......
T Consensus 17 ~~~~l~~vs~~--i~~Gei~gllG~NGAGKTTllk~l~gl~~p--~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~ 91 (293)
T COG1131 17 DKTALDGVSFE--VEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYP 91 (293)
T ss_pred CCEEEeceeEE--EcCCeEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEEcCEeCccCHHHHHhheEEEccCCCCCc
Confidence 35678888888 999999999999999999999999999995 5555555553 44568999999976543
No 30
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.68 E-value=1.3e-08 Score=113.95 Aligned_cols=66 Identities=20% Similarity=0.097 Sum_probs=52.1
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccc---cc------ccccceeeecCcccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTL---II------KDSIRDCFVTGKWKA 491 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdge---EL------rdsIr~VFQTGkw~~ 491 (1182)
.++.++++ .|+.|+++||+||||||||||||+|+||.. |..|.+.++++ +. ...|+.+||...++.
T Consensus 16 ~a~~di~l--~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~--p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~ 90 (345)
T COG1118 16 GALDDISL--DIKSGELVALLGPSGAGKSTLLRIIAGLET--PDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFP 90 (345)
T ss_pred ccccccee--eecCCcEEEEECCCCCcHHHHHHHHhCcCC--CCCceEEECCEeccchhccchhhcceeEEEechhhcc
Confidence 34444444 499999999999999999999999999999 55666666665 22 257999999987763
No 31
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.67 E-value=1.4e-08 Score=107.24 Aligned_cols=62 Identities=18% Similarity=0.074 Sum_probs=48.4
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc----------ccccceeeecC
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII----------KDSIRDCFVTG 487 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL----------rdsIr~VFQTG 487 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++.++ ...++++||..
T Consensus 6 ~il~~vsl~--i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 77 (190)
T TIGR01166 6 EVLKGLNFA--AERGEVLALLGANGAGKSTLLLHLNGLLRP--QSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDP 77 (190)
T ss_pred ceecceeEE--EcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceeEEECCEEccccccchHHHHhhEEEEecCh
Confidence 456677777 999999999999999999999999999985 455555554332 34578888875
No 32
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.67 E-value=1.7e-08 Score=108.54 Aligned_cols=65 Identities=14% Similarity=0.054 Sum_probs=51.2
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc-----------ccccceeeecCccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII-----------KDSIRDCFVTGKWK 490 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL-----------rdsIr~VFQTGkw~ 490 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++..+ +..++++||...+.
T Consensus 17 ~il~~isl~--i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 92 (216)
T TIGR00960 17 PALDNLNFH--ITKGEMVFLVGHSGAGKSTFLKLILGIEKP--TRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLL 92 (216)
T ss_pred eEEEeeEEE--EcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEehhhcChhHHHHHHHhceEEecCcccc
Confidence 356677777 999999999999999999999999999985 456666655432 34688899886544
No 33
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.66 E-value=2e-08 Score=108.09 Aligned_cols=65 Identities=25% Similarity=0.090 Sum_probs=50.6
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc------------ccccceeeecCcc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII------------KDSIRDCFVTGKW 489 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL------------rdsIr~VFQTGkw 489 (1182)
..+..++++ +++|++++|+|||||||||||++|+|+++| .+|.+.+++..+ ...++++||...+
T Consensus 18 ~il~~~s~~--i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 93 (218)
T cd03255 18 QALKGVSLS--IEKGEFVAIVGPSGSGKSTLLNILGGLDRP--TSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNL 93 (218)
T ss_pred eEEeeeEEE--EcCCCEEEEEcCCCCCHHHHHHHHhCCcCC--CceeEEECCEehhhcchhHHHHHHhhcEEEEeecccc
Confidence 456777777 999999999999999999999999999985 455555554432 2458888888655
Q ss_pred c
Q psy5893 490 K 490 (1182)
Q Consensus 490 ~ 490 (1182)
.
T Consensus 94 ~ 94 (218)
T cd03255 94 L 94 (218)
T ss_pred C
Confidence 4
No 34
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=98.64 E-value=2.3e-08 Score=109.44 Aligned_cols=65 Identities=23% Similarity=0.272 Sum_probs=50.3
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccc-----------cccccceeeecCccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLI-----------IKDSIRDCFVTGKWK 490 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeE-----------LrdsIr~VFQTGkw~ 490 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++|+ +|.+.+++.. ++..++++||...+.
T Consensus 16 ~il~~vs~~--i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 91 (243)
T TIGR02315 16 QALKNINLN--INPGEFVAIIGPSGAGKSTLLRCINRLVEPS--SGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLI 91 (243)
T ss_pred ceeecceEE--EcCCCEEEEECCCCCCHHHHHHHHhCCcCCC--ccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccc
Confidence 466777777 9999999999999999999999999999854 4555555433 234588888886544
No 35
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.64 E-value=5.9e-09 Score=113.65 Aligned_cols=69 Identities=20% Similarity=0.155 Sum_probs=55.8
Q ss_pred ccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc---------ccccceeeecCccc
Q psy5893 420 KKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII---------KDSIRDCFVTGKWK 490 (1182)
Q Consensus 420 ~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL---------rdsIr~VFQTGkw~ 490 (1182)
+-.++++|+++ +++|++++||||||||||||+++|+|++.| .+|.+.+.++++ +..|...||....+
T Consensus 16 Gl~Al~~Vsl~--v~~Gei~~LIGPNGAGKTTlfNlitG~~~P--~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF 91 (250)
T COG0411 16 GLTAVNDVSLE--VRPGEIVGLIGPNGAGKTTLFNLITGFYKP--SSGTVIFRGRDITGLPPHRIARLGIARTFQITRLF 91 (250)
T ss_pred CEEEEeceeEE--EcCCeEEEEECCCCCCceeeeeeecccccC--CCceEEECCcccCCCCHHHHHhccceeeccccccc
Confidence 34577888888 999999999999999999999999999995 555555555543 34688899998887
Q ss_pred cc
Q psy5893 491 AS 492 (1182)
Q Consensus 491 ~~ 492 (1182)
.+
T Consensus 92 ~~ 93 (250)
T COG0411 92 PG 93 (250)
T ss_pred CC
Confidence 54
No 36
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.64 E-value=2.6e-08 Score=106.92 Aligned_cols=65 Identities=17% Similarity=0.127 Sum_probs=49.9
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc-----------ccccceeeecCccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII-----------KDSIRDCFVTGKWK 490 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL-----------rdsIr~VFQTGkw~ 490 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++|+ +|.+.+++..+ ...++++||.....
T Consensus 16 ~il~~is~~--i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~--~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (214)
T TIGR02673 16 AALHDVSLH--IRKGEFLFLTGPSGAGKTTLLKLLYGALTPS--RGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLL 91 (214)
T ss_pred eeecceeEE--EcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEEcccCCHHHHHHHHhheEEEecChhhc
Confidence 456677777 9999999999999999999999999999854 55555555432 34678888875443
No 37
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.64 E-value=2.5e-08 Score=107.09 Aligned_cols=64 Identities=20% Similarity=0.126 Sum_probs=50.0
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc------ccccceeeecCcc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII------KDSIRDCFVTGKW 489 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL------rdsIr~VFQTGkw 489 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++..+ ...++++||....
T Consensus 14 ~il~~vs~~--i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~ 83 (213)
T cd03259 14 RALDDLSLT--VEPGEFLALLGPSGCGKTTLLRLIAGLERP--DSGEILIDGRDVTGVPPERRNIGMVFQDYAL 83 (213)
T ss_pred eeecceeEE--EcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEcCcCchhhccEEEEcCchhh
Confidence 456667776 999999999999999999999999999984 456566655443 2457888887543
No 38
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.63 E-value=2.9e-08 Score=120.79 Aligned_cols=87 Identities=18% Similarity=0.078 Sum_probs=66.8
Q ss_pred eceeeeecccccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccc-------ccccccce
Q psy5893 410 KFRRKEDIQAKKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTL-------IIKDSIRD 482 (1182)
Q Consensus 410 ~~~~~~~~~~~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdge-------ELrdsIr~ 482 (1182)
+-++...|...+..+.+++++ +++|+.++||||||||||||+++|+|+++| .+|.+.+++. .++..|++
T Consensus 337 ~~~vsf~Y~~~~~vL~~isl~--i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p--~~G~I~i~g~~i~~~~~~lr~~i~~ 412 (529)
T TIGR02868 337 LRDLSFGYPGSPPVLDGVSLD--LPPGERVAILGPSGSGKSTLLMLLTGLLDP--LQGEVTLDGVSVSSLQDELRRRISV 412 (529)
T ss_pred EEEEEEecCCCCceeecceEE--EcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEhhhHHHHHHhheEE
Confidence 445555554434567777777 999999999999999999999999999995 4555555554 44578999
Q ss_pred eeecCcccccchHHHhhh
Q psy5893 483 CFVTGKWKASEDASELLR 500 (1182)
Q Consensus 483 VFQTGkw~~~~~~~~ll~ 500 (1182)
++|+..++.+.-.++|.-
T Consensus 413 V~Q~~~lF~~TI~eNI~~ 430 (529)
T TIGR02868 413 FAQDAHLFDTTVRDNLRL 430 (529)
T ss_pred EccCcccccccHHHHHhc
Confidence 999999887766666543
No 39
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.63 E-value=2.8e-08 Score=107.40 Aligned_cols=65 Identities=18% Similarity=0.117 Sum_probs=50.4
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc-------ccccceeeecCccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII-------KDSIRDCFVTGKWK 490 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL-------rdsIr~VFQTGkw~ 490 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++..+ ...++++||...+.
T Consensus 14 ~il~~vs~~--i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~ 85 (220)
T cd03265 14 EAVRGVSFR--VRRGEIFGLLGPNGAGKTTTIKMLTTLLKP--TSGRATVAGHDVVREPREVRRRIGIVFQDLSVD 85 (220)
T ss_pred EeeeceeEE--ECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEecCcChHHHhhcEEEecCCcccc
Confidence 456677777 999999999999999999999999999985 455555555432 34678888886544
No 40
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.63 E-value=2.7e-08 Score=106.66 Aligned_cols=65 Identities=15% Similarity=0.072 Sum_probs=52.4
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc----ccccceeeecCccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII----KDSIRDCFVTGKWK 490 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL----rdsIr~VFQTGkw~ 490 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++ +.+|.+.+++..+ ...++++||...+.
T Consensus 14 ~~l~~v~~~--i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~ 82 (210)
T cd03269 14 TALDDISFS--VEKGEIFGLLGPNGAGKTTTIRMILGIIL--PDSGEVLFDGKPLDIAARNRIGYLPEERGLY 82 (210)
T ss_pred EEEeeeEEE--EcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCCchhHHHHccEEEeccCCcCC
Confidence 456677777 99999999999999999999999999998 4566677766543 45688889886554
No 41
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.63 E-value=2.8e-08 Score=106.55 Aligned_cols=65 Identities=20% Similarity=0.150 Sum_probs=50.4
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc-----------ccccceeeecCccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII-----------KDSIRDCFVTGKWK 490 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL-----------rdsIr~VFQTGkw~ 490 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++..+ +..++++||.....
T Consensus 15 ~~l~~~sl~--i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 90 (214)
T cd03292 15 AALDGINIS--ISAGEFVFLVGPSGAGKSTLLKLIYKEELP--TSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLL 90 (214)
T ss_pred eeeeeeEEE--EcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcccCCHHHHHHHHHheEEEecCchhc
Confidence 466777777 999999999999999999999999999985 455565555432 34578888876544
No 42
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.62 E-value=1.9e-08 Score=108.06 Aligned_cols=64 Identities=20% Similarity=0.180 Sum_probs=51.7
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc---ccccceeeecCcc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII---KDSIRDCFVTGKW 489 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL---rdsIr~VFQTGkw 489 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++..+ +..++++||...+
T Consensus 13 ~~l~~isl~--i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~~~~~i~~v~q~~~~ 79 (213)
T cd03235 13 PVLEDVSFE--VKPGEFLAIVGPNGAGKSTLLKAILGLLKP--TSGSIRVFGKPLEKERKRIGYVPQRRSI 79 (213)
T ss_pred EeeecceeE--EcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCccHHHHHhheEEecccccc
Confidence 356677777 999999999999999999999999999984 566677766543 4568899987643
No 43
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.62 E-value=2.7e-08 Score=112.29 Aligned_cols=62 Identities=19% Similarity=0.166 Sum_probs=50.6
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccc------------cccccceeeecC
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLI------------IKDSIRDCFVTG 487 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeE------------LrdsIr~VFQTG 487 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| ..|.+.+++.. ++..|+++||..
T Consensus 21 ~~l~~vsl~--i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~ 94 (286)
T PRK13646 21 QAIHDVNTE--FEQGKYYAIVGQTGSGKSTLIQNINALLKP--TTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFP 94 (286)
T ss_pred CceeeeEEE--EcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEECccccccchHHHHHhheEEEecCh
Confidence 477888888 999999999999999999999999999995 45555555543 345689999974
No 44
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.62 E-value=1.7e-08 Score=104.43 Aligned_cols=66 Identities=18% Similarity=0.176 Sum_probs=54.2
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccc--------cccccceeeecCcccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLI--------IKDSIRDCFVTGKWKA 491 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeE--------LrdsIr~VFQTGkw~~ 491 (1182)
..++.++++ +.+|++++|.|||||||||||++++-|++ |.+|...|.++. ++..+++|.|+..++.
T Consensus 17 ~il~~isl~--v~~Ge~iaitGPSG~GKStllk~va~Lis--p~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg 90 (223)
T COG4619 17 KILNNISLS--VRAGEFIAITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFG 90 (223)
T ss_pred eeecceeee--ecCCceEEEeCCCCccHHHHHHHHHhccC--CCCceEEEcCccccccChHHHHHHHHHHHcCccccc
Confidence 445666666 99999999999999999999999999999 556667776654 4578999999987764
No 45
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.62 E-value=2.7e-08 Score=111.62 Aligned_cols=62 Identities=18% Similarity=0.161 Sum_probs=50.2
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc--------ccccceeeecC
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII--------KDSIRDCFVTG 487 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL--------rdsIr~VFQTG 487 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++..+ ...|+++||..
T Consensus 19 ~~l~~isl~--i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~ 88 (274)
T PRK13647 19 KALKGLSLS--IPEGSKTALLGPNGAGKSTLLLHLNGIYLP--QRGRVKVMGREVNAENEKWVRSKVGLVFQDP 88 (274)
T ss_pred eeeeeEEEE--EcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CceEEEECCEECCCCCHHHHHhhEEEEecCh
Confidence 467777777 999999999999999999999999999984 556666655433 34688999974
No 46
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=98.62 E-value=3.5e-08 Score=106.77 Aligned_cols=62 Identities=21% Similarity=0.112 Sum_probs=48.2
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccc-----------cccccceeeecC
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLI-----------IKDSIRDCFVTG 487 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeE-----------LrdsIr~VFQTG 487 (1182)
..+..++++ +++|++++|+|||||||||||++|+|+++|+ +|.+.+++.. ++..++++||..
T Consensus 19 ~~l~~vs~~--i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~ 91 (228)
T cd03257 19 KALDDVSFS--IKKGETLGLVGESGSGKSTLARAILGLLKPT--SGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDP 91 (228)
T ss_pred eeecCceeE--EcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEEccccchhhHHHhhccEEEEecCc
Confidence 356666666 9999999999999999999999999999854 4555554432 234688888885
No 47
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.62 E-value=2.9e-08 Score=108.32 Aligned_cols=65 Identities=22% Similarity=0.174 Sum_probs=50.3
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccc-----------cccccceeeecCccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLI-----------IKDSIRDCFVTGKWK 490 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeE-----------LrdsIr~VFQTGkw~ 490 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++.. ++..|+++||...+.
T Consensus 14 ~~l~~vs~~--i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 89 (235)
T cd03261 14 TVLKGVDLD--VRRGEILAIIGPSGSGKSTLLRLIVGLLRP--DSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALF 89 (235)
T ss_pred EEEeeeEEE--EcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccccChhhHHHHhcceEEEccCcccC
Confidence 456677776 999999999999999999999999999985 45555554432 234688888886544
No 48
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.62 E-value=3e-08 Score=106.96 Aligned_cols=66 Identities=20% Similarity=0.094 Sum_probs=50.6
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc---------ccccceeeecCcccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII---------KDSIRDCFVTGKWKA 491 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL---------rdsIr~VFQTGkw~~ 491 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++..+ ...++++||...+..
T Consensus 14 ~~l~~vs~~--i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 88 (222)
T cd03224 14 QILFGVSLT--VPEGEIVALLGRNGAGKTTLLKTIMGLLPP--RSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFP 88 (222)
T ss_pred eEeeeeeEE--EcCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcCCCCHHHHHhcCeEEeccccccCC
Confidence 456666666 999999999999999999999999999995 455555554332 245888888865543
No 49
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.62 E-value=2.7e-08 Score=115.56 Aligned_cols=66 Identities=15% Similarity=0.063 Sum_probs=53.4
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc------ccccceeeecCcccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII------KDSIRDCFVTGKWKA 491 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL------rdsIr~VFQTGkw~~ 491 (1182)
.++..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++..+ ...|+++||+..++.
T Consensus 20 ~~l~~isl~--i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp 91 (351)
T PRK11432 20 TVIDNLNLT--IKQGTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIFIDGEDVTHRSIQQRDICMVFQSYALFP 91 (351)
T ss_pred EEEeeeEEE--EcCCCEEEEECCCCCcHHHHHHHHHCCCCC--CceEEEECCEECCCCCHHHCCEEEEeCCcccCC
Confidence 456777777 999999999999999999999999999995 455566655543 357999999987664
No 50
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.62 E-value=3.3e-08 Score=105.94 Aligned_cols=65 Identities=26% Similarity=0.228 Sum_probs=49.7
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc----------ccccceeeecCccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII----------KDSIRDCFVTGKWK 490 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL----------rdsIr~VFQTGkw~ 490 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++..+ ...++++||.....
T Consensus 14 ~~l~~~s~~--i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (213)
T cd03262 14 HVLKGIDLT--VKKGEVVVIIGPSGSGKSTLLRCINLLEEP--DSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLF 88 (213)
T ss_pred EeecCceEE--ECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCccchhHHHHHhcceEEecccccC
Confidence 456667776 999999999999999999999999999985 455555555432 34577888875443
No 51
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=98.62 E-value=3e-08 Score=113.14 Aligned_cols=66 Identities=14% Similarity=0.024 Sum_probs=53.1
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccc-------cccccceeeecCccc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLI-------IKDSIRDCFVTGKWK 490 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeE-------LrdsIr~VFQTGkw~ 490 (1182)
..++..++++ +++|++++|+|||||||||||++|+|+++| .+|.+.+.+.+ .+..|+++||...+.
T Consensus 20 ~~~l~~vsl~--i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p--~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~ 92 (306)
T PRK13537 20 KLVVDGLSFH--VQRGECFGLLGPNGAGKTTTLRMLLGLTHP--DAGSISLCGEPVPSRARHARQRVGVVPQFDNLD 92 (306)
T ss_pred eEEEecceEE--EeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEecccchHHHHhcEEEEeccCcCC
Confidence 4577777777 999999999999999999999999999995 45556665543 346799999986554
No 52
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.62 E-value=3e-08 Score=107.18 Aligned_cols=65 Identities=20% Similarity=0.080 Sum_probs=51.7
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc---ccccceeeecCccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII---KDSIRDCFVTGKWK 490 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL---rdsIr~VFQTGkw~ 490 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++..+ ...++++||...+.
T Consensus 18 ~il~~vs~~--i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~i~~v~q~~~~~ 85 (220)
T cd03293 18 TALEDISLS--VEEGEFVALVGPSGCGKSTLLRIIAGLERP--TSGEVLVDGEPVTGPGPDRGYVFQQDALL 85 (220)
T ss_pred EEEeceeEE--EeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECccccCcEEEEecccccc
Confidence 456667777 999999999999999999999999999984 456666666543 45688888876544
No 53
>PRK10908 cell division protein FtsE; Provisional
Probab=98.61 E-value=3.2e-08 Score=107.11 Aligned_cols=65 Identities=17% Similarity=0.060 Sum_probs=50.3
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc-----------ccccceeeecCcc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII-----------KDSIRDCFVTGKW 489 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL-----------rdsIr~VFQTGkw 489 (1182)
+..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++..+ +..++++||....
T Consensus 15 ~~~l~~vsl~--i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~ 90 (222)
T PRK10908 15 RQALQGVTFH--MRPGEMAFLTGHSGAGKSTLLKLICGIERP--SAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHL 90 (222)
T ss_pred CeEEeeeeEE--EcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcccCChhHHHHHHhheEEEecCccc
Confidence 3456677776 999999999999999999999999999985 455565555432 3467888887543
No 54
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=98.61 E-value=2.8e-08 Score=110.95 Aligned_cols=65 Identities=20% Similarity=0.182 Sum_probs=50.5
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc-----------ccccceeeecCccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII-----------KDSIRDCFVTGKWK 490 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL-----------rdsIr~VFQTGkw~ 490 (1182)
..+..++++ +++|++++|+|||||||||||++|+|+++| .+|.+.+++..+ +..++++||.....
T Consensus 21 ~il~~vsl~--i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 96 (269)
T PRK11831 21 CIFDNISLT--VPRGKITAIMGPSGIGKTTLLRLIGGQIAP--DHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALF 96 (269)
T ss_pred EEEeeeEEE--EcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEccccChhhHHHHhhcEEEEecccccC
Confidence 456777777 999999999999999999999999999985 455555554332 34588888886544
No 55
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.61 E-value=3.5e-08 Score=107.71 Aligned_cols=65 Identities=28% Similarity=0.233 Sum_probs=50.4
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc-----------ccccceeeecCccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII-----------KDSIRDCFVTGKWK 490 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL-----------rdsIr~VFQTGkw~ 490 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++..+ ...++++||...+.
T Consensus 15 ~~l~~vs~~--i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 90 (241)
T cd03256 15 KALKDVSLS--INPGEFVALIGPSGAGKSTLLRCLNGLVEP--TSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLI 90 (241)
T ss_pred EEEecceEE--EcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CCceEEECCEeccccCHhHHHHHHhccEEEcccCccc
Confidence 456777777 999999999999999999999999999985 455555554332 34688888886554
No 56
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.61 E-value=2.3e-08 Score=113.58 Aligned_cols=65 Identities=22% Similarity=0.125 Sum_probs=51.3
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc-------ccccceeeecCccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII-------KDSIRDCFVTGKWK 490 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL-------rdsIr~VFQTGkw~ 490 (1182)
.++..++++ +++|++++|+|||||||||||++|+|+++| .+|.+.+.+..+ +..++++||...+.
T Consensus 7 ~~l~~vs~~--i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~ 78 (302)
T TIGR01188 7 KAVDGVNFK--VREGEVFGFLGPNGAGKTTTIRMLTTLLRP--TSGTARVAGYDVVREPRKVRRSIGIVPQYASVD 78 (302)
T ss_pred eEEeeeeEE--EcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcccCHHHHHhhcEEecCCCCCC
Confidence 456677776 999999999999999999999999999995 456666655433 34688899886554
No 57
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.61 E-value=3.6e-08 Score=107.95 Aligned_cols=65 Identities=20% Similarity=0.059 Sum_probs=51.1
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc------ccccceeeecCccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII------KDSIRDCFVTGKWK 490 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL------rdsIr~VFQTGkw~ 490 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++..+ ...++++||...+.
T Consensus 16 ~il~~vs~~--i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~ 86 (239)
T cd03296 16 VALDDVSLD--IPSGELVALLGPSGSGKTTLLRLIAGLERP--DSGTILFGGEDATDVPVQERNVGFVFQHYALF 86 (239)
T ss_pred EeeeeeeEE--EcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCcCCccccceEEEecCCccc
Confidence 466777777 999999999999999999999999999984 456666655432 24588888876554
No 58
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.61 E-value=3.4e-08 Score=107.73 Aligned_cols=65 Identities=18% Similarity=-0.010 Sum_probs=51.0
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccccc------------cccceeeecCcc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIK------------DSIRDCFVTGKW 489 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeELr------------dsIr~VFQTGkw 489 (1182)
..+..++++ +++|++++|+|||||||||||++|+|+++| .+|.+.+++..+. ..++++||....
T Consensus 23 ~il~~isl~--i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~ 98 (233)
T PRK11629 23 DVLHNVSFS--IGEGEMMAIVGSSGSGKSTLLHLLGGLDTP--TSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHL 98 (233)
T ss_pred eeEEeeEEE--EcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcCcCCHHHHHHHHhccEEEEecCccc
Confidence 456777777 999999999999999999999999999984 5566666654331 357888988654
Q ss_pred c
Q psy5893 490 K 490 (1182)
Q Consensus 490 ~ 490 (1182)
.
T Consensus 99 ~ 99 (233)
T PRK11629 99 L 99 (233)
T ss_pred C
Confidence 3
No 59
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.60 E-value=3.3e-08 Score=106.62 Aligned_cols=65 Identities=18% Similarity=0.019 Sum_probs=50.4
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc-----------c-cccceeeecCcc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII-----------K-DSIRDCFVTGKW 489 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL-----------r-dsIr~VFQTGkw 489 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++..+ + ..++++||....
T Consensus 19 ~~l~~isl~--i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 94 (221)
T TIGR02211 19 RVLKGVSLS--IGKGEIVAIVGSSGSGKSTLLHLLGGLDNP--TSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHL 94 (221)
T ss_pred EeEeeeEEE--EcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEhhhcCHhHHHHHHHhcEEEEeccccc
Confidence 356667766 999999999999999999999999999985 455566655432 1 458888988654
Q ss_pred c
Q psy5893 490 K 490 (1182)
Q Consensus 490 ~ 490 (1182)
.
T Consensus 95 ~ 95 (221)
T TIGR02211 95 L 95 (221)
T ss_pred C
Confidence 4
No 60
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.60 E-value=2.5e-08 Score=106.85 Aligned_cols=62 Identities=23% Similarity=0.124 Sum_probs=49.1
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc--------ccccceeeecC
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII--------KDSIRDCFVTG 487 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL--------rdsIr~VFQTG 487 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++..+ +..|+++||..
T Consensus 15 ~il~~vs~~--i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~ 84 (211)
T cd03225 15 PALDDISLT--IKKGEFVLIVGPNGSGKSTLLRLLNGLLGP--TSGEVLVDGKDLTKLSLKELRRKVGLVFQNP 84 (211)
T ss_pred eeecceEEE--EcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEEcccCCHHHHHhhceEEecCh
Confidence 456677777 999999999999999999999999999985 455555555432 35688888875
No 61
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.60 E-value=3.3e-08 Score=107.58 Aligned_cols=65 Identities=22% Similarity=0.159 Sum_probs=50.4
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc-----------ccccceeeecCccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII-----------KDSIRDCFVTGKWK 490 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL-----------rdsIr~VFQTGkw~ 490 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++..+ ...++++||.....
T Consensus 19 ~il~~~s~~--i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 94 (233)
T cd03258 19 TALKDVSLS--VPKGEIFGIIGRSGAGKSTLIRCINGLERP--TSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLL 94 (233)
T ss_pred eeeecceEE--EcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcccCCHHHHHHHHhheEEEccCcccC
Confidence 456777777 999999999999999999999999999995 455555555432 34578888876544
No 62
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.60 E-value=3.6e-08 Score=112.07 Aligned_cols=65 Identities=17% Similarity=0.073 Sum_probs=51.6
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc-------ccccceeeecCccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII-------KDSIRDCFVTGKWK 490 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL-------rdsIr~VFQTGkw~ 490 (1182)
..+..++++ +++|++++|+|||||||||||++|+|+++| .+|.+.+.+..+ +..++++||...+.
T Consensus 18 ~~l~~vsl~--i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~ 89 (303)
T TIGR01288 18 VVVNDLSFT--IARGECFGLLGPNGAGKSTIARMLLGMISP--DRGKITVLGEPVPSRARLARVAIGVVPQFDNLD 89 (303)
T ss_pred EEEcceeEE--EcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECcccHHHHhhcEEEEeccccCC
Confidence 467777777 999999999999999999999999999985 455565555432 45688999986544
No 63
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.60 E-value=3.5e-08 Score=114.79 Aligned_cols=66 Identities=17% Similarity=0.089 Sum_probs=53.2
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc------ccccceeeecCcccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII------KDSIRDCFVTGKWKA 491 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL------rdsIr~VFQTGkw~~ 491 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+.+| .+|.+.+++..+ ...++++||...++.
T Consensus 18 ~~l~~vs~~--i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p--~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp 89 (353)
T TIGR03265 18 TALKDISLS--VKKGEFVCLLGPSGCGKTTLLRIIAGLERQ--TAGTIYQGGRDITRLPPQKRDYGIVFQSYALFP 89 (353)
T ss_pred EEEEeeEEE--EcCCCEEEEECCCCCCHHHHHHHHHCCCCC--CceEEEECCEECCCCCHHHCCEEEEeCCcccCC
Confidence 456677777 999999999999999999999999999994 556666655443 356999999976664
No 64
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=98.60 E-value=4.3e-08 Score=106.54 Aligned_cols=66 Identities=17% Similarity=0.010 Sum_probs=50.3
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc---------ccccceeeecCcccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII---------KDSIRDCFVTGKWKA 491 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL---------rdsIr~VFQTGkw~~ 491 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++|+ +|.+.+++..+ ...++++||...+..
T Consensus 14 ~~l~~vs~~--i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 88 (232)
T cd03218 14 KVVNGVSLS--VKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD--SGKILLDGQDITKLPMHKRARLGIGYLPQEASIFR 88 (232)
T ss_pred EeeccceeE--ecCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCEecccCCHhHHHhccEEEecCCccccc
Confidence 466677777 9999999999999999999999999999854 45555554322 235788888865543
No 65
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.60 E-value=3.5e-08 Score=111.45 Aligned_cols=62 Identities=21% Similarity=0.099 Sum_probs=49.9
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccc----------cccccceeeecC
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLI----------IKDSIRDCFVTG 487 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeE----------LrdsIr~VFQTG 487 (1182)
.++.+++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++.. ++..|+++||..
T Consensus 21 ~~l~~vs~~--i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~ 92 (287)
T PRK13637 21 KALDNVNIE--IEDGEFVGLIGHTGSGKSTLIQHLNGLLKP--TSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYP 92 (287)
T ss_pred ceeeeeEEE--EcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CccEEEECCEECCCcCccHHHHhhceEEEecCc
Confidence 467777777 999999999999999999999999999995 45555555433 235688999974
No 66
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.60 E-value=3.5e-08 Score=114.26 Aligned_cols=66 Identities=24% Similarity=0.167 Sum_probs=52.5
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc-----------ccccceeeecCcc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII-----------KDSIRDCFVTGKW 489 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL-----------rdsIr~VFQTGkw 489 (1182)
+..+..++++ +++|++++|+|||||||||||++|+|+++| .+|.+.+++..+ +..|+++||...+
T Consensus 18 ~~il~~vsl~--i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p--~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l 93 (343)
T PRK11153 18 IHALNNVSLH--IPAGEIFGVIGASGAGKSTLIRCINLLERP--TSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNL 93 (343)
T ss_pred eEEEEeeEEE--EcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCcc
Confidence 3467777777 999999999999999999999999999985 456666655432 3568999998655
Q ss_pred c
Q psy5893 490 K 490 (1182)
Q Consensus 490 ~ 490 (1182)
.
T Consensus 94 ~ 94 (343)
T PRK11153 94 L 94 (343)
T ss_pred C
Confidence 4
No 67
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.59 E-value=3.5e-08 Score=105.57 Aligned_cols=65 Identities=12% Similarity=0.047 Sum_probs=51.2
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc------ccccceeeecCcc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII------KDSIRDCFVTGKW 489 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL------rdsIr~VFQTGkw 489 (1182)
+..+..++++ +.+|++++|+|||||||||||++|+|++++ .+|.+.+++..+ ...++++||....
T Consensus 13 ~~~l~~~~~~--i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~ 83 (208)
T cd03268 13 KRVLDDISLH--VKKGEIYGFLGPNGAGKTTTMKIILGLIKP--DSGEITFDGKSYQKNIEALRRIGALIEAPGF 83 (208)
T ss_pred eEeEeeeEEE--EcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCCcccchHHHHhhEEEecCCCcc
Confidence 3467777777 999999999999999999999999999984 556666665543 3457788887543
No 68
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.59 E-value=2.7e-08 Score=106.05 Aligned_cols=65 Identities=15% Similarity=-0.050 Sum_probs=50.5
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccc------------cccccceeeecCcc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLI------------IKDSIRDCFVTGKW 489 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeE------------LrdsIr~VFQTGkw 489 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.|.+.. ....++++||...+
T Consensus 12 ~~l~~vs~~--i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 87 (206)
T TIGR03608 12 IILDDLNLT--IEKGKMYAIIGESGSGKSTLLNIIGLLEKF--DSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFAL 87 (206)
T ss_pred EEEeceEEE--EeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEccccchhhHHHHHHhCeeEEecchhh
Confidence 456677777 999999999999999999999999999985 45556665543 13468888887654
Q ss_pred c
Q psy5893 490 K 490 (1182)
Q Consensus 490 ~ 490 (1182)
.
T Consensus 88 ~ 88 (206)
T TIGR03608 88 I 88 (206)
T ss_pred c
Confidence 3
No 69
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.59 E-value=4.3e-08 Score=108.87 Aligned_cols=65 Identities=14% Similarity=0.077 Sum_probs=50.9
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccccc---cccceeeecCccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIK---DSIRDCFVTGKWK 490 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeELr---dsIr~VFQTGkw~ 490 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++.++. ..++++||.....
T Consensus 15 ~il~~vs~~--i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~v~q~~~~~ 82 (255)
T PRK11248 15 PALEDINLT--LESGELLVVLGPSGCGKTTLLNLIAGFVPY--QHGSITLDGKPVEGPGAERGVVFQNEGLL 82 (255)
T ss_pred eeEeeeeEE--ECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECCCCCCcEEEEeCCCccC
Confidence 456677776 999999999999999999999999999984 4566666665432 3478888876543
No 70
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.59 E-value=4e-08 Score=106.56 Aligned_cols=65 Identities=20% Similarity=0.184 Sum_probs=50.4
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccc--------cccccceeeecCccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLI--------IKDSIRDCFVTGKWK 490 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeE--------LrdsIr~VFQTGkw~ 490 (1182)
..+..++++ +++|++++|+|||||||||||++|+|+++| .+|.+.+++.. ++..++++||...+.
T Consensus 17 ~~l~~isl~--i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~ 89 (229)
T cd03254 17 PVLKDINFS--IKPGETVAIVGPTGAGKTTLINLLMRFYDP--QKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLF 89 (229)
T ss_pred ccccceEEE--EcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCEeHHHcCHHHHhhhEEEecCCchhh
Confidence 366677777 999999999999999999999999999985 45556555433 235688888876443
No 71
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.59 E-value=4e-08 Score=110.32 Aligned_cols=62 Identities=23% Similarity=0.186 Sum_probs=49.5
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc--------ccccceeeecC
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII--------KDSIRDCFVTG 487 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL--------rdsIr~VFQTG 487 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++..+ ...++++||..
T Consensus 18 ~~l~~vsl~--i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~ 87 (277)
T PRK13652 18 EALNNINFI--APRNSRIAVIGPNGAGKSTLFRHFNGILKP--TSGSVLIRGEPITKENIREVRKFVGLVFQNP 87 (277)
T ss_pred ceeeEeEEE--EcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEECCcCCHHHHHhheEEEecCc
Confidence 467777777 999999999999999999999999999994 456566655433 34578888874
No 72
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=98.59 E-value=3.5e-08 Score=115.61 Aligned_cols=66 Identities=18% Similarity=0.101 Sum_probs=53.4
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc------ccccceeeecCcccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII------KDSIRDCFVTGKWKA 491 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL------rdsIr~VFQTGkw~~ 491 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++..+ ...|+++||...++.
T Consensus 28 ~~l~~vsl~--i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p--~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp 99 (375)
T PRK09452 28 EVISNLDLT--INNGEFLTLLGPSGCGKTTVLRLIAGFETP--DSGRIMLDGQDITHVPAENRHVNTVFQSYALFP 99 (375)
T ss_pred EEEeeeEEE--EeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEECCCCCHHHCCEEEEecCcccCC
Confidence 456667777 999999999999999999999999999994 556666666544 356999999986664
No 73
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.58 E-value=3.9e-08 Score=111.09 Aligned_cols=62 Identities=16% Similarity=0.143 Sum_probs=49.8
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccc------------cccccceeeecC
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLI------------IKDSIRDCFVTG 487 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeE------------LrdsIr~VFQTG 487 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++.. ++..++++||..
T Consensus 20 ~~l~~vsl~--i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~ 93 (288)
T PRK13643 20 RALFDIDLE--VKKGSYTALIGHTGSGKSTLLQHLNGLLQP--TEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFP 93 (288)
T ss_pred cceeeeEEE--EcCCCEEEEECCCCChHHHHHHHHhcCCCC--CCcEEEECCEECccccccccHHHHHhhEEEEecCc
Confidence 367777777 999999999999999999999999999995 45555555543 245688999975
No 74
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.58 E-value=4.6e-08 Score=107.72 Aligned_cols=65 Identities=22% Similarity=0.204 Sum_probs=50.8
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCC---CCcccccCccccc--------ccccceeeecCc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKT---PLSVIKGPVTLII--------KDSIRDCFVTGK 488 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~---~~SGii~wdgeEL--------rdsIr~VFQTGk 488 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|++++. +.+|.+.+++..+ +..|+++||...
T Consensus 17 ~~l~~is~~--i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~ 92 (250)
T PRK14247 17 EVLDGVNLE--IPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPN 92 (250)
T ss_pred eeeecceeE--EcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCc
Confidence 456667766 9999999999999999999999999999753 3467666665433 356888888854
No 75
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.58 E-value=4.2e-08 Score=109.64 Aligned_cols=63 Identities=16% Similarity=0.058 Sum_probs=49.7
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc----------ccccceeeecC
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII----------KDSIRDCFVTG 487 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL----------rdsIr~VFQTG 487 (1182)
+..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++..+ +..|+++||..
T Consensus 14 ~~il~~isl~--i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 86 (271)
T PRK13638 14 EPVLKGLNLD--FSLSPVTGLVGANGCGKSTLFMNLSGLLRP--QKGAVLWQGKPLDYSKRGLLALRQQVATVFQDP 86 (271)
T ss_pred cccccceEEE--EcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CccEEEECCEEcccccCCHHHHHhheEEEeeCh
Confidence 3466777777 999999999999999999999999999995 455565555432 24588888875
No 76
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.58 E-value=4.4e-08 Score=107.57 Aligned_cols=65 Identities=18% Similarity=0.135 Sum_probs=50.3
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc--------ccccceeeecCccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII--------KDSIRDCFVTGKWK 490 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL--------rdsIr~VFQTGkw~ 490 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++.++ +..++++||...+.
T Consensus 17 ~~l~~vsl~--i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~ 89 (241)
T PRK14250 17 EILKDISVK--FEGGAIYTIVGPSGAGKSTLIKLINRLIDP--TEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLF 89 (241)
T ss_pred eeeeeeeEE--EcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEhhhcChHHhhhcEEEEecCchhc
Confidence 456667777 999999999999999999999999999985 455555554332 34688888886544
No 77
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.58 E-value=5.2e-08 Score=101.36 Aligned_cols=61 Identities=18% Similarity=0.058 Sum_probs=49.1
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccccccccceeeecCcc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIKDSIRDCFVTGKW 489 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeELrdsIr~VFQTGkw 489 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|++++ .+|.+.+.+. ..+++++|...+
T Consensus 15 ~~l~~i~l~--i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~~~---~~i~~~~q~~~~ 75 (166)
T cd03223 15 VLLKDLSFE--IKPGDRLLITGPSGTGKSSLFRALAGLWPW--GSGRIGMPEG---EDLLFLPQRPYL 75 (166)
T ss_pred eeeecCeEE--ECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCC---ceEEEECCCCcc
Confidence 456666666 999999999999999999999999999984 4566666543 568888887644
No 78
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=98.58 E-value=3.7e-08 Score=107.88 Aligned_cols=65 Identities=17% Similarity=0.031 Sum_probs=50.0
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc---------ccccceeeecCccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII---------KDSIRDCFVTGKWK 490 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL---------rdsIr~VFQTGkw~ 490 (1182)
..+..++++ +++|++++|+|||||||||||++|+|+++| .+|.+.+++..+ +..++++||.....
T Consensus 17 ~~l~~~sl~--i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~ 90 (241)
T PRK10895 17 RVVEDVSLT--VNSGEIVGLLGPNGAGKTTTFYMVVGIVPR--DAGNIIIDDEDISLLPLHARARRGIGYLPQEASIF 90 (241)
T ss_pred EEEeeeeEE--EcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECCCCCHHHHHHhCeEEeccCCccc
Confidence 466777777 999999999999999999999999999985 455555555432 34578888875443
No 79
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=98.58 E-value=4.7e-08 Score=108.88 Aligned_cols=63 Identities=17% Similarity=0.107 Sum_probs=49.8
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc-----------ccccceeeecC
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII-----------KDSIRDCFVTG 487 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL-----------rdsIr~VFQTG 487 (1182)
+..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++..+ +..|+++||..
T Consensus 24 ~~il~~isl~--i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~ 97 (265)
T TIGR02769 24 APVLTNVSLS--IEEGETVGLLGRSGCGKSTLARLLLGLEKP--AQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDS 97 (265)
T ss_pred eEEeeCceeE--EcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEccccCHHHHHHHhhceEEEecCh
Confidence 3466777777 999999999999999999999999999984 456566655432 34588888874
No 80
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.58 E-value=4.1e-08 Score=111.00 Aligned_cols=62 Identities=23% Similarity=0.202 Sum_probs=50.8
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc------------ccccceeeecC
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII------------KDSIRDCFVTG 487 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL------------rdsIr~VFQTG 487 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++..+ +..|+++||..
T Consensus 21 ~~L~~vsl~--i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~ 94 (290)
T PRK13634 21 RALYDVNVS--IPSGSYVAIIGHTGSGKSTLLQHLNGLLQP--TSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFP 94 (290)
T ss_pred cceeeEEEE--EcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEECccccccchHHHHHhhEEEEeeCc
Confidence 477888888 999999999999999999999999999994 456666655433 34689999974
No 81
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=98.58 E-value=4.2e-08 Score=114.08 Aligned_cols=66 Identities=18% Similarity=0.127 Sum_probs=53.2
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc------ccccceeeecCcccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII------KDSIRDCFVTGKWKA 491 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL------rdsIr~VFQTGkw~~ 491 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++..+ ...|+++||...++.
T Consensus 16 ~~l~~isl~--i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p 87 (353)
T PRK10851 16 QVLNDISLD--IPSGQMVALLGPSGSGKTTLLRIIAGLEHQ--TSGHIRFHGTDVSRLHARDRKVGFVFQHYALFR 87 (353)
T ss_pred EEEEEeEEE--EcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECCCCCHHHCCEEEEecCcccCC
Confidence 466677777 999999999999999999999999999994 456666665543 246999999976653
No 82
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.58 E-value=4.5e-08 Score=109.80 Aligned_cols=62 Identities=15% Similarity=0.060 Sum_probs=48.9
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccc---------cccccceeeecC
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLI---------IKDSIRDCFVTG 487 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeE---------LrdsIr~VFQTG 487 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++|+ +|.+.+++.. +...++++||..
T Consensus 16 ~~l~~vsl~--i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~ 86 (274)
T PRK13644 16 PALENINLV--IKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ--KGKVLVSGIDTGDFSKLQGIRKLVGIVFQNP 86 (274)
T ss_pred ceeeeeEEE--EeCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CceEEECCEECCccccHHHHHhheEEEEECh
Confidence 467777877 9999999999999999999999999999854 4545444432 234588888874
No 83
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.58 E-value=4e-08 Score=109.92 Aligned_cols=64 Identities=19% Similarity=0.126 Sum_probs=50.0
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccccc-----cccceeeecCc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIK-----DSIRDCFVTGK 488 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeELr-----dsIr~VFQTGk 488 (1182)
+..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++..+. ..++++||...
T Consensus 20 ~~il~~vsl~--i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~~~i~~v~q~~~ 88 (272)
T PRK15056 20 HTALRDASFT--VPGGSIAALVGVNGSGKSTLFKALMGFVRL--ASGKISILGQPTRQALQKNLVAYVPQSEE 88 (272)
T ss_pred cEEEEeeEEE--EcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEhHHhhccceEEEeccccc
Confidence 3466777777 999999999999999999999999999984 4566666665431 34778888743
No 84
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.58 E-value=5e-08 Score=107.51 Aligned_cols=72 Identities=19% Similarity=0.125 Sum_probs=55.1
Q ss_pred eeeecccccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcc---------ccccccccee
Q psy5893 413 RKEDIQAKKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVT---------LIIKDSIRDC 483 (1182)
Q Consensus 413 ~~~~~~~~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdg---------eELrdsIr~V 483 (1182)
+...+.....++..+++. +.+|++++|+||||||||||+++|+|++.|+. |.+.+++ ..++..++++
T Consensus 9 l~~~y~~~~~~l~~v~~~--i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~--G~v~~~g~~~~~~~~~~~~~~~vG~V 84 (235)
T COG1122 9 LSFRYPGRKAALKDVSLE--IEKGERVLLIGPNGSGKSTLLKLLNGLLKPTS--GEVLVDGLDTSSEKSLLELRQKVGLV 84 (235)
T ss_pred EEEEcCCCceeeeeeEEE--ECCCCEEEEECCCCCCHHHHHHHHcCcCcCCC--CEEEECCeeccchhhHHHhhcceEEE
Confidence 334443334566777777 99999999999999999999999999999554 4444333 3467889999
Q ss_pred eecCc
Q psy5893 484 FVTGK 488 (1182)
Q Consensus 484 FQTGk 488 (1182)
||+..
T Consensus 85 fQnpd 89 (235)
T COG1122 85 FQNPD 89 (235)
T ss_pred EECcc
Confidence 99973
No 85
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.58 E-value=4.3e-08 Score=109.93 Aligned_cols=62 Identities=19% Similarity=0.121 Sum_probs=49.2
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc----------ccccceeeecC
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII----------KDSIRDCFVTG 487 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL----------rdsIr~VFQTG 487 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|++++ .+|.+.+++..+ ...|+++||..
T Consensus 16 ~~l~~vsl~--i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 87 (275)
T PRK13639 16 EALKGINFK--AEKGEMVALLGPNGAGKSTLFLHFNGILKP--TSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNP 87 (275)
T ss_pred eeeeeeEEE--EcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCEECccccchHHHHHhheEEEeeCh
Confidence 466777777 999999999999999999999999999995 455555554332 35688999984
No 86
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.58 E-value=3.3e-08 Score=115.31 Aligned_cols=66 Identities=18% Similarity=0.048 Sum_probs=52.8
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc------------ccccceeeecCcc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII------------KDSIRDCFVTGKW 489 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL------------rdsIr~VFQTGkw 489 (1182)
.++..++++ +++|++++|+|||||||||||++|+|+++| .+|.+.+++..+ +..++++||...+
T Consensus 7 ~~l~~vs~~--i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p--~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l 82 (363)
T TIGR01186 7 KGVNDADLA--IAKGEIFVIMGLSGSGKSTTVRMLNRLIEP--TAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFAL 82 (363)
T ss_pred eeEEeeEEE--EcCCCEEEEECCCCChHHHHHHHHhCCCCC--CceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcC
Confidence 456667777 999999999999999999999999999995 556566655433 4579999998766
Q ss_pred cc
Q psy5893 490 KA 491 (1182)
Q Consensus 490 ~~ 491 (1182)
+.
T Consensus 83 ~~ 84 (363)
T TIGR01186 83 FP 84 (363)
T ss_pred CC
Confidence 53
No 87
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=98.57 E-value=4.9e-08 Score=106.38 Aligned_cols=66 Identities=20% Similarity=0.119 Sum_probs=50.3
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc---------ccccceeeecCcccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII---------KDSIRDCFVTGKWKA 491 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL---------rdsIr~VFQTGkw~~ 491 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++|+ +|.+.+++..+ ...++++||...+..
T Consensus 14 ~~l~~vsl~--i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~ 88 (236)
T cd03219 14 VALDDVSFS--VRPGEIHGLIGPNGAGKTTLFNLISGFLRPT--SGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFP 88 (236)
T ss_pred EEecCceEE--ecCCcEEEEECCCCCCHHHHHHHHcCCCCCC--CceEEECCEECCCCCHHHHHhcCEEEEeccccccc
Confidence 456677777 9999999999999999999999999999854 55555544332 235788888865543
No 88
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=98.57 E-value=4.4e-08 Score=114.84 Aligned_cols=66 Identities=23% Similarity=0.112 Sum_probs=53.3
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc------ccccceeeecCcccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII------KDSIRDCFVTGKWKA 491 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL------rdsIr~VFQTGkw~~ 491 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+.+| .+|.+.+++..+ ...++++||+..++.
T Consensus 33 ~~l~~vsl~--i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp 104 (377)
T PRK11607 33 HAVDDVSLT--IYKGEIFALLGASGCGKSTLLRMLAGFEQP--TAGQIMLDGVDLSHVPPYQRPINMMFQSYALFP 104 (377)
T ss_pred EEEeeeEEE--EcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEECCCCCHHHCCEEEEeCCCccCC
Confidence 456667777 999999999999999999999999999995 456566655543 357999999987664
No 89
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.57 E-value=5.5e-08 Score=108.75 Aligned_cols=63 Identities=21% Similarity=0.128 Sum_probs=49.5
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccc--------cccccceeeecC
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLI--------IKDSIRDCFVTG 487 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeE--------LrdsIr~VFQTG 487 (1182)
+..+..++++ +.+|++++|+|||||||||||++|+|+++|+ +|.+.+++.. ++..++++||..
T Consensus 22 ~~il~~isl~--i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~--~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~ 92 (271)
T PRK13632 22 NNALKNVSFE--INEGEYVAILGHNGSGKSTISKILTGLLKPQ--SGEIKIDGITISKENLKEIRKKIGIIFQNP 92 (271)
T ss_pred ccceeeeEEE--EcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CceEEECCEecCcCCHHHHhcceEEEEeCH
Confidence 3467777777 9999999999999999999999999999854 5555554433 244688888875
No 90
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.57 E-value=3.9e-08 Score=106.90 Aligned_cols=66 Identities=17% Similarity=0.105 Sum_probs=51.7
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc--------ccccceeeecCccc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII--------KDSIRDCFVTGKWK 490 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL--------rdsIr~VFQTGkw~ 490 (1182)
+..+..++++ +++|++++|+|||||||||||++|+|+++| .+|.+.+++..+ ...++++||...+.
T Consensus 20 ~~il~~vs~~--i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~ 93 (225)
T PRK10247 20 AKILNNISFS--LRAGEFKLITGPSGCGKSTLLKIVASLISP--TSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLF 93 (225)
T ss_pred ceeeeccEEE--EcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCCeEEECCEEcCcCCHHHHHhccEEEecccccc
Confidence 3467777777 999999999999999999999999999985 455565655432 34688889886554
No 91
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=98.57 E-value=4.6e-08 Score=114.39 Aligned_cols=66 Identities=18% Similarity=0.034 Sum_probs=52.2
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc------ccccceeeecCcccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII------KDSIRDCFVTGKWKA 491 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL------rdsIr~VFQTGkw~~ 491 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++..+ ...|+++||...++.
T Consensus 17 ~vl~~vsl~--i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p--~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~ 88 (369)
T PRK11000 17 VISKDINLD--IHEGEFVVFVGPSGCGKSTLLRMIAGLEDI--TSGDLFIGEKRMNDVPPAERGVGMVFQSYALYP 88 (369)
T ss_pred EEEeeeEEE--EcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEECCCCCHhHCCEEEEeCCcccCC
Confidence 456677777 999999999999999999999999999985 455566655433 246899999876553
No 92
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=98.57 E-value=4.7e-08 Score=113.17 Aligned_cols=66 Identities=17% Similarity=0.089 Sum_probs=52.6
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccc-------cccccceeeecCccc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLI-------IKDSIRDCFVTGKWK 490 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeE-------LrdsIr~VFQTGkw~ 490 (1182)
+.++..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+.+.. .+..|+++||.....
T Consensus 54 ~~~l~~is~~--i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p--~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~ 126 (340)
T PRK13536 54 KAVVNGLSFT--VASGECFGLLGPNGAGKSTIARMILGMTSP--DAGKITVLGVPVPARARLARARIGVVPQFDNLD 126 (340)
T ss_pred EEEEeeeEEE--EcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CceEEEECCEECCcchHHHhccEEEEeCCccCC
Confidence 3577788877 999999999999999999999999999995 45555555443 345789999986543
No 93
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.57 E-value=5.4e-08 Score=104.79 Aligned_cols=66 Identities=18% Similarity=0.125 Sum_probs=50.8
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc-------ccccceeeecCcccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII-------KDSIRDCFVTGKWKA 491 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL-------rdsIr~VFQTGkw~~ 491 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++..+ +..++++||...+..
T Consensus 19 ~il~~~sl~--i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~ 91 (218)
T cd03266 19 QAVDGVSFT--VKPGEVTGLLGPNGAGKTTTLRMLAGLLEP--DAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYD 91 (218)
T ss_pred eeecceEEE--EcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CCceEEECCEEcccCHHHHHhhEEEecCCcccCc
Confidence 356666666 999999999999999999999999999985 455555554432 356888888865543
No 94
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.56 E-value=6.1e-08 Score=106.92 Aligned_cols=67 Identities=24% Similarity=0.214 Sum_probs=52.2
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCC---CCcccccCccccc----------ccccceeeecCc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKT---PLSVIKGPVTLII----------KDSIRDCFVTGK 488 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~---~~SGii~wdgeEL----------rdsIr~VFQTGk 488 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++|+ +.+|.+.+++..+ +..++++||...
T Consensus 18 ~~l~~is~~--i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 95 (253)
T PRK14267 18 HVIKGVDLK--IPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPN 95 (253)
T ss_pred eeeecceEE--EcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCc
Confidence 456667766 9999999999999999999999999999864 2467666665433 346888888865
Q ss_pred cc
Q psy5893 489 WK 490 (1182)
Q Consensus 489 w~ 490 (1182)
..
T Consensus 96 ~~ 97 (253)
T PRK14267 96 PF 97 (253)
T ss_pred cC
Confidence 54
No 95
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=98.56 E-value=4.7e-08 Score=114.05 Aligned_cols=68 Identities=15% Similarity=0.108 Sum_probs=53.9
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc------ccccceeeecCcccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII------KDSIRDCFVTGKWKA 491 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL------rdsIr~VFQTGkw~~ 491 (1182)
.++..++++ +.+|++++|+|||||||||||++|+|+++|+..+|.+.+++..+ ...|+++||...++.
T Consensus 19 ~~l~~vsl~--i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p 92 (362)
T TIGR03258 19 TVLDDLSLE--IEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFP 92 (362)
T ss_pred EEEeeeEEE--ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCC
Confidence 467777777 99999999999999999999999999999544116666665543 356899999987663
No 96
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.56 E-value=5.7e-08 Score=105.60 Aligned_cols=65 Identities=23% Similarity=0.121 Sum_probs=50.1
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc---------ccccceeeecCccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII---------KDSIRDCFVTGKWK 490 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL---------rdsIr~VFQTGkw~ 490 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++..+ ...++++||...+.
T Consensus 14 ~~l~~vs~~--i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~ 87 (230)
T TIGR03410 14 HILRGVSLE--VPKGEVTCVLGRNGVGKTTLLKTLMGLLPV--KSGSIRLDGEDITKLPPHERARAGIAYVPQGREIF 87 (230)
T ss_pred EEecceeeE--ECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEECCCCCHHHHHHhCeEEeccCCccc
Confidence 456666666 999999999999999999999999999995 455555555432 24578888876554
No 97
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.56 E-value=5.2e-08 Score=105.77 Aligned_cols=64 Identities=19% Similarity=0.051 Sum_probs=49.5
Q ss_pred cccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc------------ccccceeeecCccc
Q psy5893 423 HVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII------------KDSIRDCFVTGKWK 490 (1182)
Q Consensus 423 ~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL------------rdsIr~VFQTGkw~ 490 (1182)
.+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++..+ ...++++||...+.
T Consensus 25 ~l~~~s~~--i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~ 100 (228)
T PRK10584 25 ILTGVELV--VKRGETIALIGESGSGKSTLLAILAGLDDG--SSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLI 100 (228)
T ss_pred EEeccEEE--EcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccC
Confidence 56667777 999999999999999999999999999985 455565655432 13578888875443
No 98
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.56 E-value=5.2e-08 Score=110.02 Aligned_cols=62 Identities=19% Similarity=0.123 Sum_probs=50.4
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc------------ccccceeeecC
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII------------KDSIRDCFVTG 487 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL------------rdsIr~VFQTG 487 (1182)
.++..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++..+ +..++++||..
T Consensus 21 ~~l~~vsl~--i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~ 94 (287)
T PRK13641 21 KGLDNISFE--LEEGSFVALVGHTGSGKSTLMQHFNALLKP--SSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFP 94 (287)
T ss_pred cceeeeEEE--EeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEECccccccchHHHHHhceEEEEeCh
Confidence 467777777 999999999999999999999999999994 556666665533 24688899975
No 99
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.56 E-value=7.5e-08 Score=102.86 Aligned_cols=60 Identities=27% Similarity=0.282 Sum_probs=49.7
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccccccccceeeecCccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIKDSIRDCFVTGKWK 490 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeELrdsIr~VFQTGkw~ 490 (1182)
..+..++++ +++|++++|+|||||||||||++|+|+++| .+|.+.+++ .|+++||+..+.
T Consensus 19 ~il~~~s~~--i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~--~~G~i~~~g-----~i~~~~q~~~l~ 78 (204)
T cd03250 19 FTLKDINLE--VPKGELVAIVGPVGSGKSSLLSALLGELEK--LSGSVSVPG-----SIAYVSQEPWIQ 78 (204)
T ss_pred ceeeeeeEE--ECCCCEEEEECCCCCCHHHHHHHHhCcCCC--CCCeEEEcC-----EEEEEecCchhc
Confidence 356667777 999999999999999999999999999984 456666665 688999987654
No 100
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.56 E-value=4.4e-08 Score=102.50 Aligned_cols=64 Identities=25% Similarity=0.144 Sum_probs=53.8
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc--------ccccceeeecCcc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII--------KDSIRDCFVTGKW 489 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL--------rdsIr~VFQTGkw 489 (1182)
+++..|+|+ +..|+.+||||.||||||||.+||+|+++ |++|.+.++++.+ ...|+++||+.+-
T Consensus 27 ~AV~~vSFt--L~~~QTlaiIG~NGSGKSTLakMlaGmi~--PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnt 98 (267)
T COG4167 27 EAVKPVSFT--LREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNT 98 (267)
T ss_pred hcccceEEE--ecCCcEEEEEccCCCcHhHHHHHHhcccC--CCCceEEECCccccccchHhhhhheeeeecCCcc
Confidence 456667777 89999999999999999999999999999 5667777777654 3689999999753
No 101
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.56 E-value=4.3e-08 Score=105.04 Aligned_cols=68 Identities=16% Similarity=0.052 Sum_probs=51.0
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCC-CCcccccCcccc-------cccccceeeecCccc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKT-PLSVIKGPVTLI-------IKDSIRDCFVTGKWK 490 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~-~~SGii~wdgeE-------LrdsIr~VFQTGkw~ 490 (1182)
+..+..++++ +++|++++|+|||||||||||++|+|++++. +.+|.+.+++.. ....++++||...+.
T Consensus 20 ~~il~~~s~~--i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~ 95 (202)
T cd03233 20 IPILKDFSGV--VKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHF 95 (202)
T ss_pred ceeeeeEEEE--ECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccC
Confidence 3456677777 9999999999999999999999999999843 445555555443 234678888875433
No 102
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.56 E-value=5.7e-08 Score=109.14 Aligned_cols=78 Identities=21% Similarity=0.110 Sum_probs=55.6
Q ss_pred eceeeeecccccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCC---CCcccccCccccc---------c
Q psy5893 410 KFRRKEDIQAKKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKT---PLSVIKGPVTLII---------K 477 (1182)
Q Consensus 410 ~~~~~~~~~~~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~---~~SGii~wdgeEL---------r 477 (1182)
+..+...+. .+..+..++++ +.+|++++|+|||||||||||++|+|+++|. +.+|.+.+++..+ +
T Consensus 24 i~nl~~~~~-~~~il~~vs~~--i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~ 100 (276)
T PRK14271 24 AVNLTLGFA-GKTVLDQVSMG--FPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFR 100 (276)
T ss_pred EeeEEEEEC-CEEEeeeeEEE--EcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHh
Confidence 334444443 23456677777 9999999999999999999999999999853 3456666655432 3
Q ss_pred cccceeeecCccc
Q psy5893 478 DSIRDCFVTGKWK 490 (1182)
Q Consensus 478 dsIr~VFQTGkw~ 490 (1182)
..++++||...++
T Consensus 101 ~~i~~v~q~~~l~ 113 (276)
T PRK14271 101 RRVGMLFQRPNPF 113 (276)
T ss_pred hheEEeccCCccC
Confidence 4678888876544
No 103
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=98.56 E-value=5e-08 Score=105.80 Aligned_cols=65 Identities=23% Similarity=0.191 Sum_probs=50.6
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccC-----CCCCCcccccCccccc----------ccccceeeec
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNF-----TKTPLSVIKGPVTLII----------KDSIRDCFVT 486 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~-----~~~~~SGii~wdgeEL----------rdsIr~VFQT 486 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|++ + +.+|.+.+++..+ +..++++||.
T Consensus 14 ~~l~~vsl~--i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~ 89 (227)
T cd03260 14 HALKDISLD--IPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA--PDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQK 89 (227)
T ss_pred eeeeeeEEE--EcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC--CCCeEEEECCEEhhhcchHHHHHHhhEEEEecC
Confidence 466777777 9999999999999999999999999999 6 4456666655432 3457888887
Q ss_pred Cccc
Q psy5893 487 GKWK 490 (1182)
Q Consensus 487 Gkw~ 490 (1182)
..+.
T Consensus 90 ~~~~ 93 (227)
T cd03260 90 PNPF 93 (227)
T ss_pred chhc
Confidence 6544
No 104
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.56 E-value=5.7e-08 Score=104.22 Aligned_cols=65 Identities=15% Similarity=0.041 Sum_probs=49.6
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc------ccccceeeecCccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII------KDSIRDCFVTGKWK 490 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL------rdsIr~VFQTGkw~ 490 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++..+ ...++++||.....
T Consensus 14 ~~l~~is~~--i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~ 84 (213)
T cd03301 14 TALDDLNLD--IADGEFVVLLGPSGCGKTTTLRMIAGLEEP--TSGRIYIGGRDVTDLPPKDRDIAMVFQNYALY 84 (213)
T ss_pred eeeeceEEE--EcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCcCCcccceEEEEecChhhc
Confidence 456667766 999999999999999999999999999985 455555555432 23578888875443
No 105
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.55 E-value=5.8e-08 Score=106.49 Aligned_cols=65 Identities=15% Similarity=0.046 Sum_probs=49.8
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc--------ccccceeeecCccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII--------KDSIRDCFVTGKWK 490 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL--------rdsIr~VFQTGkw~ 490 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++|+ +|.+.+++..+ ...++++||.....
T Consensus 15 ~~l~~is~~--i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~ 87 (242)
T cd03295 15 KAVNNLNLE--IAKGEFLVLIGPSGSGKTTTMKMINRLIEPT--SGEIFIDGEDIREQDPVELRRKIGYVIQQIGLF 87 (242)
T ss_pred eEeeeeEEE--ECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CceEEECCeEcCcCChHHhhcceEEEccCcccc
Confidence 356667777 9999999999999999999999999999854 55555554432 34678888875443
No 106
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=98.55 E-value=5.8e-08 Score=107.16 Aligned_cols=65 Identities=18% Similarity=0.135 Sum_probs=49.8
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccc---------------------ccccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLI---------------------IKDSI 480 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeE---------------------LrdsI 480 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++|+ +|.+.+++.. ++..+
T Consensus 14 ~~l~~vs~~--i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i 89 (252)
T TIGR03005 14 TVLDGLNFS--VAAGEKVALIGPSGSGKSTILRILMTLEPID--EGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKI 89 (252)
T ss_pred eEEeeeeEE--EcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEEccccccccccccccchhHHHHHhhCe
Confidence 466777777 9999999999999999999999999999854 4545444432 23468
Q ss_pred ceeeecCccc
Q psy5893 481 RDCFVTGKWK 490 (1182)
Q Consensus 481 r~VFQTGkw~ 490 (1182)
+++||.....
T Consensus 90 ~~v~q~~~~~ 99 (252)
T TIGR03005 90 GMVFQSFNLF 99 (252)
T ss_pred EEEecCcccC
Confidence 8888876543
No 107
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.55 E-value=5.5e-08 Score=106.01 Aligned_cols=65 Identities=26% Similarity=0.157 Sum_probs=50.8
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc--------ccccceeeecCccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII--------KDSIRDCFVTGKWK 490 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL--------rdsIr~VFQTGkw~ 490 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|++++ .+|.+.+++..+ +..++++||...+.
T Consensus 15 ~~l~~i~~~--i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~ 87 (236)
T cd03253 15 PVLKDVSFT--IPAGKKVAIVGPSGSGKSTILRLLFRFYDV--SSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLF 87 (236)
T ss_pred ceeeeeEEE--EcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCCEEEECCEEhhhCCHHHHHhhEEEECCCChhh
Confidence 456677777 999999999999999999999999999984 455566655433 34578888886544
No 108
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=98.55 E-value=6e-08 Score=108.23 Aligned_cols=68 Identities=21% Similarity=0.160 Sum_probs=52.1
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCC---CCcccccCccccc----------ccccceeeecC
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKT---PLSVIKGPVTLII----------KDSIRDCFVTG 487 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~---~~SGii~wdgeEL----------rdsIr~VFQTG 487 (1182)
+..+..++++ +.+|++++|+|||||||||||++|+|+++|. +.+|.+.+++..+ +..|+++||..
T Consensus 33 ~~il~~vsl~--i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 110 (267)
T PRK14237 33 KEAIKGIDMQ--FEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRP 110 (267)
T ss_pred eeeEeeeEEE--EcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCC
Confidence 3567777777 9999999999999999999999999998742 3456665555432 34688899886
Q ss_pred ccc
Q psy5893 488 KWK 490 (1182)
Q Consensus 488 kw~ 490 (1182)
...
T Consensus 111 ~~~ 113 (267)
T PRK14237 111 NPF 113 (267)
T ss_pred ccc
Confidence 543
No 109
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.55 E-value=5.9e-08 Score=101.70 Aligned_cols=65 Identities=14% Similarity=0.017 Sum_probs=50.4
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc-------ccccceeeecCccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII-------KDSIRDCFVTGKWK 490 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL-------rdsIr~VFQTGkw~ 490 (1182)
..+..++++ +++|++++|+|||||||||||++|+|++++ .+|.+.+++..+ ...++++||...+.
T Consensus 16 ~~l~~i~~~--i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~ 87 (178)
T cd03247 16 QVLKNLSLE--LKQGEKIALLGRSGSGKSTLLQLLTGDLKP--QQGEITLDGVPVSDLEKALSSLISVLNQRPYLF 87 (178)
T ss_pred cceEEEEEE--EcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCCEEEECCEEHHHHHHHHHhhEEEEccCCeee
Confidence 356667777 999999999999999999999999999985 455566665432 34577888875443
No 110
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=98.55 E-value=5.7e-08 Score=110.85 Aligned_cols=47 Identities=17% Similarity=0.152 Sum_probs=39.3
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPV 472 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wd 472 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++|+ +|.+.|.
T Consensus 21 ~~l~~vsl~--i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~--~G~i~~~ 67 (305)
T PRK13651 21 KALDNVSVE--INQGEFIAIIGQTGSGKTTFIEHLNALLLPD--TGTIEWI 67 (305)
T ss_pred cceeeeEEE--EeCCCEEEEECCCCCcHHHHHHHHhCCCCCC--CcEEEEe
Confidence 367777777 9999999999999999999999999999954 4554443
No 111
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.55 E-value=7e-08 Score=106.61 Aligned_cols=67 Identities=18% Similarity=0.119 Sum_probs=51.5
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCC---CCcccccCcccc----------cccccceeeecCc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKT---PLSVIKGPVTLI----------IKDSIRDCFVTGK 488 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~---~~SGii~wdgeE----------LrdsIr~VFQTGk 488 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|++++. +.+|.+.+++.. ++..++++||...
T Consensus 21 ~il~~vs~~--i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 98 (254)
T PRK14273 21 KALNNINIK--ILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPN 98 (254)
T ss_pred eeecceeeE--EcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccc
Confidence 466777777 9999999999999999999999999999864 235666665543 2346888888854
Q ss_pred cc
Q psy5893 489 WK 490 (1182)
Q Consensus 489 w~ 490 (1182)
..
T Consensus 99 ~~ 100 (254)
T PRK14273 99 PF 100 (254)
T ss_pred cc
Confidence 43
No 112
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.54 E-value=6.6e-08 Score=106.49 Aligned_cols=67 Identities=18% Similarity=0.117 Sum_probs=51.2
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCC---CCcccccCccccc----------ccccceeeecCc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKT---PLSVIKGPVTLII----------KDSIRDCFVTGK 488 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~---~~SGii~wdgeEL----------rdsIr~VFQTGk 488 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|++++. +.+|.+.+++..+ +..++++||...
T Consensus 17 ~~l~~i~~~--i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~ 94 (250)
T PRK14262 17 KAVKNVTMK--IFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPT 94 (250)
T ss_pred eeEeeeeEe--ecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCc
Confidence 466777777 9999999999999999999999999998742 2456666655432 356888888755
Q ss_pred cc
Q psy5893 489 WK 490 (1182)
Q Consensus 489 w~ 490 (1182)
+.
T Consensus 95 ~~ 96 (250)
T PRK14262 95 PF 96 (250)
T ss_pred cC
Confidence 43
No 113
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.54 E-value=6e-08 Score=109.29 Aligned_cols=63 Identities=22% Similarity=0.122 Sum_probs=50.5
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc----------ccccceeeecC
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII----------KDSIRDCFVTG 487 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL----------rdsIr~VFQTG 487 (1182)
+..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++..+ +..++++||..
T Consensus 19 ~~~l~~vs~~--i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p--~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~ 91 (283)
T PRK13636 19 THALKGININ--IKKGEVTAILGGNGAGKSTLFQNLNGILKP--SSGRILFDGKPIDYSRKGLMKLRESVGMVFQDP 91 (283)
T ss_pred CeeeeeeEEE--EcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CccEEEECCEECCCCcchHHHHHhhEEEEecCc
Confidence 3467777777 999999999999999999999999999985 455555555432 35688999985
No 114
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.54 E-value=6.2e-08 Score=108.99 Aligned_cols=62 Identities=19% Similarity=0.108 Sum_probs=50.3
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc--------ccccceeeecC
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII--------KDSIRDCFVTG 487 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL--------rdsIr~VFQTG 487 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++..+ ...|+++||..
T Consensus 21 ~~l~~vsl~--i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p--~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~ 90 (279)
T PRK13635 21 YALKDVSFS--VYEGEWVAIVGHNGSGKSTLAKLLNGLLLP--EAGTITVGGMVLSEETVWDVRRQVGMVFQNP 90 (279)
T ss_pred cceeeeEEE--EcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEECCcCcHHHHhhheEEEEeCH
Confidence 467777777 999999999999999999999999999995 455555555433 34688999985
No 115
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=98.54 E-value=6.2e-08 Score=105.76 Aligned_cols=64 Identities=16% Similarity=0.099 Sum_probs=50.0
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc--------ccccceeeecCcc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII--------KDSIRDCFVTGKW 489 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL--------rdsIr~VFQTGkw 489 (1182)
..+..++++ +++|++++|+|||||||||||++|+|+++| .+|.+.+++..+ +..++++||....
T Consensus 16 ~~l~~isl~--i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~ 87 (237)
T cd03252 16 VILDNISLR--IKPGEVVGIVGRSGSGKSTLTKLIQRFYVP--ENGRVLVDGHDLALADPAWLRRQVGVVLQENVL 87 (237)
T ss_pred cceeceEEE--EcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCeehHhcCHHHHhhcEEEEcCCchh
Confidence 356667766 999999999999999999999999999985 455566655432 3468888888543
No 116
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=98.54 E-value=6.4e-08 Score=106.47 Aligned_cols=64 Identities=22% Similarity=0.286 Sum_probs=48.9
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccc----------------cccccceeee
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLI----------------IKDSIRDCFV 485 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeE----------------LrdsIr~VFQ 485 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++++ +|.+.+++.. ++..++++||
T Consensus 17 ~~l~~vs~~--i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q 92 (250)
T PRK11264 17 TVLHGIDLE--VKPGEVVAIIGPSGSGKTTLLRCINLLEQPE--AGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQ 92 (250)
T ss_pred eeeccceEE--EcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CeEEEECCEEccccccccchhhHHHHhhhhEEEEec
Confidence 466777777 9999999999999999999999999999854 4555544432 2346788888
Q ss_pred cCcc
Q psy5893 486 TGKW 489 (1182)
Q Consensus 486 TGkw 489 (1182)
....
T Consensus 93 ~~~~ 96 (250)
T PRK11264 93 NFNL 96 (250)
T ss_pred Cccc
Confidence 7543
No 117
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.54 E-value=6.6e-08 Score=105.97 Aligned_cols=65 Identities=17% Similarity=0.118 Sum_probs=51.0
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc--------------ccccceeeecC
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII--------------KDSIRDCFVTG 487 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL--------------rdsIr~VFQTG 487 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++..+ +..++++||..
T Consensus 16 ~il~~vsl~--i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~ 91 (242)
T PRK11124 16 QALFDITLD--CPQGETLVLLGPSGAGKSSLLRVLNLLEMP--RSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQY 91 (242)
T ss_pred eeEeeeeeE--EcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEecccccccchhhHHHHHhheEEEecCc
Confidence 467777777 999999999999999999999999999984 455566655432 34578888876
Q ss_pred ccc
Q psy5893 488 KWK 490 (1182)
Q Consensus 488 kw~ 490 (1182)
.+.
T Consensus 92 ~~~ 94 (242)
T PRK11124 92 NLW 94 (242)
T ss_pred ccc
Confidence 544
No 118
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.54 E-value=7e-08 Score=100.61 Aligned_cols=64 Identities=25% Similarity=0.191 Sum_probs=49.7
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc--------ccccceeeecCcc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII--------KDSIRDCFVTGKW 489 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL--------rdsIr~VFQTGkw 489 (1182)
..+..++++ +++|++++|+|||||||||||++|+|++++ .+|.+.|++..+ ...++++||...+
T Consensus 16 ~~l~~i~~~--i~~G~~~~l~G~nGsGKstLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~ 87 (171)
T cd03228 16 PVLKDVSLT--IKPGEKVAIVGPSGSGKSTLLKLLLRLYDP--TSGEILIDGVDLRDLDLESLRKNIAYVPQDPFL 87 (171)
T ss_pred ccccceEEE--EcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCCEEEECCEEhhhcCHHHHHhhEEEEcCCchh
Confidence 456677777 999999999999999999999999999995 456566665433 2457777877544
No 119
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=98.54 E-value=6.6e-08 Score=107.72 Aligned_cols=65 Identities=22% Similarity=0.104 Sum_probs=51.3
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc--------ccccceeeecCccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII--------KDSIRDCFVTGKWK 490 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL--------rdsIr~VFQTGkw~ 490 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|++++ .+|.+.+++..+ ...++++||...+.
T Consensus 21 ~~l~~isl~--i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~ 93 (265)
T PRK10253 21 TVAENLTVE--IPDGHFTAIIGPNGCGKSTLLRTLSRLMTP--AHGHVWLDGEHIQHYASKEVARRIGLLAQNATTP 93 (265)
T ss_pred EEeeecceE--ECCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCcEEEECCEEhhhCCHHHHhhheEEeeccCcCC
Confidence 466777777 999999999999999999999999999985 455566655433 34688999987554
No 120
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.54 E-value=6.2e-08 Score=108.68 Aligned_cols=62 Identities=18% Similarity=0.091 Sum_probs=49.1
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc------------ccccceeeecC
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII------------KDSIRDCFVTG 487 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL------------rdsIr~VFQTG 487 (1182)
..+..++++ +++|++++|+|||||||||||++|+|+++| .+|.+.+++..+ +..|+++||..
T Consensus 21 ~~l~~is~~--i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~ 94 (280)
T PRK13649 21 RALFDVNLT--IEDGSYTAFIGHTGSGKSTIMQLLNGLHVP--TQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFP 94 (280)
T ss_pred ceeeeeEEE--EcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccccccccCHHHHHhheEEEeeCh
Confidence 466777777 999999999999999999999999999985 456566655432 34588888874
No 121
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.54 E-value=7.1e-08 Score=107.46 Aligned_cols=65 Identities=29% Similarity=0.201 Sum_probs=51.5
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccc---cccccceeeecCccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLI---IKDSIRDCFVTGKWK 490 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeE---LrdsIr~VFQTGkw~ 490 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++.. +...++++||...+.
T Consensus 26 ~il~~isl~--i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p--~~G~i~~~g~~~~~~~~~i~~v~q~~~l~ 93 (257)
T PRK11247 26 TVLNQLDLH--IPAGQFVAVVGRSGCGKSTLLRLLAGLETP--SAGELLAGTAPLAEAREDTRLMFQDARLL 93 (257)
T ss_pred ceeeeeEEE--EcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEHHHhhCceEEEecCccCC
Confidence 466777777 999999999999999999999999999985 45555555543 345688999987654
No 122
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.54 E-value=7.3e-08 Score=102.84 Aligned_cols=64 Identities=13% Similarity=-0.008 Sum_probs=49.5
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc-------ccccceeeecCcc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII-------KDSIRDCFVTGKW 489 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL-------rdsIr~VFQTGkw 489 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.|++..+ +..+++++|....
T Consensus 15 ~il~~~s~~--i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~ 85 (200)
T PRK13540 15 PLLQQISFH--LPAGGLLHLKGSNGAGKTTLLKLIAGLLNP--EKGEILFERQSIKKDLCTYQKQLCFVGHRSGI 85 (200)
T ss_pred eEEeeeeEE--ECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeeEEECCCccccCHHHHHhheEEecccccc
Confidence 466777777 999999999999999999999999999985 455566655433 3456777776544
No 123
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.53 E-value=5.8e-08 Score=101.41 Aligned_cols=65 Identities=17% Similarity=0.119 Sum_probs=50.1
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccc-------cccccceeeecCccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLI-------IKDSIRDCFVTGKWK 490 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeE-------LrdsIr~VFQTGkw~ 490 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++|+ +|.+.+++.. +...++++||.....
T Consensus 14 ~~l~~~~~~--i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~--~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~ 85 (173)
T cd03230 14 TALDDISLT--VEKGEIYGLLGPNGAGKTTLIKIILGLLKPD--SGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLY 85 (173)
T ss_pred eeeeeeEEE--EcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CeEEEECCEEcccchHhhhccEEEEecCCccc
Confidence 356677777 9999999999999999999999999999854 5555554443 235678888876543
No 124
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=98.53 E-value=8e-08 Score=105.84 Aligned_cols=67 Identities=19% Similarity=0.165 Sum_probs=50.7
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCC---CcccccCccccc----------ccccceeeecCc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTP---LSVIKGPVTLII----------KDSIRDCFVTGK 488 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~---~SGii~wdgeEL----------rdsIr~VFQTGk 488 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+.++.+ .+|.+.+++..+ +..++++||...
T Consensus 17 ~~l~~vs~~--i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 94 (250)
T PRK14240 17 QALKKINLD--IEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPN 94 (250)
T ss_pred eeeecceEE--EcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCc
Confidence 466667766 99999999999999999999999999976322 356666655432 345888888754
Q ss_pred cc
Q psy5893 489 WK 490 (1182)
Q Consensus 489 w~ 490 (1182)
+.
T Consensus 95 ~~ 96 (250)
T PRK14240 95 PF 96 (250)
T ss_pred cC
Confidence 43
No 125
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.53 E-value=7.5e-08 Score=100.55 Aligned_cols=64 Identities=23% Similarity=0.168 Sum_probs=49.5
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc--------ccccceeeecCcc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII--------KDSIRDCFVTGKW 489 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL--------rdsIr~VFQTGkw 489 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++|+ +|.+.+++..+ +..++++||...+
T Consensus 16 ~~l~~~~~~--i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~--~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~ 87 (173)
T cd03246 16 PVLRNVSFS--IEPGESLAIIGPSGSGKSTLARLILGLLRPT--SGRVRLDGADISQWDPNELGDHVGYLPQDDEL 87 (173)
T ss_pred cceeeeEEE--ECCCCEEEEECCCCCCHHHHHHHHHhccCCC--CCeEEECCEEcccCCHHHHHhheEEECCCCcc
Confidence 356667766 9999999999999999999999999999854 55566655433 3467788887543
No 126
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.53 E-value=6.6e-08 Score=105.23 Aligned_cols=65 Identities=20% Similarity=0.062 Sum_probs=50.2
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc--------ccccceeeecCccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII--------KDSIRDCFVTGKWK 490 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL--------rdsIr~VFQTGkw~ 490 (1182)
..+..++++ +++|++++|+|||||||||||++|+|+++| .+|.+.+++..+ +..++++||...+.
T Consensus 16 ~~l~~i~~~--i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (234)
T cd03251 16 PVLRDISLD--IPAGETVALVGPSGSGKSTLVNLIPRFYDV--DSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLF 88 (234)
T ss_pred cceeeeeEE--EcCCCEEEEECCCCCCHHHHHHHHhccccC--CCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeec
Confidence 456677777 999999999999999999999999999985 455555554432 34578888875443
No 127
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.53 E-value=6.5e-08 Score=105.76 Aligned_cols=63 Identities=22% Similarity=0.210 Sum_probs=48.9
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc-------ccccceeeecCc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII-------KDSIRDCFVTGK 488 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL-------rdsIr~VFQTGk 488 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++..+ ...++++||...
T Consensus 15 ~~l~~vs~~--i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~ 84 (236)
T TIGR03864 15 RALDDVSFT--VRPGEFVALLGPNGAGKSTLFSLLTRLYVA--QEGQISVAGHDLRRAPRAALARLGVVFQQPT 84 (236)
T ss_pred EEEeeeEEE--EcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEcccCChhhhhhEEEeCCCCC
Confidence 466777777 999999999999999999999999999985 455565555433 235778888743
No 128
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.53 E-value=7.6e-08 Score=107.49 Aligned_cols=61 Identities=21% Similarity=0.093 Sum_probs=48.4
Q ss_pred cccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc--------ccccceeeecC
Q psy5893 423 HVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII--------KDSIRDCFVTG 487 (1182)
Q Consensus 423 ~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL--------rdsIr~VFQTG 487 (1182)
.+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++..+ +..++++||..
T Consensus 24 ~l~~isl~--i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~ 92 (269)
T PRK13648 24 TLKDVSFN--IPKGQWTSIVGHNGSGKSTIAKLMIGIEKV--KSGEIFYNNQAITDDNFEKLRKHIGIVFQNP 92 (269)
T ss_pred ceeeeEEE--EcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEECCcCCHHHHHhheeEEEeCh
Confidence 56666666 999999999999999999999999999985 455566655433 34678888875
No 129
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=98.53 E-value=8.2e-08 Score=105.09 Aligned_cols=65 Identities=25% Similarity=0.185 Sum_probs=50.5
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc----------ccccceeeecCccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII----------KDSIRDCFVTGKWK 490 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL----------rdsIr~VFQTGkw~ 490 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++..+ +..++++||...+.
T Consensus 15 ~il~~~s~~--i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 89 (240)
T PRK09493 15 QVLHNIDLN--IDQGEVVVIIGPSGSGKSTLLRCINKLEEI--TSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLF 89 (240)
T ss_pred EEeeeeeEE--EcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCcCChhHHHHhhceEEEecccccC
Confidence 456777777 999999999999999999999999999984 455565555432 34578888876544
No 130
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=98.53 E-value=8.1e-08 Score=103.59 Aligned_cols=65 Identities=22% Similarity=0.044 Sum_probs=50.8
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc--------ccccceeeecCccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII--------KDSIRDCFVTGKWK 490 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL--------rdsIr~VFQTGkw~ 490 (1182)
..+..++++ +++|++++|+|||||||||||++|+|+.+| .+|.+.+++..+ +..++++||...+.
T Consensus 18 ~~l~~i~~~--i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~ 90 (220)
T cd03245 18 PALDNVSLT--IRAGEKVAIIGRVGSGKSTLLKLLAGLYKP--TSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLF 90 (220)
T ss_pred ccccceEEE--EcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccc
Confidence 356667777 999999999999999999999999999985 455566655432 34688888886554
No 131
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.53 E-value=5.8e-08 Score=110.41 Aligned_cols=66 Identities=15% Similarity=0.084 Sum_probs=52.0
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc-------ccccceeeecCccc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII-------KDSIRDCFVTGKWK 490 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL-------rdsIr~VFQTGkw~ 490 (1182)
+.++..++++ +++|++++|+|||||||||||++|+|+++| .+|.+.+.+..+ +..++++||.....
T Consensus 15 ~~~l~~is~~--i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~--~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~ 87 (301)
T TIGR03522 15 QNALDEVSFE--AQKGRIVGFLGPNGAGKSTTMKIITGYLPP--DSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLY 87 (301)
T ss_pred EEEEEEeEEE--EeCCeEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcccChHHHHhceEEecCCCCCC
Confidence 3467777777 999999999999999999999999999995 455555555433 45688999886544
No 132
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.52 E-value=6.3e-08 Score=108.08 Aligned_cols=62 Identities=23% Similarity=0.109 Sum_probs=48.3
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc--------ccccceeeecC
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII--------KDSIRDCFVTG 487 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL--------rdsIr~VFQTG 487 (1182)
..+..++++ +++|++++|+|||||||||||++|+|+++| .+|.+.+++..+ ...++++||..
T Consensus 27 ~~l~~vsl~--i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~ 96 (267)
T PRK15112 27 EAVKPLSFT--LREGQTLAIIGENGSGKSTLAKMLAGMIEP--TSGELLIDDHPLHFGDYSYRSQRIRMIFQDP 96 (267)
T ss_pred ceeeeeeEE--ecCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CCCEEEECCEECCCCchhhHhccEEEEecCc
Confidence 456667766 999999999999999999999999999995 455555554432 23578888874
No 133
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.52 E-value=7e-08 Score=104.69 Aligned_cols=68 Identities=18% Similarity=0.024 Sum_probs=56.3
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccccc---------cccceeeecCcccc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIK---------DSIRDCFVTGKWKA 491 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeELr---------dsIr~VFQTGkw~~ 491 (1182)
.+++..||++ +++|++++|+||||+||||||++|+|+.+ +.+|.+.|.+.++. ..|.+|.|.-..+.
T Consensus 16 ~~~L~gvsl~--v~~Geiv~llG~NGaGKTTlLkti~Gl~~--~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~ 91 (237)
T COG0410 16 IQALRGVSLE--VERGEIVALLGRNGAGKTTLLKTIMGLVR--PRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFP 91 (237)
T ss_pred eeEEeeeeeE--EcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchh
Confidence 5778888888 99999999999999999999999999999 45778888877664 45777777766554
Q ss_pred c
Q psy5893 492 S 492 (1182)
Q Consensus 492 ~ 492 (1182)
.
T Consensus 92 ~ 92 (237)
T COG0410 92 R 92 (237)
T ss_pred h
Confidence 3
No 134
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=98.52 E-value=7.2e-08 Score=105.34 Aligned_cols=63 Identities=24% Similarity=0.148 Sum_probs=49.3
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc--------ccccceeeecCc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII--------KDSIRDCFVTGK 488 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL--------rdsIr~VFQTGk 488 (1182)
..+..++++ +++|++++|+|||||||||||++|+|+++| .+|.+.+++..+ ...++++||...
T Consensus 17 ~~l~~i~~~--i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~ 87 (238)
T cd03249 17 PILKGLSLT--IPPGKTVALVGSSGCGKSTVVSLLERFYDP--TSGEILLDGVDIRDLNLRWLRSQIGLVSQEPV 87 (238)
T ss_pred cceeceEEE--ecCCCEEEEEeCCCCCHHHHHHHHhccCCC--CCCEEEECCEehhhcCHHHHHhhEEEECCchh
Confidence 466677777 999999999999999999999999999985 455566655432 245788888753
No 135
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.52 E-value=7.5e-08 Score=108.30 Aligned_cols=62 Identities=16% Similarity=0.045 Sum_probs=49.6
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc--------ccccceeeecC
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII--------KDSIRDCFVTG 487 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL--------rdsIr~VFQTG 487 (1182)
..+.+++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++..+ +..++++||..
T Consensus 21 ~~l~~vsl~--i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~ 90 (279)
T PRK13650 21 YTLNDVSFH--VKQGEWLSIIGHNGSGKSTTVRLIDGLLEA--ESGQIIIDGDLLTEENVWDIRHKIGMVFQNP 90 (279)
T ss_pred eeeeeeEEE--EeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEECCcCcHHHHHhhceEEEcCh
Confidence 367777777 999999999999999999999999999985 455555555433 34688999974
No 136
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.52 E-value=3.5e-08 Score=107.41 Aligned_cols=61 Identities=20% Similarity=0.212 Sum_probs=51.6
Q ss_pred ccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccccc----cccceee
Q psy5893 420 KKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIK----DSIRDCF 484 (1182)
Q Consensus 420 ~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeELr----dsIr~VF 484 (1182)
.+++++.+++. +++|++++++|||||||||++|||.|++. |.+|.+.|++.++. ++|++..
T Consensus 14 ~k~av~~isf~--v~~G~i~GllG~NGAGKTTtfRmILglle--~~~G~I~~~g~~~~~~~~~rIGyLP 78 (300)
T COG4152 14 DKKAVDNISFE--VPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLSQEIKNRIGYLP 78 (300)
T ss_pred ceeeecceeee--ecCCeEEEeecCCCCCccchHHHHhccCC--ccCceEEEcCcchhhhhhhhcccCh
Confidence 45678888887 99999999999999999999999999999 67888999987665 4455443
No 137
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.52 E-value=7.8e-08 Score=105.86 Aligned_cols=67 Identities=15% Similarity=0.213 Sum_probs=52.1
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCC-CCCcccccCccccc--------ccccceeeecCccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTK-TPLSVIKGPVTLII--------KDSIRDCFVTGKWK 490 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~-~~~SGii~wdgeEL--------rdsIr~VFQTGkw~ 490 (1182)
..+.+++++ +.+|++++|+|||||||||||++|+|++++ .|.+|.+.+++.++ +..++++||...+.
T Consensus 16 ~~l~~isl~--i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~ 91 (246)
T PRK14269 16 QALFDINMQ--IEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVF 91 (246)
T ss_pred eeeeeeEEE--EcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCccc
Confidence 456667766 999999999999999999999999999853 34567666666543 34688889886554
No 138
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.52 E-value=6.9e-08 Score=103.39 Aligned_cols=67 Identities=18% Similarity=0.163 Sum_probs=50.7
Q ss_pred ccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCc------ccccCcccccccccceeeecCc
Q psy5893 420 KKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLS------VIKGPVTLIIKDSIRDCFVTGK 488 (1182)
Q Consensus 420 ~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~S------Gii~wdgeELrdsIr~VFQTGk 488 (1182)
++..+..+++. ..+|++++|||||||||||||+.|+|-+.|+.|. ....|...++....+...|...
T Consensus 13 Gr~ll~~vsl~--~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~ 85 (259)
T COG4559 13 GRRLLDGVSLD--LRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSS 85 (259)
T ss_pred cceeccCccee--ccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcc
Confidence 45677888888 9999999999999999999999999999965544 2344555555555555555543
No 139
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=98.52 E-value=7.2e-08 Score=110.99 Aligned_cols=64 Identities=14% Similarity=0.077 Sum_probs=50.9
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCC--CCcccccCcccccc------------cccceeeecC
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKT--PLSVIKGPVTLIIK------------DSIRDCFVTG 487 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~--~~SGii~wdgeELr------------dsIr~VFQTG 487 (1182)
.++.+++++ +.+|++++|||+||||||||+++|+|++++. +.+|.+.+++.++. ..|+++||..
T Consensus 21 ~~l~~vsl~--i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~ 98 (326)
T PRK11022 21 RAVDRISYS--VKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDP 98 (326)
T ss_pred EEEeeeEEE--ECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCc
Confidence 467777777 9999999999999999999999999999741 24566666665432 2589999986
No 140
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=98.52 E-value=7.1e-08 Score=107.51 Aligned_cols=64 Identities=16% Similarity=-0.001 Sum_probs=50.2
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc--------ccccceeeecCcc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII--------KDSIRDCFVTGKW 489 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL--------rdsIr~VFQTGkw 489 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++..+ +..++++||....
T Consensus 25 ~il~~vs~~--i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~ 96 (265)
T PRK10575 25 TLLHPLSLT--FPAGKVTGLIGHNGSGKSTLLKMLGRHQPP--SEGEILLDAQPLESWSSKAFARKVAYLPQQLPA 96 (265)
T ss_pred EEEeeeeeE--EcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCEehhhCCHHHHhhheEEeccCCCC
Confidence 466777777 999999999999999999999999999984 456666655433 3458888887443
No 141
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=98.52 E-value=4.1e-08 Score=104.38 Aligned_cols=69 Identities=16% Similarity=0.156 Sum_probs=51.1
Q ss_pred eeeeecccccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcc-------cccccccceee
Q psy5893 412 RRKEDIQAKKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVT-------LIIKDSIRDCF 484 (1182)
Q Consensus 412 ~~~~~~~~~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdg-------eELrdsIr~VF 484 (1182)
+....+++..+++.+|+|. +..|+++||+|||||||||+||+|++|+.|+.|. +.+++ ..++..|+.+|
T Consensus 6 ~l~K~y~~~v~AvrdVSF~--ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~--v~idg~d~~~~p~~vrr~IGVl~ 81 (245)
T COG4555 6 DLTKSYGSKVQAVRDVSFE--AEEGEITGLLGENGAGKTTLLRMIATLLIPDSGK--VTIDGVDTVRDPSFVRRKIGVLF 81 (245)
T ss_pred ehhhhccCHHhhhhheeEE--eccceEEEEEcCCCCCchhHHHHHHHhccCCCce--EEEeecccccChHHHhhhcceec
Confidence 3344444444566677666 9999999999999999999999999999965554 33332 24467788887
No 142
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=98.52 E-value=7.6e-08 Score=106.69 Aligned_cols=67 Identities=25% Similarity=0.237 Sum_probs=51.4
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCC---CcccccCccccc----------ccccceeeecCc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTP---LSVIKGPVTLII----------KDSIRDCFVTGK 488 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~---~SGii~wdgeEL----------rdsIr~VFQTGk 488 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++|.| .+|.+.+++..+ +..++++||...
T Consensus 18 ~~l~~isl~--i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 95 (258)
T PRK14241 18 HAVEDVNLN--IEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPN 95 (258)
T ss_pred eeeeeeeEE--EcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccc
Confidence 456667766 99999999999999999999999999997532 467666665433 345788888754
Q ss_pred cc
Q psy5893 489 WK 490 (1182)
Q Consensus 489 w~ 490 (1182)
..
T Consensus 96 ~~ 97 (258)
T PRK14241 96 PF 97 (258)
T ss_pred cC
Confidence 43
No 143
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.51 E-value=8e-08 Score=103.10 Aligned_cols=64 Identities=20% Similarity=0.069 Sum_probs=49.8
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc-------ccccceeeecCccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII-------KDSIRDCFVTGKWK 490 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL-------rdsIr~VFQTGkw~ 490 (1182)
..+..++++ +.+| +++|+|||||||||||++|+|+++| .+|.+.+++..+ +..++++||...+.
T Consensus 14 ~~l~~vs~~--i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~ 84 (211)
T cd03264 14 RALDGVSLT--LGPG-MYGLLGPNGAGKTTLMRILATLTPP--SSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVY 84 (211)
T ss_pred EEEcceeEE--EcCC-cEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCCccccchHHHHhheEEecCCCccc
Confidence 456677777 8899 9999999999999999999999985 455565555433 45678888886554
No 144
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=98.51 E-value=9.4e-08 Score=102.35 Aligned_cols=65 Identities=18% Similarity=0.059 Sum_probs=51.0
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc--------ccccceeeecCccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII--------KDSIRDCFVTGKWK 490 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL--------rdsIr~VFQTGkw~ 490 (1182)
..+..+++. +.+|++++|+|||||||||||++|+|++++ .+|.+.+++..+ +..++++||...+.
T Consensus 22 ~~l~~isl~--i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~ 94 (207)
T cd03369 22 PVLKNVSFK--VKAGEKIGIVGRTGAGKSTLILALFRFLEA--EEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLF 94 (207)
T ss_pred ccccCceEE--ECCCCEEEEECCCCCCHHHHHHHHhcccCC--CCCeEEECCEEhHHCCHHHHHhhEEEEecCCccc
Confidence 356666666 999999999999999999999999999984 556566655432 45688999986544
No 145
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=98.51 E-value=9.5e-08 Score=105.42 Aligned_cols=67 Identities=19% Similarity=0.163 Sum_probs=51.3
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCC---CCCCcccccCccccc----------ccccceeeecCc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFT---KTPLSVIKGPVTLII----------KDSIRDCFVTGK 488 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~---~~~~SGii~wdgeEL----------rdsIr~VFQTGk 488 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|++. +.+.+|.+.+++..+ +..++++||...
T Consensus 20 ~il~~is~~--i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 97 (253)
T PRK14242 20 QALHDISLE--FEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPN 97 (253)
T ss_pred eeecceeEE--EeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCC
Confidence 467777777 99999999999999999999999999964 123466666665433 346888888765
Q ss_pred cc
Q psy5893 489 WK 490 (1182)
Q Consensus 489 w~ 490 (1182)
+.
T Consensus 98 ~~ 99 (253)
T PRK14242 98 PF 99 (253)
T ss_pred CC
Confidence 44
No 146
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=98.51 E-value=1e-07 Score=104.23 Aligned_cols=67 Identities=18% Similarity=0.019 Sum_probs=49.0
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccccc---------cccceeeecCccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIK---------DSIRDCFVTGKWK 490 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeELr---------dsIr~VFQTGkw~ 490 (1182)
..+..++++ +++|++++|+|||||||||||++|+|+++..|.+|.+.+++..+. ..++++||.....
T Consensus 14 ~~l~~isl~--i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 89 (243)
T TIGR01978 14 EILKGVNLT--VKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEI 89 (243)
T ss_pred EEEeccceE--EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeecccccc
Confidence 456667766 999999999999999999999999999521245666666654331 2366777775443
No 147
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=98.51 E-value=9.1e-08 Score=110.29 Aligned_cols=65 Identities=14% Similarity=0.073 Sum_probs=51.4
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCC--CCCcccccCcccccc------------cccceeeecC
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTK--TPLSVIKGPVTLIIK------------DSIRDCFVTG 487 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~--~~~SGii~wdgeELr------------dsIr~VFQTG 487 (1182)
.++..++++ +.+|++++|||+||||||||+++|+|++++ .+.+|.+.+++.++. ..|+++||+.
T Consensus 21 ~~l~~vsl~--i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~ 98 (330)
T PRK15093 21 KAVDRVSMT--LTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEP 98 (330)
T ss_pred EEEeeeEEE--ECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCc
Confidence 467777777 999999999999999999999999999973 234576777665431 3588999986
Q ss_pred c
Q psy5893 488 K 488 (1182)
Q Consensus 488 k 488 (1182)
.
T Consensus 99 ~ 99 (330)
T PRK15093 99 Q 99 (330)
T ss_pred c
Confidence 4
No 148
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=98.51 E-value=8.8e-08 Score=106.16 Aligned_cols=62 Identities=16% Similarity=0.060 Sum_probs=48.6
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccc-----c------------ccccceee
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLI-----I------------KDSIRDCF 484 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeE-----L------------rdsIr~VF 484 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+.+.. + ...++++|
T Consensus 20 ~il~~is~~--i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~ 95 (258)
T PRK11701 20 KGCRDVSFD--LYPGEVLGIVGESGSGKTTLLNALSARLAP--DAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVH 95 (258)
T ss_pred eeeeeeeEE--EeCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCccccccccccCCHHHHHHHhhcceEEEe
Confidence 456677777 999999999999999999999999999985 45555555543 2 23578888
Q ss_pred ecC
Q psy5893 485 VTG 487 (1182)
Q Consensus 485 QTG 487 (1182)
|..
T Consensus 96 q~~ 98 (258)
T PRK11701 96 QHP 98 (258)
T ss_pred eCc
Confidence 875
No 149
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=98.51 E-value=9.2e-08 Score=105.24 Aligned_cols=67 Identities=22% Similarity=0.169 Sum_probs=51.2
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCC---cccccCccccc----------ccccceeeecCc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPL---SVIKGPVTLII----------KDSIRDCFVTGK 488 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~---SGii~wdgeEL----------rdsIr~VFQTGk 488 (1182)
..+..++++ +++|++++|+|||||||||||++|+|+++|++. +|.+.+++..+ +..++++||...
T Consensus 15 ~~l~~vs~~--i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 92 (247)
T TIGR00972 15 EALKNINLD--IPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPN 92 (247)
T ss_pred eeecceeEE--ECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcc
Confidence 356677777 999999999999999999999999999986421 56666655433 346888888754
Q ss_pred cc
Q psy5893 489 WK 490 (1182)
Q Consensus 489 w~ 490 (1182)
+.
T Consensus 93 ~~ 94 (247)
T TIGR00972 93 PF 94 (247)
T ss_pred cC
Confidence 43
No 150
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.51 E-value=7.1e-08 Score=102.71 Aligned_cols=64 Identities=19% Similarity=0.018 Sum_probs=49.0
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc-------ccccceeeecCcc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII-------KDSIRDCFVTGKW 489 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL-------rdsIr~VFQTGkw 489 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++..+ ...+++++|...+
T Consensus 14 ~~l~~vsl~--i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~ 84 (198)
T TIGR01189 14 MLFEGLSFT--LNAGEALQVTGPNGIGKTTLLRILAGLLRP--DSGEVRWNGTALAEQRDEPHRNILYLGHLPGL 84 (198)
T ss_pred EEEeeeeEE--EcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCEEcccchHHhhhheEEeccCccc
Confidence 456777777 999999999999999999999999999984 456666665543 2456677765433
No 151
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.50 E-value=9.5e-08 Score=103.11 Aligned_cols=65 Identities=12% Similarity=0.058 Sum_probs=48.8
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccc------------cccccceeeecCc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLI------------IKDSIRDCFVTGK 488 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeE------------LrdsIr~VFQTGk 488 (1182)
...+..++++ +++|++++|+|||||||||||++|+|+++++ +|.+.+++.. .+..++++||...
T Consensus 14 ~~il~~vs~~--i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~--~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~ 89 (218)
T cd03290 14 LATLSNINIR--IPTGQLTMIVGQVGCGKSSLLLAILGEMQTL--EGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPW 89 (218)
T ss_pred CcceeeeEEE--EcCCCEEEEECCCCCCHHHHHHHHhccCCCC--CCeEEECCcccccccccccchhhcceEEEEcCCCc
Confidence 3456667766 9999999999999999999999999999854 4545554432 2245778888754
Q ss_pred c
Q psy5893 489 W 489 (1182)
Q Consensus 489 w 489 (1182)
.
T Consensus 90 ~ 90 (218)
T cd03290 90 L 90 (218)
T ss_pred c
Confidence 3
No 152
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=98.50 E-value=8.9e-08 Score=107.67 Aligned_cols=63 Identities=14% Similarity=0.049 Sum_probs=49.7
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc---------ccccceeeecC
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII---------KDSIRDCFVTG 487 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL---------rdsIr~VFQTG 487 (1182)
+..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++..+ +..++++||..
T Consensus 23 ~~vl~~vs~~--i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~ 94 (280)
T PRK13633 23 KLALDDVNLE--VKKGEFLVILGRNGSGKSTIAKHMNALLIP--SEGKVYVDGLDTSDEENLWDIRNKAGMVFQNP 94 (280)
T ss_pred cceeeeeEEE--EcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEeccccccHHHHhhheEEEecCh
Confidence 3477777877 999999999999999999999999999995 445555554332 34678888874
No 153
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.50 E-value=6e-08 Score=101.95 Aligned_cols=60 Identities=18% Similarity=0.088 Sum_probs=46.9
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc--------ccccceeee
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII--------KDSIRDCFV 485 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL--------rdsIr~VFQ 485 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.|++..+ ...++++||
T Consensus 13 ~~l~~~~~~--i~~G~~~~l~G~nGsGKStLl~~i~G~~~~--~~G~v~~~g~~~~~~~~~~~~~~i~~~~q 80 (180)
T cd03214 13 TVLDDLSLS--IEAGEIVGILGPNGAGKSTLLKTLAGLLKP--SSGEILLDGKDLASLSPKELARKIAYVPQ 80 (180)
T ss_pred eeEeeeEEE--ECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECCcCCHHHHHHHHhHHHH
Confidence 356666666 999999999999999999999999999984 456666665443 235677777
No 154
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=98.50 E-value=9.7e-08 Score=106.03 Aligned_cols=67 Identities=19% Similarity=0.152 Sum_probs=50.6
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCC---CCCcccccCccccc----------ccccceeeecCc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTK---TPLSVIKGPVTLII----------KDSIRDCFVTGK 488 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~---~~~SGii~wdgeEL----------rdsIr~VFQTGk 488 (1182)
..+..++++ +++|++++|+|||||||||||++|+|++.+ .|.+|.+.+++..+ +..++++||...
T Consensus 27 ~il~~isl~--i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 104 (260)
T PRK10744 27 HALKNINLD--IAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPT 104 (260)
T ss_pred EEeeceeEE--EcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCc
Confidence 456677776 999999999999999999999999999862 13456555554332 356888998864
Q ss_pred cc
Q psy5893 489 WK 490 (1182)
Q Consensus 489 w~ 490 (1182)
+.
T Consensus 105 ~~ 106 (260)
T PRK10744 105 PF 106 (260)
T ss_pred cC
Confidence 43
No 155
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.50 E-value=1.1e-07 Score=105.04 Aligned_cols=67 Identities=18% Similarity=0.172 Sum_probs=51.7
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCC---CcccccCccccc----------ccccceeeecCc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTP---LSVIKGPVTLII----------KDSIRDCFVTGK 488 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~---~SGii~wdgeEL----------rdsIr~VFQTGk 488 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+.+|.+ .+|.+.+++..+ +..++++||...
T Consensus 18 ~~l~~isl~--i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 95 (251)
T PRK14270 18 QALNDINLP--IYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPN 95 (251)
T ss_pred eeeeceeEE--EcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCC
Confidence 456677777 99999999999999999999999999987532 456666655433 345888898865
Q ss_pred cc
Q psy5893 489 WK 490 (1182)
Q Consensus 489 w~ 490 (1182)
..
T Consensus 96 ~~ 97 (251)
T PRK14270 96 PF 97 (251)
T ss_pred cC
Confidence 44
No 156
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.50 E-value=7.9e-08 Score=107.48 Aligned_cols=65 Identities=22% Similarity=0.137 Sum_probs=50.0
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc------------ccccceeeecCcc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII------------KDSIRDCFVTGKW 489 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL------------rdsIr~VFQTGkw 489 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++..+ ...++++||...+
T Consensus 38 ~il~~is~~--i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p--~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 113 (269)
T cd03294 38 VGVNDVSLD--VREGEIFVIMGLSGSGKSTLLRCINRLIEP--TSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFAL 113 (269)
T ss_pred eEeeeeEEE--EcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEccccChhhhhhhhcCcEEEEecCccc
Confidence 456667777 999999999999999999999999999985 455555555432 2357888887544
Q ss_pred c
Q psy5893 490 K 490 (1182)
Q Consensus 490 ~ 490 (1182)
.
T Consensus 114 ~ 114 (269)
T cd03294 114 L 114 (269)
T ss_pred C
Confidence 4
No 157
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.50 E-value=1.2e-07 Score=104.54 Aligned_cols=67 Identities=21% Similarity=0.189 Sum_probs=51.8
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCC---CcccccCccccc----------ccccceeeecCc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTP---LSVIKGPVTLII----------KDSIRDCFVTGK 488 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~---~SGii~wdgeEL----------rdsIr~VFQTGk 488 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++|.+ .+|.+.+++..+ +..++++||...
T Consensus 18 ~~l~~vs~~--i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 95 (252)
T PRK14272 18 QAVKNVNLD--VQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPN 95 (252)
T ss_pred EeeccceEE--EcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCc
Confidence 466777777 99999999999999999999999999998654 256665555432 346888898865
Q ss_pred cc
Q psy5893 489 WK 490 (1182)
Q Consensus 489 w~ 490 (1182)
..
T Consensus 96 ~~ 97 (252)
T PRK14272 96 PF 97 (252)
T ss_pred cC
Confidence 44
No 158
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.50 E-value=9.1e-08 Score=105.33 Aligned_cols=68 Identities=22% Similarity=0.230 Sum_probs=51.8
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCC---CCcccccCccccc---------ccccceeeecCc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKT---PLSVIKGPVTLII---------KDSIRDCFVTGK 488 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~---~~SGii~wdgeEL---------rdsIr~VFQTGk 488 (1182)
+..+..++++ +.+|++++|+|||||||||||++|+|++++. +.+|.+.+++..+ +..++++||...
T Consensus 16 ~~~l~~vs~~--i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~ 93 (249)
T PRK14253 16 NQALKSINLP--IPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPN 93 (249)
T ss_pred eeeeecceEE--ecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCC
Confidence 3467777777 9999999999999999999999999999854 2356655554332 345888888865
Q ss_pred cc
Q psy5893 489 WK 490 (1182)
Q Consensus 489 w~ 490 (1182)
..
T Consensus 94 ~~ 95 (249)
T PRK14253 94 PF 95 (249)
T ss_pred cC
Confidence 44
No 159
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.50 E-value=1e-07 Score=101.96 Aligned_cols=63 Identities=16% Similarity=-0.042 Sum_probs=48.0
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc-------ccccceeeecCc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII-------KDSIRDCFVTGK 488 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL-------rdsIr~VFQTGk 488 (1182)
..+..++++ +++|++++|+||||||||||+++|+|+++| .+|.+.+++..+ ...++++++...
T Consensus 15 ~~l~~vs~~--i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~ 84 (204)
T PRK13538 15 ILFSGLSFT--LNAGELVQIEGPNGAGKTSLLRILAGLARP--DAGEVLWQGEPIRRQRDEYHQDLLYLGHQPG 84 (204)
T ss_pred EEEecceEE--ECCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEcccchHHhhhheEEeCCccc
Confidence 466777777 999999999999999999999999999995 456566655433 234566666543
No 160
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.50 E-value=9.1e-08 Score=119.75 Aligned_cols=87 Identities=14% Similarity=0.055 Sum_probs=65.0
Q ss_pred eeceeeeeccccc-ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcc--------cccccc
Q psy5893 409 RKFRRKEDIQAKK-HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVT--------LIIKDS 479 (1182)
Q Consensus 409 ~~~~~~~~~~~~k-~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdg--------eELrds 479 (1182)
.+-.+...|.... ..+.+++++ +++|+++||||+||||||||+|+|.|++.|+ .|.+.+++ ..+++.
T Consensus 473 ~~~nvsf~y~~~~~~vL~~isL~--I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~--~G~I~~dg~dl~~i~~~~lR~~ 548 (709)
T COG2274 473 EFENVSFRYGPDDPPVLEDLSLE--IPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ--QGRILLDGVDLNDIDLASLRRQ 548 (709)
T ss_pred EEEEEEEEeCCCCcchhhceeEE--eCCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CceEEECCEeHHhcCHHHHHhh
Confidence 3555666665543 356666666 9999999999999999999999999999954 45555444 355789
Q ss_pred cceeeecCcccccchHHHhh
Q psy5893 480 IRDCFVTGKWKASEDASELL 499 (1182)
Q Consensus 480 Ir~VFQTGkw~~~~~~~~ll 499 (1182)
|+++.|+.-++.+.-.+++.
T Consensus 549 ig~V~Q~~~Lf~gSI~eNi~ 568 (709)
T COG2274 549 VGYVLQDPFLFSGSIRENIA 568 (709)
T ss_pred eeEEcccchhhcCcHHHHHh
Confidence 99999999887655444443
No 161
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.50 E-value=8.7e-08 Score=101.81 Aligned_cols=66 Identities=15% Similarity=0.060 Sum_probs=50.4
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc----ccccceeeecCcc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII----KDSIRDCFVTGKW 489 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL----rdsIr~VFQTGkw 489 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+..+.+.+|.+.+++..+ ...++++||....
T Consensus 21 ~~l~~vs~~--i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~ 90 (192)
T cd03232 21 QLLNNISGY--VKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVH 90 (192)
T ss_pred EeEEccEEE--EeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCcc
Confidence 456666666 99999999999999999999999999864334567676666543 4567888886543
No 162
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.50 E-value=9.9e-08 Score=107.71 Aligned_cols=62 Identities=18% Similarity=0.087 Sum_probs=48.4
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccc-------------cccccceeeecC
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLI-------------IKDSIRDCFVTG 487 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeE-------------LrdsIr~VFQTG 487 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++|+ +|.+.+++.. ++..|+++||..
T Consensus 25 ~il~~is~~--i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~ 99 (289)
T PRK13645 25 KALNNTSLT--FKKNKVTCVIGTTGSGKSTMIQLTNGLIISE--TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFP 99 (289)
T ss_pred ceeeeeEEE--EeCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CceEEECCEEccccccccccHHHHhccEEEEEeCc
Confidence 367777777 9999999999999999999999999999854 4545444432 234678888874
No 163
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.50 E-value=7.3e-08 Score=101.48 Aligned_cols=61 Identities=15% Similarity=-0.002 Sum_probs=47.2
Q ss_pred cccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc---------ccccceeeecC
Q psy5893 423 HVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII---------KDSIRDCFVTG 487 (1182)
Q Consensus 423 ~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL---------rdsIr~VFQTG 487 (1182)
.+..++++ +++|++++|+|||||||||||++|+|+++|+ +|.+.+++..+ +..++++||..
T Consensus 15 ~l~~vs~~--i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~ 84 (182)
T cd03215 15 AVRDVSFE--VRAGEIVGIAGLVGNGQTELAEALFGLRPPA--SGEITLDGKPVTRRSPRDAIRAGIAYVPEDR 84 (182)
T ss_pred eecceEEE--EcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEECCccCHHHHHhCCeEEecCCc
Confidence 55666666 9999999999999999999999999999954 45555554332 34678888863
No 164
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=98.50 E-value=1e-07 Score=105.44 Aligned_cols=64 Identities=17% Similarity=-0.020 Sum_probs=49.0
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCC--CcccccCccccc------ccccceeeecC
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTP--LSVIKGPVTLII------KDSIRDCFVTG 487 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~--~SGii~wdgeEL------rdsIr~VFQTG 487 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++|.. .+|.+.+++..+ ...++++||..
T Consensus 17 ~il~~vsl~--i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~ 88 (254)
T PRK10418 17 PLVHGVSLT--LQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNP 88 (254)
T ss_pred ceecceEEE--EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCC
Confidence 456667766 99999999999999999999999999998511 455555555432 24578888875
No 165
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=98.49 E-value=1e-07 Score=106.46 Aligned_cols=67 Identities=24% Similarity=0.237 Sum_probs=51.5
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCC---CCcccccCccccc----------ccccceeeecCc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKT---PLSVIKGPVTLII----------KDSIRDCFVTGK 488 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~---~~SGii~wdgeEL----------rdsIr~VFQTGk 488 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|++++. +.+|.+.+++..+ +..++++||...
T Consensus 33 ~il~~isl~--i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 110 (267)
T PRK14235 33 QALFDVDLD--IPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPN 110 (267)
T ss_pred EEEEEEEEE--EcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCC
Confidence 466777777 9999999999999999999999999999741 2456666655433 345788888765
Q ss_pred cc
Q psy5893 489 WK 490 (1182)
Q Consensus 489 w~ 490 (1182)
+.
T Consensus 111 ~~ 112 (267)
T PRK14235 111 PF 112 (267)
T ss_pred CC
Confidence 44
No 166
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.49 E-value=1.1e-07 Score=101.36 Aligned_cols=66 Identities=21% Similarity=0.150 Sum_probs=51.6
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccC--CCCCCcccccCccccc-----ccccceeeecCccc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNF--TKTPLSVIKGPVTLII-----KDSIRDCFVTGKWK 490 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~--~~~~~SGii~wdgeEL-----rdsIr~VFQTGkw~ 490 (1182)
+..+..++++ +.+|++++|+|||||||||||++|+|++ + +.+|.+.+++..+ +..++++||.....
T Consensus 22 ~~~l~~~~~~--i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~--~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~ 94 (194)
T cd03213 22 KQLLKNVSGK--AKPGELTAIMGPSGAGKSTLLNALAGRRTGL--GVSGEVLINGRPLDKRSFRKIIGYVPQDDILH 94 (194)
T ss_pred ccceecceEE--EcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCEeCchHhhhheEEEccCcccCC
Confidence 3467777777 9999999999999999999999999999 7 4556666665543 45678888875443
No 167
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=98.49 E-value=1.1e-07 Score=119.42 Aligned_cols=87 Identities=21% Similarity=0.121 Sum_probs=66.2
Q ss_pred eeceeeeeccc-ccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccc--------ccccc
Q psy5893 409 RKFRRKEDIQA-KKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTL--------IIKDS 479 (1182)
Q Consensus 409 ~~~~~~~~~~~-~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdge--------ELrds 479 (1182)
.+-.+...|.. .+..+..++++ +++|+.+||+||||||||||+++|+|+++| .+|.+.+++. .++..
T Consensus 453 ~~~nvsf~Y~~~~~~vL~~isl~--i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~~i~~~~~~~lr~~ 528 (686)
T TIGR03797 453 EVDRVTFRYRPDGPLILDDVSLQ--IEPGEFVAIVGPSGSGKSTLLRLLLGFETP--ESGSVFYDGQDLAGLDVQAVRRQ 528 (686)
T ss_pred EEEEEEEEcCCCCccceeeeEEE--ECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEEcCcCCHHHHHhc
Confidence 34555555532 34577777777 999999999999999999999999999995 4555555544 45678
Q ss_pred cceeeecCcccccchHHHhh
Q psy5893 480 IRDCFVTGKWKASEDASELL 499 (1182)
Q Consensus 480 Ir~VFQTGkw~~~~~~~~ll 499 (1182)
|++++|+..++.+.-.++|.
T Consensus 529 i~~v~Q~~~lf~gTI~eNi~ 548 (686)
T TIGR03797 529 LGVVLQNGRLMSGSIFENIA 548 (686)
T ss_pred cEEEccCCccCcccHHHHHh
Confidence 99999999888765555554
No 168
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.49 E-value=9e-08 Score=102.79 Aligned_cols=61 Identities=15% Similarity=0.016 Sum_probs=46.7
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc-----ccccceeeec
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII-----KDSIRDCFVT 486 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL-----rdsIr~VFQT 486 (1182)
..+..++++ +++|++++|+|||||||||||++|+|++++ .+|.+.+++..+ +..++++++.
T Consensus 16 ~~l~~is~~--i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (207)
T PRK13539 16 VLFSGLSFT--LAAGEALVLTGPNGSGKTTLLRLIAGLLPP--AAGTIKLDGGDIDDPDVAEACHYLGHR 81 (207)
T ss_pred EEEeceEEE--EcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEeCcchhhHhhcEEecCC
Confidence 456667766 999999999999999999999999999984 456666665432 3345666654
No 169
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=98.49 E-value=1e-07 Score=105.58 Aligned_cols=65 Identities=17% Similarity=0.111 Sum_probs=50.6
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc---------------------cccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII---------------------KDSI 480 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL---------------------rdsI 480 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|++++ .+|.+.+++..+ ...+
T Consensus 19 ~~l~~is~~--i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (257)
T PRK10619 19 EVLKGVSLQ--ANAGDVISIIGSSGSGKSTFLRCINFLEKP--SEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRL 94 (257)
T ss_pred EEEeeeEEE--EcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEcccccccccccccccchHHHHHhhce
Confidence 466777777 999999999999999999999999999985 445555554332 3467
Q ss_pred ceeeecCccc
Q psy5893 481 RDCFVTGKWK 490 (1182)
Q Consensus 481 r~VFQTGkw~ 490 (1182)
++++|...+.
T Consensus 95 ~~v~q~~~l~ 104 (257)
T PRK10619 95 TMVFQHFNLW 104 (257)
T ss_pred EEEecCcccC
Confidence 8888886554
No 170
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.49 E-value=7.9e-08 Score=103.13 Aligned_cols=61 Identities=20% Similarity=0.074 Sum_probs=47.0
Q ss_pred CCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc------ccccceeeecCccc
Q psy5893 428 DRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII------KDSIRDCFVTGKWK 490 (1182)
Q Consensus 428 d~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL------rdsIr~VFQTGkw~ 490 (1182)
+.++.+.+|++++|+|||||||||||++|+|+++|+ +|.+.+++..+ ...++++||+....
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~--~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~ 82 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ--SGRVLINGVDVTAAPPADRPVSMLFQENNLF 82 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEEcCcCCHhHccEEEEecccccC
Confidence 444449999999999999999999999999999854 45555555433 24588889886544
No 171
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=98.49 E-value=1.1e-07 Score=103.10 Aligned_cols=65 Identities=22% Similarity=0.064 Sum_probs=50.8
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc--------ccccceeeecCccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII--------KDSIRDCFVTGKWK 490 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL--------rdsIr~VFQTGkw~ 490 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++..+ ...++++||...+.
T Consensus 28 ~~l~~is~~--i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~ 100 (226)
T cd03248 28 LVLQDVSFT--LHPGEVTALVGPSGSGKSTVVALLENFYQP--QGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLF 100 (226)
T ss_pred ccccceEEE--EcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCcEEEECCCchHHcCHHHHHhhEEEEecccHHH
Confidence 466777777 999999999999999999999999999985 455566655432 34688888886443
No 172
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=98.49 E-value=1.1e-07 Score=105.67 Aligned_cols=68 Identities=22% Similarity=0.175 Sum_probs=52.5
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCC-CcccccCccccc-------------ccccceeeec
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTP-LSVIKGPVTLII-------------KDSIRDCFVT 486 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~-~SGii~wdgeEL-------------rdsIr~VFQT 486 (1182)
+..+..++++ +.+|++++|+|||||||||||++|+|+++|++ .+|.+.+++..+ ...++++||.
T Consensus 17 ~~il~~vs~~--i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~ 94 (262)
T PRK09984 17 HQALHAVDLN--IHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQ 94 (262)
T ss_pred eEEEecceEE--EcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccc
Confidence 3466777777 99999999999999999999999999998654 246666665433 2357888888
Q ss_pred Cccc
Q psy5893 487 GKWK 490 (1182)
Q Consensus 487 Gkw~ 490 (1182)
..+.
T Consensus 95 ~~~~ 98 (262)
T PRK09984 95 FNLV 98 (262)
T ss_pred cccc
Confidence 6554
No 173
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.49 E-value=1.3e-07 Score=104.49 Aligned_cols=68 Identities=22% Similarity=0.221 Sum_probs=50.8
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCC--CC-CCcccccCccccc----------ccccceeeecCc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFT--KT-PLSVIKGPVTLII----------KDSIRDCFVTGK 488 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~--~~-~~SGii~wdgeEL----------rdsIr~VFQTGk 488 (1182)
..+..++++ +++|++++|+|||||||||||++|+|+++ |. +.+|.+.+++..+ +..++++||...
T Consensus 18 ~~l~~isl~--i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 95 (252)
T PRK14256 18 HAVKDVSMD--FPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPN 95 (252)
T ss_pred eEEecceEE--EcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCC
Confidence 456677776 99999999999999999999999999986 32 2356555554332 345888898865
Q ss_pred ccc
Q psy5893 489 WKA 491 (1182)
Q Consensus 489 w~~ 491 (1182)
...
T Consensus 96 ~~~ 98 (252)
T PRK14256 96 PFP 98 (252)
T ss_pred CCC
Confidence 543
No 174
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.49 E-value=1.1e-07 Score=105.64 Aligned_cols=64 Identities=25% Similarity=0.155 Sum_probs=49.8
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc--------ccccceeeecCcc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII--------KDSIRDCFVTGKW 489 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL--------rdsIr~VFQTGkw 489 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++..+ ...++++||...+
T Consensus 16 ~il~~is~~--i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~ 87 (258)
T PRK13548 16 TLLDDVSLT--LRPGEVVAILGPNGAGKSTLLRALSGELSP--DSGEVRLNGRPLADWSPAELARRRAVLPQHSSL 87 (258)
T ss_pred eeeeeeeEE--EcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEEcccCCHHHhhhheEEEccCCcC
Confidence 467777777 999999999999999999999999999985 455555555432 3457888887544
No 175
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.49 E-value=1.2e-07 Score=103.98 Aligned_cols=66 Identities=12% Similarity=0.084 Sum_probs=50.7
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc---------ccccceeeecCcccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII---------KDSIRDCFVTGKWKA 491 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL---------rdsIr~VFQTGkw~~ 491 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++|+ +|.+.+++..+ ...++++||...+..
T Consensus 16 ~~l~~vs~~--i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~--~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 90 (242)
T TIGR03411 16 KALNDLSLY--VDPGELRVIIGPNGAGKTTMMDVITGKTRPD--EGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFE 90 (242)
T ss_pred EEeeeeeEE--EcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CCeEEECCeecCCCCHHHHHhcCeeEeccccccCC
Confidence 456677777 9999999999999999999999999999854 55555555432 235788888765553
No 176
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=98.48 E-value=1.1e-07 Score=106.39 Aligned_cols=62 Identities=21% Similarity=0.120 Sum_probs=48.7
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc-----------ccccceeeecC
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII-----------KDSIRDCFVTG 487 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL-----------rdsIr~VFQTG 487 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|++++ .+|.+.+++..+ +..++++||..
T Consensus 26 ~il~~vs~~--i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~ 98 (268)
T PRK10419 26 TVLNNVSLS--LKSGETVALLGRSGCGKSTLARLLVGLESP--SQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDS 98 (268)
T ss_pred eeEeceeEE--EcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEeccccChhHHHHHHhcEEEEEcCh
Confidence 456667776 999999999999999999999999999985 455555554432 34688888874
No 177
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.48 E-value=1.2e-07 Score=98.44 Aligned_cols=49 Identities=22% Similarity=0.097 Sum_probs=40.0
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTL 474 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdge 474 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++|+ +|.+.+++.
T Consensus 14 ~vl~~i~~~--i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~--~G~v~~~g~ 62 (163)
T cd03216 14 KALDGVSLS--VRRGEVHALLGENGAGKSTLMKILSGLYKPD--SGEILVDGK 62 (163)
T ss_pred EEEeeeEEE--EeCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CeEEEECCE
Confidence 456677777 9999999999999999999999999999954 454555443
No 178
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.48 E-value=1.2e-07 Score=102.37 Aligned_cols=65 Identities=17% Similarity=0.035 Sum_probs=50.6
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccc--------cccccceeeecCccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLI--------IKDSIRDCFVTGKWK 490 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeE--------LrdsIr~VFQTGkw~ 490 (1182)
..+..++++ +++|++++|+|||||||||||++|+|+++| .+|.+.+++.. +...++++||...+.
T Consensus 18 ~~l~~i~~~--i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~ 90 (221)
T cd03244 18 PVLKNISFS--IKPGEKVGIVGRTGSGKSSLLLALFRLVEL--SSGSILIDGVDISKIGLHDLRSRISIIPQDPVLF 90 (221)
T ss_pred ccccceEEE--ECCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCCEEEECCEEhHhCCHHHHhhhEEEECCCCccc
Confidence 466777777 999999999999999999999999999985 45555555433 345688888876544
No 179
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=98.48 E-value=8e-08 Score=110.66 Aligned_cols=62 Identities=26% Similarity=0.101 Sum_probs=50.6
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc-----------ccccceeeecC
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII-----------KDSIRDCFVTG 487 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL-----------rdsIr~VFQTG 487 (1182)
.++.+++++ +.+|++++|+|+||||||||+++|+|++++ .+|.+.+.+.++ +..|+++||..
T Consensus 29 ~~l~~vsl~--i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p--~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~ 101 (327)
T PRK11308 29 KALDGVSFT--LERGKTLAVVGESGCGKSTLARLLTMIETP--TGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNP 101 (327)
T ss_pred eEEeeeEEE--ECCCCEEEEECCCCCcHHHHHHHHHcCCCC--CCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCc
Confidence 467777777 999999999999999999999999999985 456666655433 34689999986
No 180
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.48 E-value=1.1e-07 Score=105.34 Aligned_cols=67 Identities=27% Similarity=0.324 Sum_probs=51.3
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCC---CcccccCccccc----------ccccceeeecCc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTP---LSVIKGPVTLII----------KDSIRDCFVTGK 488 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~---~SGii~wdgeEL----------rdsIr~VFQTGk 488 (1182)
..+..++++ +++|++++|+|||||||||||++|+|++++.| .+|.+.+++..+ +..++++||...
T Consensus 26 ~~l~~vs~~--i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 103 (259)
T PRK14274 26 HALKNINLS--IPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGN 103 (259)
T ss_pred eeEEeeEEE--EcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCc
Confidence 467777777 99999999999999999999999999986322 356666655433 345788888865
Q ss_pred cc
Q psy5893 489 WK 490 (1182)
Q Consensus 489 w~ 490 (1182)
+.
T Consensus 104 ~~ 105 (259)
T PRK14274 104 PF 105 (259)
T ss_pred cc
Confidence 44
No 181
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.48 E-value=1.1e-07 Score=106.42 Aligned_cols=67 Identities=24% Similarity=0.128 Sum_probs=51.1
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCC---CCcccccCccccc----------ccccceeeecCc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKT---PLSVIKGPVTLII----------KDSIRDCFVTGK 488 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~---~~SGii~wdgeEL----------rdsIr~VFQTGk 488 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|++++. |.+|.+.+++..+ +..++++||...
T Consensus 27 ~il~~is~~--i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 104 (269)
T PRK14259 27 EAVKNVFCD--IPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPN 104 (269)
T ss_pred EEEcceEEE--EcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCc
Confidence 456677776 9999999999999999999999999998731 3456666655432 345888888765
Q ss_pred cc
Q psy5893 489 WK 490 (1182)
Q Consensus 489 w~ 490 (1182)
+.
T Consensus 105 l~ 106 (269)
T PRK14259 105 PF 106 (269)
T ss_pred cc
Confidence 44
No 182
>KOG0056|consensus
Probab=98.48 E-value=8.4e-08 Score=111.83 Aligned_cols=81 Identities=23% Similarity=0.108 Sum_probs=68.9
Q ss_pred cceeceeeeecccccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc--------cc
Q psy5893 407 GERKFRRKEDIQAKKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII--------KD 478 (1182)
Q Consensus 407 ~~~~~~~~~~~~~~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL--------rd 478 (1182)
.+.+-++...|..++..+.+++++ +.||+++|||||||+||||++|+|.+++.. .+|.+.+++.++ +.
T Consensus 537 ~i~fsnvtF~Y~p~k~vl~disF~--v~pGktvAlVG~SGaGKSTimRlLfRffdv--~sGsI~iDgqdIrnvt~~SLRs 612 (790)
T KOG0056|consen 537 KIEFSNVTFAYDPGKPVLSDISFT--VQPGKTVALVGPSGAGKSTIMRLLFRFFDV--NSGSITIDGQDIRNVTQSSLRS 612 (790)
T ss_pred eEEEEEeEEecCCCCceeecceEE--ecCCcEEEEECCCCCchhHHHHHHHHHhhc--cCceEEEcCchHHHHHHHHHHH
Confidence 455788999999999999999988 999999999999999999999999999994 456666666544 57
Q ss_pred ccceeeecCcccc
Q psy5893 479 SIRDCFVTGKWKA 491 (1182)
Q Consensus 479 sIr~VFQTGkw~~ 491 (1182)
.|+.+.|+.-++.
T Consensus 613 ~IGVVPQDtvLFN 625 (790)
T KOG0056|consen 613 SIGVVPQDTVLFN 625 (790)
T ss_pred hcCcccCcceeec
Confidence 8999999876654
No 183
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.48 E-value=1.1e-07 Score=105.39 Aligned_cols=66 Identities=24% Similarity=0.270 Sum_probs=50.6
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCC---CCcccccCccccc----------ccccceeeecCc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKT---PLSVIKGPVTLII----------KDSIRDCFVTGK 488 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~---~~SGii~wdgeEL----------rdsIr~VFQTGk 488 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|++++. +.+|.+.+++..+ +..++++||...
T Consensus 26 ~il~~vs~~--i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 103 (258)
T PRK14268 26 QALKNVSMQ--IPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPN 103 (258)
T ss_pred eeeeeeEEE--EcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCc
Confidence 467777777 9999999999999999999999999998742 2466666655432 345788888754
Q ss_pred c
Q psy5893 489 W 489 (1182)
Q Consensus 489 w 489 (1182)
.
T Consensus 104 ~ 104 (258)
T PRK14268 104 P 104 (258)
T ss_pred c
Confidence 3
No 184
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=98.48 E-value=1.1e-07 Score=102.82 Aligned_cols=65 Identities=15% Similarity=0.122 Sum_probs=50.7
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc-----------ccccceeeecCccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII-----------KDSIRDCFVTGKWK 490 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL-----------rdsIr~VFQTGkw~ 490 (1182)
..+.+++++ +++|++++|+|||||||||||++|+|+++| .+|.+.+++..+ ...++++||.-.+.
T Consensus 19 ~il~~vs~~--i~~G~~~~I~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 94 (220)
T TIGR02982 19 QVLFDINLE--INPGEIVILTGPSGSGKTTLLTLIGGLRSV--QEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLL 94 (220)
T ss_pred eEEeeeEEE--EcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhc
Confidence 456777777 999999999999999999999999999984 556666655433 34678888875443
No 185
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=98.48 E-value=1.3e-07 Score=104.26 Aligned_cols=67 Identities=22% Similarity=0.194 Sum_probs=50.5
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCC---CcccccCccccc----------ccccceeeecCc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTP---LSVIKGPVTLII----------KDSIRDCFVTGK 488 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~---~SGii~wdgeEL----------rdsIr~VFQTGk 488 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+....| .+|.+.+++..+ +..++++||...
T Consensus 19 ~~l~~~s~~--i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 96 (252)
T PRK14239 19 KALNSVSLD--FYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPN 96 (252)
T ss_pred eeeeeeeEE--EcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCc
Confidence 456677777 99999999999999999999999999954223 356666665433 346888888865
Q ss_pred cc
Q psy5893 489 WK 490 (1182)
Q Consensus 489 w~ 490 (1182)
..
T Consensus 97 ~~ 98 (252)
T PRK14239 97 PF 98 (252)
T ss_pred cC
Confidence 43
No 186
>smart00785 AARP2CN AARP2CN (NUC121) domain. This domain is the central domain of AARP2. It is weakly similar to the GTP-binding domain of elongation factor TU PUBMED:15112237.
Probab=98.48 E-value=4.2e-08 Score=91.49 Aligned_cols=32 Identities=50% Similarity=0.831 Sum_probs=29.9
Q ss_pred HHhhhhhceeeeeccccccccCCceEEEeeeh
Q psy5893 1045 EVKNLGRFIAVMKFRPLIWQTTHSYMLVTYTV 1076 (1182)
Q Consensus 1045 ei~nl~r~i~v~k~rpl~wr~~hpy~~~~~~~ 1076 (1182)
||+||+|||++||+||+.||++|||||++...
T Consensus 1 e~~nL~R~i~~~k~~~l~WR~~rpY~lad~~e 32 (83)
T smart00785 1 EILNLLRFLSVMKPRPLSWRDQHPYMLADRVE 32 (83)
T ss_pred CHHHHHHHHHhccCCCCcccCCCCeEEEEEeE
Confidence 78999999999999999999999999998753
No 187
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=98.47 E-value=1.1e-07 Score=105.41 Aligned_cols=64 Identities=23% Similarity=0.217 Sum_probs=49.6
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc--------ccccceeeecCcc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII--------KDSIRDCFVTGKW 489 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL--------rdsIr~VFQTGkw 489 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|++++ .+|.+.+++..+ +..+++++|...+
T Consensus 15 ~il~~is~~--i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~ 86 (256)
T TIGR03873 15 LIVDGVDVT--APPGSLTGLLGPNGSGKSTLLRLLAGALRP--DAGTVDLAGVDLHGLSRRARARRVALVEQDSDT 86 (256)
T ss_pred EEEeeeeEE--EcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCEEcccCCHHHHhhheEEecccCcc
Confidence 466777777 999999999999999999999999999985 455566655433 2357778887543
No 188
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=98.47 E-value=1.3e-07 Score=104.33 Aligned_cols=48 Identities=25% Similarity=0.279 Sum_probs=39.5
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVT 473 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdg 473 (1182)
..+..++++ +++|++++|+|||||||||||++|+|+++| .+|.+.+++
T Consensus 17 ~~l~~isl~--i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g 64 (253)
T TIGR02323 17 KGCRDVSFD--LYPGEVLGIVGESGSGKSTLLGCLAGRLAP--DHGTATYIM 64 (253)
T ss_pred eEeecceEE--EeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEEec
Confidence 356666666 999999999999999999999999999985 455555554
No 189
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=98.47 E-value=9.8e-08 Score=104.03 Aligned_cols=61 Identities=15% Similarity=0.007 Sum_probs=46.7
Q ss_pred cccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCC--CCcccccCccccc------ccccceeeecC
Q psy5893 425 PQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKT--PLSVIKGPVTLII------KDSIRDCFVTG 487 (1182)
Q Consensus 425 ~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~--~~SGii~wdgeEL------rdsIr~VFQTG 487 (1182)
..++++ +.+|++++|+|||||||||||++|+|+++|. +.+|.+.+++..+ ...++++||..
T Consensus 3 ~~vs~~--i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~ 71 (230)
T TIGR02770 3 QDLNLS--LKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNP 71 (230)
T ss_pred cceeEE--EcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCc
Confidence 345555 9999999999999999999999999999851 1456666666543 23578888875
No 190
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.47 E-value=1.2e-07 Score=102.72 Aligned_cols=63 Identities=21% Similarity=0.123 Sum_probs=48.4
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc----ccccceeeecCc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII----KDSIRDCFVTGK 488 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL----rdsIr~VFQTGk 488 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++..+ ...++++||...
T Consensus 14 ~~l~~vs~~--i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~~~~~~~~~~~~~~~~~q~~~ 80 (223)
T TIGR03740 14 TAVNNISLT--VPKNSVYGLLGPNGAGKSTLLKMITGILRP--TSGEIIFDGHPWTRKDLHKIGSLIESPP 80 (223)
T ss_pred EEEeeeEEE--EcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEeccccccccEEEEcCCCC
Confidence 456677777 999999999999999999999999999984 455565655433 135677777654
No 191
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.47 E-value=1.2e-07 Score=106.67 Aligned_cols=64 Identities=13% Similarity=0.110 Sum_probs=50.6
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCC-cccccCccccc--------ccccceeeecC
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPL-SVIKGPVTLII--------KDSIRDCFVTG 487 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~-SGii~wdgeEL--------rdsIr~VFQTG 487 (1182)
..+..++++ +++|++++|+|||||||||||++|+|+++|+.+ .|.+.+++..+ ...++++||..
T Consensus 21 ~~l~~v~l~--i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~ 93 (282)
T PRK13640 21 PALNDISFS--IPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNP 93 (282)
T ss_pred cceeeEEEE--EcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECH
Confidence 467777777 999999999999999999999999999986542 25566555443 34688899885
No 192
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=98.47 E-value=1.2e-07 Score=104.97 Aligned_cols=65 Identities=20% Similarity=0.167 Sum_probs=50.6
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc--------ccccceeeecCccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII--------KDSIRDCFVTGKWK 490 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL--------rdsIr~VFQTGkw~ 490 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|++++ .+|.+.+++..+ ...++++||...+.
T Consensus 16 ~il~~is~~--i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (255)
T PRK11231 16 RILNDLSLS--LPTGKITALIGPNGCGKSTLLKCFARLLTP--QSGTVFLGDKPISMLSSRQLARRLALLPQHHLTP 88 (255)
T ss_pred EEEeeeeeE--EcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CCcEEEECCEEhHHCCHHHHhhheEEecccCCCC
Confidence 466777777 999999999999999999999999999985 455565555432 34588888886544
No 193
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.47 E-value=1.1e-07 Score=105.39 Aligned_cols=60 Identities=20% Similarity=0.159 Sum_probs=48.6
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccccccccceeeecCc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIKDSIRDCFVTGK 488 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeELrdsIr~VFQTGk 488 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.|.+ ...++++||...
T Consensus 18 ~vl~~vs~~--i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~~---~~~i~~v~q~~~ 77 (251)
T PRK09544 18 RVLSDVSLE--LKPGKILTLLGPNGAGKSTLVRVVLGLVAP--DEGVIKRNG---KLRIGYVPQKLY 77 (251)
T ss_pred eEEEeEEEE--EcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECC---ccCEEEeccccc
Confidence 466777777 999999999999999999999999999984 556666654 235888888754
No 194
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.47 E-value=1.2e-07 Score=100.37 Aligned_cols=64 Identities=23% Similarity=0.239 Sum_probs=50.8
Q ss_pred cccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccccc---cccceeeecC---ccc
Q psy5893 423 HVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIK---DSIRDCFVTG---KWK 490 (1182)
Q Consensus 423 ~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeELr---dsIr~VFQTG---kw~ 490 (1182)
++.+++++ +.+|++++++|||||||||||++++|+.+ |..|.+..++..+. ..-+.+||+- +|-
T Consensus 20 ~le~vsL~--ia~ge~vv~lGpSGcGKTTLLnl~AGf~~--P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl 89 (259)
T COG4525 20 ALEDVSLT--IASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGPGAERGVVFQNEALLPWL 89 (259)
T ss_pred hhhcccee--ecCCCEEEEEcCCCccHHHHHHHHhcCcC--cccceEEECCEeccCCCccceeEeccCccchhh
Confidence 55566666 99999999999999999999999999999 55666666665443 3568899995 664
No 195
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.47 E-value=1.3e-07 Score=116.53 Aligned_cols=75 Identities=16% Similarity=0.096 Sum_probs=60.1
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcc--------cccccccceeeecCccccc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVT--------LIIKDSIRDCFVTGKWKAS 492 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdg--------eELrdsIr~VFQTGkw~~~ 492 (1182)
+..+..++++ +++|+.+|||||||||||||+++|+|++ |+. |.+.+++ ..+++.|++++|+..++.+
T Consensus 363 ~~vL~~i~l~--i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~--G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~ 437 (588)
T PRK11174 363 KTLAGPLNFT--LPAGQRIALVGPSGAGKTSLLNALLGFL-PYQ--GSLKINGIELRELDPESWRKHLSWVGQNPQLPHG 437 (588)
T ss_pred CeeeeeeEEE--EcCCCEEEEECCCCCCHHHHHHHHhcCC-CCC--cEEEECCEecccCCHHHHHhheEEecCCCcCCCc
Confidence 4567777777 9999999999999999999999999999 654 4454444 3456789999999988876
Q ss_pred chHHHhhh
Q psy5893 493 EDASELLR 500 (1182)
Q Consensus 493 ~~~~~ll~ 500 (1182)
.-.++|+-
T Consensus 438 TI~eNI~~ 445 (588)
T PRK11174 438 TLRDNVLL 445 (588)
T ss_pred CHHHHhhc
Confidence 66666543
No 196
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=98.46 E-value=9.4e-08 Score=110.31 Aligned_cols=62 Identities=21% Similarity=0.128 Sum_probs=50.4
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc-----------ccccceeeecC
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII-----------KDSIRDCFVTG 487 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL-----------rdsIr~VFQTG 487 (1182)
.++..++++ +.+|++++|+|+||||||||+++|+|++++ .+|.+.+++..+ +..|+++||..
T Consensus 35 ~~l~~vsl~--i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p--~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~ 107 (331)
T PRK15079 35 KAVDGVTLR--LYEGETLGVVGESGCGKSTFARAIIGLVKA--TDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDP 107 (331)
T ss_pred EEEeeEEEE--EcCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCcEEEECCEECCcCCHHHHHHHhCceEEEecCc
Confidence 456677777 999999999999999999999999999985 456666655443 35689999985
No 197
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.46 E-value=1.1e-07 Score=101.76 Aligned_cols=64 Identities=17% Similarity=-0.015 Sum_probs=48.3
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc-------ccccceeeecCcc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII-------KDSIRDCFVTGKW 489 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL-------rdsIr~VFQTGkw 489 (1182)
..+..++++ +.+|++++|+|+|||||||||++|+|+++| .+|.+.+++..+ ...+++++|...+
T Consensus 14 ~~l~~isl~--i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~ 84 (201)
T cd03231 14 ALFSGLSFT--LAAGEALQVTGPNGSGKTTLLRILAGLSPP--LAGRVLLNGGPLDFQRDSIARGLLYLGHAPGI 84 (201)
T ss_pred eeeccceEE--EcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEecccccHHhhhheEEecccccc
Confidence 356666666 999999999999999999999999999985 455555554432 3456777776443
No 198
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.46 E-value=1.5e-07 Score=103.78 Aligned_cols=66 Identities=20% Similarity=0.199 Sum_probs=49.5
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCC---CcccccCccccc----------ccccceeeecCc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTP---LSVIKGPVTLII----------KDSIRDCFVTGK 488 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~---~SGii~wdgeEL----------rdsIr~VFQTGk 488 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+.++.+ .+|.+.+++..+ ...++++||...
T Consensus 19 ~~l~~vs~~--i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 96 (252)
T PRK14255 19 EALKGIDLD--FNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPN 96 (252)
T ss_pred eEEecceEE--EcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCc
Confidence 456667766 99999999999999999999999999975222 356666555432 346888888754
Q ss_pred c
Q psy5893 489 W 489 (1182)
Q Consensus 489 w 489 (1182)
.
T Consensus 97 ~ 97 (252)
T PRK14255 97 P 97 (252)
T ss_pred c
Confidence 3
No 199
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.46 E-value=1.4e-07 Score=104.02 Aligned_cols=67 Identities=18% Similarity=0.175 Sum_probs=50.2
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCC---CCcccccCccccc----------ccccceeeecCc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKT---PLSVIKGPVTLII----------KDSIRDCFVTGK 488 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~---~~SGii~wdgeEL----------rdsIr~VFQTGk 488 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|++++. +.+|.+.+++..+ +..++++||...
T Consensus 18 ~~l~~~sl~--i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~ 95 (251)
T PRK14251 18 EALHGISLD--FEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPT 95 (251)
T ss_pred eeeeeeeEE--EcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCc
Confidence 466677777 9999999999999999999999999998621 2456666655432 345778888754
Q ss_pred cc
Q psy5893 489 WK 490 (1182)
Q Consensus 489 w~ 490 (1182)
..
T Consensus 96 ~~ 97 (251)
T PRK14251 96 PF 97 (251)
T ss_pred cC
Confidence 43
No 200
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.46 E-value=1.5e-07 Score=108.22 Aligned_cols=62 Identities=13% Similarity=0.079 Sum_probs=49.1
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccc------------------------ccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTL------------------------IIK 477 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdge------------------------ELr 477 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++|+ +|.+.+++. .++
T Consensus 40 ~~L~~vsl~--i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~--~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (320)
T PRK13631 40 VALNNISYT--FEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK--YGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELR 115 (320)
T ss_pred cceeeeEEE--EcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCeEEECCEEcccccccccccccccccccchHHHHH
Confidence 467777777 9999999999999999999999999999954 444444332 234
Q ss_pred cccceeeecC
Q psy5893 478 DSIRDCFVTG 487 (1182)
Q Consensus 478 dsIr~VFQTG 487 (1182)
..++++||..
T Consensus 116 ~~ig~v~Q~~ 125 (320)
T PRK13631 116 RRVSMVFQFP 125 (320)
T ss_pred hcEEEEEECc
Confidence 5688999975
No 201
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.46 E-value=1.2e-07 Score=103.68 Aligned_cols=66 Identities=17% Similarity=0.042 Sum_probs=49.8
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc---------ccccceeeecCccc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII---------KDSIRDCFVTGKWK 490 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL---------rdsIr~VFQTGkw~ 490 (1182)
+..+..++++ +.+|++++|+|||||||||||++|+|+++|+ +|.+.+++..+ ...++++||.....
T Consensus 18 ~~~l~~vs~~--i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~--~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~ 92 (237)
T PRK11614 18 IQALHEVSLH--INQGEIVTLIGANGAGKTTLLGTLCGDPRAT--SGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVF 92 (237)
T ss_pred ceeeeeeEEE--EcCCcEEEEECCCCCCHHHHHHHHcCCCCCC--CceEEECCEecCCCCHHHHHHhCEEEeccCcccC
Confidence 3467777777 9999999999999999999999999999854 45555554432 33577778775433
No 202
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.46 E-value=1.3e-07 Score=104.38 Aligned_cols=66 Identities=18% Similarity=0.197 Sum_probs=50.1
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc---------ccccceeeecCcccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII---------KDSIRDCFVTGKWKA 491 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL---------rdsIr~VFQTGkw~~ 491 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++..+ ...+.++||......
T Consensus 19 ~~l~~is~~--i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 93 (255)
T PRK11300 19 LAVNNVNLE--VREQEIVSLIGPNGAGKTTVFNCLTGFYKP--TGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFR 93 (255)
T ss_pred EEEEeeeeE--EcCCeEEEEECCCCCCHHHHHHHHhCCcCC--CcceEEECCEECCCCCHHHHHhcCeEEeccCcccCC
Confidence 466777777 999999999999999999999999999985 456566655433 123666788765443
No 203
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.46 E-value=1e-07 Score=112.61 Aligned_cols=65 Identities=17% Similarity=0.078 Sum_probs=51.4
Q ss_pred cccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc------------ccccceeeecCccc
Q psy5893 423 HVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII------------KDSIRDCFVTGKWK 490 (1182)
Q Consensus 423 ~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL------------rdsIr~VFQTGkw~ 490 (1182)
++..++++ +++|++++|+|||||||||||++|+|+++| .+|.+.+++.++ +..++++||...++
T Consensus 43 ~L~~isl~--i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p--~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~ 118 (400)
T PRK10070 43 GVKDASLA--IEEGEIFVIMGLSGSGKSTMVRLLNRLIEP--TRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALM 118 (400)
T ss_pred EEEeEEEE--EcCCCEEEEECCCCchHHHHHHHHHcCCCC--CCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCC
Confidence 46666666 999999999999999999999999999994 556666665433 13689999986555
Q ss_pred c
Q psy5893 491 A 491 (1182)
Q Consensus 491 ~ 491 (1182)
.
T Consensus 119 ~ 119 (400)
T PRK10070 119 P 119 (400)
T ss_pred C
Confidence 3
No 204
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.46 E-value=1.3e-07 Score=114.78 Aligned_cols=67 Identities=15% Similarity=0.043 Sum_probs=53.3
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc---------ccccceeeecCccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII---------KDSIRDCFVTGKWK 490 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL---------rdsIr~VFQTGkw~ 490 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++|++.+|.+.+++..+ +..++++||...+.
T Consensus 19 ~il~~isl~--i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 94 (506)
T PRK13549 19 KALDNVSLK--VRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALV 94 (506)
T ss_pred EeecceeEE--EeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccC
Confidence 467777777 99999999999999999999999999998544567777766543 24588999986544
No 205
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.45 E-value=1.3e-07 Score=103.25 Aligned_cols=61 Identities=18% Similarity=-0.000 Sum_probs=46.2
Q ss_pred ccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccccc---cccceeeecCccc
Q psy5893 426 QVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIK---DSIRDCFVTGKWK 490 (1182)
Q Consensus 426 ~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeELr---dsIr~VFQTGkw~ 490 (1182)
.++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++..+. ...+++||...+.
T Consensus 3 ~is~~--i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~v~q~~~l~ 66 (230)
T TIGR01184 3 GVNLT--IQQGEFISLIGHSGCGKSTLLNLISGLAQP--TSGGVILEGKQITEPGPDRMVVFQNYSLL 66 (230)
T ss_pred ceeEE--EcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCCCChhheEEecCcccC
Confidence 34444 899999999999999999999999999984 5566666665442 1246778776544
No 206
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=98.45 E-value=1.4e-07 Score=105.27 Aligned_cols=67 Identities=21% Similarity=0.164 Sum_probs=50.5
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCC---CCcccccCccccc----------ccccceeeecCc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKT---PLSVIKGPVTLII----------KDSIRDCFVTGK 488 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~---~~SGii~wdgeEL----------rdsIr~VFQTGk 488 (1182)
..+..++++ +++|++++|+|||||||||||++|+|++.+. +.+|.+.|++..+ +..++++||...
T Consensus 24 ~il~~vsl~--i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 101 (264)
T PRK14243 24 LAVKNVWLD--IPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPN 101 (264)
T ss_pred EEeecceEE--EcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCc
Confidence 456667766 9999999999999999999999999997632 2456666665433 345788888754
Q ss_pred cc
Q psy5893 489 WK 490 (1182)
Q Consensus 489 w~ 490 (1182)
..
T Consensus 102 ~~ 103 (264)
T PRK14243 102 PF 103 (264)
T ss_pred cc
Confidence 33
No 207
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.45 E-value=1.3e-07 Score=98.45 Aligned_cols=67 Identities=21% Similarity=0.102 Sum_probs=52.1
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc------------ccccceeeecCc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII------------KDSIRDCFVTGK 488 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL------------rdsIr~VFQTGk 488 (1182)
.+.+..|++. +.+|+.++|||||||||||||-+|+||..|+ +|.+.+.+..+ ...++.+||...
T Consensus 23 l~IL~~V~L~--v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~s--sGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~ 98 (228)
T COG4181 23 LSILKGVELV--VKRGETVAIVGPSGSGKSTLLAVLAGLDDPS--SGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFH 98 (228)
T ss_pred eeEeecceEE--ecCCceEEEEcCCCCcHHhHHHHHhcCCCCC--CceEEEcCcchhhcCHHHHHHhhccceeEEEEeee
Confidence 3456677777 9999999999999999999999999999954 44444444322 257999999986
Q ss_pred ccc
Q psy5893 489 WKA 491 (1182)
Q Consensus 489 w~~ 491 (1182)
+-.
T Consensus 99 Lip 101 (228)
T COG4181 99 LIP 101 (228)
T ss_pred ccc
Confidence 643
No 208
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=98.45 E-value=1.6e-07 Score=115.47 Aligned_cols=89 Identities=20% Similarity=0.080 Sum_probs=69.1
Q ss_pred ceeceeeeecccccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcc--------cccccc
Q psy5893 408 ERKFRRKEDIQAKKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVT--------LIIKDS 479 (1182)
Q Consensus 408 ~~~~~~~~~~~~~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdg--------eELrds 479 (1182)
+.+-++...|...+..+..++++ +++|+.+|||||||||||||+++|+|++.|+ +|.+.+++ ..++..
T Consensus 329 I~f~~vsf~y~~~~~vl~~is~~--i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~--~G~I~idg~dI~~i~~~~lr~~ 404 (567)
T COG1132 329 IEFENVSFSYPGKKPVLKDISFS--IEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT--SGEILIDGIDIRDISLDSLRKR 404 (567)
T ss_pred EEEEEEEEEcCCCCccccCceEE--EcCCCEEEEECCCCCCHHHHHHHHhccCCCC--CCeEEECCEehhhcCHHHHHHh
Confidence 34556666666556678888888 9999999999999999999999999999954 44444444 345689
Q ss_pred cceeeecCcccccchHHHhhh
Q psy5893 480 IRDCFVTGKWKASEDASELLR 500 (1182)
Q Consensus 480 Ir~VFQTGkw~~~~~~~~ll~ 500 (1182)
|+.++|+..++.+.-.+++.-
T Consensus 405 I~~V~Qd~~LF~~TI~~NI~~ 425 (567)
T COG1132 405 IGIVSQDPLLFSGTIRENIAL 425 (567)
T ss_pred ccEEcccceeecccHHHHHhc
Confidence 999999998887655666543
No 209
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.45 E-value=1.2e-07 Score=99.60 Aligned_cols=64 Identities=23% Similarity=0.169 Sum_probs=48.1
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccc----------cccccceeeecCcc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLI----------IKDSIRDCFVTGKW 489 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeE----------LrdsIr~VFQTGkw 489 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++++ +|.+.+++.. ....++++||...+
T Consensus 14 ~~l~~i~~~--i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 87 (178)
T cd03229 14 TVLNDVSLN--IEAGEIVALLGPSGSGKSTLLRCIAGLEEPD--SGSILIDGEDLTDLEDELPPLRRRIGMVFQDFAL 87 (178)
T ss_pred EEEeeeeEE--EcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEEccccchhHHHHhhcEEEEecCCcc
Confidence 456677777 9999999999999999999999999999854 4444443332 23457777776443
No 210
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.45 E-value=1.8e-07 Score=103.42 Aligned_cols=67 Identities=25% Similarity=0.264 Sum_probs=50.9
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCC---CcccccCccccc----------ccccceeeecCc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTP---LSVIKGPVTLII----------KDSIRDCFVTGK 488 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~---~SGii~wdgeEL----------rdsIr~VFQTGk 488 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+..+.| .+|.+.+++..+ +..++++||...
T Consensus 20 ~~l~~vs~~--i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 97 (253)
T PRK14261 20 HALYDITIS--IPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPN 97 (253)
T ss_pred eeeeeeEEE--ECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCc
Confidence 466777777 99999999999999999999999999976433 356666655432 345788888865
Q ss_pred cc
Q psy5893 489 WK 490 (1182)
Q Consensus 489 w~ 490 (1182)
+.
T Consensus 98 ~~ 99 (253)
T PRK14261 98 PF 99 (253)
T ss_pred cC
Confidence 44
No 211
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=98.45 E-value=1.3e-07 Score=119.20 Aligned_cols=87 Identities=16% Similarity=-0.013 Sum_probs=66.3
Q ss_pred eeceeeeecccccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccc--------cccccc
Q psy5893 409 RKFRRKEDIQAKKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTL--------IIKDSI 480 (1182)
Q Consensus 409 ~~~~~~~~~~~~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdge--------ELrdsI 480 (1182)
.+-.+...|...+..+..++++ +++|+.++|+||||||||||+++|+|++.| .+|.+.+++. .++..|
T Consensus 475 ~~~~vsf~y~~~~~iL~~isl~--i~~G~~vaIvG~SGsGKSTLlklL~gl~~p--~~G~I~idg~~i~~~~~~~lr~~i 550 (708)
T TIGR01193 475 VINDVSYSYGYGSNILSDISLT--IKMNSKTTIVGMSGSGKSTLAKLLVGFFQA--RSGEILLNGFSLKDIDRHTLRQFI 550 (708)
T ss_pred EEEEEEEEcCCCCcceeceeEE--ECCCCEEEEECCCCCCHHHHHHHHhccCCC--CCcEEEECCEEHHHcCHHHHHHhe
Confidence 3445555554344567777777 999999999999999999999999999995 4555555544 456789
Q ss_pred ceeeecCcccccchHHHhh
Q psy5893 481 RDCFVTGKWKASEDASELL 499 (1182)
Q Consensus 481 r~VFQTGkw~~~~~~~~ll 499 (1182)
++++|+..++.+.-.++|.
T Consensus 551 ~~v~Q~~~lf~gTI~eNi~ 569 (708)
T TIGR01193 551 NYLPQEPYIFSGSILENLL 569 (708)
T ss_pred EEEecCceehhHHHHHHHh
Confidence 9999999888765555554
No 212
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.45 E-value=1.5e-07 Score=103.79 Aligned_cols=67 Identities=22% Similarity=0.193 Sum_probs=50.1
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHcc---CCCCCCcccccCccccc----------ccccceeeecCc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKN---FTKTPLSVIKGPVTLII----------KDSIRDCFVTGK 488 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl---~~~~~~SGii~wdgeEL----------rdsIr~VFQTGk 488 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+ +++.+.+|.+.+++..+ +..++++||...
T Consensus 17 ~~l~~vs~~--i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 94 (250)
T PRK14245 17 HALKGISME--IEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPN 94 (250)
T ss_pred eEEeeeeEE--EeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCc
Confidence 456777777 999999999999999999999999997 34333456666665433 235888888754
Q ss_pred cc
Q psy5893 489 WK 490 (1182)
Q Consensus 489 w~ 490 (1182)
..
T Consensus 95 ~~ 96 (250)
T PRK14245 95 PF 96 (250)
T ss_pred cC
Confidence 43
No 213
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.45 E-value=1.5e-07 Score=95.89 Aligned_cols=57 Identities=19% Similarity=0.086 Sum_probs=45.8
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccccccccceeee
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIKDSIRDCFV 485 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeELrdsIr~VFQ 485 (1182)
..+..+++. +.+|++++|+||||||||||+++|+|++++ .+|.+.+++. ..++++||
T Consensus 14 ~~l~~~~~~--~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~~~---~~i~~~~~ 70 (144)
T cd03221 14 LLLKDISLT--INPGDRIGLVGRNGAGKSTLLKLIAGELEP--DEGIVTWGST---VKIGYFEQ 70 (144)
T ss_pred eEEEeeEEE--ECCCCEEEEECCCCCCHHHHHHHHcCCCCC--CceEEEECCe---EEEEEEcc
Confidence 456667776 999999999999999999999999999984 5566666553 35666666
No 214
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=98.45 E-value=1.4e-07 Score=105.60 Aligned_cols=67 Identities=19% Similarity=0.149 Sum_probs=51.2
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCC---CCcccccCccccc----------ccccceeeecCc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKT---PLSVIKGPVTLII----------KDSIRDCFVTGK 488 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~---~~SGii~wdgeEL----------rdsIr~VFQTGk 488 (1182)
..+..++++ +.+|++++|+|+|||||||||++|+|++++. +.+|.+.|++..+ ...++++||...
T Consensus 38 ~il~~vsl~--i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 115 (271)
T PRK14238 38 HALKNINLD--IHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPN 115 (271)
T ss_pred ceeeeeEEE--EcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCc
Confidence 466777777 9999999999999999999999999998621 3456666665433 346888888865
Q ss_pred cc
Q psy5893 489 WK 490 (1182)
Q Consensus 489 w~ 490 (1182)
..
T Consensus 116 ~~ 117 (271)
T PRK14238 116 PF 117 (271)
T ss_pred cc
Confidence 44
No 215
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=98.45 E-value=1.3e-07 Score=108.97 Aligned_cols=64 Identities=16% Similarity=0.078 Sum_probs=51.5
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCC-CCcccccCcccccc------------cccceeeecC
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKT-PLSVIKGPVTLIIK------------DSIRDCFVTG 487 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~-~~SGii~wdgeELr------------dsIr~VFQTG 487 (1182)
.++..++++ +.+|++++|+|+||||||||+++|+|++++. ..+|.+.+++.++. ..|+++||+.
T Consensus 30 ~~l~~vsl~--i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~ 106 (330)
T PRK09473 30 TAVNDLNFS--LRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDP 106 (330)
T ss_pred EEEeeeEEE--EcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCc
Confidence 467777777 9999999999999999999999999999853 12677777665431 3689999985
No 216
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=98.44 E-value=1.6e-07 Score=102.46 Aligned_cols=61 Identities=20% Similarity=0.072 Sum_probs=46.9
Q ss_pred CCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc------ccccceeeecCccc
Q psy5893 428 DRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII------KDSIRDCFVTGKWK 490 (1182)
Q Consensus 428 d~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL------rdsIr~VFQTGkw~ 490 (1182)
+.++.+.+|++++|+|||||||||||++|+|+++| .+|.+.+++..+ ...++++||.....
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~ 83 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTP--ASGSLTLNGQDHTTTPPSRRPVSMLFQENNLF 83 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCeecCcCChhhccEEEEecccccc
Confidence 33444999999999999999999999999999985 456566665533 24578888876544
No 217
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=98.44 E-value=1.4e-07 Score=118.77 Aligned_cols=87 Identities=15% Similarity=0.003 Sum_probs=66.2
Q ss_pred eeceeeeeccc-ccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccc--------ccccc
Q psy5893 409 RKFRRKEDIQA-KKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTL--------IIKDS 479 (1182)
Q Consensus 409 ~~~~~~~~~~~-~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdge--------ELrds 479 (1182)
.+-.+...|.. .+..+..++++ +++|+.++||||||||||||+++|+|+++| .+|.+.+++. .++..
T Consensus 479 ~~~~vsf~y~~~~~~vL~~isl~--i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~~i~~~~~~~lr~~ 554 (710)
T TIGR03796 479 ELRNITFGYSPLEPPLIENFSLT--LQPGQRVALVGGSGSGKSTIAKLVAGLYQP--WSGEILFDGIPREEIPREVLANS 554 (710)
T ss_pred EEEEEEEecCCCCCCcccceeEE--EcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEeHHHCCHHHHHhh
Confidence 34455555543 24567777777 999999999999999999999999999995 4555555544 45678
Q ss_pred cceeeecCcccccchHHHhh
Q psy5893 480 IRDCFVTGKWKASEDASELL 499 (1182)
Q Consensus 480 Ir~VFQTGkw~~~~~~~~ll 499 (1182)
|++++|+..++.+.-.++|.
T Consensus 555 i~~v~Q~~~lf~gTi~eNi~ 574 (710)
T TIGR03796 555 VAMVDQDIFLFEGTVRDNLT 574 (710)
T ss_pred eeEEecCChhhhccHHHHhh
Confidence 99999999888665556654
No 218
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=98.44 E-value=1.6e-07 Score=110.79 Aligned_cols=81 Identities=20% Similarity=0.133 Sum_probs=68.3
Q ss_pred ccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCc------ccccCcccccccccceeeecCcccccc
Q psy5893 420 KKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLS------VIKGPVTLIIKDSIRDCFVTGKWKASE 493 (1182)
Q Consensus 420 ~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~S------Gii~wdgeELrdsIr~VFQTGkw~~~~ 493 (1182)
++..+..++|+ +.+|+.++||||||||||||.|+|.|..+|..|+ ....|+.+.+-..|++..|+-.++.+.
T Consensus 348 ~~pil~~isF~--l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GT 425 (580)
T COG4618 348 KKPILKGISFA--LQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGT 425 (580)
T ss_pred CCcceecceeE--ecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCc
Confidence 35567777777 9999999999999999999999999999966554 345688888889999999999999888
Q ss_pred hHHHhhhcC
Q psy5893 494 DASELLRLD 502 (1182)
Q Consensus 494 ~~~~ll~~~ 502 (1182)
-++++..-+
T Consensus 426 IaeNIaRf~ 434 (580)
T COG4618 426 IAENIARFG 434 (580)
T ss_pred HHHHHHhcc
Confidence 887776544
No 219
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.44 E-value=1.5e-07 Score=105.71 Aligned_cols=62 Identities=18% Similarity=0.133 Sum_probs=49.8
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc--------ccccceeeecC
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII--------KDSIRDCFVTG 487 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL--------rdsIr~VFQTG 487 (1182)
..+..++++ +.+|++++|+|+|||||||||++|+|+++| .+|.+.+++..+ +..++++||..
T Consensus 21 ~~l~~v~l~--i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~ 90 (277)
T PRK13642 21 NQLNGVSFS--ITKGEWVSIIGQNGSGKSTTARLIDGLFEE--FEGKVKIDGELLTAENVWNLRRKIGMVFQNP 90 (277)
T ss_pred eeeeeeEEE--EcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCCEEEECCEECCcCCHHHHhcceEEEEECH
Confidence 367777777 999999999999999999999999999994 555566655432 34688888875
No 220
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.44 E-value=1.2e-07 Score=103.96 Aligned_cols=60 Identities=20% Similarity=0.181 Sum_probs=46.3
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccc-------cccccceeee
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLI-------IKDSIRDCFV 485 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeE-------LrdsIr~VFQ 485 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.|.+.. ....++++|+
T Consensus 35 ~il~~vs~~--i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~i~~~~~ 101 (236)
T cd03267 35 EALKGISFT--IEKGEIVGFIGPNGAGKTTTLKILSGLLQP--TSGEVRVAGLVPWKRRKKFLRRIGVVFG 101 (236)
T ss_pred eeeeceeEE--EcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEccccchhhcccEEEEcC
Confidence 466677777 999999999999999999999999999985 45666665543 2335666663
No 221
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.44 E-value=1.5e-07 Score=103.75 Aligned_cols=67 Identities=16% Similarity=0.164 Sum_probs=51.2
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCC--CC-CCcccccCccccc----------ccccceeeecCc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFT--KT-PLSVIKGPVTLII----------KDSIRDCFVTGK 488 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~--~~-~~SGii~wdgeEL----------rdsIr~VFQTGk 488 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+.. +. +.+|.+.+.+..+ +..++++||...
T Consensus 19 ~~l~~is~~--i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 96 (251)
T PRK14244 19 QILFDINLD--IYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPN 96 (251)
T ss_pred eeeeeeEEE--EcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcc
Confidence 466777777 99999999999999999999999999986 22 3466666655432 346788888854
Q ss_pred cc
Q psy5893 489 WK 490 (1182)
Q Consensus 489 w~ 490 (1182)
..
T Consensus 97 ~~ 98 (251)
T PRK14244 97 PF 98 (251)
T ss_pred cc
Confidence 43
No 222
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.44 E-value=1.7e-07 Score=104.06 Aligned_cols=67 Identities=21% Similarity=0.197 Sum_probs=51.9
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCC-C--CcccccCccccc----------ccccceeeecCc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKT-P--LSVIKGPVTLII----------KDSIRDCFVTGK 488 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~-~--~SGii~wdgeEL----------rdsIr~VFQTGk 488 (1182)
..+..++++ +.+|++++|+|+|||||||||++|+|++++. + .+|.+.|++..+ +..++++||...
T Consensus 21 ~il~~isl~--i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 98 (259)
T PRK14260 21 KAIEGISMD--IYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPN 98 (259)
T ss_pred EeecceEEE--EcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccc
Confidence 456777777 9999999999999999999999999998853 2 367677665433 345888888865
Q ss_pred cc
Q psy5893 489 WK 490 (1182)
Q Consensus 489 w~ 490 (1182)
.+
T Consensus 99 l~ 100 (259)
T PRK14260 99 PF 100 (259)
T ss_pred cC
Confidence 44
No 223
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=98.44 E-value=1.8e-07 Score=101.22 Aligned_cols=64 Identities=23% Similarity=0.145 Sum_probs=48.2
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCc--cc--cc------------ccccceeee
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPV--TL--II------------KDSIRDCFV 485 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wd--ge--EL------------rdsIr~VFQ 485 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++|+ +|.+.|+ +. ++ ...++++||
T Consensus 22 ~il~~vs~~--i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~--~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q 97 (224)
T TIGR02324 22 PVLKNVSLT--VNAGECVALSGPSGAGKSTLLKSLYANYLPD--SGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQ 97 (224)
T ss_pred EEEecceEE--ECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCeEEEecCCCccchhhcCHHHHHHHHhcceEEEec
Confidence 456666666 9999999999999999999999999999854 4555554 21 11 235788888
Q ss_pred cCcc
Q psy5893 486 TGKW 489 (1182)
Q Consensus 486 TGkw 489 (1182)
....
T Consensus 98 ~~~~ 101 (224)
T TIGR02324 98 FLRV 101 (224)
T ss_pred cccc
Confidence 7544
No 224
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.43 E-value=1.3e-07 Score=111.86 Aligned_cols=64 Identities=19% Similarity=0.152 Sum_probs=50.7
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccc--------ccccccceeeecCc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTL--------IIKDSIRDCFVTGK 488 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdge--------ELrdsIr~VFQTGk 488 (1182)
+..+..++++ +++|++++|+|||||||||||++|+|+++| .+|.+.+.+. +++..|++++|...
T Consensus 16 ~~vL~~vs~~--i~~Geiv~liGpNGaGKSTLLk~LaGll~p--~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~ 87 (402)
T PRK09536 16 TTVLDGVDLS--VREGSLVGLVGPNGAGKTTLLRAINGTLTP--TAGTVLVAGDDVEALSARAASRRVASVPQDTS 87 (402)
T ss_pred EEEEEeeEEE--ECCCCEEEEECCCCchHHHHHHHHhcCCCC--CCcEEEECCEEcCcCCHHHHhcceEEEccCCC
Confidence 3567777777 999999999999999999999999999995 4555555543 33456888988754
No 225
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.43 E-value=1.6e-07 Score=104.16 Aligned_cols=65 Identities=14% Similarity=0.042 Sum_probs=50.8
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc--------ccccceeeecCccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII--------KDSIRDCFVTGKWK 490 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL--------rdsIr~VFQTGkw~ 490 (1182)
..+..++++ +.+|++++|+|+|||||||||++|+|++++ .+|.+.+++..+ ...++++||...+.
T Consensus 35 ~il~~isl~--i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~ 107 (257)
T cd03288 35 PVLKHVKAY--IKPGQKVGICGRTGSGKSSLSLAFFRMVDI--FDGKIVIDGIDISKLPLHTLRSRLSIILQDPILF 107 (257)
T ss_pred cceeEEEEE--EcCCCEEEEECCCCCCHHHHHHHHHcccCC--CCCeEEECCEEhhhCCHHHHhhhEEEECCCCccc
Confidence 466777777 999999999999999999999999999984 455555554432 45688888876443
No 226
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.43 E-value=1.6e-07 Score=105.53 Aligned_cols=65 Identities=17% Similarity=0.060 Sum_probs=49.4
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCC------cccccCccccc--------ccccceeeecC
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPL------SVIKGPVTLII--------KDSIRDCFVTG 487 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~------SGii~wdgeEL--------rdsIr~VFQTG 487 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++|+.+ +|.+.+++..+ ...++++||..
T Consensus 15 ~il~~vsl~--i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~ 92 (272)
T PRK13547 15 AILRDLSLR--IEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAA 92 (272)
T ss_pred eEEecceEE--EcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccC
Confidence 456677776 999999999999999999999999999985410 56666665433 23467788875
Q ss_pred c
Q psy5893 488 K 488 (1182)
Q Consensus 488 k 488 (1182)
.
T Consensus 93 ~ 93 (272)
T PRK13547 93 Q 93 (272)
T ss_pred C
Confidence 3
No 227
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.43 E-value=1.5e-07 Score=101.70 Aligned_cols=64 Identities=16% Similarity=-0.068 Sum_probs=49.4
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc-----ccccceeeecCcc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII-----KDSIRDCFVTGKW 489 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL-----rdsIr~VFQTGkw 489 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++..+ ...+++++|...+
T Consensus 25 ~il~~vs~~--i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~ 93 (214)
T PRK13543 25 PVFGPLDFH--VDAGEALLVQGDNGAGKTTLLRVLAGLLHV--ESGQIQIDGKTATRGDRSRFMAYLGHLPGL 93 (214)
T ss_pred eeeecceEE--ECCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CCeeEEECCEEccchhhhhceEEeecCccc
Confidence 466777777 999999999999999999999999999995 456566665433 2347777776443
No 228
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.43 E-value=1.9e-07 Score=100.50 Aligned_cols=63 Identities=21% Similarity=0.158 Sum_probs=48.5
Q ss_pred cccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc------ccccceeeecCcccc
Q psy5893 425 PQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII------KDSIRDCFVTGKWKA 491 (1182)
Q Consensus 425 ~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL------rdsIr~VFQTGkw~~ 491 (1182)
..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++..+ ...++++||...+..
T Consensus 15 ~~~s~~--i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~ 83 (213)
T TIGR01277 15 MEFDLN--VADGEIVAIMGPSGAGKSTLLNLIAGFIEP--ASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFA 83 (213)
T ss_pred eeeEEE--EeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEcccCChhccceEEEeccCccCC
Confidence 344555 999999999999999999999999999995 456566655433 345888888865543
No 229
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.43 E-value=1.9e-07 Score=115.27 Aligned_cols=86 Identities=15% Similarity=0.052 Sum_probs=64.1
Q ss_pred eceeeeecccccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccc--------ccccccc
Q psy5893 410 KFRRKEDIQAKKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTL--------IIKDSIR 481 (1182)
Q Consensus 410 ~~~~~~~~~~~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdge--------ELrdsIr 481 (1182)
+-.+...+...+..+.+++++ +++|+.++|+|+||||||||+++|+|+++|+ +|.+.+++. .+++.|+
T Consensus 343 ~~~v~f~y~~~~~il~~i~l~--i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~--~G~I~idg~~i~~~~~~~l~~~i~ 418 (592)
T PRK10790 343 IDNVSFAYRDDNLVLQNINLS--VPSRGFVALVGHTGSGKSTLASLLMGYYPLT--EGEIRLDGRPLSSLSHSVLRQGVA 418 (592)
T ss_pred EEEEEEEeCCCCceeeceeEE--EcCCCEEEEECCCCCCHHHHHHHHhcccCCC--CceEEECCEEhhhCCHHHHHhheE
Confidence 334444443334467777777 9999999999999999999999999999954 455555544 4567899
Q ss_pred eeeecCcccccchHHHhh
Q psy5893 482 DCFVTGKWKASEDASELL 499 (1182)
Q Consensus 482 ~VFQTGkw~~~~~~~~ll 499 (1182)
+++|+..++.+.-.++|.
T Consensus 419 ~v~Q~~~lF~~Ti~~NI~ 436 (592)
T PRK10790 419 MVQQDPVVLADTFLANVT 436 (592)
T ss_pred EEccCCccccchHHHHHH
Confidence 999999888765555554
No 230
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.42 E-value=2e-07 Score=104.01 Aligned_cols=68 Identities=22% Similarity=0.155 Sum_probs=51.0
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCC--C-CCCcccccCccccc----------ccccceeeecC
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFT--K-TPLSVIKGPVTLII----------KDSIRDCFVTG 487 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~--~-~~~SGii~wdgeEL----------rdsIr~VFQTG 487 (1182)
+..+..++++ +.+|++++|+|||||||||||++|+|+.. + .+.+|.+.+++..+ +..++++||..
T Consensus 34 ~~il~~vsl~--i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 111 (268)
T PRK14248 34 KRAVNDISMD--IEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKP 111 (268)
T ss_pred ceeeeceEEE--EcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCC
Confidence 3467777777 99999999999999999999999999864 2 13456666655432 34688888876
Q ss_pred ccc
Q psy5893 488 KWK 490 (1182)
Q Consensus 488 kw~ 490 (1182)
...
T Consensus 112 ~~~ 114 (268)
T PRK14248 112 NPF 114 (268)
T ss_pred ccC
Confidence 443
No 231
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.42 E-value=1.9e-07 Score=104.04 Aligned_cols=67 Identities=16% Similarity=0.082 Sum_probs=51.9
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCC---CCcccccCccccc----------ccccceeeecCc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKT---PLSVIKGPVTLII----------KDSIRDCFVTGK 488 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~---~~SGii~wdgeEL----------rdsIr~VFQTGk 488 (1182)
..+..++++ +++|++++|+|||||||||||++|+|+++|. +.+|.+.+++.++ +..++++||...
T Consensus 22 ~~l~~vs~~--i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 99 (261)
T PRK14263 22 MAVRDSHVP--IRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPN 99 (261)
T ss_pred EEEeeeEEE--EcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCc
Confidence 456677777 9999999999999999999999999999752 2456666665433 345888888865
Q ss_pred cc
Q psy5893 489 WK 490 (1182)
Q Consensus 489 w~ 490 (1182)
+.
T Consensus 100 ~~ 101 (261)
T PRK14263 100 PF 101 (261)
T ss_pred cc
Confidence 54
No 232
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=98.42 E-value=2.3e-07 Score=113.02 Aligned_cols=86 Identities=23% Similarity=0.118 Sum_probs=63.8
Q ss_pred eceeeeecccc-cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccc--------cccccc
Q psy5893 410 KFRRKEDIQAK-KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTL--------IIKDSI 480 (1182)
Q Consensus 410 ~~~~~~~~~~~-k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdge--------ELrdsI 480 (1182)
+-.+...+... +..+..++++ +++|+.++|+||||||||||+++|+|+++|+ +|.+.+++. .++..+
T Consensus 323 ~~~v~f~y~~~~~~il~~i~l~--i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~--~G~I~~~g~~i~~~~~~~lr~~i 398 (529)
T TIGR02857 323 FSGLSVAYPGRRAPALRPVSFT--VPPGERVALVGPSGAGKSTLLNLLLGFVDPT--EGSIAVNGVPLADADADSWRDQI 398 (529)
T ss_pred EEEEEEECCCCCcccccceeEE--ECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CcEEEECCEehhhCCHHHHHhhe
Confidence 33444444332 3467777777 9999999999999999999999999999954 455555444 445679
Q ss_pred ceeeecCcccccchHHHhh
Q psy5893 481 RDCFVTGKWKASEDASELL 499 (1182)
Q Consensus 481 r~VFQTGkw~~~~~~~~ll 499 (1182)
++++|+..++.+.-.++|.
T Consensus 399 ~~v~Q~~~lf~~ti~~Ni~ 417 (529)
T TIGR02857 399 AWVPQHPFLFAGTIAENIR 417 (529)
T ss_pred EEEcCCCcccCcCHHHHHh
Confidence 9999999888665556554
No 233
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.42 E-value=1.8e-07 Score=99.40 Aligned_cols=56 Identities=18% Similarity=0.023 Sum_probs=43.1
Q ss_pred cCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccccc----cccceeeec
Q psy5893 427 VDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIK----DSIRDCFVT 486 (1182)
Q Consensus 427 vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeELr----dsIr~VFQT 486 (1182)
++++ +++|++++|+|||||||||||++|+|+.+| .+|.+.+++..+. ..+++++|.
T Consensus 19 vs~~--i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (195)
T PRK13541 19 LSIT--FLPSAITYIKGANGCGKSSLLRMIAGIMQP--SSGNIYYKNCNINNIAKPYCTYIGHN 78 (195)
T ss_pred EEEE--EcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCcccChhhhhhEEeccCC
Confidence 6665 999999999999999999999999999984 4566666665442 234555554
No 234
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.42 E-value=2.1e-07 Score=104.49 Aligned_cols=67 Identities=22% Similarity=0.242 Sum_probs=51.2
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCC---CcccccCccccc----------ccccceeeecCc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTP---LSVIKGPVTLII----------KDSIRDCFVTGK 488 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~---~SGii~wdgeEL----------rdsIr~VFQTGk 488 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|++.+.+ .+|.+.+++..+ +..|+++||...
T Consensus 34 ~~l~~vs~~--i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~ 111 (274)
T PRK14265 34 LALVDVHLK--IPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPN 111 (274)
T ss_pred EEEeeeeeE--EcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCc
Confidence 456677777 99999999999999999999999999986433 356666665433 346788888764
Q ss_pred cc
Q psy5893 489 WK 490 (1182)
Q Consensus 489 w~ 490 (1182)
..
T Consensus 112 l~ 113 (274)
T PRK14265 112 PF 113 (274)
T ss_pred cc
Confidence 43
No 235
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.42 E-value=2.6e-07 Score=98.81 Aligned_cols=66 Identities=21% Similarity=0.017 Sum_probs=48.7
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc---------ccccceeeecCcc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII---------KDSIRDCFVTGKW 489 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL---------rdsIr~VFQTGkw 489 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+....|.+|.+.+++..+ +..++++||....
T Consensus 14 ~~l~~is~~--i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~ 88 (200)
T cd03217 14 EILKGVNLT--IKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPE 88 (200)
T ss_pred EeeeccceE--ECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhh
Confidence 456666666 99999999999999999999999999952124556666665433 2237778887543
No 236
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.41 E-value=1.2e-07 Score=104.78 Aligned_cols=42 Identities=24% Similarity=0.195 Sum_probs=35.5
Q ss_pred cccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCc
Q psy5893 425 PQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLS 466 (1182)
Q Consensus 425 ~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~S 466 (1182)
.+.|+++.+++|+++++||||||||||+|+||+|++.|+.|.
T Consensus 39 AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~ 80 (325)
T COG4586 39 AVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGK 80 (325)
T ss_pred hhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCe
Confidence 344555669999999999999999999999999999955443
No 237
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=98.41 E-value=2.5e-07 Score=101.59 Aligned_cols=65 Identities=20% Similarity=0.062 Sum_probs=48.0
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccccc---------cccceeeecCc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIK---------DSIRDCFVTGK 488 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeELr---------dsIr~VFQTGk 488 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++..+.+|.+.|++..+. ..++++||...
T Consensus 15 ~~l~~isl~--i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~ 88 (248)
T PRK09580 15 AILRGLNLE--VRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPV 88 (248)
T ss_pred eeeecceeE--EcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCch
Confidence 456667766 999999999999999999999999999531145566667665432 24666677643
No 238
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=2.5e-07 Score=111.21 Aligned_cols=85 Identities=16% Similarity=0.057 Sum_probs=66.2
Q ss_pred eeeeecccccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccc--------cccccccee
Q psy5893 412 RRKEDIQAKKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTL--------IIKDSIRDC 483 (1182)
Q Consensus 412 ~~~~~~~~~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdge--------ELrdsIr~V 483 (1182)
++...+..++..+.+++++ +++|+.++|||+||||||||+++|+|+.+| ..|.+.|++. .++..+.++
T Consensus 325 ~l~~~y~~g~~~l~~l~~t--~~~g~~talvG~SGaGKSTLl~lL~G~~~~--~~G~I~vng~~l~~l~~~~~~k~i~~v 400 (559)
T COG4988 325 NLSFRYPDGKPALSDLNLT--IKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQGEIRVNGIDLRDLSPEAWRKQISWV 400 (559)
T ss_pred ceEEecCCCCcccCCceeE--ecCCcEEEEECCCCCCHHHHHHHHhCcCCC--CCceEEECCccccccCHHHHHhHeeee
Confidence 4444554455677778877 999999999999999999999999999994 5666666654 345779999
Q ss_pred eecCcccccchHHHhhh
Q psy5893 484 FVTGKWKASEDASELLR 500 (1182)
Q Consensus 484 FQTGkw~~~~~~~~ll~ 500 (1182)
.|.+..+.+.-.++|+-
T Consensus 401 ~Q~p~lf~gTireNi~l 417 (559)
T COG4988 401 SQNPYLFAGTIRENILL 417 (559)
T ss_pred CCCCccccccHHHHhhc
Confidence 99998887665566543
No 239
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.41 E-value=2.2e-07 Score=105.00 Aligned_cols=67 Identities=21% Similarity=0.219 Sum_probs=51.4
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCC---CCCcccccCccccc----------ccccceeeecCc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTK---TPLSVIKGPVTLII----------KDSIRDCFVTGK 488 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~---~~~SGii~wdgeEL----------rdsIr~VFQTGk 488 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|++++ .+.+|.+.|++..+ +..++++||...
T Consensus 53 ~il~~is~~--i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~ 130 (285)
T PRK14254 53 QALDDVSMD--IPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPN 130 (285)
T ss_pred eeEeeeEEE--EcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCc
Confidence 466777777 999999999999999999999999999863 13456666655433 346788888764
Q ss_pred cc
Q psy5893 489 WK 490 (1182)
Q Consensus 489 w~ 490 (1182)
..
T Consensus 131 l~ 132 (285)
T PRK14254 131 PF 132 (285)
T ss_pred cC
Confidence 43
No 240
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.41 E-value=1.7e-07 Score=99.05 Aligned_cols=50 Identities=18% Similarity=0.116 Sum_probs=40.8
Q ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccccccccceeeec
Q psy5893 431 PLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIKDSIRDCFVT 486 (1182)
Q Consensus 431 ~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeELrdsIr~VFQT 486 (1182)
+.+++|++++|+|||||||||||++|+|+++ |.+|.+.|++. .+++++|.
T Consensus 20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~----~i~~~~q~ 69 (177)
T cd03222 20 GVVKEGEVIGIVGPNGTGKTTAVKILAGQLI--PNGDNDEWDGI----TPVYKPQY 69 (177)
T ss_pred cEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCCcEEEECCE----EEEEEccc
Confidence 4589999999999999999999999999998 45666777654 25566654
No 241
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.41 E-value=2.2e-07 Score=114.43 Aligned_cols=86 Identities=14% Similarity=0.031 Sum_probs=63.9
Q ss_pred eceeeeecccc-cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccc--------cccccc
Q psy5893 410 KFRRKEDIQAK-KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTL--------IIKDSI 480 (1182)
Q Consensus 410 ~~~~~~~~~~~-k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdge--------ELrdsI 480 (1182)
+-.+...+... +..+.+++++ +++|++++|+||||||||||+++|+|+++|+ +|.+.+++. .++..|
T Consensus 341 ~~~v~f~y~~~~~~il~~i~~~--i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~--~G~I~i~g~~i~~~~~~~~r~~i 416 (574)
T PRK11160 341 LNNVSFTYPDQPQPVLKGLSLQ--IKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ--QGEILLNGQPIADYSEAALRQAI 416 (574)
T ss_pred EEEEEEECCCCCCcceecceEE--ECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CceEEECCEEhhhCCHHHHHhhe
Confidence 44455555332 3467777777 9999999999999999999999999999954 455555443 445679
Q ss_pred ceeeecCcccccchHHHhh
Q psy5893 481 RDCFVTGKWKASEDASELL 499 (1182)
Q Consensus 481 r~VFQTGkw~~~~~~~~ll 499 (1182)
++++|+..++.+.-++++.
T Consensus 417 ~~v~Q~~~lf~~ti~~Ni~ 435 (574)
T PRK11160 417 SVVSQRVHLFSATLRDNLL 435 (574)
T ss_pred eEEcccchhhcccHHHHhh
Confidence 9999998887665555553
No 242
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.41 E-value=2.3e-07 Score=114.19 Aligned_cols=86 Identities=13% Similarity=-0.003 Sum_probs=64.6
Q ss_pred eceeeeeccc-ccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccc--------cccccc
Q psy5893 410 KFRRKEDIQA-KKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTL--------IIKDSI 480 (1182)
Q Consensus 410 ~~~~~~~~~~-~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdge--------ELrdsI 480 (1182)
+-.+...+.. .+..+..++++ +++|+.++|+||||||||||+++|+|+++| .+|.+.+++. .+++.|
T Consensus 344 ~~~vsf~y~~~~~~il~~i~l~--i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i~~~~~~~~~~~i 419 (582)
T PRK11176 344 FRNVTFTYPGKEVPALRNINFK--IPAGKTVALVGRSGSGKSTIANLLTRFYDI--DEGEILLDGHDLRDYTLASLRNQV 419 (582)
T ss_pred EEEEEEecCCCCCccccCceEE--eCCCCEEEEECCCCCCHHHHHHHHHhccCC--CCceEEECCEEhhhcCHHHHHhhc
Confidence 3344444432 23467777777 999999999999999999999999999995 4455555544 446789
Q ss_pred ceeeecCcccccchHHHhh
Q psy5893 481 RDCFVTGKWKASEDASELL 499 (1182)
Q Consensus 481 r~VFQTGkw~~~~~~~~ll 499 (1182)
++++|+..++.+.-.++|.
T Consensus 420 ~~v~Q~~~lf~~Ti~~Ni~ 438 (582)
T PRK11176 420 ALVSQNVHLFNDTIANNIA 438 (582)
T ss_pred eEEccCceeecchHHHHHh
Confidence 9999999888765566655
No 243
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=98.40 E-value=2.2e-07 Score=101.00 Aligned_cols=67 Identities=15% Similarity=0.051 Sum_probs=50.8
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCC---CCCCcccccCcccc-----cccccceeeecCcccc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFT---KTPLSVIKGPVTLI-----IKDSIRDCFVTGKWKA 491 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~---~~~~SGii~wdgeE-----LrdsIr~VFQTGkw~~ 491 (1182)
+..+..++++ +.+|++++|+|||||||||||++|+|+++ ++ +|.+.+.+.. .+..++++||...+..
T Consensus 20 ~~~l~~vsl~--i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~--~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~ 94 (226)
T cd03234 20 ARILNDVSLH--VESGQVMAILGSSGSGKTTLLDAISGRVEGGGTT--SGQILFNGQPRKPDQFQKCVAYVRQDDILLP 94 (226)
T ss_pred cccccCceEE--EcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCC--ceEEEECCEECChHHhcccEEEeCCCCccCc
Confidence 3456666666 99999999999999999999999999987 44 4445554432 3456888888865543
No 244
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=98.40 E-value=8.2e-08 Score=95.48 Aligned_cols=58 Identities=28% Similarity=0.165 Sum_probs=44.6
Q ss_pred ccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc--------ccccceeeecC
Q psy5893 426 QVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII--------KDSIRDCFVTG 487 (1182)
Q Consensus 426 ~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL--------rdsIr~VFQTG 487 (1182)
.+++. +++|++++|+|||||||||||++|+|++++ .+|.+.+++..+ +..+++++|..
T Consensus 3 ~v~~~--i~~g~~~~i~G~nGsGKStLl~~l~g~~~~--~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~ 68 (137)
T PF00005_consen 3 NVSLE--IKPGEIVAIVGPNGSGKSTLLKALAGLLPP--DSGSILINGKDISDIDIEELRRRIGYVPQDP 68 (137)
T ss_dssp EEEEE--EETTSEEEEEESTTSSHHHHHHHHTTSSHE--SEEEEEETTEEGTTSHHHHHHHTEEEEESSH
T ss_pred ceEEE--EcCCCEEEEEccCCCccccceeeecccccc--ccccccccccccccccccccccccccccccc
Confidence 34444 899999999999999999999999999984 556666655433 45667777763
No 245
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.40 E-value=2.1e-07 Score=112.63 Aligned_cols=67 Identities=16% Similarity=0.064 Sum_probs=53.0
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc---------ccccceeeecCccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII---------KDSIRDCFVTGKWK 490 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL---------rdsIr~VFQTGkw~ 490 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++|++.+|.+.+++..+ +..++++||...+.
T Consensus 15 ~il~~isl~--i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 90 (500)
T TIGR02633 15 KALDGIDLE--VRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLV 90 (500)
T ss_pred EeecceEEE--EeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccC
Confidence 466777777 99999999999999999999999999998533567777766543 24588999986543
No 246
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=98.40 E-value=1.8e-07 Score=109.89 Aligned_cols=65 Identities=12% Similarity=-0.026 Sum_probs=50.2
Q ss_pred cccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccc----c--------c----ccccceeeec
Q psy5893 423 HVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTL----I--------I----KDSIRDCFVT 486 (1182)
Q Consensus 423 ~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdge----E--------L----rdsIr~VFQT 486 (1182)
.+..++++ +++|++++|+|||||||||||++|+|+++| .+|.+.+++. . + ...|+++||.
T Consensus 39 ~l~~vsf~--i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p--~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~ 114 (382)
T TIGR03415 39 GVANASLD--IEEGEICVLMGLSGSGKSSLLRAVNGLNPV--SRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQK 114 (382)
T ss_pred EEEeeEEE--EcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECC
Confidence 45666666 999999999999999999999999999995 4555555542 1 1 1469999999
Q ss_pred Ccccc
Q psy5893 487 GKWKA 491 (1182)
Q Consensus 487 Gkw~~ 491 (1182)
..+..
T Consensus 115 ~~l~p 119 (382)
T TIGR03415 115 FALMP 119 (382)
T ss_pred CcCCC
Confidence 76553
No 247
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.40 E-value=2.9e-07 Score=101.60 Aligned_cols=67 Identities=19% Similarity=0.195 Sum_probs=51.1
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCC---CcccccCcccc----------cccccceeeecCc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTP---LSVIKGPVTLI----------IKDSIRDCFVTGK 488 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~---~SGii~wdgeE----------LrdsIr~VFQTGk 488 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++|.. ..|.+.+++.. ++..++++||...
T Consensus 18 ~il~~~s~~--i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 95 (251)
T PRK14249 18 QVLKNINMD--FPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPN 95 (251)
T ss_pred eEecceEEE--EcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCc
Confidence 466777777 99999999999999999999999999998642 13555554432 2456888898865
Q ss_pred cc
Q psy5893 489 WK 490 (1182)
Q Consensus 489 w~ 490 (1182)
+.
T Consensus 96 ~~ 97 (251)
T PRK14249 96 PF 97 (251)
T ss_pred cC
Confidence 44
No 248
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=98.40 E-value=2.6e-07 Score=114.07 Aligned_cols=86 Identities=22% Similarity=0.152 Sum_probs=64.0
Q ss_pred eceeeeecccccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcc--------cccccccc
Q psy5893 410 KFRRKEDIQAKKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVT--------LIIKDSIR 481 (1182)
Q Consensus 410 ~~~~~~~~~~~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdg--------eELrdsIr 481 (1182)
+-.+...+...+..+..++++ +++|++++|+|+||||||||+++|+|+++|+ +|.+.+++ ..++..|+
T Consensus 337 ~~~vsf~y~~~~~iL~~inl~--i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~--~G~I~i~g~~i~~~~~~~~r~~i~ 412 (588)
T PRK13657 337 FDDVSFSYDNSRQGVEDVSFE--AKPGQTVAIVGPTGAGKSTLINLLQRVFDPQ--SGRILIDGTDIRTVTRASLRRNIA 412 (588)
T ss_pred EEEEEEEeCCCCceecceeEE--ECCCCEEEEECCCCCCHHHHHHHHhcCcCCC--CCEEEECCEEhhhCCHHHHHhheE
Confidence 334444443233467777777 9999999999999999999999999999954 44444444 45567899
Q ss_pred eeeecCcccccchHHHhh
Q psy5893 482 DCFVTGKWKASEDASELL 499 (1182)
Q Consensus 482 ~VFQTGkw~~~~~~~~ll 499 (1182)
+++|+...+.+.-.++|.
T Consensus 413 ~v~Q~~~lf~~Ti~~Ni~ 430 (588)
T PRK13657 413 VVFQDAGLFNRSIEDNIR 430 (588)
T ss_pred EEecCcccccccHHHHHh
Confidence 999999888665555554
No 249
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=98.39 E-value=2.5e-07 Score=107.69 Aligned_cols=62 Identities=24% Similarity=0.150 Sum_probs=47.5
Q ss_pred ccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc------------ccccceeeecCcccc
Q psy5893 426 QVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII------------KDSIRDCFVTGKWKA 491 (1182)
Q Consensus 426 ~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL------------rdsIr~VFQTGkw~~ 491 (1182)
.++++ +.+|++++|+|||||||||||++|+|+++|+ +|.+.+++..+ +..++++||...++.
T Consensus 15 ~isl~--i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~--~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~ 88 (354)
T TIGR02142 15 DADFT--LPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD--EGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFP 88 (354)
T ss_pred EEEEE--ECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEECccCccccccchhhCCeEEEecCCccCC
Confidence 45555 9999999999999999999999999999954 45555544322 346889999866553
No 250
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.39 E-value=2.9e-07 Score=100.46 Aligned_cols=65 Identities=20% Similarity=0.069 Sum_probs=50.1
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc------ccccceeeecCccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII------KDSIRDCFVTGKWK 490 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL------rdsIr~VFQTGkw~ 490 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| ..|.+.+++..+ ...++++||.....
T Consensus 14 ~il~~i~~~--i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~--~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~ 84 (232)
T cd03300 14 VALDGVSLD--IKEGEFFTLLGPSGCGKTTLLRLIAGFETP--TSGEILLDGKDITNLPPHKRPVNTVFQNYALF 84 (232)
T ss_pred eeeccceEE--ECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcCcCChhhcceEEEecccccC
Confidence 456667777 999999999999999999999999999995 455555555433 34678888875443
No 251
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.39 E-value=2.2e-07 Score=112.58 Aligned_cols=65 Identities=18% Similarity=0.103 Sum_probs=50.9
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc---------ccccceeeecCccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII---------KDSIRDCFVTGKWK 490 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL---------rdsIr~VFQTGkw~ 490 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++..+ ...++++||...+.
T Consensus 18 ~~l~~is~~--i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 91 (501)
T PRK10762 18 KALSGAALN--VYPGRVMALVGENGAGKSTMMKVLTGIYTR--DAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLI 91 (501)
T ss_pred EEeeeeeEE--EcCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECCCCCHHHHHhCCEEEEEcchhcc
Confidence 456677777 999999999999999999999999999985 456566655432 24588999986544
No 252
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.39 E-value=2.8e-07 Score=113.25 Aligned_cols=63 Identities=17% Similarity=0.115 Sum_probs=50.7
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccccccccceeeecCccc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIKDSIRDCFVTGKWK 490 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeELrdsIr~VFQTGkw~ 490 (1182)
+..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.|... ..++++||.....
T Consensus 20 ~~il~~vs~~--i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p--~~G~i~~~~~---~~i~~v~Q~~~~~ 82 (556)
T PRK11819 20 KQILKDISLS--FFPGAKIGVLGLNGAGKSTLLRIMAGVDKE--FEGEARPAPG---IKVGYLPQEPQLD 82 (556)
T ss_pred CeeeeCceEE--ECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEecCC---CEEEEEecCCCCC
Confidence 4566777777 999999999999999999999999999984 4566665432 4689999986543
No 253
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.39 E-value=3e-07 Score=100.61 Aligned_cols=64 Identities=17% Similarity=0.017 Sum_probs=49.7
Q ss_pred cccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc------ccccceeeecCccc
Q psy5893 423 HVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII------KDSIRDCFVTGKWK 490 (1182)
Q Consensus 423 ~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL------rdsIr~VFQTGkw~ 490 (1182)
.+..++++ +.+|++++|+|||||||||||++|+|+++|+ .|.+.+++..+ ...++++||...+.
T Consensus 14 ~l~~is~~--i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~--~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~ 83 (235)
T cd03299 14 KLKNVSLE--VERGDYFVILGPTGSGKSVLLETIAGFIKPD--SGKILLNGKDITNLPPEKRDISYVPQNYALF 83 (235)
T ss_pred eeeeeEEE--EcCCcEEEEECCCCCCHHHHHHHHhCCcCCC--ceEEEECCEEcCcCChhHcCEEEEeecCccC
Confidence 45666666 9999999999999999999999999999954 45555554432 34688889886554
No 254
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=98.38 E-value=2.6e-07 Score=116.24 Aligned_cols=87 Identities=15% Similarity=0.033 Sum_probs=65.7
Q ss_pred eeceeeeeccc-ccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccc--------ccccc
Q psy5893 409 RKFRRKEDIQA-KKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTL--------IIKDS 479 (1182)
Q Consensus 409 ~~~~~~~~~~~-~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdge--------ELrds 479 (1182)
.+-.+...|.. .+..+..++++ +++|+.++|+||||||||||+++|+|+++| .+|.+.+++. .++..
T Consensus 465 ~~~~vsf~Y~~~~~~vL~~i~l~--i~~G~~iaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~~l~~~~~~~lr~~ 540 (694)
T TIGR03375 465 EFRNVSFAYPGQETPALDNVSLT--IRPGEKVAIIGRIGSGKSTLLKLLLGLYQP--TEGSVLLDGVDIRQIDPADLRRN 540 (694)
T ss_pred EEEEEEEEeCCCCccceeeeeEE--ECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEEhhhCCHHHHHhc
Confidence 34455555532 23467777777 999999999999999999999999999995 4555555543 45678
Q ss_pred cceeeecCcccccchHHHhh
Q psy5893 480 IRDCFVTGKWKASEDASELL 499 (1182)
Q Consensus 480 Ir~VFQTGkw~~~~~~~~ll 499 (1182)
|++++|+..++.+.-.++|.
T Consensus 541 i~~v~Q~~~lf~~TI~eNi~ 560 (694)
T TIGR03375 541 IGYVPQDPRLFYGTLRDNIA 560 (694)
T ss_pred cEEECCChhhhhhhHHHHHh
Confidence 99999998888665556554
No 255
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=98.38 E-value=2.8e-07 Score=100.21 Aligned_cols=56 Identities=14% Similarity=0.110 Sum_probs=45.4
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc---ccccceeeecCcc
Q psy5893 432 LEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII---KDSIRDCFVTGKW 489 (1182)
Q Consensus 432 ~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL---rdsIr~VFQTGkw 489 (1182)
.+.+|++++|+|||||||||||++|+|++++ .+|.+.+++..+ ...++++||...+
T Consensus 2 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~i~~v~q~~~~ 60 (223)
T TIGR03771 2 SADKGELLGLLGPNGAGKTTLLRAILGLIPP--AKGTVKVAGASPGKGWRHIGYVPQRHEF 60 (223)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCccchHhhCcEEEecccccc
Confidence 3789999999999999999999999999984 556677776543 3468888887543
No 256
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.38 E-value=2.8e-07 Score=102.70 Aligned_cols=67 Identities=19% Similarity=0.195 Sum_probs=50.7
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCC---CcccccCcccc------------cccccceeeec
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTP---LSVIKGPVTLI------------IKDSIRDCFVT 486 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~---~SGii~wdgeE------------LrdsIr~VFQT 486 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+..|.+ .+|.+.+++.. ++..++++||.
T Consensus 30 ~vl~~vs~~--i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~ 107 (265)
T PRK14252 30 QALKNINMM--VHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQK 107 (265)
T ss_pred eeeeeeEEE--EcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccC
Confidence 467777777 99999999999999999999999999987543 35666554322 23457888887
Q ss_pred Cccc
Q psy5893 487 GKWK 490 (1182)
Q Consensus 487 Gkw~ 490 (1182)
....
T Consensus 108 ~~~~ 111 (265)
T PRK14252 108 PNPF 111 (265)
T ss_pred CcCC
Confidence 5433
No 257
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.38 E-value=2.2e-07 Score=111.83 Aligned_cols=64 Identities=22% Similarity=0.066 Sum_probs=51.1
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccc----------cccccceeeecCc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLI----------IKDSIRDCFVTGK 488 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeE----------LrdsIr~VFQTGk 488 (1182)
.+++.+|++. +.+|+++||||+||||||||.|+|+||.+| .+|.+.+.+.+ ++..+.++||+..
T Consensus 304 ~~Av~~VSf~--l~~GE~lglVGeSGsGKSTlar~i~gL~~P--~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~ 377 (539)
T COG1123 304 VKAVDDVSFD--LREGETLGLVGESGSGKSTLARILAGLLPP--SSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPY 377 (539)
T ss_pred eeeeeeeeeE--ecCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEEeCcccccccchhhhhhhheEEEEeCcc
Confidence 3566666666 999999999999999999999999999995 44555554433 4568999999964
No 258
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.38 E-value=1.8e-07 Score=102.32 Aligned_cols=50 Identities=16% Similarity=0.101 Sum_probs=40.9
Q ss_pred ccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcc
Q psy5893 420 KKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVT 473 (1182)
Q Consensus 420 ~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdg 473 (1182)
..+++.+++++ +.+|+.+||||+|||||||||++|+|.++| .+|.+..++
T Consensus 39 ~~~aL~disf~--i~~Ge~vGiiG~NGaGKSTLlkliaGi~~P--t~G~v~v~G 88 (249)
T COG1134 39 EFWALKDISFE--IYKGERVGIIGHNGAGKSTLLKLIAGIYKP--TSGKVKVTG 88 (249)
T ss_pred eEEEecCceEE--EeCCCEEEEECCCCCcHHHHHHHHhCccCC--CCceEEEcc
Confidence 34567777777 999999999999999999999999999995 455554443
No 259
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=98.38 E-value=2.1e-07 Score=108.30 Aligned_cols=62 Identities=16% Similarity=0.079 Sum_probs=47.2
Q ss_pred CCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccc------------cccccceeeecCcccc
Q psy5893 428 DRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLI------------IKDSIRDCFVTGKWKA 491 (1182)
Q Consensus 428 d~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeE------------LrdsIr~VFQTGkw~~ 491 (1182)
+.++.+.+|++++|+|||||||||||++|+|+++|+ +|.+.+++.. ....++++||...++.
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~--~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~ 89 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ--KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFP 89 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEEccccccccccchhhCCEEEEcCCcccCC
Confidence 344449999999999999999999999999999854 4555554432 2356889999875543
No 260
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=98.37 E-value=2.2e-07 Score=100.62 Aligned_cols=42 Identities=19% Similarity=0.090 Sum_probs=35.5
Q ss_pred ccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccc
Q psy5893 424 VPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIK 469 (1182)
Q Consensus 424 i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii 469 (1182)
+..++++ +++|++++|+|||||||||||++|+|+++|+ +|.+
T Consensus 3 l~~vs~~--i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~--sG~i 44 (213)
T PRK15177 3 LDKTDFV--MGYHEHIGILAAPGSGKTTLTRLLCGLDAPD--EGDF 44 (213)
T ss_pred eeeeeEE--EcCCCEEEEECCCCCCHHHHHHHHhCCccCC--CCCE
Confidence 4455666 9999999999999999999999999999854 4544
No 261
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.37 E-value=2.5e-07 Score=111.71 Aligned_cols=62 Identities=21% Similarity=0.113 Sum_probs=46.9
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc--------ccccceeeecC
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII--------KDSIRDCFVTG 487 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL--------rdsIr~VFQTG 487 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++|+ +|.+.+.+..+ ...++++||..
T Consensus 17 ~il~~vsl~--i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~--~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~ 86 (490)
T PRK10938 17 KTLQLPSLT--LNAGDSWAFVGANGSGKSALARALAGELPLL--SGERQSQFSHITRLSFEQLQKLVSDEWQRN 86 (490)
T ss_pred eecccceEE--EcCCCEEEEECCCCCCHHHHHHHHhccCCCC--CceEEECCcccccCCHHHHHHHhceeccCc
Confidence 467777777 9999999999999999999999999999854 45454443322 23467777764
No 262
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.36 E-value=3.1e-07 Score=103.79 Aligned_cols=67 Identities=19% Similarity=0.146 Sum_probs=50.0
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCC--CC-CCcccccCcccc----------cccccceeeecCc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFT--KT-PLSVIKGPVTLI----------IKDSIRDCFVTGK 488 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~--~~-~~SGii~wdgeE----------LrdsIr~VFQTGk 488 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+.. |. +.+|.+.+++.. ++..|+++||...
T Consensus 53 ~il~~vsl~--i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 130 (286)
T PRK14275 53 EAVKKVNAD--ILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPN 130 (286)
T ss_pred EEEeeeEEE--EcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCC
Confidence 356667776 99999999999999999999999999864 21 245666665533 2346888888865
Q ss_pred cc
Q psy5893 489 WK 490 (1182)
Q Consensus 489 w~ 490 (1182)
+.
T Consensus 131 l~ 132 (286)
T PRK14275 131 PF 132 (286)
T ss_pred CC
Confidence 54
No 263
>KOG0057|consensus
Probab=98.36 E-value=2.9e-07 Score=109.51 Aligned_cols=81 Identities=22% Similarity=0.083 Sum_probs=66.8
Q ss_pred ceeceeeeecccccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccc--------ccccc
Q psy5893 408 ERKFRRKEDIQAKKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTL--------IIKDS 479 (1182)
Q Consensus 408 ~~~~~~~~~~~~~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdge--------ELrds 479 (1182)
+++-.+...+..+++.+..++++ |++|+-|||||+|||||||+||+|.+++. + +|.+.+++. .++..
T Consensus 352 I~F~dV~f~y~~k~~iL~gvsf~--I~kGekVaIvG~nGsGKSTilr~LlrF~d-~--sG~I~IdG~dik~~~~~SlR~~ 426 (591)
T KOG0057|consen 352 IEFDDVHFSYGPKRKVLKGVSFT--IPKGEKVAIVGSNGSGKSTILRLLLRFFD-Y--SGSILIDGQDIKEVSLESLRQS 426 (591)
T ss_pred EEEEeeEEEeCCCCceecceeEE--ecCCCEEEEECCCCCCHHHHHHHHHHHhc-c--CCcEEECCeeHhhhChHHhhhh
Confidence 44666777777787899999998 99999999999999999999999999998 3 455555544 45688
Q ss_pred cceeeecCcccccc
Q psy5893 480 IRDCFVTGKWKASE 493 (1182)
Q Consensus 480 Ir~VFQTGkw~~~~ 493 (1182)
|+.+.|++.++.+.
T Consensus 427 Ig~VPQd~~LFndT 440 (591)
T KOG0057|consen 427 IGVVPQDSVLFNDT 440 (591)
T ss_pred eeEeCCcccccchh
Confidence 99999999988543
No 264
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=98.36 E-value=3.6e-07 Score=100.74 Aligned_cols=52 Identities=17% Similarity=0.040 Sum_probs=40.8
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLI 475 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeE 475 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+....+..|.+.+++..
T Consensus 21 ~~l~~vs~~--i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~ 72 (252)
T CHL00131 21 EILKGLNLS--INKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGES 72 (252)
T ss_pred EeeecceeE--EcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEE
Confidence 467777777 9999999999999999999999999983111455666665544
No 265
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.36 E-value=2.8e-07 Score=111.96 Aligned_cols=60 Identities=13% Similarity=0.074 Sum_probs=47.9
Q ss_pred cccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc---------ccccceeeec
Q psy5893 423 HVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII---------KDSIRDCFVT 486 (1182)
Q Consensus 423 ~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL---------rdsIr~VFQT 486 (1182)
.+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.|.+..+ ...|+++||.
T Consensus 278 ~l~~isl~--i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p--~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~ 346 (510)
T PRK09700 278 KVRDISFS--VCRGEILGFAGLVGSGRTELMNCLFGVDKR--AGGEIRLNGKDISPRSPLDAVKKGMAYITES 346 (510)
T ss_pred cccceeEE--EcCCcEEEEECCCCCCHHHHHHHHhCCCcC--CCCeEEECCEECCCCCHHHHHHCCcEEccCc
Confidence 56666666 999999999999999999999999999984 456666655432 2357888886
No 266
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=98.36 E-value=4.1e-07 Score=114.86 Aligned_cols=86 Identities=15% Similarity=-0.006 Sum_probs=65.0
Q ss_pred eceeeeeccc--ccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccc--------cccc
Q psy5893 410 KFRRKEDIQA--KKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLI--------IKDS 479 (1182)
Q Consensus 410 ~~~~~~~~~~--~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeE--------Lrds 479 (1182)
+-++...|.. .+..+.+++++ +++|++++||||||||||||+++|+|+++| .+|.+.+++.+ ++..
T Consensus 481 ~~nVsf~Y~~~~~~~vL~~isl~--i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p--~~G~I~idg~~i~~~~~~~lr~~ 556 (711)
T TIGR00958 481 FQDVSFSYPNRPDVPVLKGLTFT--LHPGEVVALVGPSGSGKSTVAALLQNLYQP--TGGQVLLDGVPLVQYDHHYLHRQ 556 (711)
T ss_pred EEEEEEECCCCCCCccccCceEE--EcCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCEEEECCEEHHhcCHHHHHhh
Confidence 4455555532 23466777777 999999999999999999999999999995 55666665543 4568
Q ss_pred cceeeecCcccccchHHHhh
Q psy5893 480 IRDCFVTGKWKASEDASELL 499 (1182)
Q Consensus 480 Ir~VFQTGkw~~~~~~~~ll 499 (1182)
|++++|...++.+.-.++|.
T Consensus 557 i~~v~Q~~~lF~gTIreNI~ 576 (711)
T TIGR00958 557 VALVGQEPVLFSGSVRENIA 576 (711)
T ss_pred ceEEecCccccccCHHHHHh
Confidence 99999999888765555554
No 267
>KOG0058|consensus
Probab=98.35 E-value=4.2e-07 Score=111.28 Aligned_cols=92 Identities=17% Similarity=0.011 Sum_probs=69.0
Q ss_pred cceeceeeeecccccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc--------cc
Q psy5893 407 GERKFRRKEDIQAKKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII--------KD 478 (1182)
Q Consensus 407 ~~~~~~~~~~~~~~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL--------rd 478 (1182)
.+.|-+|...|.+...+.-.-|+++.++||++||||||||+||||++.+|..+|. |.+|.+..++.++ +.
T Consensus 465 ~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~--PtsG~IllDG~~i~~~~~~~lr~ 542 (716)
T KOG0058|consen 465 VIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD--PTSGRILLDGVPISDINHKYLRR 542 (716)
T ss_pred eEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCCeEEECCeehhhcCHHHHHH
Confidence 4457778887776655433334444499999999999999999999999999999 4566666665544 56
Q ss_pred ccceeeecCcccccchHHHhhh
Q psy5893 479 SIRDCFVTGKWKASEDASELLR 500 (1182)
Q Consensus 479 sIr~VFQTGkw~~~~~~~~ll~ 500 (1182)
.|+.+-|..-++...-.++++-
T Consensus 543 ~Ig~V~QEPvLFs~sI~eNI~Y 564 (716)
T KOG0058|consen 543 KIGLVGQEPVLFSGSIRENIAY 564 (716)
T ss_pred HeeeeeccceeecccHHHHHhc
Confidence 7999999988887666666543
No 268
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.35 E-value=2.7e-07 Score=104.29 Aligned_cols=60 Identities=10% Similarity=0.029 Sum_probs=48.3
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccccccccceeeecCcc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIKDSIRDCFVTGKW 489 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeELrdsIr~VFQTGkw 489 (1182)
+..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++ .+++++|....
T Consensus 50 ~~vL~~vs~~--i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p--~~G~I~i~g-----~i~yv~q~~~l 109 (282)
T cd03291 50 APVLKNINLK--IEKGEMLAITGSTGSGKTSLLMLILGELEP--SEGKIKHSG-----RISFSSQFSWI 109 (282)
T ss_pred ccceeeeeEE--EcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECC-----EEEEEeCcccc
Confidence 3466777777 999999999999999999999999999984 456666654 47888887543
No 269
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=98.34 E-value=2.4e-07 Score=102.33 Aligned_cols=61 Identities=15% Similarity=0.048 Sum_probs=47.9
Q ss_pred cccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc--------ccccceeeecCc
Q psy5893 423 HVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII--------KDSIRDCFVTGK 488 (1182)
Q Consensus 423 ~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL--------rdsIr~VFQTGk 488 (1182)
++..++++ +.+|++++|+|||||||||||++|+|+++ + +|.+.+++..+ ...++++||...
T Consensus 11 ~l~~vsl~--i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~--~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~ 79 (248)
T PRK03695 11 RLGPLSAE--VRAGEILHLVGPNGAGKSTLLARMAGLLP--G-SGSIQFAGQPLEAWSAAELARHRAYLSQQQT 79 (248)
T ss_pred eecceEEE--EcCCCEEEEECCCCCCHHHHHHHHcCCCC--C-CeEEEECCEecCcCCHHHHhhheEEecccCc
Confidence 45666666 99999999999999999999999999986 2 57777766543 234778888753
No 270
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.34 E-value=3.9e-07 Score=107.53 Aligned_cols=69 Identities=17% Similarity=0.038 Sum_probs=58.1
Q ss_pred ccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc---------ccccceeeecCccc
Q psy5893 420 KKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII---------KDSIRDCFVTGKWK 490 (1182)
Q Consensus 420 ~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL---------rdsIr~VFQTGkw~ 490 (1182)
...+.+.||++ +.+|+|.||+|.||||||||+++|.|++. |.+|.+.|++..+ +..|+++||...+.
T Consensus 16 ~~~And~V~l~--v~~GeIHaLLGENGAGKSTLm~iL~G~~~--P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv 91 (501)
T COG3845 16 GVVANDDVSLS--VKKGEIHALLGENGAGKSTLMKILFGLYQ--PDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLV 91 (501)
T ss_pred CEEecCceeee--ecCCcEEEEeccCCCCHHHHHHHHhCccc--CCcceEEECCEEeccCCHHHHHHcCCcEEeeccccc
Confidence 34567777887 99999999999999999999999999999 5677777777654 46799999999886
Q ss_pred cc
Q psy5893 491 AS 492 (1182)
Q Consensus 491 ~~ 492 (1182)
..
T Consensus 92 ~~ 93 (501)
T COG3845 92 PT 93 (501)
T ss_pred cc
Confidence 54
No 271
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.34 E-value=4e-07 Score=100.31 Aligned_cols=68 Identities=24% Similarity=0.180 Sum_probs=51.1
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCC---CCcccccCccccc----------ccccceeeecCc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKT---PLSVIKGPVTLII----------KDSIRDCFVTGK 488 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~---~~SGii~wdgeEL----------rdsIr~VFQTGk 488 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+..+. +.+|.+.+++..+ +..++++||...
T Consensus 17 ~~l~~~s~~--i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 94 (250)
T PRK14266 17 HILKNVNLD--IPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPN 94 (250)
T ss_pred EEEeeeEEE--EcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCc
Confidence 466777777 9999999999999999999999999986421 2456565555432 346889998865
Q ss_pred ccc
Q psy5893 489 WKA 491 (1182)
Q Consensus 489 w~~ 491 (1182)
+..
T Consensus 95 ~~~ 97 (250)
T PRK14266 95 PFP 97 (250)
T ss_pred cCc
Confidence 543
No 272
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.34 E-value=3.7e-07 Score=111.37 Aligned_cols=65 Identities=17% Similarity=0.051 Sum_probs=50.7
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCC---CCcccccCccccc-----------c-cccceeeec
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKT---PLSVIKGPVTLII-----------K-DSIRDCFVT 486 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~---~~SGii~wdgeEL-----------r-dsIr~VFQT 486 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++|. +.+|.+.+++..+ + ..++++||.
T Consensus 23 ~~l~~isl~--i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~ 100 (529)
T PRK15134 23 TVVNDVSLQ--IEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQE 100 (529)
T ss_pred eeeeceEEE--EeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecC
Confidence 466777777 9999999999999999999999999999853 2456666655432 1 358899998
Q ss_pred Cc
Q psy5893 487 GK 488 (1182)
Q Consensus 487 Gk 488 (1182)
..
T Consensus 101 ~~ 102 (529)
T PRK15134 101 PM 102 (529)
T ss_pred ch
Confidence 53
No 273
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.34 E-value=3.4e-07 Score=111.14 Aligned_cols=65 Identities=20% Similarity=0.108 Sum_probs=50.4
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc---------ccccceeeecCccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII---------KDSIRDCFVTGKWK 490 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL---------rdsIr~VFQTGkw~ 490 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+.+..+ ...++++||...+.
T Consensus 19 ~il~~vs~~--i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~ 92 (510)
T PRK09700 19 HALKSVNLT--VYPGEIHALLGENGAGKSTLMKVLSGIHEP--TKGTITINNINYNKLDHKLAAQLGIGIIYQELSVI 92 (510)
T ss_pred EEeeeeeEE--EcCCcEEEEECCCCCCHHHHHHHHcCCcCC--CccEEEECCEECCCCCHHHHHHCCeEEEeeccccc
Confidence 466777777 999999999999999999999999999985 455555554432 23588899986543
No 274
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.33 E-value=5.7e-07 Score=103.82 Aligned_cols=69 Identities=20% Similarity=0.095 Sum_probs=53.8
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCC---CCcccccCccccc----------ccccceeeecC
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKT---PLSVIKGPVTLII----------KDSIRDCFVTG 487 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~---~~SGii~wdgeEL----------rdsIr~VFQTG 487 (1182)
...+..++++ +++|++++|+|||||||||||++|+|+..+. +.+|.+.+++..+ +..++++||..
T Consensus 95 ~~~L~~is~~--I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~ 172 (329)
T PRK14257 95 KHVLHDLNLD--IKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKP 172 (329)
T ss_pred ceeeeeeEEE--EcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCC
Confidence 3467778888 9999999999999999999999999998642 3456666655443 45789999986
Q ss_pred cccc
Q psy5893 488 KWKA 491 (1182)
Q Consensus 488 kw~~ 491 (1182)
..+.
T Consensus 173 ~~~~ 176 (329)
T PRK14257 173 TPFE 176 (329)
T ss_pred ccCC
Confidence 5543
No 275
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.33 E-value=3.8e-07 Score=98.19 Aligned_cols=60 Identities=18% Similarity=0.088 Sum_probs=45.0
Q ss_pred CCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc------------ccccceeeecCccc
Q psy5893 428 DRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII------------KDSIRDCFVTGKWK 490 (1182)
Q Consensus 428 d~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL------------rdsIr~VFQTGkw~ 490 (1182)
+.++.+.+ ++++|+|||||||||||++|+|+++|+ +|.+.+++..+ ...++++||.....
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 87 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPD--GGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALF 87 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEecccccchhhhhhHhhcEEEEecCCccC
Confidence 44555999 999999999999999999999999854 45555544332 34578888875443
No 276
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.33 E-value=3.1e-07 Score=114.27 Aligned_cols=62 Identities=24% Similarity=0.135 Sum_probs=50.2
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc-----------ccccceeeecC
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII-----------KDSIRDCFVTG 487 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL-----------rdsIr~VFQTG 487 (1182)
.++..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.|.+..+ +..|+++||+.
T Consensus 338 ~~l~~vs~~--i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p--~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~ 410 (623)
T PRK10261 338 HAVEKVSFD--LWPGETLSLVGESGSGKSTTGRALLRLVES--QGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDP 410 (623)
T ss_pred EEEeeeEeE--EcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCcEEEECCEECCcCCHHHHHHhcCCeEEEecCc
Confidence 466777777 999999999999999999999999999984 556666665432 34689999985
No 277
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=98.33 E-value=4.6e-07 Score=101.51 Aligned_cols=67 Identities=21% Similarity=0.203 Sum_probs=50.4
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCC---CCcccccCccccc----------ccccceeeecCc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKT---PLSVIKGPVTLII----------KDSIRDCFVTGK 488 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~---~~SGii~wdgeEL----------rdsIr~VFQTGk 488 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|++++. +.+|.+.+++..+ +..++++||...
T Consensus 39 ~il~~vs~~--i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~ 116 (272)
T PRK14236 39 QALFDISMR--IPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPN 116 (272)
T ss_pred eEeeeEEEE--EcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCc
Confidence 466777777 9999999999999999999999999998731 2456565554432 346788888754
Q ss_pred cc
Q psy5893 489 WK 490 (1182)
Q Consensus 489 w~ 490 (1182)
..
T Consensus 117 l~ 118 (272)
T PRK14236 117 PF 118 (272)
T ss_pred cC
Confidence 43
No 278
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.33 E-value=4.8e-07 Score=111.00 Aligned_cols=62 Identities=16% Similarity=0.117 Sum_probs=49.2
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccccccccceeeecCccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIKDSIRDCFVTGKWK 490 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeELrdsIr~VFQTGkw~ 490 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.++. ...|+++||...+.
T Consensus 19 ~il~~is~~--i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p--~~G~i~~~~---~~~i~~v~Q~~~~~ 80 (552)
T TIGR03719 19 EILKDISLS--FFPGAKIGVLGLNGAGKSTLLRIMAGVDKE--FNGEARPAP---GIKVGYLPQEPQLD 80 (552)
T ss_pred eeecCceEE--ECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEecC---CCEEEEEeccCCCC
Confidence 456666666 999999999999999999999999999985 455555543 24689999986543
No 279
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.32 E-value=4.8e-07 Score=110.43 Aligned_cols=62 Identities=10% Similarity=-0.061 Sum_probs=50.0
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccccccccceeeecCccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIKDSIRDCFVTGKWK 490 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeELrdsIr~VFQTGkw~ 490 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+.+. ..|+++||...+.
T Consensus 15 ~il~~vsl~--i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p--~~G~i~~~~~---~~i~~~~q~~~~~ 76 (530)
T PRK15064 15 PLFENISVK--FGGGNRYGLIGANGCGKSTFMKILGGDLEP--SAGNVSLDPN---ERLGKLRQDQFAF 76 (530)
T ss_pred EeEeCCEEE--ECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEecCC---CEEEEEeccCCcC
Confidence 466777777 999999999999999999999999999984 4566666542 4588899976544
No 280
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.32 E-value=4.6e-07 Score=103.35 Aligned_cols=67 Identities=24% Similarity=0.292 Sum_probs=50.9
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCC---CCCcccccCccccc----------ccccceeeecCc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTK---TPLSVIKGPVTLII----------KDSIRDCFVTGK 488 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~---~~~SGii~wdgeEL----------rdsIr~VFQTGk 488 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|++.+ .+.+|.+.+++..+ +..|+++||...
T Consensus 59 ~iL~~is~~--i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~ 136 (305)
T PRK14264 59 HALKGVSMD--IPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPN 136 (305)
T ss_pred eeeeeeEEE--EcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCc
Confidence 467777777 999999999999999999999999999863 13456565554332 346888888864
Q ss_pred cc
Q psy5893 489 WK 490 (1182)
Q Consensus 489 w~ 490 (1182)
..
T Consensus 137 l~ 138 (305)
T PRK14264 137 PF 138 (305)
T ss_pred cc
Confidence 43
No 281
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.32 E-value=4.7e-07 Score=110.13 Aligned_cols=66 Identities=18% Similarity=-0.069 Sum_probs=51.2
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccccc---------cccceeeecCccc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIK---------DSIRDCFVTGKWK 490 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeELr---------dsIr~VFQTGkw~ 490 (1182)
+..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+.+..+. ..++++||...+.
T Consensus 24 ~~il~~vsl~--i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 98 (510)
T PRK15439 24 VEVLKGIDFT--LHAGEVHALLGGNGAGKSTLMKIIAGIVPP--DSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLF 98 (510)
T ss_pred ceeeeeeEEE--EcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCCCCHHHHHhCCEEEEeccCccC
Confidence 3467777777 999999999999999999999999999984 4566666554331 2477888876544
No 282
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=98.31 E-value=5.5e-07 Score=110.64 Aligned_cols=75 Identities=20% Similarity=0.148 Sum_probs=59.5
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccc--------ccccccceeeecCccccc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTL--------IIKDSIRDCFVTGKWKAS 492 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdge--------ELrdsIr~VFQTGkw~~~ 492 (1182)
+..+..++++ +++|+.++|+||||||||||+++|+|+++| .+|.+.+++. .++..+++++|+..++.+
T Consensus 353 ~~iL~~inl~--i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p--~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~ 428 (576)
T TIGR02204 353 QPALDGLNLT--VRPGETVALVGPSGAGKSTLFQLLLRFYDP--QSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAA 428 (576)
T ss_pred CccccceeEE--ecCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCEEEECCEEHHhcCHHHHHHhceEEccCCccccc
Confidence 3467777777 999999999999999999999999999995 4555555543 345689999999988876
Q ss_pred chHHHhh
Q psy5893 493 EDASELL 499 (1182)
Q Consensus 493 ~~~~~ll 499 (1182)
.-.++|.
T Consensus 429 Ti~~Ni~ 435 (576)
T TIGR02204 429 SVMENIR 435 (576)
T ss_pred cHHHHHh
Confidence 5555554
No 283
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.31 E-value=5.5e-07 Score=101.46 Aligned_cols=65 Identities=14% Similarity=0.051 Sum_probs=52.6
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc--------ccccceeeecCcccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII--------KDSIRDCFVTGKWKA 491 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL--------rdsIr~VFQTGkw~~ 491 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++ . +|.+.|++..+ +..|+++||...++.
T Consensus 18 ~~l~~isl~--I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~--~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~ 90 (275)
T cd03289 18 AVLENISFS--ISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T--EGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFS 90 (275)
T ss_pred cceeceEEE--EcCCCEEEEECCCCCCHHHHHHHHhhhcC-C--CcEEEECCEEhhhCCHHHHhhhEEEECCCcccch
Confidence 356777777 99999999999999999999999999997 2 46666766543 457899999876654
No 284
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=98.31 E-value=4e-07 Score=111.52 Aligned_cols=78 Identities=15% Similarity=-0.039 Sum_probs=57.6
Q ss_pred eceeeeecccccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccc--------ccccccc
Q psy5893 410 KFRRKEDIQAKKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTL--------IIKDSIR 481 (1182)
Q Consensus 410 ~~~~~~~~~~~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdge--------ELrdsIr 481 (1182)
+-.+...+......+..++++ +++|+.++|+||||||||||+++|+|+++| .+|.+.+++. .++..++
T Consensus 325 ~~~v~f~y~~~~~~l~~i~~~--i~~G~~~aivG~sGsGKSTL~~ll~g~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~ 400 (547)
T PRK10522 325 LRNVTFAYQDNGFSVGPINLT--IKRGELLFLIGGNGSGKSTLAMLLTGLYQP--QSGEILLDGKPVTAEQPEDYRKLFS 400 (547)
T ss_pred EEEEEEEeCCCCeEEecceEE--EcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEECCCCCHHHHhhheE
Confidence 334444443233467777777 999999999999999999999999999995 4555555544 3456788
Q ss_pred eeeecCcccc
Q psy5893 482 DCFVTGKWKA 491 (1182)
Q Consensus 482 ~VFQTGkw~~ 491 (1182)
+++|+..++.
T Consensus 401 ~v~q~~~lf~ 410 (547)
T PRK10522 401 AVFTDFHLFD 410 (547)
T ss_pred EEecChhHHH
Confidence 9999876653
No 285
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.31 E-value=5.3e-07 Score=98.84 Aligned_cols=65 Identities=23% Similarity=0.143 Sum_probs=49.5
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc------ccccceeeecCccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII------KDSIRDCFVTGKWK 490 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL------rdsIr~VFQTGkw~ 490 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++++ .|.+.+++..+ ...++++||.....
T Consensus 14 ~il~~is~~--i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~--~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~ 84 (237)
T TIGR00968 14 QALDDVNLE--VPTGSLVALLGPSGSGKSTLLRIIAGLEQPD--SGRIRLNGQDATRVHARDRKIGFVFQHYALF 84 (237)
T ss_pred eeeeeEEEE--EcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--ceEEEECCEEcCcCChhhcCEEEEecChhhc
Confidence 467777777 9999999999999999999999999999854 44444443322 34678888875544
No 286
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.31 E-value=3.3e-07 Score=110.75 Aligned_cols=65 Identities=23% Similarity=0.204 Sum_probs=51.3
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc---------ccccceeeecCccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII---------KDSIRDCFVTGKWK 490 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL---------rdsIr~VFQTGkw~ 490 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++..+ ...++++||...+.
T Consensus 12 ~il~~vs~~--i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 85 (491)
T PRK10982 12 KALDNVNLK--VRPHSIHALMGENGAGKSTLLKCLFGIYQK--DSGSILFQGKEIDFKSSKEALENGISMVHQELNLV 85 (491)
T ss_pred EeeeeeeEE--EcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CceEEEECCEECCCCCHHHHHhCCEEEEecccccc
Confidence 456777777 999999999999999999999999999984 456666665433 34588899986443
No 287
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=98.30 E-value=5.6e-07 Score=110.42 Aligned_cols=86 Identities=14% Similarity=0.004 Sum_probs=63.7
Q ss_pred eceeeeeccc-ccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccc--------cccccc
Q psy5893 410 KFRRKEDIQA-KKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTL--------IIKDSI 480 (1182)
Q Consensus 410 ~~~~~~~~~~-~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdge--------ELrdsI 480 (1182)
+-.+...+.. .+..+..++++ +++|++++|+|+||||||||+++|+|+++| .+|.+.+++. +++..+
T Consensus 333 ~~~v~f~y~~~~~~il~~inl~--i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~--~~G~I~i~g~~i~~~~~~~~~~~i 408 (571)
T TIGR02203 333 FRNVTFRYPGRDRPALDSISLV--IEPGETVALVGRSGSGKSTLVNLIPRFYEP--DSGQILLDGHDLADYTLASLRRQV 408 (571)
T ss_pred EEEEEEEcCCCCCccccCeeEE--ecCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCeEEECCEeHHhcCHHHHHhhc
Confidence 3334444432 23456777777 999999999999999999999999999994 4555655553 456789
Q ss_pred ceeeecCcccccchHHHhh
Q psy5893 481 RDCFVTGKWKASEDASELL 499 (1182)
Q Consensus 481 r~VFQTGkw~~~~~~~~ll 499 (1182)
++++|+..++.+.-.++|.
T Consensus 409 ~~v~Q~~~lf~~Ti~~Ni~ 427 (571)
T TIGR02203 409 ALVSQDVVLFNDTIANNIA 427 (571)
T ss_pred eEEccCcccccccHHHHHh
Confidence 9999999888765555554
No 288
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.30 E-value=4.8e-07 Score=109.74 Aligned_cols=65 Identities=15% Similarity=0.057 Sum_probs=50.7
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc---------ccccceeeecCccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII---------KDSIRDCFVTGKWK 490 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL---------rdsIr~VFQTGkw~ 490 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++..+ +..++++||...+.
T Consensus 18 ~il~~isl~--i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~ 91 (501)
T PRK11288 18 KALDDISFD--CRAGQVHALMGENGAGKSTLLKILSGNYQP--DAGSILIDGQEMRFASTTAALAAGVAIIYQELHLV 91 (501)
T ss_pred EEEeeeeEE--EeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEECCCCCHHHHHhCCEEEEEechhcc
Confidence 466777777 999999999999999999999999999985 455565555432 34688999986443
No 289
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=4.2e-07 Score=96.00 Aligned_cols=48 Identities=23% Similarity=0.151 Sum_probs=40.3
Q ss_pred cccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc
Q psy5893 425 PQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII 476 (1182)
Q Consensus 425 ~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL 476 (1182)
..++|+ +.+|+++.|.||||||||||||+|+||.. |.+|.+.|.+..+
T Consensus 19 ~~L~f~--l~~Ge~~~i~G~NG~GKTtLLRilaGLl~--p~~G~v~~~~~~i 66 (209)
T COG4133 19 SDLSFT--LNAGEALQITGPNGAGKTTLLRILAGLLR--PDAGEVYWQGEPI 66 (209)
T ss_pred cceeEE--EcCCCEEEEECCCCCcHHHHHHHHHcccC--CCCCeEEecCCCC
Confidence 344455 99999999999999999999999999999 5677788876543
No 290
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.29 E-value=3.7e-07 Score=99.43 Aligned_cols=51 Identities=24% Similarity=0.216 Sum_probs=42.5
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLI 475 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeE 475 (1182)
+..+..++++ +.+|++++|+||||||||||+++|+|+++ |.+|.+.|++..
T Consensus 35 ~~il~~vs~~--i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~ 85 (224)
T cd03220 35 FWALKDVSFE--VPRGERIGLIGRNGAGKSTLLRLLAGIYP--PDSGTVTVRGRV 85 (224)
T ss_pred eEEEeeeEEE--EcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEE
Confidence 3467777777 99999999999999999999999999998 455666666654
No 291
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.29 E-value=3.6e-07 Score=95.64 Aligned_cols=64 Identities=16% Similarity=0.120 Sum_probs=50.6
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccc---------------------ccccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLI---------------------IKDSI 480 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeE---------------------LrdsI 480 (1182)
..+..|+++ .+.|+++.|||.||||||||||||+-|..| ..|.+..++++ ++..+
T Consensus 20 eVLKGvSL~--A~~GdVisIIGsSGSGKSTfLRCiN~LE~P--~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L 95 (256)
T COG4598 20 EVLKGVSLQ--ANAGDVISIIGSSGSGKSTFLRCINFLEKP--SAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRL 95 (256)
T ss_pred hhhcceeee--cCCCCEEEEecCCCCchhHHHHHHHhhcCC--CCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHh
Confidence 456777777 899999999999999999999999999985 44445444433 34678
Q ss_pred ceeeecCcc
Q psy5893 481 RDCFVTGKW 489 (1182)
Q Consensus 481 r~VFQTGkw 489 (1182)
+++||..++
T Consensus 96 ~mVFQ~FNL 104 (256)
T COG4598 96 GMVFQHFNL 104 (256)
T ss_pred hHhhhhcch
Confidence 999999764
No 292
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.29 E-value=5.5e-07 Score=112.15 Aligned_cols=42 Identities=19% Similarity=0.173 Sum_probs=36.8
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCC
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPL 465 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~ 465 (1182)
.++..++++ +.+|++++|||||||||||||++|+|+++|+.|
T Consensus 30 ~~l~~is~~--v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G 71 (623)
T PRK10261 30 AAVRNLSFS--LQRGETLAIVGESGSGKSVTALALMRLLEQAGG 71 (623)
T ss_pred eEEEeeEEE--ECCCCEEEEECCCCChHHHHHHHHHcCCCCCCe
Confidence 467777777 999999999999999999999999999985443
No 293
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.29 E-value=5.8e-07 Score=100.00 Aligned_cols=68 Identities=16% Similarity=0.131 Sum_probs=49.7
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCc----ccccCccc--------ccccccceeeecCc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLS----VIKGPVTL--------IIKDSIRDCFVTGK 488 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~S----Gii~wdge--------ELrdsIr~VFQTGk 488 (1182)
+..+..++++ +.+|++++|+|||||||||||++|+|+++|+.|+ |.+.+.+. .++..++++||...
T Consensus 23 ~~~l~~vs~~--i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~ 100 (257)
T PRK14246 23 KAILKDITIK--IPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPN 100 (257)
T ss_pred ceeEeceEEE--EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCc
Confidence 3456777777 9999999999999999999999999999966543 32222222 23456788888764
Q ss_pred cc
Q psy5893 489 WK 490 (1182)
Q Consensus 489 w~ 490 (1182)
..
T Consensus 101 ~~ 102 (257)
T PRK14246 101 PF 102 (257)
T ss_pred cC
Confidence 43
No 294
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.28 E-value=6.3e-07 Score=99.34 Aligned_cols=50 Identities=18% Similarity=0.082 Sum_probs=41.0
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccccccccceeeecCc
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIKDSIRDCFVTGK 488 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeELrdsIr~VFQTGk 488 (1182)
+.+|++++|+|||||||||||++|+|+++| .+|.+.|.+. .|++++|...
T Consensus 22 i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p--~~G~i~~~g~----~i~~~~q~~~ 71 (246)
T cd03237 22 ISESEVIGILGPNGIGKTTFIKMLAGVLKP--DEGDIEIELD----TVSYKPQYIK 71 (246)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCCeEEECCc----eEEEeccccc
Confidence 779999999999999999999999999984 4566666654 5677777643
No 295
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.28 E-value=7.6e-07 Score=99.09 Aligned_cols=67 Identities=16% Similarity=0.170 Sum_probs=49.1
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCC---CcccccCcccc----------cccccceeeecCc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTP---LSVIKGPVTLI----------IKDSIRDCFVTGK 488 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~---~SGii~wdgeE----------LrdsIr~VFQTGk 488 (1182)
..+..++++ +++|++++|+|||||||||||++|+|+++++. ..|.+.+++.+ ++..++++||...
T Consensus 21 ~il~~is~~--i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 98 (261)
T PRK14258 21 KILEGVSME--IYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPN 98 (261)
T ss_pred eEeeceEEE--EcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCc
Confidence 456667766 99999999999999999999999999998531 14555454433 2345777787754
Q ss_pred cc
Q psy5893 489 WK 490 (1182)
Q Consensus 489 w~ 490 (1182)
+.
T Consensus 99 l~ 100 (261)
T PRK14258 99 LF 100 (261)
T ss_pred cC
Confidence 43
No 296
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.27 E-value=7.9e-07 Score=109.53 Aligned_cols=73 Identities=18% Similarity=0.154 Sum_probs=56.7
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccc--------ccccccceeeecCcccccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTL--------IIKDSIRDCFVTGKWKASE 493 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdge--------ELrdsIr~VFQTGkw~~~~ 493 (1182)
..+..++++ +++|++++|+||||||||||+++|+|+++| .+|.+.+++. .++..+++++|...++.+.
T Consensus 329 ~~l~~i~~~--i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p--~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~t 404 (569)
T PRK10789 329 PALENVNFT--LKPGQMLGICGPTGSGKSTLLSLIQRHFDV--SEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDT 404 (569)
T ss_pred ccccCeeEE--ECCCCEEEEECCCCCCHHHHHHHHhcccCC--CCCEEEECCEEHhhCCHHHHHhheEEEccCCeecccc
Confidence 466777777 999999999999999999999999999995 4555555544 3456789999998777554
Q ss_pred hHHHh
Q psy5893 494 DASEL 498 (1182)
Q Consensus 494 ~~~~l 498 (1182)
-.++|
T Consensus 405 i~~Ni 409 (569)
T PRK10789 405 VANNI 409 (569)
T ss_pred HHHHH
Confidence 44444
No 297
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.27 E-value=4.5e-07 Score=101.96 Aligned_cols=65 Identities=20% Similarity=0.043 Sum_probs=50.5
Q ss_pred ccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc------------ccccceeeecCccc
Q psy5893 424 VPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII------------KDSIRDCFVTGKWK 490 (1182)
Q Consensus 424 i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL------------rdsIr~VFQTGkw~ 490 (1182)
+-.-|.++.++.|+|++|+|-||||||||+|||++|+.| +.|.+.+++.++ +..++++||..-+.
T Consensus 42 vGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiep--t~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLl 118 (386)
T COG4175 42 VGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEP--TRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALL 118 (386)
T ss_pred EeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCC--CCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccc
Confidence 334455555999999999999999999999999999995 555555555443 35799999997443
No 298
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.27 E-value=6.8e-07 Score=97.90 Aligned_cols=42 Identities=26% Similarity=0.339 Sum_probs=38.6
Q ss_pred ccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCC
Q psy5893 420 KKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKT 463 (1182)
Q Consensus 420 ~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~ 463 (1182)
++..+..++.+ |++|+..+|+|||||||||||++|+|..+|+
T Consensus 43 gk~iL~~isW~--V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps 84 (257)
T COG1119 43 GKKILGDLSWQ--VNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS 84 (257)
T ss_pred CEeecccccee--ecCCCcEEEECCCCCCHHHHHHHHhcccCCC
Confidence 56778888888 9999999999999999999999999999965
No 299
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=98.27 E-value=8.5e-07 Score=109.64 Aligned_cols=85 Identities=19% Similarity=0.139 Sum_probs=61.3
Q ss_pred ceeeeecccccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccc--------ccccccce
Q psy5893 411 FRRKEDIQAKKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTL--------IIKDSIRD 482 (1182)
Q Consensus 411 ~~~~~~~~~~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdge--------ELrdsIr~ 482 (1182)
-.+...+...+..+..++++ +++|++++|+||||||||||+++|+|+++| .+|.+.+++. .++..+++
T Consensus 338 ~~v~~~y~~~~~~l~~i~~~--i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~ 413 (585)
T TIGR01192 338 RHITFEFANSSQGVFDVSFE--AKAGQTVAIVGPTGAGKTTLINLLQRVYDP--TVGQILIDGIDINTVTRESLRKSIAT 413 (585)
T ss_pred EEEEEECCCCCccccceeEE--EcCCCEEEEECCCCCCHHHHHHHHccCCCC--CCCEEEECCEEhhhCCHHHHHhheEE
Confidence 33444443223456777777 999999999999999999999999999995 4555555443 34568999
Q ss_pred eeecCcccccchHHHhh
Q psy5893 483 CFVTGKWKASEDASELL 499 (1182)
Q Consensus 483 VFQTGkw~~~~~~~~ll 499 (1182)
++|+..++...-.++|.
T Consensus 414 v~q~~~lf~~ti~~Ni~ 430 (585)
T TIGR01192 414 VFQDAGLFNRSIRENIR 430 (585)
T ss_pred EccCCccCcccHHHHHh
Confidence 99998777544444443
No 300
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.27 E-value=8.8e-07 Score=108.45 Aligned_cols=86 Identities=17% Similarity=0.046 Sum_probs=62.3
Q ss_pred eceeeeeccc-ccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccc--------cccccc
Q psy5893 410 KFRRKEDIQA-KKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTL--------IIKDSI 480 (1182)
Q Consensus 410 ~~~~~~~~~~-~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdge--------ELrdsI 480 (1182)
+-.+...+.. .+..+..++++ +++|+.++|+||||||||||+++|+|+++|+ +|.+.+++. .++..+
T Consensus 319 ~~~v~~~y~~~~~~~l~~~~~~--i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~--~G~i~~~g~~i~~~~~~~~~~~i 394 (544)
T TIGR01842 319 VENVTIVPPGGKKPTLRGISFR--LQAGEALAIIGPSGSGKSTLARLIVGIWPPT--SGSVRLDGADLKQWDRETFGKHI 394 (544)
T ss_pred EEEEEEEcCCCCccccccceEE--EcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEehhhCCHHHHhhhe
Confidence 4444444432 23567777777 9999999999999999999999999999954 455555544 345679
Q ss_pred ceeeecCcccccchHHHhh
Q psy5893 481 RDCFVTGKWKASEDASELL 499 (1182)
Q Consensus 481 r~VFQTGkw~~~~~~~~ll 499 (1182)
++++|...++.+.-.+++.
T Consensus 395 ~~v~q~~~lf~~ti~~Ni~ 413 (544)
T TIGR01842 395 GYLPQDVELFPGTVAENIA 413 (544)
T ss_pred EEecCCcccccccHHHHHh
Confidence 9999998776554445543
No 301
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.26 E-value=4.9e-07 Score=101.18 Aligned_cols=48 Identities=17% Similarity=0.074 Sum_probs=39.8
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVT 473 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdg 473 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++
T Consensus 38 ~il~~is~~--i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p--~~G~I~~~g 85 (264)
T PRK13546 38 FALDDISLK--AYEGDVIGLVGINGSGKSTLSNIIGGSLSP--TVGKVDRNG 85 (264)
T ss_pred EEEeeeEEE--EcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECC
Confidence 455666666 999999999999999999999999999985 455565555
No 302
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.25 E-value=6.5e-07 Score=91.82 Aligned_cols=60 Identities=27% Similarity=0.145 Sum_probs=45.9
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc--------ccccceeee
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII--------KDSIRDCFV 485 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL--------rdsIr~VFQ 485 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|++++ ..|.+.+++..+ ...+.++||
T Consensus 13 ~~l~~~~~~--i~~g~~~~i~G~nGsGKStll~~l~g~~~~--~~G~i~~~~~~~~~~~~~~~~~~i~~~~q 80 (157)
T cd00267 13 TALDNVSLT--LKAGEIVALVGPNGSGKSTLLRAIAGLLKP--TSGEILIDGKDIAKLPLEELRRRIGYVPQ 80 (157)
T ss_pred eeEeeeEEE--EcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCEEcccCCHHHHHhceEEEee
Confidence 356666666 999999999999999999999999999984 455566655432 244666666
No 303
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.25 E-value=8.1e-07 Score=111.87 Aligned_cols=87 Identities=13% Similarity=0.091 Sum_probs=64.4
Q ss_pred eeceeeeeccc-ccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccc--------ccccc
Q psy5893 409 RKFRRKEDIQA-KKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTL--------IIKDS 479 (1182)
Q Consensus 409 ~~~~~~~~~~~-~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdge--------ELrds 479 (1182)
.+-.+...|.. .+..+..++++ +++|+.++|+|+||||||||+++|+|+++|+ +|.+.+++. .++..
T Consensus 457 ~~~~vsf~y~~~~~~il~~i~l~--i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~--~G~I~idg~~i~~~~~~~~r~~ 532 (694)
T TIGR01846 457 TFENIRFRYAPDSPEVLSNLNLD--IKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQ--HGQVLVDGVDLAIADPAWLRRQ 532 (694)
T ss_pred EEEEEEEEcCCCCccccccceEE--ECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CceEEECCEehhhCCHHHHHHh
Confidence 34455555532 23467777777 9999999999999999999999999999954 555555544 44678
Q ss_pred cceeeecCcccccchHHHhh
Q psy5893 480 IRDCFVTGKWKASEDASELL 499 (1182)
Q Consensus 480 Ir~VFQTGkw~~~~~~~~ll 499 (1182)
+++++|+...+.+.-.++|.
T Consensus 533 i~~v~q~~~lf~~ti~eNi~ 552 (694)
T TIGR01846 533 MGVVLQENVLFSRSIRDNIA 552 (694)
T ss_pred CeEEccCCeehhhhHHHHHh
Confidence 99999998777655455554
No 304
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.25 E-value=4e-07 Score=96.68 Aligned_cols=64 Identities=16% Similarity=0.186 Sum_probs=46.2
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCc------ccccCcccccccccceeeecC
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLS------VIKGPVTLIIKDSIRDCFVTG 487 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~S------Gii~wdgeELrdsIr~VFQTG 487 (1182)
..+.+++.. +++|.+++|||||||||||||.++++|++.+.|. ....|++.++...+...-|.-
T Consensus 15 ~vl~~isl~--i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N 84 (252)
T COG4604 15 VVLDDVSLD--IPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQEN 84 (252)
T ss_pred Eeeccceee--ecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhc
Confidence 345555555 9999999999999999999999999999966554 233455555555554444443
No 305
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.24 E-value=5.8e-07 Score=108.89 Aligned_cols=63 Identities=13% Similarity=0.075 Sum_probs=48.5
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc---------ccccceeeecC
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII---------KDSIRDCFVTG 487 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL---------rdsIr~VFQTG 487 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| +.+|.+.+.+..+ +..++++||..
T Consensus 274 ~~l~~is~~--i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~ 345 (500)
T TIGR02633 274 KRVDDVSFS--LRRGEILGVAGLVGAGRTELVQALFGAYPG-KFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDR 345 (500)
T ss_pred cccccceeE--EeCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCeEEEECCEECCCCCHHHHHhCCCEEcCcch
Confidence 456666666 999999999999999999999999999973 1356666655332 34578888873
No 306
>KOG1980|consensus
Probab=98.24 E-value=1.5e-06 Score=103.95 Aligned_cols=85 Identities=24% Similarity=0.390 Sum_probs=80.2
Q ss_pred ccceeeeeeeehhhhccccccCCceEeeccceeeeecccccccchhhhhhccccCCCcceeeeEeeccccCCCceEEEEE
Q psy5893 1091 NCFSFQARVKKHRWYGKILKSGNPVIMSVGWRRFQTLPIYSKQEDNMRYRMLKYTPQHVACMAHFWGPITRSGTGFLAVQ 1170 (1182)
Q Consensus 1091 ~~~~~~~r~k~h~w~~~~lks~~p~i~s~g~rr~~~~p~~~~~~~~~r~r~~ky~p~~~~c~~~f~gp~~~~~t~~~~~~ 1170 (1182)
...++++=+++|.-|..+|||..+||+.+|+|||-..|+||....|..+++-+|-|+.+.--|||||||+-++.++|+|.
T Consensus 559 KmtV~Nfvl~r~p~~e~Plkske~livq~G~Rrf~i~PlfSs~t~ndkhK~eRfl~~~~a~vaTviaPI~F~ps~vL~FK 638 (754)
T KOG1980|consen 559 KMTVLNFVLQRHPGYEEPLKSKEELIVQCGFRRFDINPLFSSHTPNDKHKYERFLPPDEAVVATVIAPITFGPSPVLIFK 638 (754)
T ss_pred hheeeEEEEecCCCCCccccccceeEEEeccceEEeccccccCCccchhhhhhhcCccceEEEEEEeccccCCcceEEEE
Confidence 45589999999999999999999999999999999999999888899999999999999999999999999999999998
Q ss_pred ecccc
Q psy5893 1171 DVAKR 1175 (1182)
Q Consensus 1171 ~~~~~ 1175 (1182)
.=+++
T Consensus 639 ~s~~~ 643 (754)
T KOG1980|consen 639 KSSDG 643 (754)
T ss_pred eCCCc
Confidence 76665
No 307
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.23 E-value=6.3e-07 Score=108.71 Aligned_cols=61 Identities=16% Similarity=0.073 Sum_probs=48.2
Q ss_pred cccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc---------ccccceeeecC
Q psy5893 423 HVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII---------KDSIRDCFVTG 487 (1182)
Q Consensus 423 ~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL---------rdsIr~VFQTG 487 (1182)
.+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++..+ +..++++||..
T Consensus 267 ~l~~vsl~--i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p--~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~ 336 (501)
T PRK10762 267 GVNDVSFT--LRKGEILGVSGLMGAGRTELMKVLYGALPR--TSGYVTLDGHEVVTRSPQDGLANGIVYISEDR 336 (501)
T ss_pred CcccceEE--EcCCcEEEEecCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCCCCHHHHHHCCCEEecCcc
Confidence 45666666 999999999999999999999999999984 456666655432 23588888874
No 308
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.23 E-value=6.8e-07 Score=108.54 Aligned_cols=63 Identities=13% Similarity=0.100 Sum_probs=48.2
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc---------ccccceeeecC
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII---------KDSIRDCFVTG 487 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL---------rdsIr~VFQTG 487 (1182)
..+..++++ +++|++++|+|||||||||||++|+|+++| +.+|.+.|.+..+ ...++++||..
T Consensus 276 ~vl~~vsl~--i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~ 347 (506)
T PRK13549 276 KRVDDVSFS--LRRGEILGIAGLVGAGRTELVQCLFGAYPG-RWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDR 347 (506)
T ss_pred ccccceeeE--EcCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCcEEEECCEECCCCCHHHHHHCCCEEeCcch
Confidence 456667766 999999999999999999999999999873 1356666655432 23478888874
No 309
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.23 E-value=1e-06 Score=98.26 Aligned_cols=40 Identities=23% Similarity=0.355 Sum_probs=33.9
Q ss_pred cccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCC
Q psy5893 423 HVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPL 465 (1182)
Q Consensus 423 ~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~ 465 (1182)
.+..++ .+.+|++++|+|||||||||||++|+|+++|+.|
T Consensus 16 ~l~~i~---~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G 55 (255)
T cd03236 16 KLHRLP---VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLG 55 (255)
T ss_pred hhhcCC---CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCc
Confidence 445554 3899999999999999999999999999995544
No 310
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=8.2e-07 Score=105.66 Aligned_cols=87 Identities=16% Similarity=0.082 Sum_probs=61.8
Q ss_pred ceeeeeccccc-ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCc------ccccCccccccccccee
Q psy5893 411 FRRKEDIQAKK-HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLS------VIKGPVTLIIKDSIRDC 483 (1182)
Q Consensus 411 ~~~~~~~~~~k-~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~S------Gii~wdgeELrdsIr~V 483 (1182)
-.+...|.... .++..++++ +.+||.+||+|+|||||||||.+|+|.+.|+.|+ ....++...+++.|.++
T Consensus 340 ~~vsF~y~~~~~~~L~~~~l~--l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl 417 (573)
T COG4987 340 RNVSFTYPGQQTKALKNFNLT--LAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVL 417 (573)
T ss_pred ccceeecCCCccchhhcccee--ecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhh
Confidence 33444444332 456666666 9999999999999999999999999999966554 12234444567788888
Q ss_pred eecCcccccchHHHhh
Q psy5893 484 FVTGKWKASEDASELL 499 (1182)
Q Consensus 484 FQTGkw~~~~~~~~ll 499 (1182)
-|...++.+.-.++|+
T Consensus 418 ~Qr~hlF~~Tlr~NL~ 433 (573)
T COG4987 418 TQRVHLFSGTLRDNLR 433 (573)
T ss_pred ccchHHHHHHHHHHHh
Confidence 8888887654444443
No 311
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.22 E-value=9.2e-07 Score=108.01 Aligned_cols=59 Identities=19% Similarity=0.098 Sum_probs=48.3
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccccccccceeeecC
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIKDSIRDCFVTG 487 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeELrdsIr~VFQTG 487 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.|.+. ..+++++|..
T Consensus 333 ~~l~~is~~--i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p--~~G~i~~~~~---~~i~~~~q~~ 391 (530)
T PRK15064 333 PLFKNLNLL--LEAGERLAIIGENGVGKTTLLRTLVGELEP--DSGTVKWSEN---ANIGYYAQDH 391 (530)
T ss_pred eeecCcEEE--ECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCc---eEEEEEcccc
Confidence 456667766 999999999999999999999999999984 5566666553 4688888874
No 312
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.22 E-value=8.4e-07 Score=108.05 Aligned_cols=65 Identities=17% Similarity=0.021 Sum_probs=49.5
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCc-cc--------------ccccccceeeec
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPV-TL--------------IIKDSIRDCFVT 486 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wd-ge--------------ELrdsIr~VFQT 486 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.|. +. ..+..|+++||.
T Consensus 298 ~il~~is~~--i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~ 373 (520)
T TIGR03269 298 KAVDNVSLE--VKEGEIFGIVGTSGAGKTTLSKIIAGVLEP--TSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQE 373 (520)
T ss_pred eEEeeEEEE--EcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEEecCCccccccccchhhHHHHhhhEEEEccC
Confidence 456777777 999999999999999999999999999985 45555553 21 123458889997
Q ss_pred Cccc
Q psy5893 487 GKWK 490 (1182)
Q Consensus 487 Gkw~ 490 (1182)
..+.
T Consensus 374 ~~l~ 377 (520)
T TIGR03269 374 YDLY 377 (520)
T ss_pred cccC
Confidence 6443
No 313
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.21 E-value=8.3e-07 Score=108.36 Aligned_cols=61 Identities=20% Similarity=0.085 Sum_probs=48.7
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc-----------ccccceeeecC
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII-----------KDSIRDCFVTG 487 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL-----------rdsIr~VFQTG 487 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++ .+|.+.|++..+ +..++++||..
T Consensus 300 ~il~~isl~--i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~ 371 (529)
T PRK15134 300 VVVKNISFT--LRPGETLGLVGESGSGKSTTGLALLRLIN---SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDP 371 (529)
T ss_pred eeeecceeE--EcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCcEEEECCEEccccchhhHHHhhhceEEEEeCc
Confidence 456677776 99999999999999999999999999985 356666665432 34588999985
No 314
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.20 E-value=7.6e-07 Score=108.00 Aligned_cols=60 Identities=15% Similarity=0.064 Sum_probs=47.0
Q ss_pred cccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc---------ccccceeeec
Q psy5893 423 HVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII---------KDSIRDCFVT 486 (1182)
Q Consensus 423 ~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL---------rdsIr~VFQT 486 (1182)
.+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++..+ ...++++||.
T Consensus 268 ~l~~isl~--i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p--~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~ 336 (501)
T PRK11288 268 LREPISFS--VRAGEIVGLFGLVGAGRSELMKLLYGATRR--TAGQVYLDGKPIDIRSPRDAIRAGIMLCPED 336 (501)
T ss_pred cccceeEE--EeCCcEEEEEcCCCCCHHHHHHHHcCCCcC--CCceEEECCEECCCCCHHHHHhCCCEEcCcC
Confidence 55666666 999999999999999999999999999984 456666665433 2346777776
No 315
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=1.2e-06 Score=95.16 Aligned_cols=65 Identities=23% Similarity=0.035 Sum_probs=53.5
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccccc---------cccceeeecC
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIK---------DSIRDCFVTG 487 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeELr---------dsIr~VFQTG 487 (1182)
+..+..+|++ +++|++.+|+||||||||||...|+|.-....+.|.+.++++++. ..|-.-||..
T Consensus 17 keILkgvnL~--v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P 90 (251)
T COG0396 17 KEILKGVNLT--VKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYP 90 (251)
T ss_pred hhhhcCccee--EcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCC
Confidence 4788899998 999999999999999999999999999865566788888777664 3455566664
No 316
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.20 E-value=7.9e-07 Score=98.88 Aligned_cols=52 Identities=25% Similarity=0.059 Sum_probs=45.2
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII 476 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL 476 (1182)
..++++|+++ +.+|++++|||.||||||||-|+|+||+. |++|.+.+.+.++
T Consensus 26 v~avd~Vsf~--i~~ge~~glVGESG~GKSTlgr~i~~L~~--pt~G~i~f~g~~i 77 (268)
T COG4608 26 VKAVDGVSFS--IKEGETLGLVGESGCGKSTLGRLILGLEE--PTSGEILFEGKDI 77 (268)
T ss_pred eEEecceeEE--EcCCCEEEEEecCCCCHHHHHHHHHcCcC--CCCceEEEcCcch
Confidence 3567777777 99999999999999999999999999999 6778888877764
No 317
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.19 E-value=9.4e-07 Score=106.90 Aligned_cols=51 Identities=10% Similarity=0.003 Sum_probs=42.2
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII 476 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL 476 (1182)
..+..+++. +.+|++++|+|||||||||||++|+|+.+| .+|.+.+++..+
T Consensus 262 ~~l~~vsl~--i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 312 (491)
T PRK10982 262 PSIRDVSFD--LHKGEILGIAGLVGAKRTDIVETLFGIREK--SAGTITLHGKKI 312 (491)
T ss_pred cccceeeEE--EeCCcEEEEecCCCCCHHHHHHHHcCCCcC--CccEEEECCEEC
Confidence 356677776 999999999999999999999999999984 566677765443
No 318
>PF08142 AARP2CN: AARP2CN (NUC121) domain; InterPro: IPR012948 This domain is the central domain of AARP2 (asparagine and aspartate rich protein 2). It is weakly similar to the GTP-binding domain of elongation factor TU []. PfAARP2 is an antigen from Plasmodium falciparum of 150 kDa, which is encoded by a unique gene on chromosome 1 []. The central region of Pfaarp2 contains blocks of repetitions encoding asparagine and aspartate residues. ; GO: 0042254 ribosome biogenesis, 0005634 nucleus
Probab=98.19 E-value=5e-07 Score=84.77 Aligned_cols=32 Identities=44% Similarity=0.720 Sum_probs=29.7
Q ss_pred HHhhhhhceeeeeccccccccCCceEEEeeeh
Q psy5893 1045 EVKNLGRFIAVMKFRPLIWQTTHSYMLVTYTV 1076 (1182)
Q Consensus 1045 ei~nl~r~i~v~k~rpl~wr~~hpy~~~~~~~ 1076 (1182)
|++||+|||+++|++|+.||++|||||++...
T Consensus 1 e~~nl~R~i~~~k~~~i~WR~~r~y~lad~~e 32 (85)
T PF08142_consen 1 EILNLLRFISVQKPRPISWRDQRPYMLADRVE 32 (85)
T ss_pred CHHHHHHHHHhCccCCCccccCCCeEEEEEEE
Confidence 78999999999999999999999999997643
No 319
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.19 E-value=8.3e-07 Score=107.96 Aligned_cols=60 Identities=8% Similarity=-0.092 Sum_probs=46.6
Q ss_pred cccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc---------ccccceeeec
Q psy5893 423 HVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII---------KDSIRDCFVT 486 (1182)
Q Consensus 423 ~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL---------rdsIr~VFQT 486 (1182)
.+..++++ +++|++++|+|||||||||||++|+|+++| .+|.+.+++..+ +..|++++|.
T Consensus 278 ~l~~isl~--i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~ 346 (510)
T PRK15439 278 GFRNISLE--VRAGEILGLAGVVGAGRTELAETLYGLRPA--RGGRIMLNGKEINALSTAQRLARGLVYLPED 346 (510)
T ss_pred CccceeEE--EcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCcEEEECCEECCCCCHHHHHhCCcEECCCC
Confidence 35666666 999999999999999999999999999984 456666665433 2347777775
No 320
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.18 E-value=1e-06 Score=106.42 Aligned_cols=63 Identities=21% Similarity=0.120 Sum_probs=47.4
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccc---------cccccceeeecC
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLI---------IKDSIRDCFVTG 487 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeE---------LrdsIr~VFQTG 487 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+.++ +.+|.+.|++.. .+..|+++||..
T Consensus 274 ~il~~vsl~--i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~ 345 (490)
T PRK10938 274 PILHNLSWQ--VNPGEHWQIVGPNGAGKSTLLSLITGDHPQ-GYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSL 345 (490)
T ss_pred eEEeeceEE--EcCCCEEEEECCCCCCHHHHHHHHcCCCCc-ccCCeEEEecccCCCCCCHHHHHhhceEECHHH
Confidence 456777777 999999999999999999999999998752 135555555432 234578888764
No 321
>KOG0055|consensus
Probab=98.18 E-value=1.4e-06 Score=112.16 Aligned_cols=88 Identities=19% Similarity=0.057 Sum_probs=64.7
Q ss_pred eeceeeeeccccc--ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccc--------cccc
Q psy5893 409 RKFRRKEDIQAKK--HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTL--------IIKD 478 (1182)
Q Consensus 409 ~~~~~~~~~~~~k--~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdge--------ELrd 478 (1182)
.+-.+...|-+.. ..+..+++. +++|+++||||||||||||++.+|.+++.| .+|.+.+++. .++.
T Consensus 352 ef~nV~FsYPsRpdv~Il~g~sl~--i~~G~~valVG~SGsGKST~i~LL~RfydP--~~G~V~idG~di~~~~~~~lr~ 427 (1228)
T KOG0055|consen 352 EFRNVCFSYPSRPDVKILKGVSLK--IPSGQTVALVGPSGSGKSTLIQLLARFYDP--TSGEVLIDGEDIRNLNLKWLRS 427 (1228)
T ss_pred EEEEEEecCCCCCcchhhCCeEEE--eCCCCEEEEECCCCCCHHHHHHHHHHhcCC--CCceEEEcCccchhcchHHHHh
Confidence 3445555555543 344555555 999999999999999999999999999995 4555554444 4467
Q ss_pred ccceeeecCcccccchHHHhhh
Q psy5893 479 SIRDCFVTGKWKASEDASELLR 500 (1182)
Q Consensus 479 sIr~VFQTGkw~~~~~~~~ll~ 500 (1182)
.|+.|+|..-++...-+++++-
T Consensus 428 ~iglV~QePvlF~~tI~eNI~~ 449 (1228)
T KOG0055|consen 428 QIGLVSQEPVLFATTIRENIRY 449 (1228)
T ss_pred hcCeeeechhhhcccHHHHHhc
Confidence 8999999988876666666554
No 322
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.18 E-value=7.9e-07 Score=102.18 Aligned_cols=82 Identities=20% Similarity=0.055 Sum_probs=64.9
Q ss_pred hhcceeceeeeecccccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc--------
Q psy5893 405 IKGERKFRRKEDIQAKKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII-------- 476 (1182)
Q Consensus 405 ~k~~~~~~~~~~~~~~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL-------- 476 (1182)
.+...+-.+...|+.-.-|+..|+++ ++.|++|.|+|.||||||||+.+|+||+. |.+|.+.|++..+
T Consensus 320 ~~~lelrnvrfay~~~~FhvgPiNl~--ikrGelvFliG~NGsGKST~~~LLtGL~~--PqsG~I~ldg~pV~~e~ledY 395 (546)
T COG4615 320 WKTLELRNVRFAYQDNAFHVGPINLT--IKRGELVFLIGGNGSGKSTLAMLLTGLYQ--PQSGEILLDGKPVSAEQLEDY 395 (546)
T ss_pred ccceeeeeeeeccCcccceecceeeE--EecCcEEEEECCCCCcHHHHHHHHhcccC--CCCCceeECCccCCCCCHHHH
Confidence 44555666666766655788889998 99999999999999999999999999999 5667788877633
Q ss_pred ccccceeeecCccc
Q psy5893 477 KDSIRDCFVTGKWK 490 (1182)
Q Consensus 477 rdsIr~VFQTGkw~ 490 (1182)
+..++-+|.+..++
T Consensus 396 R~LfSavFsDyhLF 409 (546)
T COG4615 396 RKLFSAVFSDYHLF 409 (546)
T ss_pred HHHHHHHhhhHhhh
Confidence 45677777776554
No 323
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=98.17 E-value=1.2e-06 Score=107.80 Aligned_cols=65 Identities=17% Similarity=0.053 Sum_probs=51.5
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccc--------ccccccceeeecCccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTL--------IIKDSIRDCFVTGKWK 490 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdge--------ELrdsIr~VFQTGkw~ 490 (1182)
..+..++++ +++|++++|+||||||||||+++|+|++.|+ +|.+.+++. .++..++.++|+...+
T Consensus 356 ~~l~~vs~~--i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~--~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf 428 (555)
T TIGR01194 356 FALGPIDLR--IAQGDIVFIVGENGCGKSTLAKLFCGLYIPQ--EGEILLDGAAVSADSRDDYRDLFSAIFADFHLF 428 (555)
T ss_pred ceeccceEE--EcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCEECCCCCHHHHHhhCcEEccChhhh
Confidence 366777777 9999999999999999999999999999954 455555444 3456788899887655
No 324
>PLN03073 ABC transporter F family; Provisional
Probab=98.16 E-value=1.5e-06 Score=109.76 Aligned_cols=59 Identities=17% Similarity=0.090 Sum_probs=46.5
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccccccccceeeecC
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIKDSIRDCFVTG 487 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeELrdsIr~VFQTG 487 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+.. ...|++++|..
T Consensus 523 ~il~~vsl~--i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p--~~G~I~~~~---~~~igyv~Q~~ 581 (718)
T PLN03073 523 LLFKNLNFG--IDLDSRIAMVGPNGIGKSTILKLISGELQP--SSGTVFRSA---KVRMAVFSQHH 581 (718)
T ss_pred eeEeccEEE--EcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCceEEECC---ceeEEEEeccc
Confidence 356666666 999999999999999999999999999985 455555543 23578888863
No 325
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.16 E-value=1.3e-06 Score=104.68 Aligned_cols=75 Identities=21% Similarity=0.099 Sum_probs=59.5
Q ss_pred ccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccccc---------cccceeeecCccc
Q psy5893 420 KKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIK---------DSIRDCFVTGKWK 490 (1182)
Q Consensus 420 ~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeELr---------dsIr~VFQTGkw~ 490 (1182)
..+++..++++ +.+|++++|+|.||||||||+++|+|.++ |.+|.+.++++.+. ..|..+||.-.+.
T Consensus 20 gV~AL~~v~l~--v~~GEV~aL~GeNGAGKSTLmKiLsGv~~--p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~ 95 (500)
T COG1129 20 GVKALDGVSLT--VRPGEVHALLGENGAGKSTLMKILSGVYP--PDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLV 95 (500)
T ss_pred CceeeccceeE--EeCceEEEEecCCCCCHHHHHHHHhCccc--CCCceEEECCEEccCCCHHHHHhCCcEEEeechhcc
Confidence 34678888888 99999999999999999999999999999 55667777766442 4689999998776
Q ss_pred ccc-hHHHh
Q psy5893 491 ASE-DASEL 498 (1182)
Q Consensus 491 ~~~-~~~~l 498 (1182)
..- -|+++
T Consensus 96 p~LsVaeNi 104 (500)
T COG1129 96 PNLSVAENI 104 (500)
T ss_pred CCccHHHHh
Confidence 542 35554
No 326
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.16 E-value=1.5e-06 Score=108.61 Aligned_cols=59 Identities=19% Similarity=0.145 Sum_probs=46.2
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccccccccceeeec
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIKDSIRDCFVT 486 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeELrdsIr~VFQT 486 (1182)
+..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+... ..+++++|.
T Consensus 325 ~~il~~isl~--i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p--~~G~i~~~~~---~~igy~~Q~ 383 (638)
T PRK10636 325 RIILDSIKLN--LVPGSRIGLLGRNGAGKSTLIKLLAGELAP--VSGEIGLAKG---IKLGYFAQH 383 (638)
T ss_pred eeeeccceEE--ECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEECCC---EEEEEecCc
Confidence 3466667766 999999999999999999999999999984 4555555321 257778875
No 327
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.16 E-value=1.4e-06 Score=89.19 Aligned_cols=66 Identities=20% Similarity=0.135 Sum_probs=50.6
Q ss_pred cccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCC-cccccCccccc------ccccceeeecCccc
Q psy5893 423 HVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPL-SVIKGPVTLII------KDSIRDCFVTGKWK 490 (1182)
Q Consensus 423 ~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~-SGii~wdgeEL------rdsIr~VFQTGkw~ 490 (1182)
-+..++++ |.+|+|+.|+|||||||||||..+.|.+.++-. +|.+.+++..+ .+.++..||+.-++
T Consensus 17 LLa~~n~T--ia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLF 89 (213)
T COG4136 17 LLANVNFT--IAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLF 89 (213)
T ss_pred EEEeeeEE--ecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccc
Confidence 34556666 999999999999999999999999999975322 35555555443 46799999997554
No 328
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.15 E-value=1.5e-06 Score=108.43 Aligned_cols=59 Identities=15% Similarity=0.116 Sum_probs=46.0
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccccccccceeeecC
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIKDSIRDCFVTG 487 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeELrdsIr~VFQTG 487 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+ +..+ .|++++|..
T Consensus 333 ~il~~vsl~--i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p--~~G~i~~-~~~~--~i~y~~q~~ 391 (635)
T PRK11147 333 QLVKDFSAQ--VQRGDKIALIGPNGCGKTTLLKLMLGQLQA--DSGRIHC-GTKL--EVAYFDQHR 391 (635)
T ss_pred EEEcCcEEE--EcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEE-CCCc--EEEEEeCcc
Confidence 456666666 999999999999999999999999999984 4555555 3222 577888753
No 329
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.15 E-value=1.4e-06 Score=106.00 Aligned_cols=46 Identities=22% Similarity=0.093 Sum_probs=37.4
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccC--CCCCCcccccC
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNF--TKTPLSVIKGP 471 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~--~~~~~SGii~w 471 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|++ +|+ +|.+.+
T Consensus 14 ~~l~~is~~--i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~--~G~i~~ 61 (520)
T TIGR03269 14 EVLKNISFT--IEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPT--SGRIIY 61 (520)
T ss_pred EeeeceeEE--EcCCCEEEEECCCCCCHHHHHHHHhhcccCCCC--ceEEEE
Confidence 456677777 9999999999999999999999999997 543 444433
No 330
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.15 E-value=1.4e-06 Score=108.72 Aligned_cols=49 Identities=18% Similarity=0.041 Sum_probs=39.8
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVT 473 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdg 473 (1182)
+..+..++++ +.+|++++|||||||||||||++|+|+++|+ +|.+.+.+
T Consensus 16 ~~il~~is~~--i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~--~G~I~~~~ 64 (635)
T PRK11147 16 APLLDNAELH--IEDNERVCLVGRNGAGKSTLMKILNGEVLLD--DGRIIYEQ 64 (635)
T ss_pred ceeEeCcEEE--ECCCCEEEEECCCCCCHHHHHHHHcCCCCCC--CeEEEeCC
Confidence 3456667777 9999999999999999999999999999854 45555543
No 331
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.14 E-value=1.8e-06 Score=116.40 Aligned_cols=91 Identities=10% Similarity=-0.073 Sum_probs=68.1
Q ss_pred ceeceeeeeccc--ccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCC----------------------
Q psy5893 408 ERKFRRKEDIQA--KKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKT---------------------- 463 (1182)
Q Consensus 408 ~~~~~~~~~~~~--~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~---------------------- 463 (1182)
+.+-.+...|.. ....+..++++ +++|+.+|||||||||||||+++|.|++.|.
T Consensus 1166 I~f~nVsF~Y~~~~~~~vL~~lsl~--i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~ 1243 (1466)
T PTZ00265 1166 IEIMDVNFRYISRPNVPIYKDLTFS--CDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQ 1243 (1466)
T ss_pred EEEEEEEEECCCCCCCccccCeeEE--EcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccc
Confidence 345556666642 23466777777 9999999999999999999999999999973
Q ss_pred ------------------------------CCcccccCccc--------ccccccceeeecCcccccchHHHhhh
Q psy5893 464 ------------------------------PLSVIKGPVTL--------IIKDSIRDCFVTGKWKASEDASELLR 500 (1182)
Q Consensus 464 ------------------------------~~SGii~wdge--------ELrdsIr~VFQTGkw~~~~~~~~ll~ 500 (1182)
+.+|.+.+++. .++..|++|+|...++.+.-.++|.-
T Consensus 1244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~ 1318 (1466)
T PTZ00265 1244 GDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKF 1318 (1466)
T ss_pred cccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhc
Confidence 13555655544 44678999999999987666666543
No 332
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=98.14 E-value=2.5e-06 Score=106.94 Aligned_cols=65 Identities=15% Similarity=0.069 Sum_probs=51.2
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccccccccceeeecCccccc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIKDSIRDCFVTGKWKAS 492 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeELrdsIr~VFQTGkw~~~ 492 (1182)
+..+..++++ +++|++++|+||||||||||+++|+|+++++ .|.+.++. +..+++++|...+...
T Consensus 465 ~~il~~isl~--i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~--~G~i~~~~---~~~i~~v~Q~~~l~~~ 529 (659)
T TIGR00954 465 DVLIESLSFE--VPSGNHLLICGPNGCGKSSLFRILGELWPVY--GGRLTKPA---KGKLFYVPQRPYMTLG 529 (659)
T ss_pred CeeeecceEE--ECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCeEeecC---CCcEEEECCCCCCCCc
Confidence 3567777777 9999999999999999999999999999854 45454432 4578999998765543
No 333
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.14 E-value=1.6e-06 Score=108.21 Aligned_cols=49 Identities=22% Similarity=0.144 Sum_probs=40.4
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVT 473 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdg 473 (1182)
+..+..++++ +.+|++++|||||||||||||++|+|+++| .+|.+.+.+
T Consensus 14 ~~~l~~vs~~--i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~p--d~G~I~~~~ 62 (638)
T PRK10636 14 RVLLDNATAT--INPGQKVGLVGKNGCGKSTLLALLKNEISA--DGGSYTFPG 62 (638)
T ss_pred ceeecCcEEE--ECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEecC
Confidence 3466777777 999999999999999999999999999985 455555544
No 334
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.13 E-value=1.4e-06 Score=107.09 Aligned_cols=59 Identities=22% Similarity=0.155 Sum_probs=47.4
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccccccccceeeecC
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIKDSIRDCFVTG 487 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeELrdsIr~VFQTG 487 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.|.. . -.|++++|..
T Consensus 336 ~~l~~isl~--i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p--~~G~i~~~~-~--~~i~~v~q~~ 394 (552)
T TIGR03719 336 LLIDDLSFK--LPPGGIVGVIGPNGAGKSTLFRMITGQEQP--DSGTIKIGE-T--VKLAYVDQSR 394 (552)
T ss_pred eeeccceEE--EcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCeEEEECC-c--eEEEEEeCCc
Confidence 466667766 999999999999999999999999999984 456666632 2 2588899874
No 335
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.12 E-value=1.5e-06 Score=106.92 Aligned_cols=59 Identities=19% Similarity=0.150 Sum_probs=47.3
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccccccccceeeecC
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIKDSIRDCFVTG 487 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeELrdsIr~VFQTG 487 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+.. . -.|++++|..
T Consensus 338 ~~l~~isl~--i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p--~~G~i~~~~-~--~~i~~v~q~~ 396 (556)
T PRK11819 338 LLIDDLSFS--LPPGGIVGIIGPNGAGKSTLFKMITGQEQP--DSGTIKIGE-T--VKLAYVDQSR 396 (556)
T ss_pred eeecceeEE--EcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECC-c--eEEEEEeCch
Confidence 466777777 999999999999999999999999999984 456665532 2 2588888874
No 336
>PLN03211 ABC transporter G-25; Provisional
Probab=98.12 E-value=1.3e-06 Score=109.53 Aligned_cols=68 Identities=18% Similarity=0.115 Sum_probs=53.2
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc----ccccceeeecCccc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII----KDSIRDCFVTGKWK 490 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL----rdsIr~VFQTGkw~ 490 (1182)
+..+..++++ +++|++++|+|||||||||||++|+|+.++...+|.+.+++..+ ...+++++|.....
T Consensus 81 ~~iL~~vs~~--i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~ 152 (659)
T PLN03211 81 RTILNGVTGM--ASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILY 152 (659)
T ss_pred CeeeeCCEEE--EECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccC
Confidence 4466777777 99999999999999999999999999998543467777777643 34577888775443
No 337
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.11 E-value=2.3e-06 Score=97.06 Aligned_cols=65 Identities=17% Similarity=0.075 Sum_probs=51.0
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCC---CcccccCccccc------------ccccceeee
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTP---LSVIKGPVTLII------------KDSIRDCFV 485 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~---~SGii~wdgeEL------------rdsIr~VFQ 485 (1182)
..++..|+++ +.+|+++||||.|||||||+.++|+||++..+ .+|.+.+++.++ ...|+++||
T Consensus 18 v~av~~vs~~--i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ 95 (316)
T COG0444 18 VKAVDGVSFE--LKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQ 95 (316)
T ss_pred EEEEeceeEE--EcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEc
Confidence 3567777777 99999999999999999999999999998322 235666665522 247999999
Q ss_pred cC
Q psy5893 486 TG 487 (1182)
Q Consensus 486 TG 487 (1182)
+.
T Consensus 96 ~p 97 (316)
T COG0444 96 DP 97 (316)
T ss_pred Cc
Confidence 95
No 338
>PLN03130 ABC transporter C family member; Provisional
Probab=98.11 E-value=2.5e-06 Score=116.08 Aligned_cols=87 Identities=10% Similarity=-0.054 Sum_probs=66.6
Q ss_pred ceeceeeeecccc-cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccc--------cccc
Q psy5893 408 ERKFRRKEDIQAK-KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTL--------IIKD 478 (1182)
Q Consensus 408 ~~~~~~~~~~~~~-k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdge--------ELrd 478 (1182)
+.+-.+...|... ..++.+++++ +++|+.+||||+||||||||+++|.|++.| .+|.+.+++. .++.
T Consensus 1238 I~f~nVsf~Y~~~~~~VL~~is~~--I~~GekVaIVGrSGSGKSTLl~lL~rl~~p--~~G~I~IDG~dI~~i~l~~LR~ 1313 (1622)
T PLN03130 1238 IKFEDVVLRYRPELPPVLHGLSFE--ISPSEKVGIVGRTGAGKSSMLNALFRIVEL--ERGRILIDGCDISKFGLMDLRK 1313 (1622)
T ss_pred EEEEEEEEEeCCCCCceecceeEE--EcCCCEEEEECCCCCCHHHHHHHHhCcCCC--CCceEEECCEecccCCHHHHHh
Confidence 3455566666433 3467777777 999999999999999999999999999995 4555555544 4567
Q ss_pred ccceeeecCcccccchHHHh
Q psy5893 479 SIRDCFVTGKWKASEDASEL 498 (1182)
Q Consensus 479 sIr~VFQTGkw~~~~~~~~l 498 (1182)
.|+.+.|+.-++.+.-.++|
T Consensus 1314 ~IsiVpQdp~LF~GTIreNL 1333 (1622)
T PLN03130 1314 VLGIIPQAPVLFSGTVRFNL 1333 (1622)
T ss_pred ccEEECCCCccccccHHHHh
Confidence 89999999988876555554
No 339
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.11 E-value=2e-06 Score=117.43 Aligned_cols=66 Identities=17% Similarity=0.089 Sum_probs=52.6
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc-------ccccceeeecCccc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII-------KDSIRDCFVTGKWK 490 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL-------rdsIr~VFQTGkw~ 490 (1182)
+.++..+++. +++|+++||+|||||||||||++|+|++.| .+|.+.+.+..+ +..|++|+|...+.
T Consensus 1952 ~~aL~~ISf~--I~~GEi~gLLG~NGAGKTTLlkmL~Gll~p--tsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~ 2024 (2272)
T TIGR01257 1952 SPAVDRLCVG--VRPGECFGLLGVNGAGKTTTFKMLTGDTTV--TSGDATVAGKSILTNISDVHQNMGYCPQFDAID 2024 (2272)
T ss_pred ceEEEeeEEE--EcCCcEEEEECCCCCcHHHHHHHHhCCCCC--CccEEEECCEECcchHHHHhhhEEEEeccccCC
Confidence 3467777777 999999999999999999999999999994 556666655443 45689999986543
No 340
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.10 E-value=1.4e-06 Score=93.84 Aligned_cols=63 Identities=17% Similarity=0.141 Sum_probs=50.7
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc--------ccccceeeecC
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII--------KDSIRDCFVTG 487 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL--------rdsIr~VFQTG 487 (1182)
+.++..++++ +..|+|+.|||.|||||||||+.|+|-+.+ .+|.+.+++.++ ...+..+||+.
T Consensus 19 k~~l~~~sL~--I~~g~FvtViGsNGAGKSTlln~iaG~l~~--t~G~I~Idg~dVtk~~~~~RA~~larVfQdp 89 (263)
T COG1101 19 KRALNGLSLE--IAEGDFVTVIGSNGAGKSTLLNAIAGDLKP--TSGQILIDGVDVTKKSVAKRANLLARVFQDP 89 (263)
T ss_pred HHHHhcCcee--ecCCceEEEEcCCCccHHHHHHHhhCcccc--CCceEEECceecccCCHHHHhhHHHHHhcch
Confidence 4567777777 999999999999999999999999999994 556666655544 34677888875
No 341
>PTZ00243 ABC transporter; Provisional
Probab=98.10 E-value=2.6e-06 Score=115.63 Aligned_cols=87 Identities=11% Similarity=-0.059 Sum_probs=66.8
Q ss_pred ceeceeeeeccccc-ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcc--------ccccc
Q psy5893 408 ERKFRRKEDIQAKK-HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVT--------LIIKD 478 (1182)
Q Consensus 408 ~~~~~~~~~~~~~k-~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdg--------eELrd 478 (1182)
+.+-.+...|.... .++..++++ +++|+.+||||+||||||||+++|.|++.++ +|.+.+++ .+++.
T Consensus 1309 I~f~nVsf~Y~~~~~~vL~~vsf~--I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~--~G~I~IDG~di~~i~l~~LR~ 1384 (1560)
T PTZ00243 1309 LVFEGVQMRYREGLPLVLRGVSFR--IAPREKVGIVGRTGSGKSTLLLTFMRMVEVC--GGEIRVNGREIGAYGLRELRR 1384 (1560)
T ss_pred EEEEEEEEEeCCCCCceeecceEE--ECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCEEcccCCHHHHHh
Confidence 44556666665443 367777877 9999999999999999999999999999954 45555444 35568
Q ss_pred ccceeeecCcccccchHHHh
Q psy5893 479 SIRDCFVTGKWKASEDASEL 498 (1182)
Q Consensus 479 sIr~VFQTGkw~~~~~~~~l 498 (1182)
.|+.++|+.-++.+.-.++|
T Consensus 1385 ~I~iVpQdp~LF~gTIreNI 1404 (1560)
T PTZ00243 1385 QFSMIPQDPVLFDGTVRQNV 1404 (1560)
T ss_pred cceEECCCCccccccHHHHh
Confidence 89999999988876555554
No 342
>PLN03232 ABC transporter C family member; Provisional
Probab=98.09 E-value=2.5e-06 Score=115.50 Aligned_cols=87 Identities=10% Similarity=-0.040 Sum_probs=66.2
Q ss_pred ceeceeeeecccc-cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccc--------cccc
Q psy5893 408 ERKFRRKEDIQAK-KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTL--------IIKD 478 (1182)
Q Consensus 408 ~~~~~~~~~~~~~-k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdge--------ELrd 478 (1182)
+.+-.+...|... ...+.+++++ +++|+.+||||+||||||||+++|.|++.|+ +|.+.+++. .++.
T Consensus 1235 I~f~nVsf~Y~~~~~~vL~~isl~--I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~--~G~I~IdG~di~~i~~~~lR~ 1310 (1495)
T PLN03232 1235 IKFEDVHLRYRPGLPPVLHGLSFF--VSPSEKVGVVGRTGAGKSSMLNALFRIVELE--KGRIMIDDCDVAKFGLTDLRR 1310 (1495)
T ss_pred EEEEEEEEEECCCCCcccccceEE--EcCCCEEEEECCCCCCHHHHHHHHhCCCcCC--CceEEECCEEhhhCCHHHHHh
Confidence 3455566666433 3567777777 9999999999999999999999999999954 555555544 4567
Q ss_pred ccceeeecCcccccchHHHh
Q psy5893 479 SIRDCFVTGKWKASEDASEL 498 (1182)
Q Consensus 479 sIr~VFQTGkw~~~~~~~~l 498 (1182)
.|+.+.|+.-++.+.-.++|
T Consensus 1311 ~i~iVpQdp~LF~gTIr~NL 1330 (1495)
T PLN03232 1311 VLSIIPQSPVLFSGTVRFNI 1330 (1495)
T ss_pred hcEEECCCCeeeCccHHHHc
Confidence 89999999988866555554
No 343
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.08 E-value=2.6e-06 Score=114.82 Aligned_cols=85 Identities=12% Similarity=-0.011 Sum_probs=60.9
Q ss_pred eceeeeecccc--cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCc-cc--------cccc
Q psy5893 410 KFRRKEDIQAK--KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPV-TL--------IIKD 478 (1182)
Q Consensus 410 ~~~~~~~~~~~--k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wd-ge--------ELrd 478 (1182)
+-.+...|... ...+..++++ +++|+++||||||||||||||++|+|++.|+ +|.+.++ +. .++.
T Consensus 385 ~~nVsf~Y~~~~~~~vL~~isl~--i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~--~G~I~i~~g~~i~~~~~~~lr~ 460 (1466)
T PTZ00265 385 FKNVRFHYDTRKDVEIYKDLNFT--LTEGKTYAFVGESGCGKSTILKLIERLYDPT--EGDIIINDSHNLKDINLKWWRS 460 (1466)
T ss_pred EEEEEEEcCCCCCCceeccceEE--EcCCCEEEEECCCCCCHHHHHHHHHHhccCC--CCeEEEeCCcchhhCCHHHHHH
Confidence 44444444322 3467777777 9999999999999999999999999999954 4444442 22 3456
Q ss_pred ccceeeecCcccccchHHHh
Q psy5893 479 SIRDCFVTGKWKASEDASEL 498 (1182)
Q Consensus 479 sIr~VFQTGkw~~~~~~~~l 498 (1182)
.|++++|...++...-.++|
T Consensus 461 ~Ig~V~Q~~~LF~~TI~eNI 480 (1466)
T PTZ00265 461 KIGVVSQDPLLFSNSIKNNI 480 (1466)
T ss_pred hccEecccccchhccHHHHH
Confidence 79999999887754444444
No 344
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=98.07 E-value=4.3e-07 Score=96.70 Aligned_cols=69 Identities=17% Similarity=0.007 Sum_probs=54.4
Q ss_pred ccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccccc---------cccceeeecCccc
Q psy5893 420 KKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIK---------DSIRDCFVTGKWK 490 (1182)
Q Consensus 420 ~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeELr---------dsIr~VFQTGkw~ 490 (1182)
+++.+.+|+++ +.+||+|+|+|||||||||.+.|+.||+.| .+|.+.+++.++. -.|++..|....+
T Consensus 16 kr~Vv~~Vsl~--v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~--d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIF 91 (243)
T COG1137 16 KRKVVNDVSLE--VNSGEIVGLLGPNGAGKTTTFYMIVGLVRP--DSGKILLDDEDITKLPMHKRARLGIGYLPQEASIF 91 (243)
T ss_pred CeeeeeeeeEE--EcCCcEEEEECCCCCCceeEEEEEEEEEec--CCceEEECCcccccCChHHHhhcCcccccccchHh
Confidence 34677888888 999999999999999999999999999995 4555555555442 3578888887766
Q ss_pred cc
Q psy5893 491 AS 492 (1182)
Q Consensus 491 ~~ 492 (1182)
..
T Consensus 92 r~ 93 (243)
T COG1137 92 RK 93 (243)
T ss_pred hc
Confidence 43
No 345
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.05 E-value=2.9e-06 Score=102.77 Aligned_cols=49 Identities=16% Similarity=0.066 Sum_probs=40.7
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTL 474 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdge 474 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++.
T Consensus 38 ~IL~nVSfs--I~~GEivgIiGpNGSGKSTLLkiLaGLl~P--~sGeI~I~G~ 86 (549)
T PRK13545 38 YALNNISFE--VPEGEIVGIIGLNGSGKSTLSNLIAGVTMP--NKGTVDIKGS 86 (549)
T ss_pred eEEeeeEEE--EeCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CceEEEECCE
Confidence 356667776 999999999999999999999999999984 4566666554
No 346
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.05 E-value=3.1e-06 Score=94.06 Aligned_cols=56 Identities=20% Similarity=0.193 Sum_probs=44.9
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc------------ccccceeeecCccc
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII------------KDSIRDCFVTGKWK 490 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL------------rdsIr~VFQTGkw~ 490 (1182)
.+...++||-|+||||||||||||+||..|+ .|.+..++.-+ ..+|+++||+..++
T Consensus 21 ~p~~GvTAlFG~SGsGKTslin~IaGL~rPd--eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLF 88 (352)
T COG4148 21 LPARGITALFGPSGSGKTSLINMIAGLTRPD--EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLF 88 (352)
T ss_pred CCCCceEEEecCCCCChhhHHHHHhccCCcc--ccEEEECCEEeecccCCcccChhhheeeeEeeccccc
Confidence 6666899999999999999999999999954 44454444322 47899999998776
No 347
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.03 E-value=2.6e-06 Score=87.98 Aligned_cols=64 Identities=19% Similarity=0.117 Sum_probs=47.9
Q ss_pred ccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCccccc-----Cc-------ccccccccceeeecCcc
Q psy5893 426 QVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKG-----PV-------TLIIKDSIRDCFVTGKW 489 (1182)
Q Consensus 426 ~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~-----wd-------geELrdsIr~VFQTGkw 489 (1182)
..|+.+.++.|+.++++||||+|||||||.|+-|..|.+|...+- +. ..+++..++++||...+
T Consensus 18 lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~l 93 (242)
T COG4161 18 LFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNL 93 (242)
T ss_pred eeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhcc
Confidence 334444499999999999999999999999999988655542211 11 12456789999999864
No 348
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.03 E-value=2.6e-06 Score=90.09 Aligned_cols=35 Identities=31% Similarity=0.456 Sum_probs=30.5
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHH
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLI 457 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~ 457 (1182)
..++..++++ +++|++++|+|||||||||||++|.
T Consensus 8 ~~~l~~isl~--i~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 8 VHNLQNLDVS--IPLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred eeeecceEEE--EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3456667777 9999999999999999999999985
No 349
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.02 E-value=4.5e-06 Score=113.34 Aligned_cols=87 Identities=14% Similarity=-0.086 Sum_probs=66.4
Q ss_pred ceeceeeeecccc-cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccc--------cccc
Q psy5893 408 ERKFRRKEDIQAK-KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTL--------IIKD 478 (1182)
Q Consensus 408 ~~~~~~~~~~~~~-k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdge--------ELrd 478 (1182)
+.+-.+...|... ...+..++++ +++|+.+||||+||||||||+++|.|++.| .+|.+.+++. .++.
T Consensus 1285 I~f~nVsf~Y~~~~~~vL~~is~~--I~~GekiaIVGrTGsGKSTL~~lL~rl~~~--~~G~I~IdG~dI~~i~~~~LR~ 1360 (1522)
T TIGR00957 1285 VEFRNYCLRYREDLDLVLRHINVT--IHGGEKVGIVGRTGAGKSSLTLGLFRINES--AEGEIIIDGLNIAKIGLHDLRF 1360 (1522)
T ss_pred EEEEEEEEEeCCCCcccccceeEE--EcCCCEEEEECCCCCCHHHHHHHHhcCccC--CCCeEEECCEEccccCHHHHHh
Confidence 3455566666433 3467777777 999999999999999999999999999995 4455555554 4567
Q ss_pred ccceeeecCcccccchHHHh
Q psy5893 479 SIRDCFVTGKWKASEDASEL 498 (1182)
Q Consensus 479 sIr~VFQTGkw~~~~~~~~l 498 (1182)
.|+.+.|+.-++.+.-.++|
T Consensus 1361 ~i~iVpQdp~LF~gTIr~NL 1380 (1522)
T TIGR00957 1361 KITIIPQDPVLFSGSLRMNL 1380 (1522)
T ss_pred cCeEECCCCcccCccHHHHc
Confidence 89999999988876555554
No 350
>PRK13409 putative ATPase RIL; Provisional
Probab=98.02 E-value=4.4e-06 Score=103.46 Aligned_cols=42 Identities=17% Similarity=0.282 Sum_probs=35.4
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLS 466 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~S 466 (1182)
..+..++ .+++|++++|||||||||||||++|+|+++|+.|.
T Consensus 88 ~~L~~l~---~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~ 129 (590)
T PRK13409 88 FKLYGLP---IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGD 129 (590)
T ss_pred eeEecCC---cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCcc
Confidence 3566665 48999999999999999999999999999965443
No 351
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.02 E-value=3.6e-06 Score=114.97 Aligned_cols=66 Identities=18% Similarity=0.064 Sum_probs=52.6
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc-------ccccceeeecCccc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII-------KDSIRDCFVTGKWK 490 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL-------rdsIr~VFQTGkw~ 490 (1182)
+.++..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+.+.++ +..|++|+|...+.
T Consensus 943 k~aL~~lsl~--I~~Gei~aLLG~NGAGKSTLLkiLaGLl~P--tsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~ 1015 (2272)
T TIGR01257 943 RPAVDRLNIT--FYENQITAFLGHNGAGKTTTLSILTGLLPP--TSGTVLVGGKDIETNLDAVRQSLGMCPQHNILF 1015 (2272)
T ss_pred ceEEEeeEEE--EcCCcEEEEECCCCChHHHHHHHHhcCCCC--CceEEEECCEECcchHHHHhhcEEEEecCCcCC
Confidence 4567777777 999999999999999999999999999995 455555555433 45689999986544
No 352
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.01 E-value=1.5e-06 Score=103.49 Aligned_cols=74 Identities=12% Similarity=0.049 Sum_probs=51.3
Q ss_pred eceeeeeccccc-ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc-------ccccc
Q psy5893 410 KFRRKEDIQAKK-HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII-------KDSIR 481 (1182)
Q Consensus 410 ~~~~~~~~~~~k-~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL-------rdsIr 481 (1182)
..+++...+.+- .++..++++ +++|++++|+|||||||||||+ +|+..++.| +.+.+++.++ ...++
T Consensus 7 Ylhi~r~Ie~~l~~vL~~Vsl~--i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sG-g~I~ldg~~~~~~~~~ai~~LR 81 (504)
T TIGR03238 7 YLYVKRKIQTDLERILVKFNKE--LPSSSLLFLCGSSGDGKSEILA--ENKRKFSEG-YEFFLDATHSFSPNKNAMETLD 81 (504)
T ss_pred hheechHHHHHHHHHHhCCcee--ecCCCEEEEECCCCCCHHHHHh--cCCCCCCCC-CEEEECCEECCCCCHHHHHHHH
Confidence 445555555432 456677776 9999999999999999999999 667664333 2455554433 35677
Q ss_pred eeeecCc
Q psy5893 482 DCFVTGK 488 (1182)
Q Consensus 482 ~VFQTGk 488 (1182)
++||..+
T Consensus 82 ~VFQ~fn 88 (504)
T TIGR03238 82 EIFDGFN 88 (504)
T ss_pred HHHHhhh
Confidence 8888864
No 353
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=97.98 E-value=5.9e-06 Score=103.51 Aligned_cols=66 Identities=18% Similarity=0.037 Sum_probs=52.7
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc------------ccccceeeecCcc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII------------KDSIRDCFVTGKW 489 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL------------rdsIr~VFQTGkw 489 (1182)
..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+++..+ +..++++||...+
T Consensus 22 ~il~~vs~~--i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l 97 (648)
T PRK10535 22 EVLKGISLD--IYAGEMVAIVGASGSGKSTLMNILGCLDKP--TSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHL 97 (648)
T ss_pred eeeeeeEEE--EcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCccc
Confidence 456777777 999999999999999999999999999994 456666665543 2468899998766
Q ss_pred cc
Q psy5893 490 KA 491 (1182)
Q Consensus 490 ~~ 491 (1182)
..
T Consensus 98 ~~ 99 (648)
T PRK10535 98 LS 99 (648)
T ss_pred CC
Confidence 54
No 354
>PRK13409 putative ATPase RIL; Provisional
Probab=97.98 E-value=4.3e-06 Score=103.60 Aligned_cols=56 Identities=20% Similarity=0.079 Sum_probs=44.6
Q ss_pred ccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccccccccceeeecCc
Q psy5893 424 VPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIKDSIRDCFVTGK 488 (1182)
Q Consensus 424 i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeELrdsIr~VFQTGk 488 (1182)
+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+. -.+++++|...
T Consensus 355 l~~~s~~--i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p--~~G~I~~~-----~~i~y~~Q~~~ 410 (590)
T PRK13409 355 LEVEGGE--IYEGEVIGIVGPNGIGKTTFAKLLAGVLKP--DEGEVDPE-----LKISYKPQYIK 410 (590)
T ss_pred EEecceE--ECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEEe-----eeEEEeccccc
Confidence 5555555 999999999999999999999999999985 45555554 25778888754
No 355
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.96 E-value=6.2e-06 Score=86.16 Aligned_cols=39 Identities=28% Similarity=0.401 Sum_probs=33.9
Q ss_pred CCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCc
Q psy5893 428 DRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLS 466 (1182)
Q Consensus 428 d~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~S 466 (1182)
+.++.+.||++++|||.|||||||||+||++.+.|+.|.
T Consensus 24 ~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~ 62 (258)
T COG4107 24 DVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGT 62 (258)
T ss_pred ccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCe
Confidence 444559999999999999999999999999999965554
No 356
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=97.94 E-value=6.3e-06 Score=99.57 Aligned_cols=64 Identities=22% Similarity=0.106 Sum_probs=51.2
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCC--CcccccCccccc------------ccccceeeecC
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTP--LSVIKGPVTLII------------KDSIRDCFVTG 487 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~--~SGii~wdgeEL------------rdsIr~VFQTG 487 (1182)
.++.++++. +.+||++||||.|||||||++++|.|++++.+ .+|.+.+++.++ ...|+++||..
T Consensus 23 ~~v~~vsf~--v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p 100 (539)
T COG1123 23 PAVRDVSFE--VEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDP 100 (539)
T ss_pred eeeecceEE--ecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCc
Confidence 456666666 99999999999999999999999999999643 247776666533 25799999984
No 357
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=97.93 E-value=6.1e-06 Score=102.80 Aligned_cols=69 Identities=22% Similarity=0.152 Sum_probs=52.9
Q ss_pred ccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCC-CCcccccCccccc-----ccccceeeecCccc
Q psy5893 420 KKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKT-PLSVIKGPVTLII-----KDSIRDCFVTGKWK 490 (1182)
Q Consensus 420 ~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~-~~SGii~wdgeEL-----rdsIr~VFQTGkw~ 490 (1182)
.+..+..+++. +++|++++|+|||||||||||++|+|..++. ..+|.+.+++..+ +..+++++|.....
T Consensus 37 ~~~iL~~vs~~--i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~ 111 (617)
T TIGR00955 37 RKHLLKNVSGV--AKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFI 111 (617)
T ss_pred ccccccCCEEE--EeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccC
Confidence 34566777777 9999999999999999999999999998742 1256676666543 45678888876444
No 358
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=97.92 E-value=7.6e-06 Score=87.85 Aligned_cols=56 Identities=20% Similarity=0.124 Sum_probs=40.7
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCc-------ccccCcccc-----cccccceeeecCcc
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLS-------VIKGPVTLI-----IKDSIRDCFVTGKW 489 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~S-------Gii~wdgeE-----LrdsIr~VFQTGkw 489 (1182)
+.+| +++|+|||||||||||++|+|++.+..+. +.+.+.+.. ....++.+||....
T Consensus 20 ~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~ 87 (197)
T cd03278 20 FPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDG 87 (197)
T ss_pred cCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCC
Confidence 7789 99999999999999999999998643221 122232322 24678999998754
No 359
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=97.92 E-value=1.5e-06 Score=107.85 Aligned_cols=51 Identities=10% Similarity=0.261 Sum_probs=34.7
Q ss_pred hhccchhhhhhhhh--hcccccccCCCC-CCcccccccccccceEEecccCccc
Q psy5893 15 KISRNSLCINIWNW--FTKRVYPVCTAP-NNEGIHRQEFEIEPITFIECNNDIN 65 (1182)
Q Consensus 15 ~~~~n~l~~~l~~~--~tr~l~Pv~~~~-~n~~~~~~~~~~k~lt~i~c~~~~~ 65 (1182)
|+|+-.|=..|++. +.+++.||+||. ...-.......++.+++||||+++|
T Consensus 12 alcA~kiL~~Llk~d~I~~~l~PV~gy~el~~~~~~~~~~~~~vilIncGa~~d 65 (622)
T PF02724_consen 12 ALCACKILTSLLKSDNIQYSLVPVSGYSELERAYEELDEDIKSVILINCGATVD 65 (622)
T ss_pred HHHHHHHHHHHHHhcCCCeeEEEeCCHHHHHHHHHHHhhhhceEEEEecCchhh
Confidence 45554444556666 999999999998 1111111145567899999999986
No 360
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=97.90 E-value=8.9e-06 Score=85.16 Aligned_cols=46 Identities=20% Similarity=0.023 Sum_probs=39.1
Q ss_pred cCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccc
Q psy5893 427 VDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLI 475 (1182)
Q Consensus 427 vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeE 475 (1182)
..++..+..|+++-+||||||||||||..|+|+++ ++|.+.+.+..
T Consensus 16 ~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~---~sGsi~~~G~~ 61 (248)
T COG4138 16 GPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GSGSIQFAGQP 61 (248)
T ss_pred cccccccccceEEEEECCCCccHHHHHHHHhCCCC---CCceEEECCcc
Confidence 45666689999999999999999999999999997 67777666553
No 361
>KOG0055|consensus
Probab=97.89 E-value=1.2e-05 Score=103.91 Aligned_cols=90 Identities=13% Similarity=-0.033 Sum_probs=66.9
Q ss_pred ceeceeeeecccccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcc--------cccccc
Q psy5893 408 ERKFRRKEDIQAKKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVT--------LIIKDS 479 (1182)
Q Consensus 408 ~~~~~~~~~~~~~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdg--------eELrds 479 (1182)
+.+-++...|.+..++.-.-+++..+++|+.+||||||||||||.+.+|-++|.|. .|.+.+++ .-++..
T Consensus 988 I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~--~G~V~IDg~dik~lnl~~LR~~ 1065 (1228)
T KOG0055|consen 988 IEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPD--AGKVKIDGVDIKDLNLKWLRKQ 1065 (1228)
T ss_pred EEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCC--CCeEEECCcccccCCHHHHHHh
Confidence 45666777776554443333555559999999999999999999999999999954 44444444 445678
Q ss_pred cceeeecCcccccchHHHhh
Q psy5893 480 IRDCFVTGKWKASEDASELL 499 (1182)
Q Consensus 480 Ir~VFQTGkw~~~~~~~~ll 499 (1182)
|+.|-|..-++...-.++++
T Consensus 1066 i~lVsQEP~LF~~TIrENI~ 1085 (1228)
T KOG0055|consen 1066 IGLVSQEPVLFNGTIRENIA 1085 (1228)
T ss_pred cceeccCchhhcccHHHHHh
Confidence 99999999888776666654
No 362
>PLN03140 ABC transporter G family member; Provisional
Probab=97.86 E-value=8.2e-06 Score=109.95 Aligned_cols=68 Identities=16% Similarity=0.159 Sum_probs=52.5
Q ss_pred ccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCC-CCcccccCccccc-----ccccceeeecCcc
Q psy5893 420 KKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKT-PLSVIKGPVTLII-----KDSIRDCFVTGKW 489 (1182)
Q Consensus 420 ~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~-~~SGii~wdgeEL-----rdsIr~VFQTGkw 489 (1182)
.+..+.++++. +++|++++|+|||||||||||++|+|++.++ ..+|.+.+++..+ +..+++++|....
T Consensus 177 ~~~IL~~vs~~--i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~ 250 (1470)
T PLN03140 177 KLTILKDASGI--IKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVH 250 (1470)
T ss_pred cceeccCCeEE--EeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccC
Confidence 34566777666 9999999999999999999999999999743 1257777776543 3568888887533
No 363
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=97.85 E-value=1.4e-05 Score=108.44 Aligned_cols=84 Identities=11% Similarity=-0.017 Sum_probs=64.3
Q ss_pred eceeeeeccc-ccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccc--------cccccc
Q psy5893 410 KFRRKEDIQA-KKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTL--------IIKDSI 480 (1182)
Q Consensus 410 ~~~~~~~~~~-~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdge--------ELrdsI 480 (1182)
+-.+...|.. ....+..++++ +++|+.+||||+||||||||+++|.|+++ .+|.+.+++. .++..|
T Consensus 1220 f~nVs~~Y~~~~~~vL~~is~~--I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~di~~i~~~~lR~~i 1294 (1490)
T TIGR01271 1220 VQGLTAKYTEAGRAVLQDLSFS--VEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVSWNSVTLQTWRKAF 1294 (1490)
T ss_pred EEEEEEEeCCCCcceeeccEEE--EcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEcccCCHHHHHhce
Confidence 4445555543 24567777777 99999999999999999999999999986 2466655554 456789
Q ss_pred ceeeecCcccccchHHHh
Q psy5893 481 RDCFVTGKWKASEDASEL 498 (1182)
Q Consensus 481 r~VFQTGkw~~~~~~~~l 498 (1182)
++++|+.-++.+.-.++|
T Consensus 1295 s~IpQdp~LF~GTIR~NL 1312 (1490)
T TIGR01271 1295 GVIPQKVFIFSGTFRKNL 1312 (1490)
T ss_pred EEEeCCCccCccCHHHHh
Confidence 999999988876555554
No 364
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.85 E-value=6.6e-06 Score=80.42 Aligned_cols=33 Identities=24% Similarity=0.208 Sum_probs=28.5
Q ss_pred cccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHH
Q psy5893 423 HVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLI 457 (1182)
Q Consensus 423 ~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~ 457 (1182)
++..+++. +.+|++++|+||||||||||+++|.
T Consensus 4 aL~~vsl~--i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 4 SLHGVLVD--VYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEeeEEE--EcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 44555555 8999999999999999999999987
No 365
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.83 E-value=1.6e-05 Score=97.12 Aligned_cols=64 Identities=19% Similarity=0.071 Sum_probs=47.0
Q ss_pred ccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccccccccceeeecCccc
Q psy5893 420 KKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIKDSIRDCFVTGKWK 490 (1182)
Q Consensus 420 ~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeELrdsIr~VFQTGkw~ 490 (1182)
.+..+..++++ +.+|+.+||||+|||||||||++|+|...| .+|.+.+... -.++++-|.-...
T Consensus 15 ~~~l~~~~~l~--~~~G~riGLvG~NGaGKSTLLkilaG~~~~--~~G~i~~~~~---~~v~~l~Q~~~~~ 78 (530)
T COG0488 15 DRPLLENVSLT--LNPGERIGLVGRNGAGKSTLLKILAGELEP--DSGEVTRPKG---LRVGYLSQEPPLD 78 (530)
T ss_pred CceeecCCcce--eCCCCEEEEECCCCCCHHHHHHHHcCCCcC--CCCeEeecCC---ceEEEeCCCCCcC
Confidence 34566777777 999999999999999999999999999985 4454444322 2455555665544
No 366
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=97.82 E-value=1.4e-05 Score=108.42 Aligned_cols=68 Identities=13% Similarity=0.040 Sum_probs=52.7
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccccccccceeeecCcccccchHHHh
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIKDSIRDCFVTGKWKASEDASEL 498 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeELrdsIr~VFQTGkw~~~~~~~~l 498 (1182)
..+.+++++ +++|++++|+|||||||||||++|+|++++ .+|.+.+++ .|++|+|+..+....-.+++
T Consensus 440 ~~l~~i~l~--i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~--~~G~i~~~g-----~iayv~Q~~~l~~~Ti~eNI 507 (1490)
T TIGR01271 440 PVLKNISFK--LEKGQLLAVAGSTGSGKSSLLMMIMGELEP--SEGKIKHSG-----RISFSPQTSWIMPGTIKDNI 507 (1490)
T ss_pred cceeeeEEE--ECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECC-----EEEEEeCCCccCCccHHHHH
Confidence 356677777 999999999999999999999999999994 456665554 58999998765543333444
No 367
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=97.81 E-value=4.2e-06 Score=88.99 Aligned_cols=67 Identities=15% Similarity=0.090 Sum_probs=51.6
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcc---------ccc-ccccceeeecCccc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVT---------LII-KDSIRDCFVTGKWK 490 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdg---------eEL-rdsIr~VFQTGkw~ 490 (1182)
..+++.++++ +.+|+.-+|||||||||||+|-+|+|..+|+.|+ ..+.+ .++ +..|+..||+...+
T Consensus 18 F~Aln~ls~~--v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~--v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVf 93 (249)
T COG4674 18 FKALNDLSFS--VDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGE--VLFDGDTDLTKLPEHRIARAGIGRKFQKPTVF 93 (249)
T ss_pred eeeeeeeEEE--ecCCeEEEEECCCCCCceeeeeeecccCCCCcce--EEEcCchhhccCCHHHHHHhccCccccCCeeh
Confidence 3566677776 9999999999999999999999999999965443 33333 222 35789999998765
Q ss_pred c
Q psy5893 491 A 491 (1182)
Q Consensus 491 ~ 491 (1182)
.
T Consensus 94 e 94 (249)
T COG4674 94 E 94 (249)
T ss_pred h
Confidence 4
No 368
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=2e-05 Score=91.86 Aligned_cols=85 Identities=18% Similarity=0.049 Sum_probs=68.3
Q ss_pred ceeceeeeecccccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccc--------cccc
Q psy5893 408 ERKFRRKEDIQAKKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLI--------IKDS 479 (1182)
Q Consensus 408 ~~~~~~~~~~~~~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeE--------Lrds 479 (1182)
+.+..+...+...+..+..++++ +++|..++||||||+||||++++|.+++.+ .+|.+.+++.+ ++..
T Consensus 263 v~F~~V~F~y~~~r~iL~~isf~--i~~g~tvAiVg~SG~gKsTI~rllfRFyD~--~sG~I~id~qdir~vtq~slR~a 338 (497)
T COG5265 263 VAFINVSFAYDPRRPILNGISFT--IPLGKTVAIVGESGAGKSTILRLLFRFYDV--NSGSITIDGQDIRDVTQQSLRRA 338 (497)
T ss_pred EEEEEEEeeccccchhhcCcccc--ccCccEEEEEeCCCCcHHHHHHHHHHHhCC--cCceEEEcchhHHHhHHHHHHHH
Confidence 34667778888777888888888 999999999999999999999999999995 45555555554 4578
Q ss_pred cceeeecCcccccchHH
Q psy5893 480 IRDCFVTGKWKASEDAS 496 (1182)
Q Consensus 480 Ir~VFQTGkw~~~~~~~ 496 (1182)
|+.+.|+.-++.+-.+-
T Consensus 339 Ig~VPQDtvLFNDti~y 355 (497)
T COG5265 339 IGIVPQDTVLFNDTIAY 355 (497)
T ss_pred hCcCcccceehhhhHHH
Confidence 99999998887554443
No 369
>PLN03140 ABC transporter G family member; Provisional
Probab=97.80 E-value=1.1e-05 Score=108.59 Aligned_cols=66 Identities=17% Similarity=0.096 Sum_probs=51.1
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc-----ccccceeeecCcc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII-----KDSIRDCFVTGKW 489 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL-----rdsIr~VFQTGkw 489 (1182)
..+..+++. +++|++++|+|||||||||||++|+|+.++.+.+|.+.+++... +..+++++|....
T Consensus 894 ~iL~~vs~~--i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~ 964 (1470)
T PLN03140 894 QLLREVTGA--FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIH 964 (1470)
T ss_pred eEeeCcEEE--EECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEcccccc
Confidence 456666666 99999999999999999999999999976433467777766433 3457888887544
No 370
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.79 E-value=2.2e-05 Score=82.08 Aligned_cols=43 Identities=28% Similarity=0.328 Sum_probs=36.7
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLS 466 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~S 466 (1182)
..+..++++ ++.||.+++-||||+|||||||+|.|.|.|+.|.
T Consensus 25 pV~~~vsls--V~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~ 67 (235)
T COG4778 25 PVLRNVSLS--VNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQ 67 (235)
T ss_pred eeeeceeEE--ecCccEEEeeCCCCCcHHHHHHHHHhccCCCCce
Confidence 344555555 9999999999999999999999999999976665
No 371
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=97.77 E-value=1.3e-05 Score=108.01 Aligned_cols=66 Identities=20% Similarity=0.133 Sum_probs=51.3
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCC-CCcccccCccccc----ccccceeeecCc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKT-PLSVIKGPVTLII----KDSIRDCFVTGK 488 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~-~~SGii~wdgeEL----rdsIr~VFQTGk 488 (1182)
+..+..+++. +++|++++|+|||||||||||++|+|+.++. +.+|.+.+++..+ +..+++++|.-.
T Consensus 776 ~~iL~~vs~~--i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~ 846 (1394)
T TIGR00956 776 RVILNNVDGW--VKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDL 846 (1394)
T ss_pred cEeeeCCEEE--EECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeeccccc
Confidence 3566777777 9999999999999999999999999998631 3347777776543 456788888743
No 372
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=97.76 E-value=2.5e-05 Score=106.30 Aligned_cols=69 Identities=20% Similarity=0.185 Sum_probs=52.6
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccccccccceeeecCcccccchHHHhh
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIKDSIRDCFVTGKWKASEDASELL 499 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeELrdsIr~VFQTGkw~~~~~~~~ll 499 (1182)
..+.+++++ +++|++++|+|||||||||||++|+|++++ .+|.+.+++ .|++++|+.......-.++++
T Consensus 652 ~~l~~isl~--i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~--~~G~i~~~g-----~i~yv~Q~~~l~~~Ti~eNI~ 720 (1522)
T TIGR00957 652 PTLNGITFS--IPEGALVAVVGQVGCGKSSLLSALLAEMDK--VEGHVHMKG-----SVAYVPQQAWIQNDSLRENIL 720 (1522)
T ss_pred ceeeeeEEE--EcCCCEEEEECCCCCCHHHHHHHHhCCCcc--CCcEEEECC-----EEEEEcCCccccCCcHHHHhh
Confidence 456677777 999999999999999999999999999994 455565543 689999986544433334443
No 373
>PLN03232 ABC transporter C family member; Provisional
Probab=97.76 E-value=2.7e-05 Score=105.84 Aligned_cols=71 Identities=17% Similarity=0.238 Sum_probs=56.3
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccccccccceeeecCcccccchHHHhhh
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIKDSIRDCFVTGKWKASEDASELLR 500 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeELrdsIr~VFQTGkw~~~~~~~~ll~ 500 (1182)
..+.+++++ +++|+.++|+|||||||||||++|+|++++..| .+ ..++..|++|.|+..++.+.-.++++-
T Consensus 631 ~vL~~inl~--i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G--~i----~~~~~~Iayv~Q~p~Lf~gTIreNI~f 701 (1495)
T PLN03232 631 PTLSDINLE--IPVGSLVAIVGGTGEGKTSLISAMLGELSHAET--SS----VVIRGSVAYVPQVSWIFNATVRENILF 701 (1495)
T ss_pred ceeeeeEEE--EcCCCEEEEECCCCCcHHHHHHHHhCCCcccCC--CE----EEecCcEEEEcCccccccccHHHHhhc
Confidence 456677777 999999999999999999999999999995443 22 245678999999987776655666653
No 374
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=97.72 E-value=1.8e-05 Score=106.61 Aligned_cols=68 Identities=16% Similarity=0.115 Sum_probs=51.7
Q ss_pred ccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCC--CCCcccccCccccc-------ccccceeeecCcc
Q psy5893 420 KKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTK--TPLSVIKGPVTLII-------KDSIRDCFVTGKW 489 (1182)
Q Consensus 420 ~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~--~~~SGii~wdgeEL-------rdsIr~VFQTGkw 489 (1182)
.+..+..+++. +++|++++|+|||||||||||++|+|+... .+.+|.+.+++..+ +..+++++|....
T Consensus 73 ~~~iL~~vs~~--i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~ 149 (1394)
T TIGR00956 73 TFDILKPMDGL--IKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVH 149 (1394)
T ss_pred cceeeeCCEEE--EECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEecccccc
Confidence 34566777777 999999999999999999999999999742 23567777776543 2347888887533
No 375
>PLN03130 ABC transporter C family member; Provisional
Probab=97.71 E-value=3.3e-05 Score=105.47 Aligned_cols=71 Identities=15% Similarity=0.178 Sum_probs=56.0
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccccccccceeeecCcccccchHHHhhh
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIKDSIRDCFVTGKWKASEDASELLR 500 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeELrdsIr~VFQTGkw~~~~~~~~ll~ 500 (1182)
..+..++++ +++|+.++|+|||||||||||++|+|++++..| |.+. ++..|++|.|+...+.+.-.++++-
T Consensus 631 ~vL~~inl~--i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G-G~I~-----l~~~Iayv~Q~p~LfngTIreNI~f 701 (1622)
T PLN03130 631 PTLSNINLD--VPVGSLVAIVGSTGEGKTSLISAMLGELPPRSD-ASVV-----IRGTVAYVPQVSWIFNATVRDNILF 701 (1622)
T ss_pred ceeeceeEE--ecCCCEEEEECCCCCCHHHHHHHHHHhhccCCC-ceEE-----EcCeEEEEcCccccCCCCHHHHHhC
Confidence 456666766 999999999999999999999999999995441 4443 4678999999987776655566553
No 376
>PLN03073 ABC transporter F family; Provisional
Probab=97.70 E-value=2.2e-05 Score=99.33 Aligned_cols=37 Identities=19% Similarity=0.184 Sum_probs=33.1
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
..+..++++ +.+|+++||||||||||||||++|+|+.
T Consensus 191 ~ll~~isl~--i~~Ge~~gLvG~NGsGKSTLLr~l~g~~ 227 (718)
T PLN03073 191 DLIVDASVT--LAFGRHYGLVGRNGTGKTTFLRYMAMHA 227 (718)
T ss_pred EEEECCEEE--ECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 466777777 9999999999999999999999999974
No 377
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=97.70 E-value=2.4e-05 Score=90.66 Aligned_cols=60 Identities=20% Similarity=0.101 Sum_probs=48.5
Q ss_pred cccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc-----------ccccceeeecC
Q psy5893 423 HVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII-----------KDSIRDCFVTG 487 (1182)
Q Consensus 423 ~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL-----------rdsIr~VFQTG 487 (1182)
+++.++++ +++|+.++|||.||||||||=++|.+|+++ .|.+.+.++++ +..+..+||+.
T Consensus 302 AVd~isl~--L~~gqTlGlVGESGSGKsTlG~allrL~~s---~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDP 372 (534)
T COG4172 302 AVDGISLT--LRRGQTLGLVGESGSGKSTLGLALLRLIPS---QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDP 372 (534)
T ss_pred EeccceeE--ecCCCeEEEEecCCCCcchHHHHHHhhcCc---CceEEECCccccccChhhhhhhhhhceEEEeCC
Confidence 45555555 999999999999999999999999999983 36666655533 46789999994
No 378
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=97.67 E-value=2.2e-05 Score=90.56 Aligned_cols=49 Identities=22% Similarity=0.076 Sum_probs=38.1
Q ss_pred EEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc------ccccceeeecCcccc
Q psy5893 441 VVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII------KDSIRDCFVTGKWKA 491 (1182)
Q Consensus 441 IvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL------rdsIr~VFQTGkw~~ 491 (1182)
|+|||||||||||++|+|+++| .+|.+.+++..+ ...++++||...++.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p--~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~ 55 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQP--DSGSIMLDGEDVTNVPPHLRHINMVFQSYALFP 55 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCC--CceEEEECCEECCCCCHHHCCEEEEecCccccC
Confidence 6899999999999999999994 456666665543 346889999875543
No 379
>PTZ00243 ABC transporter; Provisional
Probab=97.64 E-value=3.8e-05 Score=104.55 Aligned_cols=61 Identities=21% Similarity=0.159 Sum_probs=49.0
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccccccccceeeecCcccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIKDSIRDCFVTGKWKA 491 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeELrdsIr~VFQTGkw~~ 491 (1182)
..+.+++++ +++|++++|+|||||||||||++|+|++++ .+|.+.+ ...|++++|+.....
T Consensus 674 ~iL~~isl~--i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~--~~G~i~~-----~~~i~yv~Q~~~l~~ 734 (1560)
T PTZ00243 674 VLLRDVSVS--VPRGKLTVVLGATGSGKSTLLQSLLSQFEI--SEGRVWA-----ERSIAYVPQQAWIMN 734 (1560)
T ss_pred eeEeeeEEE--ECCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEE-----CCeEEEEeCCCccCC
Confidence 456677777 999999999999999999999999999995 4455543 357999999865443
No 380
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.63 E-value=3.7e-05 Score=93.94 Aligned_cols=58 Identities=22% Similarity=0.117 Sum_probs=42.8
Q ss_pred cccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccccccccceeeecC
Q psy5893 423 HVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIKDSIRDCFVTG 487 (1182)
Q Consensus 423 ~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeELrdsIr~VFQTG 487 (1182)
.+..+++. +.+|+.+|||||||+||||||++|+|...+ .+|.+.|... -.|++.-|.-
T Consensus 337 l~~~~s~~--i~~g~riaiiG~NG~GKSTLlk~l~g~~~~--~~G~v~~g~~---v~igyf~Q~~ 394 (530)
T COG0488 337 LLKDLSFR--IDRGDRIAIVGPNGAGKSTLLKLLAGELGP--LSGTVKVGET---VKIGYFDQHR 394 (530)
T ss_pred eecCceEE--ecCCCEEEEECCCCCCHHHHHHHHhhhccc--CCceEEeCCc---eEEEEEEehh
Confidence 34455555 999999999999999999999999999884 3666655433 3455555553
No 381
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.60 E-value=4.4e-05 Score=83.56 Aligned_cols=31 Identities=32% Similarity=0.492 Sum_probs=27.6
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHH
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLI 453 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLL 453 (1182)
.+++..++++ +++|++++|+||||||||||+
T Consensus 8 ~~~l~~vsl~--i~~Ge~~~l~G~sGsGKSTL~ 38 (226)
T cd03270 8 EHNLKNVDVD--IPRNKLVVITGVSGSGKSSLA 38 (226)
T ss_pred hhccccceee--cCCCcEEEEEcCCCCCHHHHH
Confidence 4567777777 999999999999999999996
No 382
>KOG0061|consensus
Probab=97.59 E-value=3.6e-05 Score=95.92 Aligned_cols=68 Identities=21% Similarity=0.151 Sum_probs=54.1
Q ss_pred ccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCC-CCcccccCccc-----ccccccceeeecCcc
Q psy5893 420 KKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKT-PLSVIKGPVTL-----IIKDSIRDCFVTGKW 489 (1182)
Q Consensus 420 ~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~-~~SGii~wdge-----ELrdsIr~VFQTGkw 489 (1182)
.++.++.++.. ..||+++||+|||||||||||++|+|..... ..+|.+..+++ .+....+++-|+.-.
T Consensus 42 ~k~iL~~vsg~--~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l 115 (613)
T KOG0061|consen 42 TKTILKGVSGT--AKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVL 115 (613)
T ss_pred cceeeeCcEEE--EecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccc
Confidence 35667777777 9999999999999999999999999999852 45688888873 345667777777543
No 383
>KOG0059|consensus
Probab=97.38 E-value=0.0001 Score=95.44 Aligned_cols=62 Identities=16% Similarity=0.143 Sum_probs=49.3
Q ss_pred cccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccc---------ccccccceeeecCc
Q psy5893 423 HVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTL---------IIKDSIRDCFVTGK 488 (1182)
Q Consensus 423 ~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdge---------ELrdsIr~VFQTGk 488 (1182)
++..+++. +++|+++|++|||||||||+++||+|...|+.|. ..+.+. .....|++|.|.-.
T Consensus 580 Av~~ls~~--V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~--a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~ 650 (885)
T KOG0059|consen 580 AVRGLSFA--VPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGE--ALIKGHDITVSTDFQQVRKQLGYCPQFDA 650 (885)
T ss_pred hhcceEEE--ecCCceEEEecCCCCCchhhHHHHhCCccCCcce--EEEecCccccccchhhhhhhcccCCchhh
Confidence 66666777 9999999999999999999999999999966554 322222 35677999999843
No 384
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=97.36 E-value=0.00015 Score=78.44 Aligned_cols=62 Identities=21% Similarity=0.153 Sum_probs=38.7
Q ss_pred cccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccC-CCCCCcccc-----cCcccccccccceeeecC
Q psy5893 425 PQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNF-TKTPLSVIK-----GPVTLIIKDSIRDCFVTG 487 (1182)
Q Consensus 425 ~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~-~~~~~SGii-----~wdgeELrdsIr~VFQTG 487 (1182)
..+++.. ..+|++++|+|||||||||||++|++.+ -+....... .+........+...||..
T Consensus 18 ~~i~~~~-~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~ 85 (213)
T cd03279 18 QVIDFTG-LDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLG 85 (213)
T ss_pred eEEeCCC-CCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEEC
Confidence 3445552 2358999999999999999999999644 221222221 122233445677777775
No 385
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.35 E-value=0.00014 Score=77.23 Aligned_cols=30 Identities=20% Similarity=0.279 Sum_probs=28.4
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccCCC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNFTK 462 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~ 462 (1182)
+..|.+++|+||||||||||+++|+|++++
T Consensus 22 v~~g~~i~I~G~tGSGKTTll~aL~~~i~~ 51 (186)
T cd01130 22 VEARKNILISGGTGSGKTTLLNALLAFIPP 51 (186)
T ss_pred HhCCCEEEEECCCCCCHHHHHHHHHhhcCC
Confidence 678999999999999999999999999984
No 386
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=97.33 E-value=0.00011 Score=80.45 Aligned_cols=64 Identities=64% Similarity=1.084 Sum_probs=54.2
Q ss_pred ceeehhhhhcceeceeeeecccccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 398 AFTFQSVIKGERKFRRKEDIQAKKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 398 a~~~~~~~k~~~~~~~~~~~~~~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
||+|.+++..+|..+..+..+.++.++..........+|.+++|+|++|+|||||+++|.+.+.
T Consensus 1 ~~~~~~~~~~~r~~~~~~~~~~k~~~~~~~~r~~~~~~~~~i~ivG~~~~GKstl~~~l~~~~~ 64 (225)
T cd01882 1 AFAFSSAVAAARQFQRTADIEEKKLHVPVVDRTPEEPPPLVVAVVGPPGVGKTTLIKSLVKNYT 64 (225)
T ss_pred CcccccchHHHHHHHHHHHhhhccccceeeccccccCCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 4677777777777777777777888888888877889999999999999999999999998754
No 387
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.33 E-value=0.00012 Score=78.74 Aligned_cols=28 Identities=25% Similarity=0.488 Sum_probs=26.6
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 434 PPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 434 ~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
++|.+++|+||||||||||+++|++++.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 6799999999999999999999999987
No 388
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.31 E-value=0.00017 Score=76.47 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=24.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 436 PIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 436 GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
|++++|+||||||||||+++|+++..
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 78999999999999999999999876
No 389
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=97.26 E-value=0.0002 Score=83.29 Aligned_cols=64 Identities=16% Similarity=0.003 Sum_probs=51.4
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCC---CcccccCcccccc------------cccceeeec
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTP---LSVIKGPVTLIIK------------DSIRDCFVT 486 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~---~SGii~wdgeELr------------dsIr~VFQT 486 (1182)
.++..+++. +.+||++||||.||||||-..+.|+||++..+ .+|.+.+.++++. ..|+++||.
T Consensus 24 ~aVk~isf~--i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQE 101 (534)
T COG4172 24 EAVKGISFD--IEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQE 101 (534)
T ss_pred Eeeccceee--ecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecc
Confidence 456666666 99999999999999999999999999998422 2367777777653 479999998
Q ss_pred C
Q psy5893 487 G 487 (1182)
Q Consensus 487 G 487 (1182)
.
T Consensus 102 P 102 (534)
T COG4172 102 P 102 (534)
T ss_pred c
Confidence 5
No 390
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.25 E-value=0.00016 Score=77.89 Aligned_cols=29 Identities=24% Similarity=0.263 Sum_probs=25.6
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
+..|++++|+|||||||||||++|+|...
T Consensus 22 l~~g~~~~ltGpNg~GKSTllr~i~~~~~ 50 (199)
T cd03283 22 MEKKNGILITGSNMSGKSTFLRTIGVNVI 50 (199)
T ss_pred EcCCcEEEEECCCCCChHHHHHHHHHHHH
Confidence 34589999999999999999999998663
No 391
>KOG1832|consensus
Probab=97.25 E-value=0.00019 Score=88.47 Aligned_cols=11 Identities=18% Similarity=0.374 Sum_probs=5.4
Q ss_pred eeccccCCCcc
Q psy5893 96 NICQVHGESTE 106 (1182)
Q Consensus 96 ni~qv~Gds~~ 106 (1182)
.+|....+..+
T Consensus 1364 Dlct~~~D~~l 1374 (1516)
T KOG1832|consen 1364 DLCTEPTDSFL 1374 (1516)
T ss_pred hhhcCCccceE
Confidence 44444555554
No 392
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.25 E-value=0.0003 Score=86.39 Aligned_cols=62 Identities=13% Similarity=0.009 Sum_probs=45.5
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccccccccceeeecCccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIKDSIRDCFVTGKWK 490 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeELrdsIr~VFQTGkw~ 490 (1182)
.-++..++. +++|+-+.|.||||||||||+|+|+||.| -++|.+..... ..+-++.|....-
T Consensus 407 ~ll~~l~~~--v~~G~~llI~G~SG~GKTsLlRaiaGLWP--~g~G~I~~P~~---~~~lflpQ~PY~p 468 (604)
T COG4178 407 TLLSELNFE--VRPGERLLITGESGAGKTSLLRALAGLWP--WGSGRISMPAD---SALLFLPQRPYLP 468 (604)
T ss_pred eeeccceee--eCCCCEEEEECCCCCCHHHHHHHHhccCc--cCCCceecCCC---CceEEecCCCCCC
Confidence 345555666 99999999999999999999999999999 56666655522 2244455555443
No 393
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.24 E-value=0.00022 Score=76.14 Aligned_cols=28 Identities=29% Similarity=0.567 Sum_probs=26.5
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 434 PPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 434 ~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
++|++++|+||||||||||+++|+++++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999875
No 394
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.22 E-value=0.00023 Score=75.28 Aligned_cols=28 Identities=18% Similarity=0.150 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHccCCC
Q psy5893 435 PPIVVAVVGPPQVGKSTLIRCLIKNFTK 462 (1182)
Q Consensus 435 ~GeivaIvGpsGsGKSTLLrlL~Gl~~~ 462 (1182)
+|++++|+||||||||||+++|++++.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~ 29 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA 29 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 5899999999999999999999999873
No 395
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=97.22 E-value=0.00017 Score=79.10 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 436 PIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 436 GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
|++++|+|||||||||||++|++++.
T Consensus 23 ~~~~~i~GpNGsGKStll~ai~~~l~ 48 (243)
T cd03272 23 PKHNVVVGRNGSGKSNFFAAIRFVLS 48 (243)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 78999999999999999999996653
No 396
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=97.18 E-value=0.00035 Score=75.53 Aligned_cols=52 Identities=19% Similarity=0.250 Sum_probs=36.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHH----ccCCCCCCcc---cccCcccccccccceeeecC
Q psy5893 435 PPIVVAVVGPPQVGKSTLIRCLI----KNFTKTPLSV---IKGPVTLIIKDSIRDCFVTG 487 (1182)
Q Consensus 435 ~GeivaIvGpsGsGKSTLLrlL~----Gl~~~~~~SG---ii~wdgeELrdsIr~VFQTG 487 (1182)
+| +++|+|||||||||||.+|. |..++..+.. ...+........+..+|+..
T Consensus 22 ~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~ 80 (204)
T cd03240 22 SP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENA 80 (204)
T ss_pred CC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeC
Confidence 45 99999999999999999995 7777433311 11122234456788888875
No 397
>KOG0054|consensus
Probab=97.14 E-value=0.0003 Score=93.15 Aligned_cols=83 Identities=13% Similarity=-0.056 Sum_probs=61.9
Q ss_pred eceeeeecccc-cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcc--------ccccccc
Q psy5893 410 KFRRKEDIQAK-KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVT--------LIIKDSI 480 (1182)
Q Consensus 410 ~~~~~~~~~~~-k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdg--------eELrdsI 480 (1182)
+-.+.-.|... ..++..+++. |+|||.|||||.+|||||||+.+|.++..+ .+|.+.+++ ++++.+|
T Consensus 1141 f~~~~~RYrp~lp~VLk~is~~--I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~--~~G~I~IDgvdI~~igL~dLRsrl 1216 (1381)
T KOG0054|consen 1141 FEDLSLRYRPNLPLVLKGISFT--IKPGEKVGIVGRTGAGKSSLILALFRLVEP--AEGEILIDGVDISKIGLHDLRSRL 1216 (1381)
T ss_pred EEEeEEEeCCCCcchhcCceEE--EcCCceEEEeCCCCCCHHHHHHHHHHhcCc--cCCeEEEcCeecccccHHHHHhcC
Confidence 44444454443 3456666666 999999999999999999999999999995 455555544 4567899
Q ss_pred ceeeecCcccccchHH
Q psy5893 481 RDCFVTGKWKASEDAS 496 (1182)
Q Consensus 481 r~VFQTGkw~~~~~~~ 496 (1182)
+.+.|+.-++++.-..
T Consensus 1217 sIIPQdPvLFsGTvR~ 1232 (1381)
T KOG0054|consen 1217 SIIPQDPVLFSGTVRF 1232 (1381)
T ss_pred eeeCCCCceecCcccc
Confidence 9999998888654333
No 398
>KOG0927|consensus
Probab=97.09 E-value=0.00036 Score=83.66 Aligned_cols=43 Identities=23% Similarity=0.272 Sum_probs=34.6
Q ss_pred cccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccC
Q psy5893 425 PQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGP 471 (1182)
Q Consensus 425 ~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~w 471 (1182)
..+++. +..++.+++||||||||||||++++|.+.| ..|.+..
T Consensus 407 ~~l~fg--id~~srvAlVGPNG~GKsTLlKl~~gdl~p--~~G~vs~ 449 (614)
T KOG0927|consen 407 KKLNFG--IDLDSRVALVGPNGAGKSTLLKLITGDLQP--TIGMVSR 449 (614)
T ss_pred hhhhcc--cCcccceeEecCCCCchhhhHHHHhhcccc--ccccccc
Confidence 334444 889999999999999999999999999994 4555443
No 399
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.07 E-value=0.00038 Score=74.72 Aligned_cols=30 Identities=20% Similarity=0.199 Sum_probs=25.7
Q ss_pred CCCCCCCCCc-EEEEEcCCCCCHHHHHHHHH
Q psy5893 428 DRTPLEPPPI-VVAVVGPPQVGKSTLIRCLI 457 (1182)
Q Consensus 428 d~~~~i~~Ge-ivaIvGpsGsGKSTLLrlL~ 457 (1182)
..+..+.+|+ +++|+|||||||||||++|+
T Consensus 19 ~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 19 PLDIQLGENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred cceEEECCCceEEEEECCCCCChHHHHHHHH
Confidence 3444488885 89999999999999999999
No 400
>KOG0066|consensus
Probab=97.06 E-value=0.00052 Score=80.03 Aligned_cols=54 Identities=26% Similarity=0.253 Sum_probs=42.4
Q ss_pred eceeeeecccccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCC
Q psy5893 410 KFRRKEDIQAKKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPL 465 (1182)
Q Consensus 410 ~~~~~~~~~~~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~ 465 (1182)
+-.+++.+...+.....+||- |.-...++||||||+||||||++|.|-+.|..|
T Consensus 589 lH~VtFgy~gqkpLFkkldFG--iDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~G 642 (807)
T KOG0066|consen 589 LHDVTFGYPGQKPLFKKLDFG--IDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDG 642 (807)
T ss_pred cccccccCCCCCchhhccccc--ccccceeEEECCCCccHHHHHHHHhcCCCCCcc
Confidence 445666666666666666776 666788999999999999999999999995444
No 401
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.04 E-value=0.00037 Score=74.80 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=25.2
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
+.+|++++|+|||||||||||++|++..
T Consensus 26 l~~~~~~~l~G~Ng~GKStll~~i~~~~ 53 (202)
T cd03243 26 LGSGRLLLITGPNMGGKSTYLRSIGLAV 53 (202)
T ss_pred EcCCeEEEEECCCCCccHHHHHHHHHHH
Confidence 5678999999999999999999999543
No 402
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=97.04 E-value=0.00046 Score=75.09 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcc
Q psy5893 437 IVVAVVGPPQVGKSTLIRCLIKN 459 (1182)
Q Consensus 437 eivaIvGpsGsGKSTLLrlL~Gl 459 (1182)
++++|+|||||||||||++|..+
T Consensus 26 ~i~~ivGpNGaGKSTll~~i~~~ 48 (212)
T cd03274 26 SFSAIVGPNGSGKSNVIDSMLFV 48 (212)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 79999999999999999999843
No 403
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=97.04 E-value=0.00042 Score=76.88 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=25.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHccCCC
Q psy5893 436 PIVVAVVGPPQVGKSTLIRCLIKNFTK 462 (1182)
Q Consensus 436 GeivaIvGpsGsGKSTLLrlL~Gl~~~ 462 (1182)
+.+++|||||||||||||++|++++.+
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~ 51 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGI 51 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcc
Confidence 679999999999999999999999874
No 404
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.00 E-value=0.00053 Score=71.65 Aligned_cols=26 Identities=35% Similarity=0.700 Sum_probs=24.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 436 PIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 436 GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
|.+++|+||||||||||+++|++.++
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCc
Confidence 78999999999999999999999875
No 405
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=96.98 E-value=0.00036 Score=81.30 Aligned_cols=37 Identities=32% Similarity=0.435 Sum_probs=33.0
Q ss_pred cccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 423 HVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 423 ~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
.+.++++. +++|++++|+|+|||||||||+||+|...
T Consensus 398 vlr~vNL~--ikpGdvvaVvGqSGaGKttllRmi~G~~~ 434 (593)
T COG2401 398 VLRNLNLE--IKPGDVVAVVGQSGAGKTTLLRMILGAQK 434 (593)
T ss_pred eeeceeeE--ecCCCeEEEEecCCCCcchHHHHHHHHhh
Confidence 45667777 99999999999999999999999999764
No 406
>KOG0064|consensus
Probab=96.92 E-value=0.00059 Score=81.48 Aligned_cols=41 Identities=27% Similarity=0.331 Sum_probs=34.4
Q ss_pred ccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCc
Q psy5893 424 VPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLS 466 (1182)
Q Consensus 424 i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~S 466 (1182)
++.+++. +.+|-.+-|+||||||||+|+|+|+||.|...|.
T Consensus 498 v~~Ltf~--i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~ 538 (728)
T KOG0064|consen 498 VPKLTFQ--IEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGL 538 (728)
T ss_pred ecceeEE--ecCCceEEEECCCCccHHHHHHHHhccCcccCCe
Confidence 4444444 9999999999999999999999999999965443
No 407
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.92 E-value=0.00062 Score=71.25 Aligned_cols=26 Identities=31% Similarity=0.474 Sum_probs=24.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 436 PIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 436 GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
|.+++|+||||||||||+++|++++.
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 57899999999999999999999876
No 408
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.91 E-value=0.00086 Score=59.58 Aligned_cols=27 Identities=30% Similarity=0.380 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 435 PPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 435 ~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
.|.++.|+|||||||||||.+|.-++.
T Consensus 22 ~g~~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 22 RGDVTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence 467999999999999999999988776
No 409
>KOG0054|consensus
Probab=96.90 E-value=0.00068 Score=89.85 Aligned_cols=92 Identities=23% Similarity=0.195 Sum_probs=66.1
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccccccccceeeecCcccccchHHHhhhc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIKDSIRDCFVTGKWKASEDASELLRL 501 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeELrdsIr~VFQTGkw~~~~~~~~ll~~ 501 (1182)
..+.++++. +++|+.+|||||.|||||+||.+|.|-++ ..+|.+.+++ .+++|.|..+...+.-.+++|-.
T Consensus 535 ~tL~dIn~~--i~~G~lvaVvG~vGsGKSSLL~AiLGEm~--~~sG~v~v~g-----siaYv~Q~pWI~ngTvreNILFG 605 (1381)
T KOG0054|consen 535 PTLKDINFE--IKKGQLVAVVGPVGSGKSSLLSAILGEMP--KLSGSVAVNG-----SVAYVPQQPWIQNGTVRENILFG 605 (1381)
T ss_pred ccccceeEE--ecCCCEEEEECCCCCCHHHHHHHHhcCcc--cccceEEEcC-----eEEEeccccHhhCCcHHHhhhcC
Confidence 367777766 99999999999999999999999999999 4556554444 48999999866666555666655
Q ss_pred CCCCC---c-----ccccCCccccccCcc
Q psy5893 502 DDMDD---D-----EELFGDFEDLETGEK 522 (1182)
Q Consensus 502 ~~~~~---d-----~e~~gdfedle~~~~ 522 (1182)
..++. + =-+.-|+|=|..|+.
T Consensus 606 ~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~ 634 (1381)
T KOG0054|consen 606 SPYDEERYDKVIKACALKKDLEILPFGDL 634 (1381)
T ss_pred ccccHHHHHHHHHHccCHhHHhhcCCCCc
Confidence 44321 0 023346776766654
No 410
>KOG0065|consensus
Probab=96.89 E-value=0.00048 Score=89.76 Aligned_cols=64 Identities=16% Similarity=0.075 Sum_probs=49.2
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccc-----cccccceeeec
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLI-----IKDSIRDCFVT 486 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeE-----LrdsIr~VFQT 486 (1182)
++.+..|+-- ++||.++||+|+|||||||||++|+|-....-.+|.+.+++.. ..+.+++|=|+
T Consensus 804 ~qLL~~V~G~--~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~ 872 (1391)
T KOG0065|consen 804 RQLLNNVSGA--FKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQ 872 (1391)
T ss_pred eEhhhcCceE--ecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecc
Confidence 3445555555 8999999999999999999999999998744445777776653 34678888666
No 411
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.89 E-value=0.00066 Score=74.44 Aligned_cols=32 Identities=31% Similarity=0.447 Sum_probs=28.1
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHccCCCCCC
Q psy5893 434 PPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPL 465 (1182)
Q Consensus 434 ~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~ 465 (1182)
.+..+++|+||||||||||+++|++++.+..+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g 62 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGE 62 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccC
Confidence 45789999999999999999999999985433
No 412
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=96.86 E-value=0.0012 Score=84.78 Aligned_cols=16 Identities=31% Similarity=0.447 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHhh
Q psy5893 336 SDLAQKAASAFLERQA 351 (1182)
Q Consensus 336 ~~la~ka~eay~~rq~ 351 (1182)
..|-+.+.+.|.+|+.
T Consensus 735 ~~lD~~La~~Fk~r~~ 750 (784)
T PF04931_consen 735 MALDEQLAAIFKERKE 750 (784)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3445666677777644
No 413
>KOG2355|consensus
Probab=96.77 E-value=0.0013 Score=70.83 Aligned_cols=63 Identities=19% Similarity=0.199 Sum_probs=44.5
Q ss_pred cCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCccccc------CcccccccccceeeecCcccc
Q psy5893 427 VDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKG------PVTLIIKDSIRDCFVTGKWKA 491 (1182)
Q Consensus 427 vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~------wdgeELrdsIr~VFQTGkw~~ 491 (1182)
+|+...++.|.-..+||.|||||||||++|+|-.-..+ +.+. +.+..+..+-..++.-|.|..
T Consensus 31 ~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~--~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~ 99 (291)
T KOG2355|consen 31 FDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGG--GVVQVLGRSAFHDTSLESSGDLSYLGGEWSK 99 (291)
T ss_pred EEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccC--CeEEEcCcCccccccccccCceeEecccccc
Confidence 46666699999999999999999999999999765322 3333 333333344445666677753
No 414
>KOG0927|consensus
Probab=96.76 E-value=0.0012 Score=79.28 Aligned_cols=49 Identities=20% Similarity=0.078 Sum_probs=39.7
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCccccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKG 470 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~ 470 (1182)
......|.++.+.+|+-+||+|||||||||+|++|+|-..|.|..-.+.
T Consensus 87 g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y 135 (614)
T KOG0927|consen 87 GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFY 135 (614)
T ss_pred CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchh
Confidence 3444556677799999999999999999999999999999766553333
No 415
>KOG0060|consensus
Probab=96.74 E-value=0.0015 Score=79.11 Aligned_cols=50 Identities=20% Similarity=0.204 Sum_probs=38.4
Q ss_pred cccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCc
Q psy5893 423 HVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPV 472 (1182)
Q Consensus 423 ~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wd 472 (1182)
.+-.-++++.|+.|+.+-|.||||||||+|||+|+||.+...|.-...+.
T Consensus 448 ~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~ 497 (659)
T KOG0060|consen 448 DLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTD 497 (659)
T ss_pred ceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEeccc
Confidence 34344566669999999999999999999999999999944443333333
No 416
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.66 E-value=0.00097 Score=71.10 Aligned_cols=24 Identities=21% Similarity=0.488 Sum_probs=22.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
+++|+||||||||||+++|++++.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~ 24 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG 24 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999983
No 417
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=96.63 E-value=0.0014 Score=77.51 Aligned_cols=34 Identities=24% Similarity=0.338 Sum_probs=30.8
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCc
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLS 466 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~S 466 (1182)
+..||+++|+||||-|||||+++|+|.+.|+.++
T Consensus 364 i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~ 397 (591)
T COG1245 364 IYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS 397 (591)
T ss_pred eecceEEEEECCCCcchHHHHHHHhccccCCCCC
Confidence 6788999999999999999999999999976654
No 418
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.63 E-value=0.0013 Score=70.74 Aligned_cols=28 Identities=21% Similarity=0.511 Sum_probs=25.6
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 434 PPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 434 ~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
..+.+++|+|+||||||||+++|++.+.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~ 31 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG 31 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4678999999999999999999999873
No 419
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=96.61 E-value=0.0012 Score=78.99 Aligned_cols=45 Identities=16% Similarity=0.152 Sum_probs=36.9
Q ss_pred eecccccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCC
Q psy5893 415 EDIQAKKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTK 462 (1182)
Q Consensus 415 ~~~~~~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~ 462 (1182)
....++..+++.+ ++ +.+|++++|+|+||||||||+++|+|+..+
T Consensus 137 ~~l~TGi~aID~l-l~--I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~ 181 (434)
T PRK07196 137 TPLDVGVNAINGL-LT--IGKGQRVGLMAGSGVGKSVLLGMITRYTQA 181 (434)
T ss_pred cccccceeeccce-Ee--EecceEEEEECCCCCCccHHHHHHhcccCC
Confidence 3444555566666 55 999999999999999999999999998873
No 420
>COG5177 Uncharacterized conserved protein [Function unknown]
Probab=96.60 E-value=0.0014 Score=77.13 Aligned_cols=82 Identities=22% Similarity=0.293 Sum_probs=74.4
Q ss_pred ceeeeeeeehhhhccccccCCceEeeccceeeeeccccccc--chhhhhhccccCCCcceeeeEeeccccCCCceEEEEE
Q psy5893 1093 FSFQARVKKHRWYGKILKSGNPVIMSVGWRRFQTLPIYSKQ--EDNMRYRMLKYTPQHVACMAHFWGPITRSGTGFLAVQ 1170 (1182)
Q Consensus 1093 ~~~~~r~k~h~w~~~~lks~~p~i~s~g~rr~~~~p~~~~~--~~~~r~r~~ky~p~~~~c~~~f~gp~~~~~t~~~~~~ 1170 (1182)
.+.|+-+++|..|.++|+|..||++-+|-|||-..|+||.- ..|+-+++-+|-|+-..-.|+|.|||+--..++|.|.
T Consensus 573 tV~nFs~~rh~eye~P~~s~E~~vvq~G~rr~~i~Pl~s~~s~s~Nn~qKy~r~l~p~~~~vas~I~Pi~Fg~spvi~fk 652 (769)
T COG5177 573 TVHNFSLQRHFEYEVPLKSEESMVVQLGHRRVDICPLISKGSNSPNNNQKYFRRLKPLESGVASFIGPISFGLSPVIIFK 652 (769)
T ss_pred hhhhhhhhhhhcccCCCCcccceeeeeccceEEEeehhccCCCCCcchHHHHhhcCccceeeeEEEcceeccCcceEEEc
Confidence 36788899999999999999999999999999999999973 3488899999999999999999999999999999997
Q ss_pred eccc
Q psy5893 1171 DVAK 1174 (1182)
Q Consensus 1171 ~~~~ 1174 (1182)
.-+-
T Consensus 653 kS~~ 656 (769)
T COG5177 653 KSAL 656 (769)
T ss_pred cCcc
Confidence 6543
No 421
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.59 E-value=0.0015 Score=73.90 Aligned_cols=38 Identities=26% Similarity=0.366 Sum_probs=30.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc
Q psy5893 437 IVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII 476 (1182)
Q Consensus 437 eivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL 476 (1182)
..++|+||||||||||+++|+|++. ++.|.+.+.+..+
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~--~~~G~i~~~g~~v 149 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS--TGISQLGLRGKKV 149 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC--CCCceEEECCEEe
Confidence 5789999999999999999999999 4556555555443
No 422
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.57 E-value=0.0014 Score=74.84 Aligned_cols=28 Identities=32% Similarity=0.487 Sum_probs=25.4
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 434 PPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 434 ~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
+...++||.||||||||||+++|.+++.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457999999999999999999999986
No 423
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.57 E-value=0.0015 Score=70.89 Aligned_cols=36 Identities=19% Similarity=0.166 Sum_probs=30.6
Q ss_pred cccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 423 HVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 423 ~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
...+++++ +..|++++|+||||+||||||++|+++.
T Consensus 18 v~~~~~~~--~~~~~~~~l~G~n~~GKstll~~i~~~~ 53 (204)
T cd03282 18 IPNDIYLT--RGSSRFHIITGPNMSGKSTYLKQIALLA 53 (204)
T ss_pred EEeeeEEe--eCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 44555665 7889999999999999999999999775
No 424
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=96.55 E-value=0.0019 Score=77.42 Aligned_cols=36 Identities=22% Similarity=0.156 Sum_probs=31.1
Q ss_pred cCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCC
Q psy5893 427 VDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTK 462 (1182)
Q Consensus 427 vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~ 462 (1182)
+|....+.+|+.++|+|||||||||||++|+++..+
T Consensus 156 ID~L~~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~p 191 (450)
T PRK06002 156 IDIFTPLCAGQRIGIFAGSGVGKSTLLAMLARADAF 191 (450)
T ss_pred eeeeceecCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 333335899999999999999999999999999874
No 425
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.55 E-value=0.0017 Score=73.13 Aligned_cols=34 Identities=26% Similarity=0.409 Sum_probs=29.7
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHH
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCL 456 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL 456 (1182)
.+.+..++.. ++.|.+++|.|+||||||||++.+
T Consensus 8 ~~nl~~v~~~--ip~g~~~~vtGvSGsGKStL~~~~ 41 (261)
T cd03271 8 ENNLKNIDVD--IPLGVLTCVTGVSGSGKSSLINDT 41 (261)
T ss_pred hhcCCCceee--ccCCcEEEEECCCCCchHHHHHHH
Confidence 3566777777 999999999999999999999966
No 426
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=96.49 E-value=0.002 Score=71.45 Aligned_cols=26 Identities=23% Similarity=0.418 Sum_probs=24.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHccCCC
Q psy5893 437 IVVAVVGPPQVGKSTLIRCLIKNFTK 462 (1182)
Q Consensus 437 eivaIvGpsGsGKSTLLrlL~Gl~~~ 462 (1182)
.+++|+|||||||||||.+|++++.+
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~ 48 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGE 48 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 49999999999999999999999864
No 427
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.48 E-value=0.0024 Score=61.14 Aligned_cols=27 Identities=44% Similarity=0.800 Sum_probs=24.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 435 PPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 435 ~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
.+..+.|+||+|+||||+++.|+..+.
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccC
Confidence 367899999999999999999999987
No 428
>PRK08149 ATP synthase SpaL; Validated
Probab=96.48 E-value=0.0023 Score=76.53 Aligned_cols=40 Identities=13% Similarity=0.136 Sum_probs=33.1
Q ss_pred ccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCC
Q psy5893 420 KKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTK 462 (1182)
Q Consensus 420 ~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~ 462 (1182)
+..+++.+ + .+..|++++|+|+||+||||||++|+++..+
T Consensus 138 Gi~aid~l-l--~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~ 177 (428)
T PRK08149 138 GVRAIDGL-L--TCGVGQRMGIFASAGCGKTSLMNMLIEHSEA 177 (428)
T ss_pred CcEEEeee-e--eEecCCEEEEECCCCCChhHHHHHHhcCCCC
Confidence 33445555 4 4899999999999999999999999998874
No 429
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.45 E-value=0.0014 Score=71.83 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=23.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHccCCC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNFTK 462 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~~~ 462 (1182)
++||.||||||||||+++|.+++..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 5899999999999999999999863
No 430
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.45 E-value=0.0018 Score=69.36 Aligned_cols=43 Identities=16% Similarity=0.012 Sum_probs=32.7
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccccc
Q psy5893 434 PPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIK 477 (1182)
Q Consensus 434 ~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeELr 477 (1182)
++|.+++|+|+||||||||+++|.+++.+ .+.+.+.+++..+.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~-~~~~~~~ld~d~~~ 64 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHE-LGVSTYLLDGDNVR 64 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh-CCCCEEEEcCEeHH
Confidence 57889999999999999999999998752 23344555554443
No 431
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=96.45 E-value=0.0024 Score=66.97 Aligned_cols=27 Identities=30% Similarity=0.431 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 435 PPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 435 ~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
.+.+++|+|+||+||||||+.|.+-..
T Consensus 34 ~~k~~vl~G~SGvGKSSLiN~L~~~~~ 60 (161)
T PF03193_consen 34 KGKTSVLLGQSGVGKSSLINALLPEAK 60 (161)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHTSS-
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 358999999999999999999998754
No 432
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=96.43 E-value=0.0024 Score=75.53 Aligned_cols=37 Identities=30% Similarity=0.461 Sum_probs=32.6
Q ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcc
Q psy5893 431 PLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSV 467 (1182)
Q Consensus 431 ~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SG 467 (1182)
|...+|.++||+||||-||||.|++|+|.+.|.-|..
T Consensus 95 P~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~ 131 (591)
T COG1245 95 PTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY 131 (591)
T ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC
Confidence 5578999999999999999999999999998755543
No 433
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=96.37 E-value=0.002 Score=77.34 Aligned_cols=40 Identities=15% Similarity=0.120 Sum_probs=35.0
Q ss_pred cccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCC
Q psy5893 423 HVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTK 462 (1182)
Q Consensus 423 ~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~ 462 (1182)
-+..+|..+.+..|++++|+|+||+||||||++|+++..+
T Consensus 162 GiraID~ll~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~ 201 (455)
T PRK07960 162 GVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTQA 201 (455)
T ss_pred cceeeeecccccCCcEEEEECCCCCCccHHHHHHhCCCCC
Confidence 3566676677999999999999999999999999999874
No 434
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.34 E-value=0.0029 Score=72.72 Aligned_cols=30 Identities=20% Similarity=0.385 Sum_probs=28.4
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccCCC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNFTK 462 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~ 462 (1182)
+..|..++|+||+||||||||++|++++++
T Consensus 141 v~~~~~ili~G~tGsGKTTll~al~~~~~~ 170 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFLKSLVDEIPK 170 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHHHHHHccCCc
Confidence 678999999999999999999999999984
No 435
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.33 E-value=0.0024 Score=64.80 Aligned_cols=24 Identities=42% Similarity=0.840 Sum_probs=22.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
+++|+||||||||||+++|++.++
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 478999999999999999999876
No 436
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.29 E-value=0.0031 Score=61.39 Aligned_cols=23 Identities=43% Similarity=0.749 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
+++|+|||||||||+.+.|+..+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999865
No 437
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.27 E-value=0.0031 Score=75.33 Aligned_cols=29 Identities=31% Similarity=0.334 Sum_probs=26.2
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 432 LEPPPIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 432 ~i~~GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
.+..|.+++||||||+||||+|+.|++.+
T Consensus 187 ~~~~g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 187 IIEQGGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999999864
No 438
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=96.24 E-value=0.0027 Score=71.98 Aligned_cols=25 Identities=36% Similarity=0.585 Sum_probs=23.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHccCCC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNFTK 462 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~~~ 462 (1182)
+++|+|+||||||||+++|++++.+
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~ 25 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGS 25 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCC
Confidence 5899999999999999999999974
No 439
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=96.23 E-value=0.0038 Score=72.41 Aligned_cols=37 Identities=22% Similarity=0.215 Sum_probs=31.7
Q ss_pred ccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCC
Q psy5893 426 QVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTK 462 (1182)
Q Consensus 426 ~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~ 462 (1182)
.+|....+.+|+.++|+|+||+||||||++|+|+..+
T Consensus 59 aiD~l~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~ 95 (326)
T cd01136 59 AIDGLLTVGKGQRLGIFAGSGVGKSTLLGMIARGTTA 95 (326)
T ss_pred EEeeeeEEcCCcEEEEECCCCCChHHHHHHHhCCCCC
Confidence 3444445899999999999999999999999999873
No 440
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.23 E-value=0.0032 Score=74.01 Aligned_cols=29 Identities=31% Similarity=0.576 Sum_probs=26.8
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHccCCC
Q psy5893 434 PPPIVVAVVGPPQVGKSTLIRCLIKNFTK 462 (1182)
Q Consensus 434 ~~GeivaIvGpsGsGKSTLLrlL~Gl~~~ 462 (1182)
.++.+++|+||+||||||+|++|++.+..
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~ 160 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAE 160 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 58999999999999999999999999853
No 441
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=96.15 E-value=0.0034 Score=75.21 Aligned_cols=38 Identities=18% Similarity=0.190 Sum_probs=32.3
Q ss_pred ccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 424 VPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 424 i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
+..+|..+.+..|+.++|+|+||+||||||++|++...
T Consensus 150 i~aID~ll~i~~GqrigI~G~sG~GKSTLL~~I~~~~~ 187 (444)
T PRK08972 150 VRAINAMLTVGKGQRMGLFAGSGVGKSVLLGMMTRGTT 187 (444)
T ss_pred ceeecceEEEcCCCEEEEECCCCCChhHHHHHhccCCC
Confidence 44455555699999999999999999999999999766
No 442
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=96.10 E-value=0.0041 Score=60.37 Aligned_cols=21 Identities=57% Similarity=0.885 Sum_probs=19.9
Q ss_pred EEEEcCCCCCHHHHHHHHHcc
Q psy5893 439 VAVVGPPQVGKSTLIRCLIKN 459 (1182)
Q Consensus 439 vaIvGpsGsGKSTLLrlL~Gl 459 (1182)
|+|+|++|+|||||++.|+|.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999984
No 443
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.10 E-value=0.003 Score=66.02 Aligned_cols=27 Identities=22% Similarity=0.255 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHH---ccCCC
Q psy5893 436 PIVVAVVGPPQVGKSTLIRCLI---KNFTK 462 (1182)
Q Consensus 436 GeivaIvGpsGsGKSTLLrlL~---Gl~~~ 462 (1182)
..+++|+||+||||||+++.|+ |+..+
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~ 32 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHL 32 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 3589999999999999999999 76653
No 444
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.08 E-value=0.0039 Score=75.66 Aligned_cols=29 Identities=31% Similarity=0.304 Sum_probs=26.8
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
+..|.+++|||||||||||++..|++.+.
T Consensus 253 ~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~ 281 (484)
T PRK06995 253 LDRGGVFALMGPTGVGKTTTTAKLAARCV 281 (484)
T ss_pred ccCCcEEEEECCCCccHHHHHHHHHHHHH
Confidence 56789999999999999999999999875
No 445
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=96.08 E-value=0.0041 Score=74.34 Aligned_cols=39 Identities=26% Similarity=0.207 Sum_probs=34.1
Q ss_pred ccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCC
Q psy5893 424 VPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTK 462 (1182)
Q Consensus 424 i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~ 462 (1182)
+..+|..+.+.+|+.++|+|+||+||||||++|+++..+
T Consensus 128 i~aiD~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~ 166 (418)
T TIGR03498 128 VRVIDTFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDA 166 (418)
T ss_pred cEEEeeeccccCCcEEEEECCCCCChHHHHHHHhCCCCC
Confidence 445566666999999999999999999999999999873
No 446
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=96.07 E-value=0.0044 Score=72.89 Aligned_cols=9 Identities=0% Similarity=-0.167 Sum_probs=4.2
Q ss_pred cCccccccC
Q psy5893 354 VNLAKYVYG 362 (1182)
Q Consensus 354 ~~~~~~vy~ 362 (1182)
..+++|.=+
T Consensus 280 ~SPkR~~SP 288 (458)
T PF10446_consen 280 TSPKRLRSP 288 (458)
T ss_pred CCcccccCC
Confidence 455554433
No 447
>PRK00098 GTPase RsgA; Reviewed
Probab=96.05 E-value=0.0052 Score=70.39 Aligned_cols=28 Identities=32% Similarity=0.452 Sum_probs=25.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHccCCC
Q psy5893 435 PPIVVAVVGPPQVGKSTLIRCLIKNFTK 462 (1182)
Q Consensus 435 ~GeivaIvGpsGsGKSTLLrlL~Gl~~~ 462 (1182)
.|.+++|+|+||+||||||++|.|....
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~~~~~~ 190 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALAPDLEL 190 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcCC
Confidence 5889999999999999999999998774
No 448
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=96.02 E-value=0.0041 Score=67.97 Aligned_cols=34 Identities=21% Similarity=0.271 Sum_probs=26.9
Q ss_pred ccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 424 VPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 424 i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
.++++++ ..+ ++++|+|||||||||||++|+++.
T Consensus 21 ~n~~~l~--~~~-~~~~l~Gpn~sGKstllr~i~~~~ 54 (216)
T cd03284 21 PNDTELD--PER-QILLITGPNMAGKSTYLRQVALIA 54 (216)
T ss_pred eeeEEec--CCc-eEEEEECCCCCChHHHHHHHHHHH
Confidence 3444554 333 999999999999999999998765
No 449
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=96.02 E-value=0.0045 Score=74.46 Aligned_cols=40 Identities=20% Similarity=0.198 Sum_probs=33.5
Q ss_pred ccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCC
Q psy5893 420 KKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTK 462 (1182)
Q Consensus 420 ~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~ 462 (1182)
+..+++.+ +.+.+|++++|+|+||+||||||++|+|+..+
T Consensus 145 g~~vid~l---~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~ 184 (438)
T PRK07721 145 GVRAIDSL---LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSA 184 (438)
T ss_pred chhhhhee---eeecCCcEEEEECCCCCCHHHHHHHHhcccCC
Confidence 33445555 44999999999999999999999999999884
No 450
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=96.00 E-value=0.0043 Score=61.50 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.8
Q ss_pred EEEEcCCCCCHHHHHHHHHccCC
Q psy5893 439 VAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 439 vaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
++|+|++|||||||++.|.+...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~ 24 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQF 24 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCC
Confidence 68999999999999999998743
No 451
>KOG0461|consensus
Probab=95.98 E-value=0.0063 Score=69.65 Aligned_cols=209 Identities=19% Similarity=0.225 Sum_probs=134.5
Q ss_pred cccCCCcEEEEEEecCChhhhhccCCCCceEEEecccccceeeEEEEEEEeccccccccccCCcEEEEecceeeeeecce
Q psy5893 607 EGFRAGLYIRVELDGMPCELIENFDPTYPLIVGGLQPGEETIGCVRARVKKHRWYGKILKSGNPVIMSVGWRRFQTLPIY 686 (1182)
Q Consensus 607 eg~~~G~yVri~i~~vp~~~~~~f~~~~plil~gLl~~E~k~~v~~~~ikrh~~~~~~lkskdpli~s~G~RRf~~~Piy 686 (1182)
..+..|..+-+.+..+...+++.- |+|. ..+=+..-.+-++++.-++|.++|+|+--+-+++|+--.-..-.|
T Consensus 257 tsa~~GdR~g~cVtqFd~klleRg------i~~~-pg~Lk~~~avl~~vepI~yfr~~i~sk~K~Hi~VgheTVMa~~~f 329 (522)
T KOG0461|consen 257 TSAAAGDRAGFCVTQFDEKLLERG------ICGP-PGTLKSTKAVLATVEPIQYFRKSINSKSKIHIAVGHETVMAECQF 329 (522)
T ss_pred hhhhcccceeeeeeccCHHHHhcc------ccCC-CcccceeeeeeEeecchHHHhhhhhhcceEEEEehhhhhhhheEE
Confidence 345556666565555444444431 1111 111123445667889999999999999999999999765554444
Q ss_pred ecccCcc---------eeeee-eccCC-CceE-----EEEEEeecccCCceEEEE-Eec-ccCCCCcEEEEEEEEecCCC
Q psy5893 687 SKQEDNM---------RYRML-KYTPQ-HVAC-----MAHFWGPITRSGTGFLAV-QDV-AKREPGFRVIATGTILDANQ 748 (1182)
Q Consensus 687 s~~~~n~---------r~k~l-ky~~~-~~~c-----~atfygPi~~~~t~vl~~-~~~-~~~~~~~ri~atG~v~~~d~ 748 (1182)
.....+. ..-++ -.+|. -.+| ..+|=-|++.|.-..++- .-. .-...+-|++.+|.+.-.-+
T Consensus 330 f~d~d~~~~tf~~~kEye~~E~d~~Pa~~~~~~~~~aL~~FEkpv~~P~~s~~i~s~ld~d~h~~~CRlAF~Gi~~~~l~ 409 (522)
T KOG0461|consen 330 FKDTDGTTSTFQLDKEYENGEFDMLPALLAPCDVIQALFSFEKPVFLPEYSNPIMSALDEDQHGSGCRLAFSGIFSQILP 409 (522)
T ss_pred eeccCCcccccccchhhhccccccChhhcCCchheeeeeeecccccCcccccHHHHhhhhhcCCCceEEEeeeehhhhCc
Confidence 4422211 01112 12232 1344 567888888776322211 111 12345689999999875554
Q ss_pred C----------ceeeEeEEEeeceeEEeec-eEEEeccCCChHhhccccCceeEeccCcCceeecccCCCCceeEEEecc
Q psy5893 749 T----------AEVTKKLKLTGVPMKIYKK-TAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGAFRATFED 817 (1182)
Q Consensus 749 ~----------~~i~Kki~LtG~P~KI~K~-ta~Ir~MF~s~~eV~~F~~~~l~T~sGirG~IK~~lg~t~G~fka~Fe~ 817 (1182)
+ +.|.||=-=.|+--++.+. .+++++||--.--..-|.|-++.+.+|-||.|-.+.| ..|.||.||-+
T Consensus 410 ~~~y~~~~LP~lrifkrK~k~G~veRv~~d~svI~~~lFK~etn~dlfvG~~v~lStGe~G~Ie~aFG-qsgKf~itf~~ 488 (522)
T KOG0461|consen 410 ESKYNGKNLPPLRIFKRKCKKGHVERVEKDFSVICTGLFKAETNFDLFVGFQVCLSTGERGKIEGAFG-QSGKFRITFAE 488 (522)
T ss_pred ccccccccCCchhhhhhhhcccchhhhhccHHHHHhhhhccccccceeeeeEEEeccCCccceecccc-CcceEEEEecc
Confidence 4 3445555556666665554 3567999998777888999999999999999999997 89999999999
Q ss_pred ccccCC
Q psy5893 818 KIMLSD 823 (1182)
Q Consensus 818 ki~~~D 823 (1182)
+|..--
T Consensus 489 ~lspe~ 494 (522)
T KOG0461|consen 489 KLSPEL 494 (522)
T ss_pred cCChhh
Confidence 986543
No 452
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=95.93 E-value=0.006 Score=62.64 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 437 IVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 437 eivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
-.++|+|++|||||||++.|.|..
T Consensus 15 ~~v~i~G~~g~GKStLl~~l~~~~ 38 (173)
T cd04155 15 PRILILGLDNAGKTTILKQLASED 38 (173)
T ss_pred cEEEEEccCCCCHHHHHHHHhcCC
Confidence 358999999999999999999974
No 453
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=95.92 E-value=0.0057 Score=69.68 Aligned_cols=28 Identities=36% Similarity=0.501 Sum_probs=25.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHccCCCC
Q psy5893 436 PIVVAVVGPPQVGKSTLIRCLIKNFTKT 463 (1182)
Q Consensus 436 GeivaIvGpsGsGKSTLLrlL~Gl~~~~ 463 (1182)
+.+++|+|+||+||||||++|.|...+.
T Consensus 161 ~k~~~~~G~sg~GKSTlin~l~~~~~~~ 188 (287)
T cd01854 161 GKTSVLVGQSGVGKSTLINALLPDLDLA 188 (287)
T ss_pred cceEEEECCCCCCHHHHHHHHhchhhcc
Confidence 5899999999999999999999998743
No 454
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.92 E-value=0.0047 Score=71.48 Aligned_cols=29 Identities=38% Similarity=0.551 Sum_probs=26.8
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHccCCC
Q psy5893 434 PPPIVVAVVGPPQVGKSTLIRCLIKNFTK 462 (1182)
Q Consensus 434 ~~GeivaIvGpsGsGKSTLLrlL~Gl~~~ 462 (1182)
.+|.+++|+|||||||||++..|++.+.+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~ 140 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKA 140 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 57899999999999999999999999873
No 455
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.90 E-value=0.0069 Score=61.72 Aligned_cols=29 Identities=28% Similarity=0.334 Sum_probs=27.0
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
+++|.+++|.|+.|||||||++.|+..+.
T Consensus 19 l~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 19 LDFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 57899999999999999999999999875
No 456
>PLN02796 D-glycerate 3-kinase
Probab=95.87 E-value=0.0051 Score=71.65 Aligned_cols=27 Identities=33% Similarity=0.663 Sum_probs=24.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHccCCC
Q psy5893 436 PIVVAVVGPPQVGKSTLIRCLIKNFTK 462 (1182)
Q Consensus 436 GeivaIvGpsGsGKSTLLrlL~Gl~~~ 462 (1182)
.-++||+|+||||||||+++|.+++.+
T Consensus 100 pliIGI~G~sGSGKSTLa~~L~~lL~~ 126 (347)
T PLN02796 100 PLVIGISAPQGCGKTTLVFALVYLFNA 126 (347)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 346999999999999999999999974
No 457
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=95.84 E-value=0.0073 Score=72.75 Aligned_cols=37 Identities=22% Similarity=0.233 Sum_probs=31.7
Q ss_pred cccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 425 PQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 425 ~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
..+|..+.+.+|+.++|+|+||+||||||++|+++..
T Consensus 152 ~~iD~l~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~ 188 (440)
T TIGR01026 152 RSIDGLLTVGKGQRIGIFAGSGVGKSTLLGMIARNTE 188 (440)
T ss_pred eeeeeccccCCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3344445599999999999999999999999999976
No 458
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=95.83 E-value=0.0071 Score=64.74 Aligned_cols=25 Identities=32% Similarity=0.356 Sum_probs=22.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHccCCC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNFTK 462 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~~~ 462 (1182)
-++|+|+||+|||||+++|+|...+
T Consensus 3 kI~i~G~~g~GKSSLin~L~g~~~~ 27 (197)
T cd04104 3 NIAVTGESGAGKSSFINALRGVGHE 27 (197)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCC
Confidence 3789999999999999999997663
No 459
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.81 E-value=0.0065 Score=63.62 Aligned_cols=29 Identities=24% Similarity=0.462 Sum_probs=26.6
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
.++|.+++|+|++||||||+.+.|.+.+.
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999998875
No 460
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=95.80 E-value=0.0067 Score=72.99 Aligned_cols=41 Identities=12% Similarity=0.081 Sum_probs=33.2
Q ss_pred ccccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 418 QAKKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 418 ~~~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
.++..+++.+ +.+.+|+.++|+|+||+|||||+++|+|+..
T Consensus 153 ~TGi~aID~l---~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~ 193 (451)
T PRK05688 153 DVGIRSINGL---LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTE 193 (451)
T ss_pred ccceeeecce---EEecCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3343444444 5599999999999999999999999999876
No 461
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.79 E-value=0.0063 Score=63.67 Aligned_cols=28 Identities=25% Similarity=0.383 Sum_probs=26.2
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 434 PPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 434 ~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
++|++++|+|++||||||+.+.|++.+.
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999999999886
No 462
>PRK01889 GTPase RsgA; Reviewed
Probab=95.79 E-value=0.0065 Score=71.34 Aligned_cols=32 Identities=31% Similarity=0.400 Sum_probs=28.9
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccCCCCC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTP 464 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~ 464 (1182)
+.+|++++|+|+||+|||||+++|+|...+..
T Consensus 192 L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~ 223 (356)
T PRK01889 192 LSGGKTVALLGSSGVGKSTLVNALLGEEVQKT 223 (356)
T ss_pred hhcCCEEEEECCCCccHHHHHHHHHHhcccce
Confidence 67899999999999999999999999988533
No 463
>PRK05922 type III secretion system ATPase; Validated
Probab=95.78 E-value=0.0071 Score=72.54 Aligned_cols=38 Identities=21% Similarity=0.250 Sum_probs=33.3
Q ss_pred ccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 424 VPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 424 i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
+..+|....+.+|+.++|+|+||+||||||++|++...
T Consensus 145 Ir~ID~ll~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~ 182 (434)
T PRK05922 145 IKAIDAFLTLGKGQRIGVFSEPGSGKSSLLSTIAKGSK 182 (434)
T ss_pred ceeecceEEEcCCcEEEEECCCCCChHHHHHHHhccCC
Confidence 44566666699999999999999999999999999876
No 464
>KOG2773|consensus
Probab=95.75 E-value=0.0029 Score=74.35 Aligned_cols=32 Identities=25% Similarity=0.216 Sum_probs=30.1
Q ss_pred CcCCCCCCCchhHHHhhhhhhhhhcCCCchhh
Q psy5893 259 TVVPQPRMSDKDLAIRHKITSALAGLNSKEEE 290 (1182)
Q Consensus 259 av~~q~~~~d~~l~~R~k~qk~~~~~ne~eEe 290 (1182)
|++.|.++||.+++.||++|++...+|++.-.
T Consensus 186 avknQ~klwD~ile~Ri~lQKa~~~anqLP~~ 217 (483)
T KOG2773|consen 186 AVKNQMKLWDNILELRIKLQKADDDANQLPQP 217 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCh
Confidence 88999999999999999999999999999765
No 465
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.75 E-value=0.006 Score=64.80 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=23.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 437 IVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 437 eivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
-+++|+|+||||||||++.|++++.
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHh
Confidence 3899999999999999999999986
No 466
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.74 E-value=0.0059 Score=67.25 Aligned_cols=34 Identities=21% Similarity=0.220 Sum_probs=29.0
Q ss_pred ccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHcc
Q psy5893 424 VPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKN 459 (1182)
Q Consensus 424 i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl 459 (1182)
..++++. +.+|++++|+||||+||||||++|+++
T Consensus 21 ~n~i~~~--~~~g~~~~itG~N~~GKStll~~i~~~ 54 (222)
T cd03287 21 PNDIHLS--AEGGYCQIITGPNMGGKSSYIRQVALI 54 (222)
T ss_pred EEeEEEE--ecCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3444554 789999999999999999999999994
No 467
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=95.73 E-value=0.0092 Score=71.61 Aligned_cols=41 Identities=15% Similarity=0.151 Sum_probs=33.5
Q ss_pred cccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCC
Q psy5893 419 AKKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTK 462 (1182)
Q Consensus 419 ~~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~ 462 (1182)
++..+++.+ +.+..|+.++|+|+||+||||||++|+++..+
T Consensus 131 tG~~~id~l---~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~ 171 (422)
T TIGR02546 131 TGVRAIDGL---LTCGEGQRIGIFAGAGVGKSTLLGMIARGASA 171 (422)
T ss_pred CCceeehhh---ccccCCCEEEEECCCCCChHHHHHHHhCCCCC
Confidence 343444444 44899999999999999999999999998873
No 468
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.73 E-value=0.0078 Score=65.17 Aligned_cols=27 Identities=26% Similarity=0.566 Sum_probs=23.9
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 434 PPPIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 434 ~~GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
..|.+++|+||||||||||++.|....
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~~ 37 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRERK 37 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhcC
Confidence 468899999999999999999998653
No 469
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=95.66 E-value=0.0078 Score=60.23 Aligned_cols=23 Identities=43% Similarity=0.699 Sum_probs=20.4
Q ss_pred EEEEcCCCCCHHHHHHHHH--ccCC
Q psy5893 439 VAVVGPPQVGKSTLIRCLI--KNFT 461 (1182)
Q Consensus 439 vaIvGpsGsGKSTLLrlL~--Gl~~ 461 (1182)
++|+|++|||||||++.|+ +...
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~ 26 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLA 26 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCcee
Confidence 6899999999999999999 5544
No 470
>KOG0062|consensus
Probab=95.64 E-value=0.006 Score=73.27 Aligned_cols=33 Identities=27% Similarity=0.370 Sum_probs=27.8
Q ss_pred ccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHc
Q psy5893 424 VPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIK 458 (1182)
Q Consensus 424 i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~G 458 (1182)
+..-+++ +..|--.||||+||+|||||||+|+.
T Consensus 96 L~~a~L~--L~~GrRYGLvGrNG~GKsTLLRaia~ 128 (582)
T KOG0062|consen 96 LNKANLT--LSRGRRYGLVGRNGIGKSTLLRAIAN 128 (582)
T ss_pred hcCCcee--eecccccceeCCCCCcHHHHHHHHHh
Confidence 3333444 78999999999999999999999997
No 471
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.63 E-value=0.0077 Score=64.84 Aligned_cols=25 Identities=36% Similarity=0.514 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 437 IVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 437 eivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
.++.|+||+||||||++++|++.+.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3689999999999999999988876
No 472
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.62 E-value=0.0089 Score=59.71 Aligned_cols=24 Identities=42% Similarity=0.715 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
++.|+||+|||||||++.|.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999986654
No 473
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.61 E-value=0.0091 Score=63.88 Aligned_cols=26 Identities=35% Similarity=0.691 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 435 PPIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 435 ~GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
.|-+++|.||||+|||||+++|.--.
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc
Confidence 68899999999999999999998654
No 474
>PRK08233 hypothetical protein; Provisional
Probab=95.61 E-value=0.0097 Score=61.92 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=23.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 436 PIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 436 GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
+.+++|.|++|||||||.+.|+..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 57899999999999999999998875
No 475
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=95.59 E-value=0.0072 Score=72.48 Aligned_cols=37 Identities=27% Similarity=0.295 Sum_probs=31.6
Q ss_pred ccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCC
Q psy5893 426 QVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTK 462 (1182)
Q Consensus 426 ~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~ 462 (1182)
.+|..+.+..|+.++|+|+||+||||||++|+++..+
T Consensus 145 aID~ll~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~ 181 (433)
T PRK07594 145 AIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDA 181 (433)
T ss_pred eeeeeeecCCCCEEEEECCCCCCccHHHHHhcCCCCC
Confidence 3343355999999999999999999999999998873
No 476
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=95.54 E-value=0.0035 Score=65.94 Aligned_cols=23 Identities=26% Similarity=0.584 Sum_probs=0.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
+.+|+|||||||||+|++|..+.
T Consensus 1 i~viiG~N~sGKS~il~ai~~~~ 23 (303)
T PF13304_consen 1 INVIIGPNGSGKSNILEAIYFLF 23 (303)
T ss_dssp -----------------------
T ss_pred CCccccccccccccccccccccc
Confidence 46899999999999999998875
No 477
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.54 E-value=0.0095 Score=57.49 Aligned_cols=23 Identities=39% Similarity=0.530 Sum_probs=20.8
Q ss_pred EEEEcCCCCCHHHHHHHHHccCC
Q psy5893 439 VAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 439 vaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
++|+|++||||||||+.|++...
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 78999999999999999998876
No 478
>PRK09099 type III secretion system ATPase; Provisional
Probab=95.54 E-value=0.011 Score=71.31 Aligned_cols=40 Identities=20% Similarity=0.199 Sum_probs=33.2
Q ss_pred cccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 419 AKKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 419 ~~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
++..+++.+ + .+.+|++++|+|+||+||||||++|+++..
T Consensus 149 TGi~~ID~l-~--~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~ 188 (441)
T PRK09099 149 TGVRIVDGL-M--TLGEGQRMGIFAPAGVGKSTLMGMFARGTQ 188 (441)
T ss_pred CCceeccce-e--eecCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 344455555 3 489999999999999999999999999887
No 479
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.51 E-value=0.0094 Score=71.23 Aligned_cols=39 Identities=18% Similarity=0.163 Sum_probs=33.1
Q ss_pred ccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCC
Q psy5893 424 VPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTK 462 (1182)
Q Consensus 424 i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~ 462 (1182)
+..+|..+.+.+|++++|+|+||+||||||++|+++..+
T Consensus 125 i~~id~l~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~~ 163 (411)
T TIGR03496 125 VRAINGLLTVGRGQRMGIFAGSGVGKSTLLGMMARYTEA 163 (411)
T ss_pred EEeecceEEEecCcEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 444555556999999999999999999999999998773
No 480
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=95.47 E-value=0.0092 Score=71.71 Aligned_cols=39 Identities=21% Similarity=0.160 Sum_probs=35.6
Q ss_pred cccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 423 HVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 423 ~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
-+..+|..+.+.+|+.++|+|+||+||||||++|+++..
T Consensus 145 Gir~ID~l~~i~~Gqri~I~G~sG~GKTtLL~~I~~~~~ 183 (442)
T PRK08927 145 GVRALNTFLTCCRGQRMGIFAGSGVGKSVLLSMLARNAD 183 (442)
T ss_pred ceEEEeeeeEEcCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 467778888899999999999999999999999999887
No 481
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=95.46 E-value=0.0083 Score=71.13 Aligned_cols=37 Identities=22% Similarity=0.273 Sum_probs=33.1
Q ss_pred cccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 425 PQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 425 ~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
..+|+...+.+|+.++|+||+|||||||+++|+..+.
T Consensus 157 R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 157 RVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred eeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 4557777799999999999999999999999998876
No 482
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=95.44 E-value=0.012 Score=65.83 Aligned_cols=36 Identities=28% Similarity=0.347 Sum_probs=31.6
Q ss_pred ccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 426 QVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 426 ~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
.+|.-..+..|+.++|+||+|+|||||++.|+..+.
T Consensus 6 ~id~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~ 41 (249)
T cd01128 6 VVDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAIT 41 (249)
T ss_pred heeeecccCCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 455555688999999999999999999999998876
No 483
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=95.44 E-value=0.013 Score=61.03 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 435 PPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 435 ~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
.|.+++|+|||||||||+|+++....-
T Consensus 20 ~~~~~~i~G~NgsGKS~~l~~i~~~~~ 46 (162)
T cd03227 20 EGSLTIITGPNGSGKSTILDAIGLALG 46 (162)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346999999999999999999876654
No 484
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.43 E-value=0.0099 Score=65.63 Aligned_cols=29 Identities=24% Similarity=0.288 Sum_probs=26.9
Q ss_pred CCCCcEEEEEcCCCCCHHHH-HHHHHccCC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTL-IRCLIKNFT 461 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTL-LrlL~Gl~~ 461 (1182)
+++|+++.|+|+|||||||| +++++++..
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~ 50 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQ 50 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 78999999999999999999 799998876
No 485
>PLN02318 phosphoribulokinase/uridine kinase
Probab=95.41 E-value=0.0099 Score=73.31 Aligned_cols=34 Identities=21% Similarity=0.335 Sum_probs=27.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcc
Q psy5893 437 IVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVT 473 (1182)
Q Consensus 437 eivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdg 473 (1182)
-+|+|.||||||||||+++|+++++ ..+.+.+++
T Consensus 66 iIIGIaGpSGSGKTTLAk~LaglLp---~vgvIsmDd 99 (656)
T PLN02318 66 ILVGVAGPSGAGKTVFTEKVLNFMP---SIAVISMDN 99 (656)
T ss_pred EEEEEECCCCCcHHHHHHHHHhhCC---CcEEEEEcc
Confidence 5899999999999999999999974 344554444
No 486
>PRK07261 topology modulation protein; Provisional
Probab=95.41 E-value=0.011 Score=62.28 Aligned_cols=24 Identities=38% Similarity=0.584 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
.++|+|+||||||||.+.|+..+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~ 25 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYN 25 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Confidence 479999999999999999987654
No 487
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.40 E-value=0.01 Score=53.33 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
+++|.|++||||||+.+.|...+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999886
No 488
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.39 E-value=0.011 Score=62.40 Aligned_cols=29 Identities=28% Similarity=0.353 Sum_probs=27.0
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
..+|.+++|+|++|||||||++.|.+.+.
T Consensus 15 ~~~~~~i~i~G~~GsGKstla~~l~~~l~ 43 (184)
T TIGR00455 15 GHRGVVIWLTGLSGSGKSTIANALEKKLE 43 (184)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999999999875
No 489
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=95.39 E-value=0.0096 Score=62.26 Aligned_cols=26 Identities=27% Similarity=0.462 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 436 PIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 436 GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
..+++|+||||+||||+|.+|.-++.
T Consensus 19 ~g~~vi~G~Ng~GKStil~ai~~~L~ 44 (202)
T PF13476_consen 19 PGLNVIYGPNGSGKSTILEAIRYALG 44 (202)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 35999999999999999999988775
No 490
>PRK09862 putative ATP-dependent protease; Provisional
Probab=95.37 E-value=0.013 Score=71.74 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=34.0
Q ss_pred cccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCC
Q psy5893 423 HVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPL 465 (1182)
Q Consensus 423 ~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~ 465 (1182)
.+..+.+. ...|.+++|+||||||||||+++|.|++++..+
T Consensus 199 ~~~al~la--a~~G~~llliG~~GsGKTtLak~L~gllpp~~g 239 (506)
T PRK09862 199 GKRGLEIT--AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSN 239 (506)
T ss_pred HHhhhhee--ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCC
Confidence 44445555 789999999999999999999999999995444
No 491
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=95.37 E-value=0.012 Score=58.62 Aligned_cols=24 Identities=50% Similarity=0.706 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 437 IVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 437 eivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
-.++|+|++|||||||++.|+|..
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~~ 27 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQK 27 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCc
Confidence 368999999999999999999864
No 492
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=95.36 E-value=0.013 Score=58.36 Aligned_cols=25 Identities=44% Similarity=0.632 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 436 PIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 436 GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
|..++|+|++|||||||++.|.+..
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~ 25 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRD 25 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCc
Confidence 5679999999999999999999864
No 493
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.35 E-value=0.013 Score=69.34 Aligned_cols=29 Identities=34% Similarity=0.361 Sum_probs=26.6
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 432 LEPPPIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 432 ~i~~GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
.+..|.+++|+||||+||||++..|++.+
T Consensus 133 ~~~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 133 LMERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 47889999999999999999999999865
No 494
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=95.28 E-value=0.012 Score=60.01 Aligned_cols=22 Identities=41% Similarity=0.631 Sum_probs=20.1
Q ss_pred EEEEcCCCCCHHHHHHHHHccC
Q psy5893 439 VAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 439 vaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
++|||++|||||||+++|.+..
T Consensus 3 v~ivG~~~~GKStl~~~l~~~~ 24 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAISNAK 24 (170)
T ss_pred eEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999999754
No 495
>PRK06936 type III secretion system ATPase; Provisional
Probab=95.28 E-value=0.014 Score=70.04 Aligned_cols=40 Identities=18% Similarity=0.133 Sum_probs=33.0
Q ss_pred cccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 419 AKKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 419 ~~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
++...++.+ ..+..|+.++|+|+||+||||||++|++...
T Consensus 148 TGi~vid~l---~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~~ 187 (439)
T PRK06936 148 LGVRVIDGL---LTCGEGQRMGIFAAAGGGKSTLLASLIRSAE 187 (439)
T ss_pred CCcceeeee---EEecCCCEEEEECCCCCChHHHHHHHhcCCC
Confidence 343444444 4489999999999999999999999999876
No 496
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.27 E-value=0.011 Score=63.05 Aligned_cols=24 Identities=29% Similarity=0.617 Sum_probs=22.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
+|+|.||||||||||.+.|..++.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999999887
No 497
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=95.26 E-value=0.015 Score=60.03 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=22.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHccCCC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNFTK 462 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~~~ 462 (1182)
.+.||||+|||||||+++|.|....
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~ 27 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIR 27 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCC
Confidence 4789999999999999999998753
No 498
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.25 E-value=0.015 Score=62.21 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=0.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 435 PPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 435 ~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
+|-+++|+||||||||||++.|...++
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~ 29 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHP 29 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCC
No 499
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.25 E-value=0.011 Score=61.05 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=0.0
Q ss_pred EEEEcCCCCCHHHHHHHHHccC
Q psy5893 439 VAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 439 vaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
++|+||+||||||+.+.|++.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
No 500
>PLN02165 adenylate isopentenyltransferase
Probab=95.25 E-value=0.014 Score=67.74 Aligned_cols=28 Identities=32% Similarity=0.354 Sum_probs=0.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 434 PPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 434 ~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
.+|.+++|+||+|||||||...|++.+.
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~LA~~l~ 68 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVDLATRFP 68 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHcC
Done!