Query psy5893
Match_columns 1182
No_of_seqs 793 out of 2488
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 20:58:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5893.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5893hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wb1_A Translation elongation 99.7 1.2E-17 4.1E-22 198.5 9.7 167 661-833 303-480 (482)
2 3gfo_A Cobalt import ATP-bindi 98.9 5.2E-10 1.8E-14 124.1 3.5 73 411-487 11-93 (275)
3 3tif_A Uncharacterized ABC tra 98.9 8.1E-10 2.8E-14 119.5 3.8 66 422-491 19-96 (235)
4 3fvq_A Fe(3+) IONS import ATP- 98.9 1E-09 3.5E-14 126.0 4.8 67 421-491 17-93 (359)
5 3tui_C Methionine import ATP-b 98.8 1.5E-09 5E-14 124.9 4.7 67 422-492 42-119 (366)
6 1mv5_A LMRA, multidrug resista 98.8 2.2E-09 7.5E-14 116.5 5.9 67 421-491 15-89 (243)
7 3nh6_A ATP-binding cassette SU 98.8 1.4E-09 4.7E-14 122.4 4.2 85 410-498 56-148 (306)
8 3rlf_A Maltose/maltodextrin im 98.8 1.6E-09 5.6E-14 125.1 4.8 67 421-491 16-88 (381)
9 1vpl_A ABC transporter, ATP-bi 98.8 1.8E-09 6.1E-14 118.5 4.2 77 409-490 17-100 (256)
10 2yyz_A Sugar ABC transporter, 98.8 2.2E-09 7.5E-14 123.3 4.9 67 421-491 16-88 (359)
11 2pcj_A ABC transporter, lipopr 98.8 1.6E-09 5.4E-14 116.4 3.4 66 421-490 17-94 (224)
12 2it1_A 362AA long hypothetical 98.8 2.5E-09 8.6E-14 122.9 4.9 67 421-491 16-88 (362)
13 1g6h_A High-affinity branched- 98.8 1.9E-09 6.6E-14 118.0 3.8 66 421-490 20-94 (257)
14 2ff7_A Alpha-hemolysin translo 98.8 2.6E-09 8.9E-14 116.5 4.6 67 421-491 22-96 (247)
15 1ji0_A ABC transporter; ATP bi 98.8 2.2E-09 7.4E-14 116.5 3.8 67 421-491 19-94 (240)
16 2olj_A Amino acid ABC transpor 98.8 2.2E-09 7.6E-14 118.2 4.0 66 421-490 37-112 (263)
17 1z47_A CYSA, putative ABC-tran 98.8 2.6E-09 8.9E-14 122.5 4.6 67 421-491 28-100 (355)
18 1v43_A Sugar-binding transport 98.8 2.6E-09 9E-14 123.2 4.6 66 421-490 24-95 (372)
19 2ixe_A Antigen peptide transpo 98.8 3.5E-09 1.2E-13 117.0 5.3 67 421-491 32-106 (271)
20 1g29_1 MALK, maltose transport 98.8 2.4E-09 8.3E-14 123.5 4.1 67 421-491 16-94 (372)
21 1sgw_A Putative ABC transporte 98.8 2.4E-09 8.1E-14 114.6 3.7 65 422-490 23-90 (214)
22 1b0u_A Histidine permease; ABC 98.8 2.7E-09 9.3E-14 117.3 4.2 65 422-490 20-105 (262)
23 2cbz_A Multidrug resistance-as 98.8 3.3E-09 1.1E-13 114.8 4.5 60 421-489 18-77 (237)
24 1oxx_K GLCV, glucose, ABC tran 98.7 2.6E-09 8.7E-14 122.5 3.1 65 423-491 20-95 (353)
25 2yz2_A Putative ABC transporte 98.7 3.8E-09 1.3E-13 116.3 4.4 62 422-487 21-87 (266)
26 2pze_A Cystic fibrosis transme 98.7 5.1E-09 1.7E-13 112.8 5.1 62 421-491 21-82 (229)
27 3d31_A Sulfate/molybdate ABC t 98.7 3E-09 1E-13 121.8 3.4 65 423-491 15-85 (348)
28 4g1u_C Hemin import ATP-bindin 98.7 4.7E-09 1.6E-13 115.8 4.3 65 421-489 24-96 (266)
29 2ihy_A ABC transporter, ATP-bi 98.7 4.1E-09 1.4E-13 117.0 3.4 64 421-488 34-107 (279)
30 2ghi_A Transport protein; mult 98.7 8E-09 2.7E-13 113.4 5.3 65 422-491 34-106 (260)
31 2d2e_A SUFC protein; ABC-ATPas 98.7 5.6E-09 1.9E-13 113.9 2.8 66 421-490 16-92 (250)
32 2nq2_C Hypothetical ABC transp 98.7 8.8E-09 3E-13 112.7 4.2 61 421-490 18-78 (253)
33 2zu0_C Probable ATP-dependent 98.7 8E-09 2.7E-13 113.8 3.6 68 421-490 33-109 (267)
34 2onk_A Molybdate/tungstate ABC 98.6 1.1E-08 3.9E-13 111.1 4.5 63 423-490 14-82 (240)
35 3gd7_A Fusion complex of cysti 98.6 1.2E-08 4.2E-13 118.3 4.4 77 410-491 22-107 (390)
36 2qi9_C Vitamin B12 import ATP- 98.6 9.2E-09 3.1E-13 112.4 2.4 64 422-490 14-85 (249)
37 2bbs_A Cystic fibrosis transme 98.6 2.2E-08 7.5E-13 111.8 4.1 62 421-491 51-112 (290)
38 3qf4_B Uncharacterized ABC tra 98.5 4E-08 1.4E-12 119.8 5.5 85 410-498 357-449 (598)
39 3b5x_A Lipid A export ATP-bind 98.5 6.2E-08 2.1E-12 117.7 6.3 84 410-497 344-436 (582)
40 2pjz_A Hypothetical protein ST 98.5 4E-08 1.4E-12 108.2 3.8 63 421-489 18-86 (263)
41 4a82_A Cystic fibrosis transme 98.5 4.7E-08 1.6E-12 118.6 4.7 86 410-499 342-436 (578)
42 3b60_A Lipid A export ATP-bind 98.5 6.3E-08 2.2E-12 117.6 5.7 85 410-498 344-437 (582)
43 2yl4_A ATP-binding cassette SU 98.4 8.2E-08 2.8E-12 116.9 4.9 85 410-498 344-438 (595)
44 3qf4_A ABC transporter, ATP-bi 98.4 7.8E-08 2.7E-12 117.0 4.4 85 410-498 344-437 (587)
45 1htw_A HI0065; nucleotide-bind 98.4 1.1E-07 3.9E-12 97.0 3.6 63 422-489 21-86 (158)
46 1z6g_A Guanylate kinase; struc 98.4 1.4E-07 4.8E-12 100.4 3.9 57 424-488 13-78 (218)
47 1znw_A Guanylate kinase, GMP k 98.3 4.2E-07 1.4E-11 95.4 4.8 56 432-489 16-75 (207)
48 1s96_A Guanylate kinase, GMP k 98.3 4.4E-07 1.5E-11 97.2 4.5 56 433-488 13-72 (219)
49 4f4c_A Multidrug resistance pr 98.3 3.2E-07 1.1E-11 121.1 4.2 88 408-499 1077-1174(1321)
50 3b85_A Phosphate starvation-in 98.2 1.6E-07 5.4E-12 100.0 0.5 52 433-487 19-75 (208)
51 4f4c_A Multidrug resistance pr 98.2 5.7E-07 1.9E-11 118.8 5.4 88 409-500 417-514 (1321)
52 3g5u_A MCG1178, multidrug resi 98.2 7.9E-07 2.7E-11 117.1 5.2 86 410-499 390-485 (1284)
53 3g5u_A MCG1178, multidrug resi 98.1 1.7E-06 5.7E-11 114.1 7.1 73 422-498 1047-1127(1284)
54 3tr0_A Guanylate kinase, GMP k 98.1 1.8E-06 6.3E-11 89.2 5.4 29 433-461 4-32 (205)
55 1yqt_A RNAse L inhibitor; ATP- 98.1 1.9E-06 6.5E-11 103.9 6.1 39 427-466 39-77 (538)
56 1yqt_A RNAse L inhibitor; ATP- 98.1 1.4E-06 4.7E-11 105.1 4.3 57 424-489 302-358 (538)
57 3bk7_A ABC transporter ATP-bin 98.1 1.4E-06 4.8E-11 106.5 4.3 57 424-489 372-428 (607)
58 2jeo_A Uridine-cytidine kinase 98.0 2.2E-06 7.4E-11 92.4 4.4 56 421-486 12-67 (245)
59 2iw3_A Elongation factor 3A; a 98.0 1.1E-06 3.8E-11 111.9 1.7 60 421-487 686-745 (986)
60 3bk7_A ABC transporter ATP-bin 98.0 3.3E-06 1.1E-10 103.2 5.8 35 432-466 113-147 (607)
61 3euj_A Chromosome partition pr 98.0 2.1E-06 7.2E-11 102.1 3.5 49 422-475 18-66 (483)
62 3ozx_A RNAse L inhibitor; ATP 98.0 2.9E-06 9.8E-11 102.4 4.6 36 431-466 20-55 (538)
63 3aez_A Pantothenate kinase; tr 98.0 3E-06 1E-10 95.5 4.3 47 433-490 87-133 (312)
64 4gp7_A Metallophosphoesterase; 98.0 1.9E-06 6.5E-11 88.1 2.2 25 433-457 6-30 (171)
65 2dpy_A FLII, flagellum-specifi 98.0 2.2E-06 7.6E-11 100.9 3.1 54 416-474 140-193 (438)
66 3j16_B RLI1P; ribosome recycli 98.0 4.6E-06 1.6E-10 102.0 5.6 37 430-466 97-133 (608)
67 2npi_A Protein CLP1; CLP1-PCF1 98.0 1.8E-06 6.1E-11 102.3 1.9 57 427-488 131-189 (460)
68 3ozx_A RNAse L inhibitor; ATP 98.0 3E-06 1E-10 102.2 3.8 49 432-486 290-338 (538)
69 4a74_A DNA repair and recombin 97.9 1.7E-06 5.7E-11 90.7 1.3 34 432-465 21-54 (231)
70 3lnc_A Guanylate kinase, GMP k 97.9 3E-06 1E-10 90.1 2.9 37 423-461 16-53 (231)
71 1tq4_A IIGP1, interferon-induc 97.9 1.9E-06 6.5E-11 100.7 1.4 61 422-487 37-117 (413)
72 3b9q_A Chloroplast SRP recepto 97.9 4.1E-06 1.4E-10 94.0 3.5 40 432-473 96-135 (302)
73 2v9p_A Replication protein E1; 97.9 2.6E-06 8.8E-11 95.9 1.7 37 422-460 114-150 (305)
74 3c8u_A Fructokinase; YP_612366 97.8 4.5E-06 1.5E-10 87.6 2.5 30 433-462 19-48 (208)
75 2gza_A Type IV secretion syste 97.8 3.6E-06 1.2E-10 96.6 1.8 58 425-486 166-230 (361)
76 3sop_A Neuronal-specific septi 97.8 5.6E-06 1.9E-10 91.4 3.1 49 438-488 4-57 (270)
77 1lvg_A Guanylate kinase, GMP k 97.8 5.9E-06 2E-10 86.5 2.9 28 434-461 2-29 (198)
78 2obl_A ESCN; ATPase, hydrolase 97.8 5.1E-06 1.7E-10 95.0 2.5 45 415-462 53-97 (347)
79 2qag_B Septin-6, protein NEDD5 97.8 6.8E-06 2.3E-10 96.3 3.4 61 424-488 30-92 (427)
80 1u0l_A Probable GTPase ENGC; p 97.8 9.9E-06 3.4E-10 90.4 4.6 54 433-488 166-230 (301)
81 2eyu_A Twitching motility prot 97.8 5.1E-06 1.7E-10 91.3 1.6 40 433-473 22-61 (261)
82 1rj9_A FTSY, signal recognitio 97.8 8.5E-06 2.9E-10 91.5 3.3 38 434-473 100-137 (304)
83 2i3b_A HCR-ntpase, human cance 97.8 7.9E-06 2.7E-10 85.6 2.8 48 436-487 1-54 (189)
84 3a00_A Guanylate kinase, GMP k 97.8 1E-05 3.4E-10 83.5 3.4 26 436-461 1-26 (186)
85 1zp6_A Hypothetical protein AT 97.8 1.1E-05 3.9E-10 82.4 3.8 28 433-460 6-33 (191)
86 2og2_A Putative signal recogni 97.8 9.7E-06 3.3E-10 93.2 3.5 40 432-473 153-192 (359)
87 2yhs_A FTSY, cell division pro 97.8 1.1E-05 3.6E-10 96.2 3.7 36 430-465 287-322 (503)
88 1tf7_A KAIC; homohexamer, hexa 97.7 5.8E-06 2E-10 99.1 1.2 63 420-486 24-96 (525)
89 3j16_B RLI1P; ribosome recycli 97.7 1.4E-05 4.7E-10 97.8 3.6 54 424-486 363-421 (608)
90 2pt7_A CAG-ALFA; ATPase, prote 97.7 4.5E-06 1.5E-10 94.7 -0.6 47 423-473 160-206 (330)
91 2qm8_A GTPase/ATPase; G protei 97.7 8.6E-06 3E-10 92.6 1.1 40 422-463 43-82 (337)
92 3asz_A Uridine kinase; cytidin 97.7 1.6E-05 5.4E-10 82.9 2.9 29 433-461 3-31 (211)
93 1kgd_A CASK, peripheral plasma 97.6 2.1E-05 7.3E-10 80.7 3.7 27 435-461 4-30 (180)
94 2ehv_A Hypothetical protein PH 97.6 1.8E-05 6E-10 84.0 2.9 30 432-461 26-57 (251)
95 2j41_A Guanylate kinase; GMP, 97.6 3E-05 1E-09 80.1 4.2 29 433-461 3-31 (207)
96 1qhl_A Protein (cell division 97.5 6.1E-06 2.1E-10 89.1 -2.3 35 437-473 28-62 (227)
97 2yv5_A YJEQ protein; hydrolase 97.5 5.5E-05 1.9E-09 84.6 5.4 53 433-488 162-225 (302)
98 1lw7_A Transcriptional regulat 97.5 2.5E-05 8.5E-10 89.3 2.6 37 426-464 160-198 (365)
99 3ux8_A Excinuclease ABC, A sub 97.5 2.5E-05 8.6E-10 96.3 2.7 42 420-463 30-92 (670)
100 3szr_A Interferon-induced GTP- 97.5 3.9E-05 1.3E-09 93.8 4.3 51 439-490 48-109 (608)
101 3kta_A Chromosome segregation 97.5 8E-05 2.7E-09 75.8 5.7 31 433-464 24-54 (182)
102 1sq5_A Pantothenate kinase; P- 97.5 4.1E-05 1.4E-09 85.7 3.8 29 433-461 77-105 (308)
103 3e70_C DPA, signal recognition 97.5 3.1E-05 1.1E-09 87.9 2.3 40 433-474 126-165 (328)
104 1t9h_A YLOQ, probable GTPase E 97.5 2.4E-05 8.2E-10 88.1 1.1 55 433-489 170-234 (307)
105 4e22_A Cytidylate kinase; P-lo 97.5 2.8E-05 9.6E-10 84.4 1.6 32 433-464 24-58 (252)
106 1ye8_A Protein THEP1, hypothet 97.5 4.2E-05 1.4E-09 79.2 2.7 24 438-461 2-25 (178)
107 3tau_A Guanylate kinase, GMP k 97.4 6.7E-05 2.3E-09 78.9 4.1 29 434-462 6-34 (208)
108 4eun_A Thermoresistant glucoki 97.4 6.2E-05 2.1E-09 78.3 3.1 28 433-460 26-53 (200)
109 1cr0_A DNA primase/helicase; R 97.4 5E-05 1.7E-09 83.7 2.6 40 422-463 23-62 (296)
110 2ewv_A Twitching motility prot 97.4 5.3E-05 1.8E-09 87.2 2.4 31 433-463 133-163 (372)
111 2rcn_A Probable GTPase ENGC; Y 97.3 0.00011 3.9E-09 84.3 4.5 54 434-489 213-272 (358)
112 3uie_A Adenylyl-sulfate kinase 97.3 8.6E-05 2.9E-09 77.2 3.1 29 433-461 22-50 (200)
113 2iw3_A Elongation factor 3A; a 97.3 6.8E-05 2.3E-09 95.8 2.1 36 421-458 448-483 (986)
114 2bbw_A Adenylate kinase 4, AK4 97.3 8.2E-05 2.8E-09 79.9 2.4 28 435-462 26-56 (246)
115 3ux8_A Excinuclease ABC, A sub 97.3 6E-05 2E-09 93.0 1.4 35 421-457 335-369 (670)
116 1p9r_A General secretion pathw 97.2 0.00011 3.8E-09 86.0 3.2 31 433-463 164-194 (418)
117 2oap_1 GSPE-2, type II secreti 97.2 9.5E-05 3.2E-09 88.7 2.5 45 424-472 250-294 (511)
118 1pui_A ENGB, probable GTP-bind 97.2 9.1E-05 3.1E-09 76.4 2.0 30 431-460 21-50 (210)
119 2bdt_A BH3686; alpha-beta prot 97.2 0.00013 4.4E-09 74.8 2.8 23 436-458 2-24 (189)
120 3jvv_A Twitching mobility prot 97.2 9.9E-05 3.4E-09 84.7 1.8 31 433-463 120-150 (356)
121 3ney_A 55 kDa erythrocyte memb 97.2 0.00018 6.3E-09 76.0 3.6 28 434-461 17-44 (197)
122 4aby_A DNA repair protein RECN 97.1 8E-05 2.7E-09 85.8 0.8 39 423-464 50-88 (415)
123 2qt1_A Nicotinamide riboside k 97.1 0.00026 8.8E-09 73.7 4.6 36 426-461 11-46 (207)
124 2vp4_A Deoxynucleoside kinase; 97.1 0.00016 5.5E-09 77.1 3.1 27 433-459 17-43 (230)
125 3ec2_A DNA replication protein 97.1 4.7E-05 1.6E-09 77.6 -1.0 30 433-462 35-64 (180)
126 1knq_A Gluconate kinase; ALFA/ 97.1 0.00018 6.2E-09 72.7 3.0 27 434-460 6-32 (175)
127 2f1r_A Molybdopterin-guanine d 97.1 7E-05 2.4E-09 77.3 -0.1 38 437-474 3-41 (171)
128 1kag_A SKI, shikimate kinase I 97.1 0.00018 6.3E-09 72.2 2.8 27 435-461 3-29 (173)
129 3vaa_A Shikimate kinase, SK; s 97.1 0.00021 7.2E-09 74.3 3.1 36 424-461 15-50 (199)
130 2w0m_A SSO2452; RECA, SSPF, un 97.1 0.00019 6.5E-09 74.8 2.6 29 433-461 20-48 (235)
131 1rz3_A Hypothetical protein rb 97.0 0.00021 7.1E-09 74.6 2.7 29 433-461 19-47 (201)
132 1pzn_A RAD51, DNA repair and r 97.0 0.00014 4.9E-09 82.9 1.5 59 432-490 127-192 (349)
133 1svm_A Large T antigen; AAA+ f 96.9 0.00022 7.6E-09 82.4 1.4 37 423-461 158-194 (377)
134 2kjq_A DNAA-related protein; s 96.9 0.00034 1.1E-08 70.3 2.3 28 435-462 35-62 (149)
135 3thx_B DNA mismatch repair pro 96.8 0.00032 1.1E-08 89.3 2.4 36 423-460 662-697 (918)
136 3nwj_A ATSK2; P loop, shikimat 96.8 0.00016 5.5E-09 79.0 -0.4 39 421-461 32-73 (250)
137 1wb9_A DNA mismatch repair pro 96.8 0.00045 1.5E-08 87.0 3.5 35 424-461 598-632 (800)
138 3tqc_A Pantothenate kinase; bi 96.8 0.00049 1.7E-08 77.9 3.3 27 436-462 92-118 (321)
139 1n0w_A DNA repair protein RAD5 96.8 0.00055 1.9E-08 72.2 3.1 27 433-459 21-47 (243)
140 1nij_A Hypothetical protein YJ 96.7 0.00059 2E-08 76.7 3.3 24 437-460 5-28 (318)
141 1ewq_A DNA mismatch repair pro 96.7 0.00055 1.9E-08 85.8 3.2 26 436-461 576-601 (765)
142 2cvh_A DNA repair and recombin 96.7 0.00081 2.8E-08 69.8 3.9 26 433-458 17-42 (220)
143 2qag_C Septin-7; cell cycle, c 96.7 0.00083 2.8E-08 78.7 4.0 37 422-466 25-61 (418)
144 2x8a_A Nuclear valosin-contain 96.6 0.00069 2.4E-08 74.6 2.9 35 423-461 35-69 (274)
145 1w1w_A Structural maintenance 96.6 0.00093 3.2E-08 77.9 4.0 30 433-462 23-52 (430)
146 1cke_A CK, MSSA, protein (cyti 96.6 0.00076 2.6E-08 70.7 2.9 25 436-460 5-29 (227)
147 3thx_A DNA mismatch repair pro 96.6 0.00087 3E-08 85.6 3.5 30 426-457 654-683 (934)
148 2qnr_A Septin-2, protein NEDD5 96.6 0.00066 2.3E-08 75.8 2.2 32 422-461 12-44 (301)
149 3cr8_A Sulfate adenylyltranfer 96.6 0.00055 1.9E-08 82.8 1.5 30 433-462 366-395 (552)
150 2o8b_B DNA mismatch repair pro 96.5 0.00098 3.3E-08 86.0 3.6 37 422-461 770-813 (1022)
151 2qor_A Guanylate kinase; phosp 96.5 0.0011 3.7E-08 69.1 3.1 29 433-461 9-37 (204)
152 2pez_A Bifunctional 3'-phospho 96.5 0.001 3.6E-08 67.5 2.9 28 434-461 3-30 (179)
153 1nlf_A Regulatory protein REPA 96.5 0.0011 3.9E-08 72.4 3.1 29 433-461 27-55 (279)
154 1jjv_A Dephospho-COA kinase; P 96.4 0.0014 4.8E-08 67.9 3.5 22 438-459 4-25 (206)
155 1oix_A RAS-related protein RAB 96.4 0.0015 5.2E-08 67.0 3.6 24 438-461 31-54 (191)
156 2o5v_A DNA replication and rep 96.4 0.0013 4.3E-08 75.7 3.3 35 424-461 17-51 (359)
157 1ni3_A YCHF GTPase, YCHF GTP-b 96.4 0.0015 5.2E-08 75.8 3.9 26 433-458 17-42 (392)
158 2vf7_A UVRA2, excinuclease ABC 96.4 0.0004 1.4E-08 87.8 -1.2 37 423-461 512-549 (842)
159 1ixz_A ATP-dependent metallopr 96.4 0.0014 4.9E-08 70.2 3.2 35 423-461 40-74 (254)
160 1iy2_A ATP-dependent metallopr 96.3 0.0014 4.9E-08 71.5 3.0 35 423-461 64-98 (278)
161 1odf_A YGR205W, hypothetical 3 96.3 0.0014 4.9E-08 73.0 3.0 29 434-462 29-57 (290)
162 1udx_A The GTP-binding protein 96.3 0.00096 3.3E-08 78.1 1.5 35 425-461 148-182 (416)
163 2f9l_A RAB11B, member RAS onco 96.3 0.0019 6.4E-08 66.4 3.4 24 438-461 7-30 (199)
164 1vma_A Cell division protein F 96.3 0.0019 6.6E-08 72.5 3.5 30 433-462 101-130 (306)
165 2px0_A Flagellar biosynthesis 96.2 0.0017 5.7E-08 72.6 2.9 29 434-462 103-131 (296)
166 2ygr_A Uvrabc system protein A 96.2 0.0011 3.7E-08 84.7 1.3 33 423-457 657-689 (993)
167 2if2_A Dephospho-COA kinase; a 96.2 0.0022 7.5E-08 66.3 3.3 21 438-458 3-23 (204)
168 2yvu_A Probable adenylyl-sulfa 96.2 0.0023 8E-08 65.3 3.4 32 430-461 7-38 (186)
169 3pih_A Uvrabc system protein A 96.1 0.0026 8.8E-08 81.1 4.0 30 422-453 598-627 (916)
170 2r6f_A Excinuclease ABC subuni 96.1 0.001 3.5E-08 84.7 0.2 34 422-457 638-671 (972)
171 3qf7_A RAD50; ABC-ATPase, ATPa 96.1 0.0017 5.7E-08 74.5 1.9 28 433-461 21-48 (365)
172 1zu4_A FTSY; GTPase, signal re 96.0 0.0028 9.7E-08 71.5 3.5 31 432-462 101-131 (320)
173 1e69_A Chromosome segregation 96.0 0.0027 9.1E-08 71.3 3.2 28 433-461 22-49 (322)
174 2gj8_A MNME, tRNA modification 96.0 0.0032 1.1E-07 63.5 3.4 28 434-461 2-29 (172)
175 2www_A Methylmalonic aciduria 96.0 0.0024 8.3E-08 72.8 2.8 28 434-461 72-99 (349)
176 1m7g_A Adenylylsulfate kinase; 95.9 0.0032 1.1E-07 65.9 3.1 29 433-461 22-50 (211)
177 1tf7_A KAIC; homohexamer, hexa 95.9 0.0028 9.5E-08 76.0 2.8 31 432-462 277-307 (525)
178 1f2t_A RAD50 ABC-ATPase; DNA d 95.9 0.004 1.4E-07 62.4 3.5 25 436-460 23-47 (149)
179 3lda_A DNA repair protein RAD5 95.9 0.0035 1.2E-07 73.0 3.5 30 433-462 175-206 (400)
180 1in4_A RUVB, holliday junction 95.9 0.0029 1E-07 71.2 2.7 25 437-461 52-76 (334)
181 4eaq_A DTMP kinase, thymidylat 95.8 0.004 1.4E-07 66.7 3.5 36 426-461 15-51 (229)
182 3t61_A Gluconokinase; PSI-biol 95.8 0.0032 1.1E-07 65.1 2.7 25 436-460 18-42 (202)
183 3kb2_A SPBC2 prophage-derived 95.8 0.0038 1.3E-07 62.1 2.7 24 438-461 3-26 (173)
184 2wji_A Ferrous iron transport 95.8 0.0047 1.6E-07 61.4 3.4 24 438-461 5-28 (165)
185 3cm0_A Adenylate kinase; ATP-b 95.6 0.0048 1.7E-07 62.5 3.0 25 435-459 3-27 (186)
186 1qhx_A CPT, protein (chloramph 95.6 0.0059 2E-07 61.4 3.6 26 436-461 3-28 (178)
187 1ls1_A Signal recognition part 95.6 0.0044 1.5E-07 69.1 2.8 28 435-462 97-124 (295)
188 3lw7_A Adenylate kinase relate 95.4 0.0068 2.3E-07 59.8 3.2 19 438-456 3-21 (179)
189 2dr3_A UPF0273 protein PH0284; 95.4 0.0063 2.2E-07 64.0 3.0 29 433-461 20-49 (247)
190 3t34_A Dynamin-related protein 95.4 0.011 3.8E-07 67.1 5.2 34 423-461 26-61 (360)
191 1kht_A Adenylate kinase; phosp 95.4 0.0079 2.7E-07 60.8 3.6 26 436-461 3-28 (192)
192 2rhm_A Putative kinase; P-loop 95.4 0.0083 2.8E-07 60.9 3.7 27 434-460 3-29 (193)
193 1y63_A LMAJ004144AAA protein; 95.4 0.0095 3.2E-07 61.0 4.1 27 433-459 7-33 (184)
194 2zej_A Dardarin, leucine-rich 95.4 0.0065 2.2E-07 61.5 2.8 23 438-460 4-26 (184)
195 2wjg_A FEOB, ferrous iron tran 95.4 0.008 2.7E-07 60.4 3.4 23 438-460 9-31 (188)
196 1sxj_E Activator 1 40 kDa subu 95.3 0.0078 2.7E-07 67.3 3.6 32 439-472 39-71 (354)
197 1q3t_A Cytidylate kinase; nucl 95.3 0.009 3.1E-07 63.6 3.9 28 433-460 13-40 (236)
198 1np6_A Molybdopterin-guanine d 95.3 0.007 2.4E-07 62.6 2.7 25 437-461 7-31 (174)
199 2p67_A LAO/AO transport system 95.2 0.0075 2.6E-07 68.4 3.0 29 433-461 53-81 (341)
200 2v54_A DTMP kinase, thymidylat 95.2 0.012 4E-07 60.4 4.0 26 435-460 3-28 (204)
201 2jaq_A Deoxyguanosine kinase; 95.2 0.0094 3.2E-07 60.9 3.3 24 438-461 2-25 (205)
202 1ex7_A Guanylate kinase; subst 95.2 0.0088 3E-07 62.6 3.1 23 439-461 4-26 (186)
203 1gtv_A TMK, thymidylate kinase 95.1 0.0041 1.4E-07 64.4 0.5 24 438-461 2-25 (214)
204 1ega_A Protein (GTP-binding pr 95.1 0.0079 2.7E-07 67.0 2.5 26 435-460 7-32 (301)
205 3iij_A Coilin-interacting nucl 95.1 0.012 4.2E-07 59.5 3.7 28 433-460 8-35 (180)
206 2p5t_B PEZT; postsegregational 95.0 0.008 2.7E-07 65.0 2.4 29 433-461 29-57 (253)
207 3ice_A Transcription terminati 95.0 0.0056 1.9E-07 71.1 1.1 37 425-461 163-199 (422)
208 3qks_A DNA double-strand break 95.0 0.012 3.9E-07 61.9 3.5 26 436-461 23-48 (203)
209 1vht_A Dephospho-COA kinase; s 95.0 0.012 4.2E-07 61.5 3.7 23 436-458 4-26 (218)
210 1ly1_A Polynucleotide kinase; 95.0 0.012 4E-07 58.9 3.4 22 437-458 3-24 (181)
211 2c95_A Adenylate kinase 1; tra 94.9 0.014 4.9E-07 59.3 3.7 27 434-460 7-33 (196)
212 3r20_A Cytidylate kinase; stru 94.9 0.01 3.5E-07 64.3 2.7 25 436-460 9-33 (233)
213 3trf_A Shikimate kinase, SK; a 94.9 0.014 4.8E-07 59.1 3.6 26 435-460 4-29 (185)
214 2plr_A DTMP kinase, probable t 94.9 0.014 4.6E-07 60.0 3.5 27 435-461 3-29 (213)
215 1uf9_A TT1252 protein; P-loop, 94.9 0.014 4.8E-07 59.7 3.6 25 435-459 7-31 (203)
216 3qkt_A DNA double-strand break 94.8 0.013 4.3E-07 66.3 3.5 23 436-458 23-45 (339)
217 3m6a_A ATP-dependent protease 94.8 0.012 4E-07 71.1 3.1 27 435-461 107-133 (543)
218 1nn5_A Similar to deoxythymidy 94.8 0.017 5.7E-07 59.7 3.9 28 434-461 7-34 (215)
219 1nks_A Adenylate kinase; therm 94.8 0.014 4.9E-07 58.9 3.3 24 438-461 3-26 (194)
220 2wwf_A Thymidilate kinase, put 94.7 0.016 5.3E-07 59.9 3.6 28 434-461 8-35 (212)
221 3lxx_A GTPase IMAP family memb 94.7 0.014 4.9E-07 61.9 3.1 24 438-461 31-54 (239)
222 1via_A Shikimate kinase; struc 94.5 0.014 4.9E-07 58.8 2.7 24 438-461 6-29 (175)
223 1tev_A UMP-CMP kinase; ploop, 94.5 0.018 6.2E-07 58.2 3.4 25 436-460 3-27 (196)
224 3k1j_A LON protease, ATP-depen 94.5 0.014 4.7E-07 71.2 2.8 36 425-462 51-86 (604)
225 2ze6_A Isopentenyl transferase 94.5 0.017 6E-07 62.5 3.3 24 438-461 3-26 (253)
226 1gvn_B Zeta; postsegregational 94.5 0.017 5.8E-07 64.0 3.2 28 433-460 30-57 (287)
227 2z0h_A DTMP kinase, thymidylat 94.4 0.02 6.8E-07 58.3 3.4 23 438-460 2-24 (197)
228 2bwj_A Adenylate kinase 5; pho 94.3 0.022 7.5E-07 58.1 3.5 26 435-460 11-36 (199)
229 3ake_A Cytidylate kinase; CMP 94.3 0.018 6.3E-07 59.0 2.8 23 438-460 4-26 (208)
230 2ged_A SR-beta, signal recogni 94.2 0.021 7E-07 57.7 3.0 26 436-461 48-73 (193)
231 3hr8_A Protein RECA; alpha and 94.2 0.018 6.1E-07 66.1 2.8 29 433-461 58-86 (356)
232 2nzj_A GTP-binding protein REM 94.2 0.022 7.5E-07 56.1 3.1 24 438-461 6-29 (175)
233 3k53_A Ferrous iron transport 94.2 0.021 7.2E-07 62.1 3.3 24 438-461 5-28 (271)
234 1z2a_A RAS-related protein RAB 94.2 0.022 7.5E-07 55.6 3.1 23 438-460 7-29 (168)
235 1aky_A Adenylate kinase; ATP:A 94.2 0.026 8.9E-07 59.1 3.8 27 434-460 2-28 (220)
236 1mky_A Probable GTP-binding pr 94.2 0.02 7E-07 66.9 3.2 25 437-461 181-205 (439)
237 1kao_A RAP2A; GTP-binding prot 94.2 0.023 7.8E-07 55.2 3.0 23 438-460 5-27 (167)
238 2ce2_X GTPase HRAS; signaling 94.1 0.023 7.8E-07 55.0 3.0 23 438-460 5-27 (166)
239 2vli_A Antibiotic resistance p 94.1 0.019 6.4E-07 57.9 2.4 27 435-461 4-30 (183)
240 3q72_A GTP-binding protein RAD 94.1 0.02 6.8E-07 56.0 2.6 24 438-461 4-27 (166)
241 2ga8_A Hypothetical 39.9 kDa p 94.1 0.019 6.5E-07 65.9 2.8 29 433-461 19-49 (359)
242 2qtf_A Protein HFLX, GTP-bindi 94.1 0.023 7.7E-07 65.3 3.4 24 438-461 181-204 (364)
243 2erx_A GTP-binding protein DI- 94.1 0.024 8.3E-07 55.4 3.1 23 438-460 5-27 (172)
244 1zd8_A GTP:AMP phosphotransfer 94.1 0.026 9E-07 59.5 3.6 27 434-460 5-31 (227)
245 1xjc_A MOBB protein homolog; s 94.0 0.021 7.3E-07 58.9 2.7 25 437-461 5-29 (169)
246 1u8z_A RAS-related protein RAL 94.0 0.025 8.5E-07 54.9 3.1 23 438-460 6-28 (168)
247 1g16_A RAS-related protein SEC 94.0 0.025 8.4E-07 55.3 3.0 23 438-460 5-27 (170)
248 2dhr_A FTSH; AAA+ protein, hex 94.0 0.026 8.9E-07 67.5 3.7 34 424-461 56-89 (499)
249 2pbr_A DTMP kinase, thymidylat 94.0 0.027 9.2E-07 57.0 3.4 23 438-460 2-24 (195)
250 3q85_A GTP-binding protein REM 94.0 0.026 9E-07 55.3 3.2 24 438-461 4-27 (169)
251 2cdn_A Adenylate kinase; phosp 94.0 0.031 1.1E-06 57.6 3.9 27 434-460 18-44 (201)
252 3fb4_A Adenylate kinase; psych 94.0 0.027 9.2E-07 58.6 3.4 23 438-460 2-24 (216)
253 1z0j_A RAB-22, RAS-related pro 94.0 0.026 8.9E-07 55.2 3.0 23 438-460 8-30 (170)
254 3t1o_A Gliding protein MGLA; G 94.0 0.028 9.7E-07 56.3 3.4 24 438-461 16-39 (198)
255 2lkc_A Translation initiation 94.0 0.038 1.3E-06 54.6 4.3 27 434-460 6-32 (178)
256 2dyk_A GTP-binding protein; GT 93.9 0.026 9E-07 54.7 3.0 23 438-460 3-25 (161)
257 1zak_A Adenylate kinase; ATP:A 93.9 0.026 9E-07 59.2 3.2 27 435-461 4-30 (222)
258 3cf0_A Transitional endoplasmi 93.9 0.03 1E-06 62.0 3.8 29 433-461 46-74 (301)
259 1qf9_A UMP/CMP kinase, protein 93.9 0.028 9.7E-07 56.6 3.3 25 436-460 6-30 (194)
260 1ek0_A Protein (GTP-binding pr 93.9 0.027 9.3E-07 54.9 3.1 24 438-461 5-28 (170)
261 1wms_A RAB-9, RAB9, RAS-relate 93.9 0.027 9.3E-07 55.6 3.0 23 438-460 9-31 (177)
262 1c1y_A RAS-related protein RAP 93.9 0.028 9.5E-07 54.8 3.1 23 438-460 5-27 (167)
263 1svi_A GTP-binding protein YSX 93.9 0.027 9.2E-07 56.8 3.0 24 437-460 24-47 (195)
264 4ad8_A DNA repair protein RECN 93.8 0.014 4.8E-07 69.8 1.0 28 433-461 58-85 (517)
265 1z08_A RAS-related protein RAB 93.8 0.028 9.5E-07 55.1 3.0 23 438-460 8-30 (170)
266 1ky3_A GTP-binding protein YPT 93.8 0.028 9.6E-07 55.6 3.0 23 438-460 10-32 (182)
267 1lv7_A FTSH; alpha/beta domain 93.8 0.033 1.1E-06 59.7 3.8 24 438-461 47-70 (257)
268 3tw8_B RAS-related protein RAB 93.8 0.024 8.4E-07 55.9 2.6 23 438-460 11-33 (181)
269 2ohf_A Protein OLA1, GTP-bindi 93.8 0.028 9.4E-07 65.4 3.3 27 433-459 19-45 (396)
270 1ukz_A Uridylate kinase; trans 93.8 0.034 1.2E-06 57.2 3.7 26 435-460 14-39 (203)
271 2fn4_A P23, RAS-related protei 93.8 0.029 9.8E-07 55.5 3.0 23 438-460 11-33 (181)
272 3dl0_A Adenylate kinase; phosp 93.8 0.031 1.1E-06 58.2 3.4 23 438-460 2-24 (216)
273 3clv_A RAB5 protein, putative; 93.8 0.029 9.9E-07 56.2 3.0 24 438-461 9-32 (208)
274 1sxj_C Activator 1 40 kDa subu 93.7 0.018 6E-07 64.7 1.5 29 433-461 41-71 (340)
275 1e6c_A Shikimate kinase; phosp 93.7 0.027 9.3E-07 56.1 2.8 23 438-460 4-26 (173)
276 3pqc_A Probable GTP-binding pr 93.7 0.029 1E-06 56.2 3.0 23 438-460 25-47 (195)
277 1zuh_A Shikimate kinase; alpha 93.7 0.035 1.2E-06 55.5 3.5 24 437-460 8-31 (168)
278 1r2q_A RAS-related protein RAB 93.7 0.032 1.1E-06 54.4 3.1 23 438-460 8-30 (170)
279 2cxx_A Probable GTP-binding pr 93.7 0.031 1E-06 55.9 3.0 23 438-460 3-25 (190)
280 4dsu_A GTPase KRAS, isoform 2B 93.6 0.032 1.1E-06 55.7 3.0 23 438-460 6-28 (189)
281 2ffh_A Protein (FFH); SRP54, s 93.6 0.033 1.1E-06 65.3 3.6 28 435-462 97-124 (425)
282 1j8m_F SRP54, signal recogniti 93.6 0.029 9.8E-07 62.7 2.9 29 433-462 96-124 (297)
283 2pt5_A Shikimate kinase, SK; a 93.6 0.036 1.2E-06 55.0 3.3 23 438-460 2-24 (168)
284 3bc1_A RAS-related protein RAB 93.6 0.033 1.1E-06 55.6 3.1 23 438-460 13-35 (195)
285 1ypw_A Transitional endoplasmi 93.6 0.034 1.2E-06 70.1 3.9 29 433-461 235-263 (806)
286 1fzq_A ADP-ribosylation factor 93.5 0.029 9.9E-07 56.7 2.6 24 437-460 17-40 (181)
287 2hxs_A RAB-26, RAS-related pro 93.5 0.036 1.2E-06 54.8 3.2 23 438-460 8-30 (178)
288 2oil_A CATX-8, RAS-related pro 93.5 0.035 1.2E-06 56.1 3.1 24 438-461 27-50 (193)
289 1upt_A ARL1, ADP-ribosylation 93.4 0.037 1.3E-06 54.3 3.1 25 436-460 7-31 (171)
290 2y8e_A RAB-protein 6, GH09086P 93.4 0.036 1.2E-06 54.6 3.0 23 438-460 16-38 (179)
291 1r8s_A ADP-ribosylation factor 93.4 0.037 1.3E-06 53.9 3.1 22 439-460 3-24 (164)
292 3iev_A GTP-binding protein ERA 93.4 0.031 1E-06 62.4 2.7 27 434-460 8-34 (308)
293 3lxw_A GTPase IMAP family memb 93.4 0.036 1.2E-06 59.7 3.2 25 437-461 22-46 (247)
294 2iyv_A Shikimate kinase, SK; t 93.4 0.035 1.2E-06 56.2 2.8 24 437-460 3-26 (184)
295 3b1v_A Ferrous iron uptake tra 93.3 0.039 1.3E-06 60.7 3.4 23 438-460 5-27 (272)
296 3bos_A Putative DNA replicatio 93.3 0.047 1.6E-06 56.7 3.8 27 435-461 51-77 (242)
297 2g6b_A RAS-related protein RAB 93.3 0.039 1.3E-06 54.6 3.1 24 438-461 12-35 (180)
298 3a4m_A L-seryl-tRNA(SEC) kinas 93.3 0.042 1.4E-06 59.6 3.5 26 435-460 3-28 (260)
299 1f6b_A SAR1; gtpases, N-termin 93.3 0.03 1E-06 57.6 2.2 26 433-459 23-48 (198)
300 3tlx_A Adenylate kinase 2; str 93.3 0.045 1.5E-06 58.8 3.6 26 435-460 28-53 (243)
301 2a9k_A RAS-related protein RAL 93.2 0.041 1.4E-06 54.6 3.1 23 438-460 20-42 (187)
302 1moz_A ARL1, ADP-ribosylation 93.2 0.028 9.6E-07 56.0 1.9 23 436-458 18-40 (183)
303 1m2o_B GTP-binding protein SAR 93.2 0.04 1.4E-06 56.2 3.0 25 436-460 23-47 (190)
304 1z0f_A RAB14, member RAS oncog 93.2 0.041 1.4E-06 54.2 3.1 24 438-461 17-40 (179)
305 2qag_A Septin-2, protein NEDD5 93.1 0.04 1.4E-06 63.0 3.2 23 439-461 40-62 (361)
306 3con_A GTPase NRAS; structural 93.1 0.043 1.5E-06 55.2 3.1 23 438-460 23-45 (190)
307 2efe_B Small GTP-binding prote 93.1 0.043 1.5E-06 54.4 3.0 24 438-461 14-37 (181)
308 2bme_A RAB4A, RAS-related prot 93.1 0.043 1.5E-06 54.8 3.0 23 438-460 12-34 (186)
309 1uj2_A Uridine-cytidine kinase 93.1 0.043 1.5E-06 59.0 3.2 26 436-461 22-47 (252)
310 2bov_A RAla, RAS-related prote 93.1 0.044 1.5E-06 55.7 3.1 23 438-460 16-38 (206)
311 1jbk_A CLPB protein; beta barr 93.0 0.057 1.9E-06 53.5 3.7 27 435-461 42-68 (195)
312 2gf0_A GTP-binding protein DI- 93.0 0.045 1.5E-06 55.3 3.0 24 437-460 9-32 (199)
313 2xb4_A Adenylate kinase; ATP-b 93.0 0.048 1.6E-06 57.6 3.3 23 438-460 2-24 (223)
314 1nrj_B SR-beta, signal recogni 92.9 0.046 1.6E-06 56.5 3.1 25 437-461 13-37 (218)
315 1vg8_A RAS-related protein RAB 92.9 0.047 1.6E-06 55.6 3.0 23 438-460 10-32 (207)
316 3tkl_A RAS-related protein RAB 92.9 0.047 1.6E-06 54.9 3.1 23 438-460 18-40 (196)
317 3b9p_A CG5977-PA, isoform A; A 92.9 0.055 1.9E-06 59.0 3.8 28 434-461 52-79 (297)
318 2gf9_A RAS-related protein RAB 92.9 0.049 1.7E-06 55.0 3.1 23 438-460 24-46 (189)
319 2dy1_A Elongation factor G; tr 92.9 0.06 2E-06 66.5 4.4 30 433-462 6-35 (665)
320 1wf3_A GTP-binding protein; GT 92.9 0.05 1.7E-06 60.7 3.4 23 438-460 9-31 (301)
321 1mh1_A RAC1; GTP-binding, GTPa 92.9 0.049 1.7E-06 54.1 3.1 23 438-460 7-29 (186)
322 1m7b_A RND3/RHOE small GTP-bin 92.9 0.049 1.7E-06 54.8 3.0 23 438-460 9-31 (184)
323 3be4_A Adenylate kinase; malar 92.8 0.053 1.8E-06 56.9 3.4 26 435-460 4-29 (217)
324 2zr9_A Protein RECA, recombina 92.8 0.046 1.6E-06 62.4 3.1 29 433-461 58-86 (349)
325 2qby_A CDC6 homolog 1, cell di 92.8 0.049 1.7E-06 60.7 3.2 28 434-461 43-70 (386)
326 2fg5_A RAB-22B, RAS-related pr 92.8 0.05 1.7E-06 55.2 3.0 23 438-460 25-47 (192)
327 3kkq_A RAS-related protein M-R 92.7 0.053 1.8E-06 54.1 3.1 23 438-460 20-42 (183)
328 3cbq_A GTP-binding protein REM 92.7 0.041 1.4E-06 56.5 2.3 23 438-460 25-47 (195)
329 3ihw_A Centg3; RAS, centaurin, 92.7 0.052 1.8E-06 55.1 3.0 22 438-459 22-43 (184)
330 3oes_A GTPase rhebl1; small GT 92.7 0.051 1.8E-06 55.6 3.0 24 438-461 26-49 (201)
331 2e87_A Hypothetical protein PH 92.7 0.051 1.8E-06 61.7 3.3 27 435-461 166-192 (357)
332 1zbd_A Rabphilin-3A; G protein 92.7 0.055 1.9E-06 55.1 3.2 23 438-460 10-32 (203)
333 3iby_A Ferrous iron transport 92.7 0.055 1.9E-06 58.8 3.4 23 438-460 3-25 (256)
334 2grj_A Dephospho-COA kinase; T 92.7 0.057 2E-06 56.4 3.4 24 436-459 12-35 (192)
335 1e4v_A Adenylate kinase; trans 92.7 0.056 1.9E-06 56.4 3.3 23 438-460 2-24 (214)
336 3t5g_A GTP-binding protein RHE 92.7 0.054 1.8E-06 53.9 3.0 22 438-459 8-29 (181)
337 1ksh_A ARF-like protein 2; sma 92.6 0.051 1.8E-06 54.4 2.8 25 436-460 18-42 (186)
338 3t5d_A Septin-7; GTP-binding p 92.6 0.045 1.5E-06 59.7 2.6 23 438-460 10-32 (274)
339 4fcw_A Chaperone protein CLPB; 92.6 0.049 1.7E-06 59.5 2.9 28 434-461 45-72 (311)
340 2wsm_A Hydrogenase expression/ 92.6 0.056 1.9E-06 56.0 3.2 23 438-460 32-54 (221)
341 3kl4_A SRP54, signal recogniti 92.6 0.04 1.4E-06 64.8 2.3 28 434-461 95-122 (433)
342 3llu_A RAS-related GTP-binding 92.6 0.061 2.1E-06 54.9 3.4 25 438-462 22-46 (196)
343 3dz8_A RAS-related protein RAB 92.6 0.055 1.9E-06 54.8 3.0 23 438-460 25-47 (191)
344 3llm_A ATP-dependent RNA helic 92.6 0.064 2.2E-06 57.0 3.6 26 433-458 73-98 (235)
345 3bwd_D RAC-like GTP-binding pr 92.6 0.057 2E-06 53.5 3.1 24 437-460 9-32 (182)
346 2cjw_A GTP-binding protein GEM 92.6 0.056 1.9E-06 55.4 3.1 22 438-459 8-29 (192)
347 2f6r_A COA synthase, bifunctio 92.6 0.061 2.1E-06 59.2 3.6 24 435-458 74-97 (281)
348 2xtp_A GTPase IMAP family memb 92.5 0.055 1.9E-06 58.0 3.1 24 437-460 23-46 (260)
349 2bcg_Y Protein YP2, GTP-bindin 92.5 0.057 1.9E-06 55.3 3.0 23 438-460 10-32 (206)
350 1z06_A RAS-related protein RAB 92.5 0.059 2E-06 54.4 3.0 23 438-460 22-44 (189)
351 1x3s_A RAS-related protein RAB 92.5 0.06 2.1E-06 54.0 3.1 23 438-460 17-39 (195)
352 3cph_A RAS-related protein SEC 92.4 0.06 2E-06 55.1 3.1 24 437-460 21-44 (213)
353 1fnn_A CDC6P, cell division co 92.4 0.067 2.3E-06 60.0 3.7 27 435-461 41-69 (389)
354 2a5j_A RAS-related protein RAB 92.4 0.061 2.1E-06 54.5 3.1 23 438-460 23-45 (191)
355 1zj6_A ADP-ribosylation factor 92.4 0.062 2.1E-06 54.1 3.1 23 437-459 17-39 (187)
356 1jwy_B Dynamin A GTPase domain 92.4 0.061 2.1E-06 59.2 3.3 23 438-460 26-48 (315)
357 2w58_A DNAI, primosome compone 92.4 0.07 2.4E-06 54.8 3.6 25 437-461 55-79 (202)
358 1ak2_A Adenylate kinase isoenz 92.4 0.076 2.6E-06 56.3 3.9 27 434-460 14-40 (233)
359 3umf_A Adenylate kinase; rossm 92.4 0.072 2.5E-06 56.9 3.7 29 433-461 26-54 (217)
360 1zd9_A ADP-ribosylation factor 92.4 0.062 2.1E-06 54.3 3.1 23 438-460 24-46 (188)
361 2o52_A RAS-related protein RAB 92.4 0.063 2.1E-06 55.1 3.1 23 438-460 27-49 (200)
362 3reg_A RHO-like small GTPase; 92.3 0.063 2.2E-06 54.4 3.1 24 438-461 25-48 (194)
363 3auy_A DNA double-strand break 92.3 0.064 2.2E-06 61.3 3.4 23 436-458 25-47 (371)
364 2h57_A ADP-ribosylation factor 92.3 0.05 1.7E-06 54.9 2.3 24 437-460 22-45 (190)
365 2dby_A GTP-binding protein; GD 92.3 0.057 2E-06 62.1 3.0 22 439-460 4-25 (368)
366 2h17_A ADP-ribosylation factor 92.3 0.059 2E-06 54.1 2.7 24 437-460 22-45 (181)
367 2p5s_A RAS and EF-hand domain 92.3 0.065 2.2E-06 54.7 3.1 24 437-460 29-52 (199)
368 2atv_A RERG, RAS-like estrogen 92.2 0.065 2.2E-06 54.5 3.0 24 437-460 29-52 (196)
369 4bas_A ADP-ribosylation factor 92.2 0.058 2E-06 54.4 2.6 25 437-461 18-42 (199)
370 2qu8_A Putative nucleolar GTP- 92.2 0.06 2.1E-06 56.4 2.8 25 436-460 29-53 (228)
371 2il1_A RAB12; G-protein, GDP, 92.2 0.059 2E-06 54.8 2.6 23 438-460 28-50 (192)
372 1a7j_A Phosphoribulokinase; tr 92.2 0.045 1.5E-06 60.8 1.9 27 435-461 4-30 (290)
373 1v5w_A DMC1, meiotic recombina 92.2 0.072 2.5E-06 60.4 3.6 27 433-459 119-145 (343)
374 1ltq_A Polynucleotide kinase; 92.1 0.07 2.4E-06 58.4 3.4 23 437-459 3-25 (301)
375 2ew1_A RAS-related protein RAB 92.1 0.067 2.3E-06 55.4 3.0 23 438-460 28-50 (201)
376 2iwr_A Centaurin gamma 1; ANK 92.1 0.053 1.8E-06 53.8 2.1 23 438-460 9-31 (178)
377 4dhe_A Probable GTP-binding pr 92.1 0.035 1.2E-06 57.4 0.8 24 437-460 30-53 (223)
378 2r6a_A DNAB helicase, replicat 92.1 0.078 2.7E-06 62.3 3.8 29 433-461 200-228 (454)
379 3a1s_A Iron(II) transport prot 92.0 0.07 2.4E-06 58.0 3.1 24 438-461 7-30 (258)
380 2h92_A Cytidylate kinase; ross 92.0 0.066 2.3E-06 55.7 2.9 25 436-460 3-27 (219)
381 2q3h_A RAS homolog gene family 92.0 0.074 2.5E-06 54.1 3.2 24 437-460 21-44 (201)
382 2f7s_A C25KG, RAS-related prot 92.0 0.073 2.5E-06 54.9 3.1 23 438-460 27-49 (217)
383 2fv8_A H6, RHO-related GTP-bin 92.0 0.07 2.4E-06 54.9 3.0 23 438-460 27-49 (207)
384 3h4m_A Proteasome-activating n 92.0 0.089 3.1E-06 56.9 3.9 28 434-461 49-76 (285)
385 3i8s_A Ferrous iron transport 91.9 0.076 2.6E-06 58.1 3.3 23 438-460 5-27 (274)
386 3zvl_A Bifunctional polynucleo 91.9 0.08 2.7E-06 61.6 3.7 27 434-460 256-282 (416)
387 4edh_A DTMP kinase, thymidylat 91.9 0.085 2.9E-06 56.0 3.6 27 435-461 5-31 (213)
388 2p65_A Hypothetical protein PF 91.9 0.072 2.5E-06 52.8 2.8 26 436-461 43-68 (187)
389 3c5c_A RAS-like protein 12; GD 91.9 0.076 2.6E-06 53.8 3.0 23 438-460 23-45 (187)
390 2aka_B Dynamin-1; fusion prote 91.9 0.071 2.4E-06 58.0 3.0 24 438-461 28-51 (299)
391 1gwn_A RHO-related GTP-binding 91.9 0.075 2.6E-06 55.1 3.0 24 438-461 30-53 (205)
392 2j1l_A RHO-related GTP-binding 91.8 0.078 2.7E-06 55.0 3.1 23 438-460 36-58 (214)
393 2fh5_B SR-beta, signal recogni 91.8 0.079 2.7E-06 54.5 3.1 24 437-460 8-31 (214)
394 1njg_A DNA polymerase III subu 91.8 0.097 3.3E-06 53.6 3.7 25 437-461 46-70 (250)
395 2fu5_C RAS-related protein RAB 91.7 0.052 1.8E-06 54.1 1.6 23 438-460 10-32 (183)
396 3a8t_A Adenylate isopentenyltr 91.7 0.1 3.4E-06 59.6 4.1 27 435-461 39-65 (339)
397 3d3q_A TRNA delta(2)-isopenten 91.6 0.083 2.9E-06 60.3 3.3 25 437-461 8-32 (340)
398 3lv8_A DTMP kinase, thymidylat 91.6 0.098 3.4E-06 56.6 3.7 27 435-461 26-52 (236)
399 2gco_A H9, RHO-related GTP-bin 91.6 0.083 2.8E-06 54.1 3.0 23 438-460 27-49 (201)
400 4ag6_A VIRB4 ATPase, type IV s 91.6 0.079 2.7E-06 60.7 3.1 27 435-461 34-60 (392)
401 1jal_A YCHF protein; nucleotid 91.6 0.09 3.1E-06 60.5 3.5 25 436-460 2-26 (363)
402 2atx_A Small GTP binding prote 91.5 0.088 3E-06 53.2 3.0 23 438-460 20-42 (194)
403 3sr0_A Adenylate kinase; phosp 91.5 0.096 3.3E-06 55.4 3.4 24 438-461 2-25 (206)
404 2b6h_A ADP-ribosylation factor 91.5 0.077 2.6E-06 54.1 2.6 25 435-459 28-52 (192)
405 3v9p_A DTMP kinase, thymidylat 91.5 0.087 3E-06 56.7 3.0 28 434-461 23-50 (227)
406 2hf9_A Probable hydrogenase ni 91.3 0.099 3.4E-06 54.3 3.3 24 437-460 39-62 (226)
407 4tmk_A Protein (thymidylate ki 91.3 0.11 3.8E-06 55.2 3.7 27 435-461 2-28 (213)
408 1p5z_B DCK, deoxycytidine kina 91.3 0.076 2.6E-06 57.4 2.4 28 434-461 22-49 (263)
409 1l8q_A Chromosomal replication 91.3 0.087 3E-06 58.4 2.9 27 435-461 36-62 (324)
410 2ocp_A DGK, deoxyguanosine kin 91.3 0.1 3.5E-06 55.5 3.3 26 436-461 2-27 (241)
411 2qz4_A Paraplegin; AAA+, SPG7, 91.2 0.12 4.2E-06 54.8 3.9 27 434-460 37-63 (262)
412 3tmk_A Thymidylate kinase; pho 91.1 0.12 4.2E-06 55.1 3.8 28 434-461 3-30 (216)
413 3def_A T7I23.11 protein; chlor 91.1 0.098 3.4E-06 56.6 3.1 23 438-460 38-60 (262)
414 1h65_A Chloroplast outer envel 91.1 0.11 3.7E-06 56.5 3.4 23 438-460 41-63 (270)
415 4djt_A GTP-binding nuclear pro 91.0 0.052 1.8E-06 56.0 0.7 23 438-460 13-35 (218)
416 2z43_A DNA repair and recombin 90.9 0.1 3.6E-06 58.4 3.1 28 433-460 104-131 (324)
417 3cpj_B GTP-binding protein YPT 90.9 0.11 3.7E-06 54.2 3.0 23 438-460 15-37 (223)
418 2hup_A RAS-related protein RAB 90.9 0.11 3.7E-06 53.4 3.0 23 438-460 31-53 (201)
419 2x77_A ADP-ribosylation factor 90.9 0.078 2.7E-06 53.3 1.9 23 436-458 22-44 (189)
420 2g3y_A GTP-binding protein GEM 90.8 0.11 3.9E-06 54.7 3.1 23 438-460 39-61 (211)
421 3crm_A TRNA delta(2)-isopenten 90.8 0.11 3.9E-06 58.8 3.3 25 437-461 6-30 (323)
422 4gzl_A RAS-related C3 botulinu 90.7 0.11 3.9E-06 53.4 3.0 25 436-460 30-54 (204)
423 2yc2_C IFT27, small RAB-relate 90.7 0.052 1.8E-06 55.1 0.4 22 438-459 22-43 (208)
424 2qmh_A HPR kinase/phosphorylas 90.7 0.12 4E-06 55.0 3.1 27 434-460 32-58 (205)
425 3ld9_A DTMP kinase, thymidylat 90.7 0.14 4.8E-06 55.0 3.7 28 434-461 19-46 (223)
426 2ce7_A Cell division protein F 90.7 0.13 4.3E-06 61.3 3.7 26 433-460 48-73 (476)
427 2j0v_A RAC-like GTP-binding pr 90.7 0.12 4E-06 53.1 3.0 23 438-460 11-33 (212)
428 3cnl_A YLQF, putative uncharac 90.6 0.13 4.3E-06 56.4 3.4 25 437-461 100-124 (262)
429 3exa_A TRNA delta(2)-isopenten 90.6 0.14 4.8E-06 57.9 3.7 26 436-461 3-28 (322)
430 3q3j_B RHO-related GTP-binding 90.5 0.12 4.2E-06 53.7 3.1 23 438-460 29-51 (214)
431 4dcu_A GTP-binding protein ENG 90.4 0.11 3.7E-06 61.1 2.7 47 988-1037 305-352 (456)
432 2vf7_A UVRA2, excinuclease ABC 90.4 0.09 3.1E-06 66.6 2.1 32 420-453 22-53 (842)
433 3bh0_A DNAB-like replicative h 90.1 0.17 5.8E-06 56.6 3.9 28 433-460 65-92 (315)
434 1mvl_A PPC decarboxylase athal 89.9 0.019 6.4E-07 61.3 -3.8 88 8-117 104-191 (209)
435 3foz_A TRNA delta(2)-isopenten 89.8 0.17 5.8E-06 57.1 3.6 26 436-461 10-35 (316)
436 3syl_A Protein CBBX; photosynt 89.8 0.15 5.3E-06 55.6 3.2 28 434-461 65-92 (309)
437 1puj_A YLQF, conserved hypothe 89.8 0.18 6E-06 55.8 3.7 26 435-460 119-144 (282)
438 2chg_A Replication factor C sm 89.6 0.17 5.8E-06 51.3 3.1 22 439-460 41-62 (226)
439 3t15_A Ribulose bisphosphate c 89.5 0.21 7.3E-06 55.1 4.1 28 433-460 33-60 (293)
440 1sky_E F1-ATPase, F1-ATP synth 89.5 0.095 3.3E-06 62.2 1.4 36 426-461 141-176 (473)
441 2ius_A DNA translocase FTSK; n 89.3 0.15 5.1E-06 61.2 2.8 26 433-458 164-189 (512)
442 2zts_A Putative uncharacterize 89.3 0.18 6.1E-06 52.9 3.2 34 424-457 16-51 (251)
443 3pih_A Uvrabc system protein A 89.2 0.14 4.8E-06 65.4 2.6 32 420-453 10-41 (916)
444 3eph_A TRNA isopentenyltransfe 89.1 0.19 6.5E-06 58.6 3.4 25 437-461 3-27 (409)
445 3p32_A Probable GTPase RV1496/ 89.1 0.18 6.3E-06 57.2 3.3 27 435-461 78-104 (355)
446 2v1u_A Cell division control p 89.1 0.16 5.5E-06 56.6 2.7 28 434-461 42-69 (387)
447 2orw_A Thymidine kinase; TMTK, 88.9 0.24 8.2E-06 51.1 3.7 25 435-459 2-27 (184)
448 2i1q_A DNA repair and recombin 88.9 0.18 6.1E-06 56.2 2.9 27 433-459 95-121 (322)
449 2z4s_A Chromosomal replication 88.9 0.17 5.9E-06 59.3 2.9 26 436-461 130-155 (440)
450 1sxj_D Activator 1 41 kDa subu 88.7 0.21 7.1E-06 55.4 3.3 23 439-461 61-83 (353)
451 3n70_A Transport activator; si 88.7 0.24 8.1E-06 48.7 3.3 26 436-461 24-49 (145)
452 3gj0_A GTP-binding nuclear pro 88.7 0.15 5E-06 52.9 1.9 23 438-460 17-40 (221)
453 2r62_A Cell division protease 88.6 0.12 4E-06 55.5 1.2 23 439-461 47-69 (268)
454 1xwi_A SKD1 protein; VPS4B, AA 88.6 0.25 8.6E-06 55.3 3.9 28 433-460 42-69 (322)
455 3th5_A RAS-related C3 botulinu 88.2 0.087 3E-06 53.9 0.0 23 437-459 31-53 (204)
456 4hlc_A DTMP kinase, thymidylat 88.4 0.24 8.2E-06 52.2 3.4 26 436-461 2-27 (205)
457 1f5n_A Interferon-induced guan 88.4 0.19 6.6E-06 61.3 2.9 27 434-460 36-62 (592)
458 2r6f_A Excinuclease ABC subuni 88.4 0.16 5.3E-06 65.1 2.2 32 420-453 30-61 (972)
459 2ygr_A Uvrabc system protein A 88.3 0.16 5.3E-06 65.3 2.1 32 420-453 32-63 (993)
460 3uk6_A RUVB-like 2; hexameric 88.3 0.26 8.9E-06 55.2 3.8 28 434-461 68-95 (368)
461 1wxq_A GTP-binding protein; st 88.2 0.22 7.4E-06 57.8 3.1 23 438-460 2-24 (397)
462 2hjg_A GTP-binding protein ENG 88.1 0.2 6.9E-06 58.4 2.8 45 991-1037 287-332 (436)
463 1ypw_A Transitional endoplasmi 88.0 0.11 3.8E-06 65.5 0.6 29 433-461 508-536 (806)
464 3hws_A ATP-dependent CLP prote 88.0 0.23 7.9E-06 56.1 3.2 27 435-461 50-76 (363)
465 2x2e_A Dynamin-1; nitration, h 88.0 0.18 6E-06 57.2 2.1 23 438-460 33-55 (353)
466 3dm5_A SRP54, signal recogniti 88.0 0.21 7.1E-06 58.9 2.8 27 435-461 99-125 (443)
467 1ofh_A ATP-dependent HSL prote 88.0 0.25 8.7E-06 53.5 3.3 26 436-461 50-75 (310)
468 1ko7_A HPR kinase/phosphatase; 88.0 0.25 8.4E-06 55.8 3.3 24 435-458 143-166 (314)
469 3l0i_B RAS-related protein RAB 87.9 0.062 2.1E-06 54.8 -1.5 22 438-459 35-56 (199)
470 2v3c_C SRP54, signal recogniti 87.9 0.16 5.6E-06 59.6 1.8 27 435-461 98-124 (432)
471 1d2n_A N-ethylmaleimide-sensit 87.8 0.25 8.6E-06 53.3 3.1 26 435-460 63-88 (272)
472 3r7w_A Gtpase1, GTP-binding pr 87.6 0.26 9E-06 54.7 3.2 25 436-460 3-27 (307)
473 3tqf_A HPR(Ser) kinase; transf 87.5 0.3 1E-05 50.9 3.3 25 434-458 14-38 (181)
474 3eie_A Vacuolar protein sortin 87.5 0.32 1.1E-05 54.2 3.8 28 434-461 49-76 (322)
475 2qgz_A Helicase loader, putati 87.5 0.31 1.1E-05 54.3 3.7 26 436-461 152-177 (308)
476 2qby_B CDC6 homolog 3, cell di 87.4 0.32 1.1E-05 54.5 3.8 27 435-461 44-70 (384)
477 3gmt_A Adenylate kinase; ssgci 87.3 0.28 9.6E-06 53.0 3.1 23 438-460 10-32 (230)
478 2qpt_A EH domain-containing pr 87.1 0.28 9.5E-06 59.3 3.2 26 436-461 65-90 (550)
479 3d8b_A Fidgetin-like protein 1 87.0 0.34 1.2E-05 55.0 3.7 27 434-460 115-141 (357)
480 2q6t_A DNAB replication FORK h 87.0 0.35 1.2E-05 56.6 3.9 29 433-461 197-225 (444)
481 4a1f_A DNAB helicase, replicat 87.0 0.36 1.2E-05 55.0 3.8 29 433-461 43-71 (338)
482 3ec1_A YQEH GTPase; atnos1, at 86.8 0.29 1E-05 56.1 3.1 24 436-459 162-185 (369)
483 3geh_A MNME, tRNA modification 86.7 0.31 1E-05 57.7 3.3 23 437-459 225-247 (462)
484 1um8_A ATP-dependent CLP prote 86.7 0.31 1.1E-05 55.3 3.2 27 435-461 71-97 (376)
485 3h2y_A GTPase family protein; 86.4 0.3 1E-05 56.0 2.9 25 436-460 160-184 (368)
486 2qen_A Walker-type ATPase; unk 86.3 0.38 1.3E-05 52.8 3.6 24 436-459 31-54 (350)
487 1u94_A RECA protein, recombina 86.0 0.35 1.2E-05 55.3 3.2 28 433-460 60-87 (356)
488 4b4t_K 26S protease regulatory 85.9 0.43 1.5E-05 56.0 3.9 29 433-461 203-231 (428)
489 3pfi_A Holliday junction ATP-d 85.8 0.38 1.3E-05 53.4 3.2 24 438-461 57-80 (338)
490 4b4t_L 26S protease subunit RP 85.8 0.45 1.5E-05 56.0 3.9 29 433-461 212-240 (437)
491 4b4t_M 26S protease regulatory 85.7 0.46 1.6E-05 55.9 3.9 29 433-461 212-240 (434)
492 2qp9_X Vacuolar protein sortin 85.6 0.4 1.4E-05 54.4 3.4 28 434-461 82-109 (355)
493 3q5d_A Atlastin-1; G protein, 85.4 0.39 1.3E-05 56.7 3.3 26 435-460 66-91 (447)
494 2j69_A Bacterial dynamin-like 85.2 0.42 1.4E-05 59.3 3.5 26 435-460 68-93 (695)
495 2hjg_A GTP-binding protein ENG 85.2 0.4 1.4E-05 55.9 3.2 24 437-460 176-199 (436)
496 2b8t_A Thymidine kinase; deoxy 85.2 0.48 1.6E-05 50.8 3.5 27 434-460 10-36 (223)
497 1lnz_A SPO0B-associated GTP-bi 85.1 0.3 1E-05 55.5 2.1 23 438-460 160-182 (342)
498 1mky_A Probable GTP-binding pr 85.0 0.44 1.5E-05 55.6 3.4 44 992-1037 294-338 (439)
499 1x6v_B Bifunctional 3'-phospho 84.9 0.45 1.5E-05 58.5 3.6 23 435-457 51-73 (630)
500 2vhj_A Ntpase P4, P4; non- hyd 84.8 0.36 1.2E-05 54.8 2.4 25 433-457 120-144 (331)
No 1
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.70 E-value=1.2e-17 Score=198.54 Aligned_cols=167 Identities=16% Similarity=0.150 Sum_probs=131.6
Q ss_pred cccccccCCcEEEEecceeeeeecceec---ccCcceeeeeeccCCCc--eEEEEEEeecccCCceEEEEEecccCCCCc
Q psy5893 661 YGKILKSGNPVIMSVGWRRFQTLPIYSK---QEDNMRYRMLKYTPQHV--ACMAHFWGPITRSGTGFLAVQDVAKREPGF 735 (1182)
Q Consensus 661 ~~~~lkskdpli~s~G~RRf~~~Piys~---~~~n~r~k~lky~~~~~--~c~atfygPi~~~~t~vl~~~~~~~~~~~~ 735 (1182)
++.+|++..++.|+||..+..+....-. -+.++.+..-+++..+. .|...+-.|+++.+-+-++++...+.....
T Consensus 303 ~~~~l~~g~~~~l~~~t~~~~~~v~~~~~~~~d~~~~~~~~~~l~~g~~~~v~l~~~~pv~~~~~~rfilr~~~~~~~~~ 382 (482)
T 1wb1_A 303 FKYNLTPKMKVHLNVGMLIVPAVAVPFKKVTFGKTEENIILNEVISGNEXYXAFELEEKVLAEVGDRVLITRLDLPPTTL 382 (482)
T ss_dssp CCSCCCSSCEEEEEETTEEEEEEEEEEEECCSSSCCCEEECCSSCCSSCCCEEEEEEEEECCCSSCCCBEECTTSCTTSC
T ss_pred CCcccCCCCEEEEEEcccEEEEEEEEEeccccccccccccchhhcCCCEEEEEEEcCccEEecCCCeEEEEECCCCccCc
Confidence 4579999999999999999887765433 23333344445555554 566667799988765555565522112346
Q ss_pred EEEEEEEEecCCCCceeeEeEEEeeceeE-----EeeceEEEeccCCChHhhccccCceeEeccCc-CceeecccCCCCc
Q psy5893 736 RVIATGTILDANQTAEVTKKLKLTGVPMK-----IYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGI-RGQIKKALNKPQG 809 (1182)
Q Consensus 736 ri~atG~v~~~d~~~~i~Kki~LtG~P~K-----I~K~ta~Ir~MF~s~~eV~~F~~~~l~T~sGi-rG~IK~~lg~t~G 809 (1182)
|.+|.|.|+.+.+ +++++|...+.| ++++||+||+||++..+|+||.|.+|+|++|. +|+|+.++| ++|
T Consensus 383 ~tvg~G~v~~~~~----~~~l~v~k~~~k~g~v~~~~~~~i~~~lf~~~~~~~~f~g~~v~~~~g~~~G~I~~~fg-~~G 457 (482)
T 1wb1_A 383 RIXGHGLIEEFKP----IKDLNIKKEVLREGKVKIDKGRTVIDGLAQSKVAAEKLIGEEISIEGKDIVGKIKGTFG-TKG 457 (482)
T ss_dssp CCCCBCCEEECCC----GGGSCCCCCCEEEEEEECCSSCCEETTSCSSHHHHHHSCSCCCEETTTCCCBCCCCCBT-TTT
T ss_pred eEeeEEEEEeccc----chhceeeehhhccCcEEEcCCEEEEEcCccchhhhHHhcCcEEEEcCCceEEEEeccCC-CCc
Confidence 8999999999877 577777666666 78899999999999999999999999999999 999999997 999
Q ss_pred eeEEEeccccccCCEEEEeccccc
Q psy5893 810 AFRATFEDKIMLSDIVFCRTWYKV 833 (1182)
Q Consensus 810 ~fka~Fe~ki~~~D~V~lr~~y~~ 833 (1182)
+|||+|+++|.+||+|||| +|+|
T Consensus 458 ~~~~~f~~~~~~~d~v~~~-~~~~ 480 (482)
T 1wb1_A 458 LLTAEFSGNVENRDKVILN-RLRR 480 (482)
T ss_dssp BBCCCBSSCCCSSCEEEEE-CCCS
T ss_pred eEEEEecCCCCCCCeeeee-hhhc
Confidence 9999999999999999995 4554
No 2
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.88 E-value=5.2e-10 Score=124.08 Aligned_cols=73 Identities=22% Similarity=0.125 Sum_probs=56.7
Q ss_pred ceeeeecccccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc----------cccc
Q psy5893 411 FRRKEDIQAKKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII----------KDSI 480 (1182)
Q Consensus 411 ~~~~~~~~~~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL----------rdsI 480 (1182)
-.+...+.....++..++++ +++|++++|+|||||||||||++|+|+++ |.+|.+.+++.++ +..|
T Consensus 11 ~~ls~~y~~~~~~L~~isl~--i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~--p~~G~I~~~G~~i~~~~~~~~~~~~~i 86 (275)
T 3gfo_A 11 EELNYNYSDGTHALKGINMN--IKRGEVTAILGGNGVGKSTLFQNFNGILK--PSSGRILFDNKPIDYSRKGIMKLRESI 86 (275)
T ss_dssp EEEEEECTTSCEEEEEEEEE--EETTSEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCCSHHHHHHHHHSE
T ss_pred EEEEEEECCCCeEEEeeEEE--EcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeEEEECCEECCcccccHHHHhCcE
Confidence 33444443333477888888 99999999999999999999999999999 4567777766544 3568
Q ss_pred ceeeecC
Q psy5893 481 RDCFVTG 487 (1182)
Q Consensus 481 r~VFQTG 487 (1182)
+++||..
T Consensus 87 g~v~Q~~ 93 (275)
T 3gfo_A 87 GIVFQDP 93 (275)
T ss_dssp EEECSSG
T ss_pred EEEEcCc
Confidence 9999975
No 3
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.86 E-value=8.1e-10 Score=119.55 Aligned_cols=66 Identities=18% Similarity=0.086 Sum_probs=54.1
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccccc------------cccceeeecCcc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIK------------DSIRDCFVTGKW 489 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeELr------------dsIr~VFQTGkw 489 (1182)
.++..++++ +++|++++|+|||||||||||++|+|+++ |.+|.+.+++.++. ..|+++||...+
T Consensus 19 ~~L~~isl~--i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l 94 (235)
T 3tif_A 19 YALKNVNLN--IKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNL 94 (235)
T ss_dssp EEEEEEEEE--ECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCC
T ss_pred eeEEeeeEE--EcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCcc
Confidence 467788888 99999999999999999999999999999 45677777665431 358999999766
Q ss_pred cc
Q psy5893 490 KA 491 (1182)
Q Consensus 490 ~~ 491 (1182)
..
T Consensus 95 ~~ 96 (235)
T 3tif_A 95 IP 96 (235)
T ss_dssp CT
T ss_pred CC
Confidence 53
No 4
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.85 E-value=1e-09 Score=125.98 Aligned_cols=67 Identities=18% Similarity=0.167 Sum_probs=55.3
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc----------ccccceeeecCccc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII----------KDSIRDCFVTGKWK 490 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL----------rdsIr~VFQTGkw~ 490 (1182)
..++.+++++ +++|++++|+|||||||||||++|+|+++| .+|.+.+++.++ ...|+++||...++
T Consensus 17 ~~~L~~vsl~--i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p--~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~ 92 (359)
T 3fvq_A 17 TPVLNDISLS--LDPGEILFIIGASGCGKTTLLRCLAGFEQP--DSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLF 92 (359)
T ss_dssp EEEEEEEEEE--ECTTCEEEEEESTTSSHHHHHHHHHTSSCC--SEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCC
T ss_pred EEEEEeeEEE--EcCCCEEEEECCCCchHHHHHHHHhcCCCC--CCcEEEECCEECcccccccchhhCCEEEEeCCCcCC
Confidence 4567788888 999999999999999999999999999994 566666666544 35699999998765
Q ss_pred c
Q psy5893 491 A 491 (1182)
Q Consensus 491 ~ 491 (1182)
.
T Consensus 93 p 93 (359)
T 3fvq_A 93 P 93 (359)
T ss_dssp T
T ss_pred C
Confidence 4
No 5
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.83 E-value=1.5e-09 Score=124.92 Aligned_cols=67 Identities=24% Similarity=0.204 Sum_probs=55.5
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc-----------ccccceeeecCccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII-----------KDSIRDCFVTGKWK 490 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL-----------rdsIr~VFQTGkw~ 490 (1182)
.++..++++ +++|++++|+|||||||||||++|+|+++ |.+|.+.+++.++ +..|+++||...+.
T Consensus 42 ~aL~~vsl~--i~~Gei~~IiGpnGaGKSTLlr~i~GL~~--p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~ 117 (366)
T 3tui_C 42 QALNNVSLH--VPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLL 117 (366)
T ss_dssp EEEEEEEEE--ECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCC
T ss_pred EEEEeeEEE--EcCCCEEEEEcCCCchHHHHHHHHhcCCC--CCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccC
Confidence 467888888 99999999999999999999999999999 4566677666543 35799999998765
Q ss_pred cc
Q psy5893 491 AS 492 (1182)
Q Consensus 491 ~~ 492 (1182)
..
T Consensus 118 ~~ 119 (366)
T 3tui_C 118 SS 119 (366)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 6
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=98.82 E-value=2.2e-09 Score=116.55 Aligned_cols=67 Identities=18% Similarity=0.134 Sum_probs=53.3
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccc--------ccccccceeeecCcccc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTL--------IIKDSIRDCFVTGKWKA 491 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdge--------ELrdsIr~VFQTGkw~~ 491 (1182)
+..+..++++ +++|++++|+|||||||||||++|+|+++|+ +|.+.+++. .++..|+++||...+..
T Consensus 15 ~~vl~~vsl~--i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~ 89 (243)
T 1mv5_A 15 EQILRDISFE--AQPNSIIAFAGPSGGGKSTIFSLLERFYQPT--AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA 89 (243)
T ss_dssp SCSEEEEEEE--ECTTEEEEEECCTTSSHHHHHHHHTTSSCCS--BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC
T ss_pred CceEEEeEEE--EcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc
Confidence 4567778887 9999999999999999999999999999954 555555443 23457899999876654
No 7
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=98.82 E-value=1.4e-09 Score=122.45 Aligned_cols=85 Identities=20% Similarity=0.105 Sum_probs=64.3
Q ss_pred eceeeeecccccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc--------ccccc
Q psy5893 410 KFRRKEDIQAKKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII--------KDSIR 481 (1182)
Q Consensus 410 ~~~~~~~~~~~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL--------rdsIr 481 (1182)
+-.+...|.....++..++++ +++|++++|||||||||||||++|+|+++ |.+|.+.+++.++ +..|+
T Consensus 56 ~~~vs~~y~~~~~vL~~isl~--i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~G~~i~~~~~~~~r~~i~ 131 (306)
T 3nh6_A 56 FENVHFSYADGRETLQDVSFT--VMPGQTLALVGPSGAGKSTILRLLFRFYD--ISSGCIRIDGQDISQVTQASLRSHIG 131 (306)
T ss_dssp EEEEEEESSTTCEEEEEEEEE--ECTTCEEEEESSSCHHHHHHHHHHTTSSC--CSEEEEEETTEETTSBCHHHHHHTEE
T ss_pred EEEEEEEcCCCCceeeeeeEE--EcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCcEEEECCEEcccCCHHHHhcceE
Confidence 444555554345577888887 99999999999999999999999999999 4566666666543 45799
Q ss_pred eeeecCcccccchHHHh
Q psy5893 482 DCFVTGKWKASEDASEL 498 (1182)
Q Consensus 482 ~VFQTGkw~~~~~~~~l 498 (1182)
++||...++...-.++|
T Consensus 132 ~v~Q~~~lf~~Tv~eNi 148 (306)
T 3nh6_A 132 VVPQDTVLFNDTIADNI 148 (306)
T ss_dssp EECSSCCCCSEEHHHHH
T ss_pred EEecCCccCcccHHHHH
Confidence 99999877754444444
No 8
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.82 E-value=1.6e-09 Score=125.15 Aligned_cols=67 Identities=19% Similarity=0.036 Sum_probs=55.4
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc------ccccceeeecCcccc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII------KDSIRDCFVTGKWKA 491 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL------rdsIr~VFQTGkw~~ 491 (1182)
..++.+++++ +++|++++|+|||||||||||++|+|+++ |.+|.+.+++..+ ...|+++||+..++.
T Consensus 16 ~~~L~~vsl~--i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p 88 (381)
T 3rlf_A 16 VVVSKDINLD--IHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYP 88 (381)
T ss_dssp EEEEEEEEEE--ECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTCCGGGSCEEEECTTCCCCT
T ss_pred EEEEeeeEEE--ECCCCEEEEEcCCCchHHHHHHHHHcCCC--CCCeEEEECCEECCCCCHHHCCEEEEecCCcCCC
Confidence 4567888888 99999999999999999999999999999 4566676666544 246999999987653
No 9
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.80 E-value=1.8e-09 Score=118.50 Aligned_cols=77 Identities=16% Similarity=0.066 Sum_probs=58.1
Q ss_pred eeceeeeecccccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc-------ccccc
Q psy5893 409 RKFRRKEDIQAKKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII-------KDSIR 481 (1182)
Q Consensus 409 ~~~~~~~~~~~~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL-------rdsIr 481 (1182)
.+-.+...+. .+..+..++++ +++|++++|+|||||||||||++|+|+++| .+|.+.+++..+ +..|+
T Consensus 17 ~i~~l~~~y~-~~~vl~~vsl~--i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~~~~~~~~~~~~i~ 91 (256)
T 1vpl_A 17 VVKDLRKRIG-KKEILKGISFE--IEEGEIFGLIGPNGAGKTTTLRIISTLIKP--SSGIVTVFGKNVVEEPHEVRKLIS 91 (256)
T ss_dssp EEEEEEEEET-TEEEEEEEEEE--ECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEETTTCHHHHHTTEE
T ss_pred EEEEEEEEEC-CEEEEEeeEEE--EcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEECCccHHHHhhcEE
Confidence 3444444443 24577888888 999999999999999999999999999994 566666665443 35689
Q ss_pred eeeecCccc
Q psy5893 482 DCFVTGKWK 490 (1182)
Q Consensus 482 ~VFQTGkw~ 490 (1182)
++||...+.
T Consensus 92 ~v~q~~~l~ 100 (256)
T 1vpl_A 92 YLPEEAGAY 100 (256)
T ss_dssp EECTTCCCC
T ss_pred EEcCCCCCC
Confidence 999987554
No 10
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=98.80 E-value=2.2e-09 Score=123.29 Aligned_cols=67 Identities=19% Similarity=0.132 Sum_probs=54.5
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc------ccccceeeecCcccc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII------KDSIRDCFVTGKWKA 491 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL------rdsIr~VFQTGkw~~ 491 (1182)
..++..++++ +++|++++|+|||||||||||++|+|+++ |.+|.+.+++..+ ...|+++||...++.
T Consensus 16 ~~vl~~vsl~--i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~ 88 (359)
T 2yyz_A 16 VKAVDGVSFE--VKDGEFVALLGPSGCGKTTTLLMLAGIYK--PTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYP 88 (359)
T ss_dssp EEEEEEEEEE--ECTTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCGGGTTEEEECSSCCCCT
T ss_pred EEEEeeeEEE--EcCCCEEEEEcCCCchHHHHHHHHHCCCC--CCccEEEECCEECCCCChhhCcEEEEecCcccCC
Confidence 3467778887 99999999999999999999999999999 4566666665543 356999999976653
No 11
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.79 E-value=1.6e-09 Score=116.39 Aligned_cols=66 Identities=14% Similarity=-0.035 Sum_probs=52.8
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc-----------c-cccceeeecCc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII-----------K-DSIRDCFVTGK 488 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL-----------r-dsIr~VFQTGk 488 (1182)
+..+..++++ +++|++++|+|||||||||||++|+|+++| .+|.+.+++.++ + ..|+++||...
T Consensus 17 ~~~l~~vsl~--i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~ 92 (224)
T 2pcj_A 17 YEILKGISLS--VKKGEFVSIIGASGSGKSTLLYILGLLDAP--TEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHY 92 (224)
T ss_dssp EEEEEEEEEE--EETTCEEEEEECTTSCHHHHHHHHTTSSCC--SEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCC
T ss_pred EeeEeeeEEE--EcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcc
Confidence 3467777887 999999999999999999999999999994 566666665443 1 45889999865
Q ss_pred cc
Q psy5893 489 WK 490 (1182)
Q Consensus 489 w~ 490 (1182)
+.
T Consensus 93 l~ 94 (224)
T 2pcj_A 93 LI 94 (224)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 12
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.78 E-value=2.5e-09 Score=122.92 Aligned_cols=67 Identities=16% Similarity=0.104 Sum_probs=54.5
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc------ccccceeeecCcccc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII------KDSIRDCFVTGKWKA 491 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL------rdsIr~VFQTGkw~~ 491 (1182)
..++..++++ +++|++++|+|||||||||||++|+|+++ |.+|.+.+++..+ ...|+++||...++.
T Consensus 16 ~~vl~~vsl~--i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~ 88 (362)
T 2it1_A 16 FTALNNINLK--IKDGEFMALLGPSGSGKSTLLYTIAGIYK--PTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYP 88 (362)
T ss_dssp SEEEEEEEEE--ECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCGGGTTEEEECTTCCCCT
T ss_pred EEEEEeeEEE--ECCCCEEEEECCCCchHHHHHHHHhcCCC--CCceEEEECCEECCcCCHhHCcEEEEecCcccCC
Confidence 3467778887 99999999999999999999999999999 4566666665543 356999999976653
No 13
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=98.78 E-value=1.9e-09 Score=117.99 Aligned_cols=66 Identities=21% Similarity=0.057 Sum_probs=53.0
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc---------ccccceeeecCccc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII---------KDSIRDCFVTGKWK 490 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL---------rdsIr~VFQTGkw~ 490 (1182)
+.++..++++ +++|++++|+|||||||||||++|+|+++| .+|.+.+++..+ +..|+++||...+.
T Consensus 20 ~~vl~~vsl~--i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~ 94 (257)
T 1g6h_A 20 FKALDGVSIS--VNKGDVTLIIGPNGSGKSTLINVITGFLKA--DEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPL 94 (257)
T ss_dssp EEEEEEECCE--EETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGG
T ss_pred EeeEeeeEEE--EeCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECCCCCHHHHHhCCEEEEccCCccC
Confidence 3467777877 999999999999999999999999999994 566666665543 23588999987554
No 14
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=98.78 E-value=2.6e-09 Score=116.46 Aligned_cols=67 Identities=12% Similarity=0.053 Sum_probs=54.0
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc--------ccccceeeecCcccc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII--------KDSIRDCFVTGKWKA 491 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL--------rdsIr~VFQTGkw~~ 491 (1182)
+..+..++++ +++|++++|+|||||||||||++|+|+++| .+|.+.+++.++ +..|+++||...+..
T Consensus 22 ~~vl~~vsl~--i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~ 96 (247)
T 2ff7_A 22 PVILDNINLS--IKQGEVIGIVGRSGSGKSTLTKLIQRFYIP--ENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN 96 (247)
T ss_dssp CEEEEEEEEE--EETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT
T ss_pred cceeeeeEEE--EcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc
Confidence 4567778887 999999999999999999999999999994 566666665433 346899999876553
No 15
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.78 E-value=2.2e-09 Score=116.46 Aligned_cols=67 Identities=15% Similarity=0.049 Sum_probs=53.5
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc---------ccccceeeecCcccc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII---------KDSIRDCFVTGKWKA 491 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL---------rdsIr~VFQTGkw~~ 491 (1182)
+..+..++++ +++|++++|+|||||||||||++|+|+++| .+|.+.+++..+ +..|+++||...+..
T Consensus 19 ~~vl~~vsl~--i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~ 94 (240)
T 1ji0_A 19 IHAIKGIDLK--VPRGQIVTLIGANGAGKTTTLSAIAGLVRA--QKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFP 94 (240)
T ss_dssp EEEEEEEEEE--EETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCT
T ss_pred eeEEeeeEEE--EcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCCCCHHHHHhCCEEEEecCCccCC
Confidence 3467778887 999999999999999999999999999994 566666665543 234899999876543
No 16
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.78 E-value=2.2e-09 Score=118.23 Aligned_cols=66 Identities=20% Similarity=0.118 Sum_probs=53.3
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc----------ccccceeeecCccc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII----------KDSIRDCFVTGKWK 490 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL----------rdsIr~VFQTGkw~ 490 (1182)
+..+..++++ +++|++++|+|||||||||||++|+|+++| .+|.+.+++.++ +..|+++||...+.
T Consensus 37 ~~vL~~vsl~--i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~ 112 (263)
T 2olj_A 37 LEVLKGINVH--IREGEVVVVIGPSGSGKSTFLRCLNLLEDF--DEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLF 112 (263)
T ss_dssp EEEEEEEEEE--ECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCC
T ss_pred EEEEEeeEEE--EcCCCEEEEEcCCCCcHHHHHHHHHcCCCC--CCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCC
Confidence 3467778887 999999999999999999999999999994 566666665443 34588999986554
No 17
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.77 E-value=2.6e-09 Score=122.50 Aligned_cols=67 Identities=18% Similarity=0.084 Sum_probs=54.4
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc------ccccceeeecCcccc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII------KDSIRDCFVTGKWKA 491 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL------rdsIr~VFQTGkw~~ 491 (1182)
..++..++++ +++|++++|+|||||||||||++|+|+++ |.+|.+.+++..+ ...|+++||...++.
T Consensus 28 ~~vl~~vsl~--i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~ 100 (355)
T 1z47_A 28 ARSVRGVSFQ--IREGEMVGLLGPSGSGKTTILRLIAGLER--PTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQ 100 (355)
T ss_dssp TTCEEEEEEE--EETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTCCGGGSSEEEECGGGCCCT
T ss_pred CEEEeeeEEE--ECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEECCcCChhhCcEEEEecCcccCC
Confidence 3467777877 99999999999999999999999999999 4566666666543 356999999976653
No 18
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=98.77 E-value=2.6e-09 Score=123.19 Aligned_cols=66 Identities=17% Similarity=0.057 Sum_probs=50.6
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc------ccccceeeecCccc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII------KDSIRDCFVTGKWK 490 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL------rdsIr~VFQTGkw~ 490 (1182)
..++..++++ +++|++++|+|||||||||||++|+|+++ |.+|.+.+++..+ ...|+++||...++
T Consensus 24 ~~vl~~vsl~--i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~ 95 (372)
T 1v43_A 24 FTAVNKLNLT--IKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVW 95 (372)
T ss_dssp EEEEEEEEEE--ECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCGGGGTEEEEEC-----
T ss_pred EEEEeeeEEE--ECCCCEEEEECCCCChHHHHHHHHHcCCC--CCceEEEECCEECCCCChhhCcEEEEecCcccC
Confidence 3467778877 99999999999999999999999999999 4566666665543 35699999997655
No 19
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.77 E-value=3.5e-09 Score=116.98 Aligned_cols=67 Identities=18% Similarity=0.027 Sum_probs=54.4
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc--------ccccceeeecCcccc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII--------KDSIRDCFVTGKWKA 491 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL--------rdsIr~VFQTGkw~~ 491 (1182)
+..+..++++ +++|++++|+|||||||||||++|+|+++| .+|.+.+++.++ +..|+++||...+..
T Consensus 32 ~~vl~~vsl~--i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~ 106 (271)
T 2ixe_A 32 VQVLQGLTFT--LYPGKVTALVGPNGSGKSTVAALLQNLYQP--TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG 106 (271)
T ss_dssp SCCEEEEEEE--ECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS
T ss_pred ceeeEeeEEE--ECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCCEEEECCEEcccCCHHHHhccEEEEecCCcccc
Confidence 4567778887 999999999999999999999999999994 566666666543 346899999876654
No 20
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=98.77 E-value=2.4e-09 Score=123.48 Aligned_cols=67 Identities=13% Similarity=0.051 Sum_probs=53.7
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc------------ccccceeeecCc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII------------KDSIRDCFVTGK 488 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL------------rdsIr~VFQTGk 488 (1182)
..++..++++ +++|++++|+|||||||||||++|+|+++| .+|.+.+++..+ ...|+++||...
T Consensus 16 ~~vl~~vsl~--i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~ 91 (372)
T 1g29_1 16 VTAVREMSLE--VKDGEFMILLGPSGCGKTTTLRMIAGLEEP--SRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYA 91 (372)
T ss_dssp EEEEEEEEEE--EETTCEEEEECSTTSSHHHHHHHHHTSSCC--SEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCC
T ss_pred EEEEeeeEEE--EcCCCEEEEECCCCcHHHHHHHHHHcCCCC--CccEEEECCEECccccccccCCHhHCCEEEEeCCCc
Confidence 3467777877 999999999999999999999999999994 566666655433 246899999976
Q ss_pred ccc
Q psy5893 489 WKA 491 (1182)
Q Consensus 489 w~~ 491 (1182)
++.
T Consensus 92 l~~ 94 (372)
T 1g29_1 92 LYP 94 (372)
T ss_dssp CCT
T ss_pred cCC
Confidence 653
No 21
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=98.77 E-value=2.4e-09 Score=114.60 Aligned_cols=65 Identities=20% Similarity=0.092 Sum_probs=53.6
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccc---cccccceeeecCccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLI---IKDSIRDCFVTGKWK 490 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeE---LrdsIr~VFQTGkw~ 490 (1182)
..+..++++ +++|++++|+|||||||||||++|+|+++ |.+|.+.+++.. .+..|+++||...+.
T Consensus 23 ~il~~vsl~--i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~ 90 (214)
T 1sgw_A 23 PVLERITMT--IEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPITKVKGKIFFLPEEIIVP 90 (214)
T ss_dssp EEEEEEEEE--EETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEGGGGGGGEEEECSSCCCC
T ss_pred eEEeeeEEE--EcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEhhhhcCcEEEEeCCCcCC
Confidence 567777877 99999999999999999999999999998 456667666654 356789999987654
No 22
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=98.76 E-value=2.7e-09 Score=117.27 Aligned_cols=65 Identities=17% Similarity=0.099 Sum_probs=52.3
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc---------------------cccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII---------------------KDSI 480 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL---------------------rdsI 480 (1182)
..+..++++ +++|++++|+|||||||||||++|+|+++| .+|.+.+++.++ +..+
T Consensus 20 ~vl~~vsl~--i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 95 (262)
T 1b0u_A 20 EVLKGVSLQ--ARAGDVISIIGSSGSGKSTFLRCINFLEKP--SEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRL 95 (262)
T ss_dssp EEEEEEEEE--ECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHE
T ss_pred EEEEeeEEE--EcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEccccccccccccccChhhHHHHhcce
Confidence 467778887 999999999999999999999999999994 556666655433 2458
Q ss_pred ceeeecCccc
Q psy5893 481 RDCFVTGKWK 490 (1182)
Q Consensus 481 r~VFQTGkw~ 490 (1182)
+++||...+.
T Consensus 96 ~~v~Q~~~l~ 105 (262)
T 1b0u_A 96 TMVFQHFNLW 105 (262)
T ss_dssp EEECSSCCCC
T ss_pred EEEecCcccC
Confidence 8999986554
No 23
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.76 E-value=3.3e-09 Score=114.85 Aligned_cols=60 Identities=20% Similarity=0.168 Sum_probs=50.7
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccccccccceeeecCcc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIKDSIRDCFVTGKW 489 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeELrdsIr~VFQTGkw 489 (1182)
+..+..++++ +++|++++|+|||||||||||++|+|+++ |.+|.+.+++ .++++||...+
T Consensus 18 ~~vl~~vsl~--i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g-----~i~~v~Q~~~~ 77 (237)
T 2cbz_A 18 PPTLNGITFS--IPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKG-----SVAYVPQQAWI 77 (237)
T ss_dssp CCSEEEEEEE--ECTTCEEEEECSTTSSHHHHHHHHTTCSE--EEEEEEEECS-----CEEEECSSCCC
T ss_pred CceeeeeEEE--ECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECC-----EEEEEcCCCcC
Confidence 4567778887 99999999999999999999999999998 4567777765 48999998643
No 24
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=98.74 E-value=2.6e-09 Score=122.50 Aligned_cols=65 Identities=15% Similarity=0.074 Sum_probs=53.0
Q ss_pred cccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc-----------ccccceeeecCcccc
Q psy5893 423 HVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII-----------KDSIRDCFVTGKWKA 491 (1182)
Q Consensus 423 ~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL-----------rdsIr~VFQTGkw~~ 491 (1182)
++..++++ +++|++++|+|||||||||||++|+|+++| .+|.+.+++..+ ...|+++||...++.
T Consensus 20 vl~~vsl~--i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~ 95 (353)
T 1oxx_K 20 ALDNVNIN--IENGERFGILGPSGAGKTTFMRIIAGLDVP--STGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYP 95 (353)
T ss_dssp EEEEEEEE--ECTTCEEEEECSCHHHHHHHHHHHHTSSCC--SEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCT
T ss_pred eEeceEEE--ECCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEECcccccccCChhhCCEEEEeCCCccCC
Confidence 67778877 999999999999999999999999999994 556666655433 346899999976653
No 25
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=98.74 E-value=3.8e-09 Score=116.31 Aligned_cols=62 Identities=19% Similarity=0.048 Sum_probs=51.8
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc-----ccccceeeecC
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII-----KDSIRDCFVTG 487 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL-----rdsIr~VFQTG 487 (1182)
..+..++++ +++|++++|+|||||||||||++|+|+++ |.+|.+.+++..+ +..|+++||..
T Consensus 21 ~vl~~vsl~--i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~~~~~~~~~~~i~~v~q~~ 87 (266)
T 2yz2_A 21 KALENVSLV--INEGECLLVAGNTGSGKSTLLQIVAGLIE--PTSGDVLYDGERKKGYEIRRNIGIAFQYP 87 (266)
T ss_dssp EEEEEEEEE--ECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCHHHHGGGEEEECSSG
T ss_pred ceeeeeEEE--EcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEECchHHhhhhEEEEeccc
Confidence 467778877 99999999999999999999999999998 4567777766543 45689999974
No 26
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.74 E-value=5.1e-09 Score=112.77 Aligned_cols=62 Identities=15% Similarity=0.139 Sum_probs=52.2
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccccccccceeeecCcccc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIKDSIRDCFVTGKWKA 491 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeELrdsIr~VFQTGkw~~ 491 (1182)
+..+..++++ +++|++++|+|||||||||||++|+|+++ |.+|.+.+++ .|+++||...+..
T Consensus 21 ~~il~~vsl~--i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g-----~i~~v~q~~~~~~ 82 (229)
T 2pze_A 21 TPVLKDINFK--IERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG-----RISFCSQFSWIMP 82 (229)
T ss_dssp CCSEEEEEEE--EETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEECS-----CEEEECSSCCCCS
T ss_pred ceeeeeeEEE--EcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCccEEEECC-----EEEEEecCCcccC
Confidence 4567788888 99999999999999999999999999999 4567777765 5889999876554
No 27
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=98.73 E-value=3e-09 Score=121.75 Aligned_cols=65 Identities=12% Similarity=0.045 Sum_probs=54.0
Q ss_pred cccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc------ccccceeeecCcccc
Q psy5893 423 HVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII------KDSIRDCFVTGKWKA 491 (1182)
Q Consensus 423 ~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL------rdsIr~VFQTGkw~~ 491 (1182)
++..++++ +++|++++|+|||||||||||++|+|+++ |.+|.+.+++..+ ...|+++||...++.
T Consensus 15 ~l~~vsl~--i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~ 85 (348)
T 3d31_A 15 SLDNLSLK--VESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFP 85 (348)
T ss_dssp EEEEEEEE--ECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECTTSCHHHHTCEEECTTCCCCT
T ss_pred EEeeeEEE--EcCCCEEEEECCCCccHHHHHHHHHcCCC--CCCcEEEECCEECCCCchhhCcEEEEecCcccCC
Confidence 67777877 99999999999999999999999999999 4567777766544 346999999976653
No 28
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.72 E-value=4.7e-09 Score=115.75 Aligned_cols=65 Identities=18% Similarity=0.125 Sum_probs=52.9
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc--------ccccceeeecCcc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII--------KDSIRDCFVTGKW 489 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL--------rdsIr~VFQTGkw 489 (1182)
+..+..++++ +++|++++|+|||||||||||++|+|+++| .+|.+.+++.++ ...++++||....
T Consensus 24 ~~vL~~vsl~--i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~ 96 (266)
T 4g1u_C 24 QALINDVSLH--IASGEMVAIIGPNGAGKSTLLRLLTGYLSP--SHGECHLLGQNLNSWQPKALARTRAVMRQYSEL 96 (266)
T ss_dssp EEEEEEEEEE--EETTCEEEEECCTTSCHHHHHHHHTSSSCC--SSCEEEETTEETTTSCHHHHHHHEEEECSCCCC
T ss_pred eeEEEeeEEE--EcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEECCcCCHHHHhheEEEEecCCcc
Confidence 4567888888 999999999999999999999999999994 566666666543 3458888987654
No 29
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.71 E-value=4.1e-09 Score=117.00 Aligned_cols=64 Identities=14% Similarity=-0.037 Sum_probs=51.7
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc----------ccccceeeecCc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII----------KDSIRDCFVTGK 488 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL----------rdsIr~VFQTGk 488 (1182)
+..+..++++ +++|++++|+|||||||||||++|+|+++| .+|.+.+++..+ +..|+++||...
T Consensus 34 ~~vL~~isl~--i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~ 107 (279)
T 2ihy_A 34 KTILKKISWQ--IAKGDKWILYGLNGAGKTTLLNILNAYEPA--TSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLL 107 (279)
T ss_dssp EEEEEEEEEE--EETTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTBCCC---CCHHHHHTTEEEECHHHH
T ss_pred EEEEEeeeEE--EcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCeEEEECCEEcccccCCHHHHcCcEEEEEcCcc
Confidence 3567778887 999999999999999999999999999994 556666665433 346889999753
No 30
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=98.70 E-value=8e-09 Score=113.44 Aligned_cols=65 Identities=15% Similarity=0.058 Sum_probs=53.4
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc--------ccccceeeecCcccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII--------KDSIRDCFVTGKWKA 491 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL--------rdsIr~VFQTGkw~~ 491 (1182)
..+..++++ +++|++++|+|||||||||||++|+|+++ + +|.+.+++.++ +..|+++||...+..
T Consensus 34 ~vl~~vsl~--i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~ 106 (260)
T 2ghi_A 34 RTLKSINFF--IPSGTTCALVGHTGSGKSTIAKLLYRFYD--A-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN 106 (260)
T ss_dssp CSEEEEEEE--ECTTCEEEEECSTTSSHHHHHHHHTTSSC--C-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS
T ss_pred ceeEeeEEE--ECCCCEEEEECCCCCCHHHHHHHHhccCC--C-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc
Confidence 467777877 99999999999999999999999999997 4 57777766543 356899999876653
No 31
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=98.67 E-value=5.6e-09 Score=113.92 Aligned_cols=66 Identities=23% Similarity=0.074 Sum_probs=51.1
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHcc--CCCCCCcccccCcccccc---------cccceeeecCcc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKN--FTKTPLSVIKGPVTLIIK---------DSIRDCFVTGKW 489 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl--~~~~~~SGii~wdgeELr---------dsIr~VFQTGkw 489 (1182)
+..+..++++ +++|++++|+|||||||||||++|+|+ ++ |.+|.+.+++..+. ..++++||...+
T Consensus 16 ~~vl~~vsl~--i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~--p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~ 91 (250)
T 2d2e_A 16 ETILKGVNLV--VPKGEVHALMGPNGAGKSTLGKILAGDPEYT--VERGEILLDGENILELSPDERARKGLFLAFQYPVE 91 (250)
T ss_dssp EEEEEEEEEE--EETTCEEEEECSTTSSHHHHHHHHHTCTTCE--EEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-
T ss_pred EEEEeceEEE--EcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCEECCCCCHHHHHhCcEEEeccCCcc
Confidence 3467777877 999999999999999999999999998 55 45677777665432 236788888655
Q ss_pred c
Q psy5893 490 K 490 (1182)
Q Consensus 490 ~ 490 (1182)
.
T Consensus 92 ~ 92 (250)
T 2d2e_A 92 V 92 (250)
T ss_dssp C
T ss_pred c
Confidence 4
No 32
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.66 E-value=8.8e-09 Score=112.73 Aligned_cols=61 Identities=20% Similarity=0.067 Sum_probs=50.4
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccccccccceeeecCccc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIKDSIRDCFVTGKWK 490 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeELrdsIr~VFQTGkw~ 490 (1182)
+..+..++++ +++|++++|+|||||||||||++|+|+++| .+|.+. +...|+++||...+.
T Consensus 18 ~~vl~~isl~--i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~-----~~~~i~~v~q~~~~~ 78 (253)
T 2nq2_C 18 NFLFQQLNFD--LNKGDILAVLGQNGCGKSTLLDLLLGIHRP--IQGKIE-----VYQSIGFVPQFFSSP 78 (253)
T ss_dssp TEEEEEEEEE--EETTCEEEEECCSSSSHHHHHHHHTTSSCC--SEEEEE-----ECSCEEEECSCCCCS
T ss_pred CeEEEEEEEE--ECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEE-----EeccEEEEcCCCccC
Confidence 3567778887 999999999999999999999999999995 455554 346789999987554
No 33
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=98.65 E-value=8e-09 Score=113.84 Aligned_cols=68 Identities=21% Similarity=0.035 Sum_probs=52.4
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccccc---------cccceeeecCccc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIK---------DSIRDCFVTGKWK 490 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeELr---------dsIr~VFQTGkw~ 490 (1182)
+..+..++++ +++|++++|+|||||||||||++|+|++...|.+|.+.+++.++. ..|+++||...+.
T Consensus 33 ~~vl~~vsl~--i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~ 109 (267)
T 2zu0_C 33 KAILRGLSLD--VHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEI 109 (267)
T ss_dssp EEEEEEEEEE--ECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCC
T ss_pred EEEEEeeEEE--EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCcccc
Confidence 4567888888 999999999999999999999999999522245677777665442 2377889886544
No 34
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.65 E-value=1.1e-08 Score=111.06 Aligned_cols=63 Identities=16% Similarity=-0.005 Sum_probs=50.6
Q ss_pred cccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc------ccccceeeecCccc
Q psy5893 423 HVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII------KDSIRDCFVTGKWK 490 (1182)
Q Consensus 423 ~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL------rdsIr~VFQTGkw~ 490 (1182)
.+..++++ +++ ++++|+|||||||||||++|+|+++ |.+|.+.+++.++ +..|+++||...+.
T Consensus 14 ~l~~isl~--i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~ 82 (240)
T 2onk_A 14 FRLNVDFE--MGR-DYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITPLPPERRGIGFVPQDYALF 82 (240)
T ss_dssp EEEEEEEE--ECS-SEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCC
T ss_pred EEeeeEEE--ECC-EEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCchhhCcEEEEcCCCccC
Confidence 36777777 999 9999999999999999999999998 4566666666443 34688999986554
No 35
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=98.63 E-value=1.2e-08 Score=118.30 Aligned_cols=77 Identities=12% Similarity=0.015 Sum_probs=58.5
Q ss_pred eceeeeecc-cccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc--------cccc
Q psy5893 410 KFRRKEDIQ-AKKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII--------KDSI 480 (1182)
Q Consensus 410 ~~~~~~~~~-~~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL--------rdsI 480 (1182)
+-.+...+. ....++..++++ +++|++++|+|||||||||||++|+|+++ + +|.+.+++.++ +..|
T Consensus 22 ~~~l~~~y~~~~~~~L~~vsl~--i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~--~G~I~i~G~~i~~~~~~~~rr~i 96 (390)
T 3gd7_A 22 VKDLTAKYTEGGNAILENISFS--ISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T--EGEIQIDGVSWDSITLEQWRKAF 96 (390)
T ss_dssp EEEEEEESSSSSCCSEEEEEEE--ECTTCEEEEEESTTSSHHHHHHHHHTCSE-E--EEEEEESSCBTTSSCHHHHHHTE
T ss_pred EEEEEEEecCCCeEEeeceeEE--EcCCCEEEEECCCCChHHHHHHHHhCCCC-C--CeEEEECCEECCcCChHHHhCCE
Confidence 333444442 234577888888 99999999999999999999999999987 3 46666665543 4679
Q ss_pred ceeeecCcccc
Q psy5893 481 RDCFVTGKWKA 491 (1182)
Q Consensus 481 r~VFQTGkw~~ 491 (1182)
+++||+..++.
T Consensus 97 g~v~Q~~~lf~ 107 (390)
T 3gd7_A 97 GVIPQKVFIFS 107 (390)
T ss_dssp EEESCCCCCCS
T ss_pred EEEcCCcccCc
Confidence 99999987664
No 36
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=98.61 E-value=9.2e-09 Score=112.44 Aligned_cols=64 Identities=13% Similarity=-0.036 Sum_probs=51.6
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc--------ccccceeeecCccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII--------KDSIRDCFVTGKWK 490 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL--------rdsIr~VFQTGkw~ 490 (1182)
..+..++++ +++|++++|+|||||||||||++|+|+++| . |.+.+++..+ +..++++||.....
T Consensus 14 ~vl~~vsl~--i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p--~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~ 85 (249)
T 2qi9_C 14 TRLGPLSGE--VRAGEILHLVGPNGAGKSTLLARMAGMTSG--K-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPP 85 (249)
T ss_dssp TTEEEEEEE--EETTCEEEEECCTTSSHHHHHHHHTTSSCC--E-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCC
T ss_pred EEEeeeEEE--EcCCCEEEEECCCCCcHHHHHHHHhCCCCC--C-eEEEECCEECCcCCHHHHhceEEEECCCCccC
Confidence 456777777 999999999999999999999999999995 4 6666665543 34688999987554
No 37
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=98.57 E-value=2.2e-08 Score=111.83 Aligned_cols=62 Identities=15% Similarity=0.153 Sum_probs=51.8
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccccccccceeeecCcccc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIKDSIRDCFVTGKWKA 491 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeELrdsIr~VFQTGkw~~ 491 (1182)
+..+..++++ +++|++++|+|||||||||||++|+|+++ |.+|.+.+++ .|+++||...+..
T Consensus 51 ~~vl~~isl~--i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g-----~i~~v~Q~~~l~~ 112 (290)
T 2bbs_A 51 TPVLKDINFK--IERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG-----RISFCSQNSWIMP 112 (290)
T ss_dssp CCSEEEEEEE--ECTTCEEEEEESTTSSHHHHHHHHTTSSC--EEEEEEECCS-----CEEEECSSCCCCS
T ss_pred ceEEEeeEEE--EcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECC-----EEEEEeCCCccCc
Confidence 3567777887 99999999999999999999999999998 4567777665 5899999876544
No 38
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.54 E-value=4e-08 Score=119.76 Aligned_cols=85 Identities=19% Similarity=0.094 Sum_probs=63.9
Q ss_pred eceeeeecccccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc--------ccccc
Q psy5893 410 KFRRKEDIQAKKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII--------KDSIR 481 (1182)
Q Consensus 410 ~~~~~~~~~~~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL--------rdsIr 481 (1182)
+-.+...+......+.+++++ +++|++++|+||||||||||+++|+|+++| .+|.+.+++.++ +..|+
T Consensus 357 ~~~v~~~y~~~~~~l~~isl~--i~~G~~~~ivG~sGsGKSTll~~l~g~~~p--~~G~i~~~g~~i~~~~~~~~r~~i~ 432 (598)
T 3qf4_B 357 FKNVWFSYDKKKPVLKDITFH--IKPGQKVALVGPTGSGKTTIVNLLMRFYDV--DRGQILVDGIDIRKIKRSSLRSSIG 432 (598)
T ss_dssp EEEEECCSSSSSCSCCSEEEE--CCTTCEEEEECCTTSSTTHHHHHHTTSSCC--SEEEEEETTEEGGGSCHHHHHHHEE
T ss_pred EEEEEEECCCCCccccceEEE--EcCCCEEEEECCCCCcHHHHHHHHhcCcCC--CCeEEEECCEEhhhCCHHHHHhceE
Confidence 344444444344577778877 999999999999999999999999999994 566666666544 45799
Q ss_pred eeeecCcccccchHHHh
Q psy5893 482 DCFVTGKWKASEDASEL 498 (1182)
Q Consensus 482 ~VFQTGkw~~~~~~~~l 498 (1182)
++||+..++...-.+++
T Consensus 433 ~v~Q~~~lf~~tv~eni 449 (598)
T 3qf4_B 433 IVLQDTILFSTTVKENL 449 (598)
T ss_dssp EECTTCCCCSSBHHHHH
T ss_pred EEeCCCccccccHHHHH
Confidence 99999877654444444
No 39
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.51 E-value=6.2e-08 Score=117.67 Aligned_cols=84 Identities=18% Similarity=0.025 Sum_probs=61.5
Q ss_pred eceeeeecccc-cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccc--------ccccc
Q psy5893 410 KFRRKEDIQAK-KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLI--------IKDSI 480 (1182)
Q Consensus 410 ~~~~~~~~~~~-k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeE--------LrdsI 480 (1182)
+-.+...+... +..+..++++ +++|++++|+||||||||||+++|+|+++| .+|.+.+++.+ ++..|
T Consensus 344 ~~~v~~~y~~~~~~~l~~i~l~--i~~G~~~~ivG~sGsGKSTll~~l~g~~~p--~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b5x_A 344 VKDVTFTYQGKEKPALSHVSFS--IPQGKTVALVGRSGSGKSTIANLFTRFYDV--DSGSICLDGHDVRDYKLTNLRRHF 419 (582)
T ss_pred EEEEEEEcCCCCccccccceEE--ECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCCEEEECCEEhhhCCHHHHhcCe
Confidence 44445554322 4567777777 999999999999999999999999999995 45666665543 35679
Q ss_pred ceeeecCcccccchHHH
Q psy5893 481 RDCFVTGKWKASEDASE 497 (1182)
Q Consensus 481 r~VFQTGkw~~~~~~~~ 497 (1182)
+++||+..++...-.++
T Consensus 420 ~~v~Q~~~l~~~tv~en 436 (582)
T 3b5x_A 420 ALVSQNVHLFNDTIANN 436 (582)
T ss_pred EEEcCCCccccccHHHH
Confidence 99999987664433333
No 40
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.50 E-value=4e-08 Score=108.24 Aligned_cols=63 Identities=14% Similarity=0.054 Sum_probs=50.3
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc-----ccccc-eeeecCcc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII-----KDSIR-DCFVTGKW 489 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL-----rdsIr-~VFQTGkw 489 (1182)
+..+..++++ ++ |++++|+|||||||||||++|+|++ |+ +|.+.+++..+ +..++ ++||...+
T Consensus 18 ~~il~~vsl~--i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~--~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l 86 (263)
T 2pjz_A 18 RFSLENINLE--VN-GEKVIILGPNGSGKTTLLRAISGLL-PY--SGNIFINGMEVRKIRNYIRYSTNLPEAYEI 86 (263)
T ss_dssp EEEEEEEEEE--EC-SSEEEEECCTTSSHHHHHHHHTTSS-CC--EEEEEETTEEGGGCSCCTTEEECCGGGSCT
T ss_pred ceeEEeeeEE--EC-CEEEEEECCCCCCHHHHHHHHhCCC-CC--CcEEEECCEECcchHHhhheEEEeCCCCcc
Confidence 3467778887 99 9999999999999999999999999 65 45566655433 34688 89998765
No 41
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.50 E-value=4.7e-08 Score=118.63 Aligned_cols=86 Identities=16% Similarity=0.007 Sum_probs=64.0
Q ss_pred eceeeeeccc-ccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc--------cccc
Q psy5893 410 KFRRKEDIQA-KKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII--------KDSI 480 (1182)
Q Consensus 410 ~~~~~~~~~~-~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL--------rdsI 480 (1182)
+-.+...+.. ....+.+++++ +++|++++|+||||||||||+++|+|+++ |.+|.+.+++.++ +..+
T Consensus 342 ~~~v~~~y~~~~~~~l~~isl~--i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~~~~~~~~~~r~~i 417 (578)
T 4a82_A 342 IDHVSFQYNDNEAPILKDINLS--IEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGHNIKDFLTGSLRNQI 417 (578)
T ss_dssp EEEEEECSCSSSCCSEEEEEEE--ECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETTEEGGGSCHHHHHHTE
T ss_pred EEEEEEEcCCCCCcceeeeEEE--ECCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEEhhhCCHHHHhhhe
Confidence 3344444433 24567888888 99999999999999999999999999999 4566676666544 4579
Q ss_pred ceeeecCcccccchHHHhh
Q psy5893 481 RDCFVTGKWKASEDASELL 499 (1182)
Q Consensus 481 r~VFQTGkw~~~~~~~~ll 499 (1182)
+++||+..++...-.+++.
T Consensus 418 ~~v~Q~~~l~~~tv~eni~ 436 (578)
T 4a82_A 418 GLVQQDNILFSDTVKENIL 436 (578)
T ss_dssp EEECSSCCCCSSBHHHHHG
T ss_pred EEEeCCCccCcccHHHHHh
Confidence 9999998776554445443
No 42
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.49 E-value=6.3e-08 Score=117.56 Aligned_cols=85 Identities=12% Similarity=0.002 Sum_probs=62.8
Q ss_pred eceeeeecccc-cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc--------cccc
Q psy5893 410 KFRRKEDIQAK-KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII--------KDSI 480 (1182)
Q Consensus 410 ~~~~~~~~~~~-k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL--------rdsI 480 (1182)
+-.+...+... +..+..++++ +++|++++|+||||||||||+++|+|+++| .+|.+.+++.++ +..|
T Consensus 344 ~~~v~~~y~~~~~~~l~~v~~~--i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p--~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b60_A 344 FRNVTFTYPGREVPALRNINLK--IPAGKTVALVGRSGSGKSTIASLITRFYDI--DEGHILMDGHDLREYTLASLRNQV 419 (582)
T ss_dssp EEEEEECSSSSSCCSEEEEEEE--ECTTCEEEEEECTTSSHHHHHHHHTTTTCC--SEEEEEETTEETTTBCHHHHHHTE
T ss_pred EEEEEEEcCCCCCccccceeEE--EcCCCEEEEECCCCCCHHHHHHHHhhccCC--CCCeEEECCEEccccCHHHHHhhC
Confidence 44445555322 4567788888 999999999999999999999999999994 566666665443 4579
Q ss_pred ceeeecCcccccchHHHh
Q psy5893 481 RDCFVTGKWKASEDASEL 498 (1182)
Q Consensus 481 r~VFQTGkw~~~~~~~~l 498 (1182)
+++||+..++...-.+++
T Consensus 420 ~~v~Q~~~l~~~tv~eni 437 (582)
T 3b60_A 420 ALVSQNVHLFNDTVANNI 437 (582)
T ss_dssp EEECSSCCCCSSBHHHHH
T ss_pred eEEccCCcCCCCCHHHHH
Confidence 999999877654334443
No 43
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=98.44 E-value=8.2e-08 Score=116.86 Aligned_cols=85 Identities=20% Similarity=0.142 Sum_probs=62.4
Q ss_pred eceeeeecccc--cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc--------ccc
Q psy5893 410 KFRRKEDIQAK--KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII--------KDS 479 (1182)
Q Consensus 410 ~~~~~~~~~~~--k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL--------rds 479 (1182)
+-.+...+... ...+..++++ +++|++++|+||||||||||+++|+|+++ |.+|.+.+++.++ +..
T Consensus 344 ~~~v~~~y~~~~~~~vl~~isl~--i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--p~~G~i~~~g~~i~~~~~~~~~~~ 419 (595)
T 2yl4_A 344 FKNVHFAYPARPEVPIFQDFSLS--IPSGSVTALVGPSGSGKSTVLSLLLRLYD--PASGTISLDGHDIRQLNPVWLRSK 419 (595)
T ss_dssp EEEEEEECSSCTTSEEEEEEEEE--ECTTCEEEEECCTTSSSTHHHHHHTTSSC--CSEEEEEETTEETTTBCHHHHHHS
T ss_pred EEEEEEEeCCCCCCccccceEEE--EcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCcEEEECCEEhhhCCHHHHHhc
Confidence 34444444321 3467778887 99999999999999999999999999999 4566666666443 457
Q ss_pred cceeeecCcccccchHHHh
Q psy5893 480 IRDCFVTGKWKASEDASEL 498 (1182)
Q Consensus 480 Ir~VFQTGkw~~~~~~~~l 498 (1182)
|+++||+..++...-.+++
T Consensus 420 i~~v~Q~~~l~~~tv~eni 438 (595)
T 2yl4_A 420 IGTVSQEPILFSCSIAENI 438 (595)
T ss_dssp EEEECSSCCCCSSBHHHHH
T ss_pred eEEEccCCcccCCCHHHHH
Confidence 9999999877654334444
No 44
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.44 E-value=7.8e-08 Score=117.02 Aligned_cols=85 Identities=16% Similarity=0.040 Sum_probs=63.7
Q ss_pred eceeeeeccc-ccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc--------cccc
Q psy5893 410 KFRRKEDIQA-KKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII--------KDSI 480 (1182)
Q Consensus 410 ~~~~~~~~~~-~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL--------rdsI 480 (1182)
+-.+...+.. ....+..++++ +++|++++|+||||||||||+++|+|+++| .+|.+.+++.++ +..|
T Consensus 344 ~~~v~~~y~~~~~~~l~~isl~--i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~--~~G~i~i~g~~i~~~~~~~~r~~i 419 (587)
T 3qf4_A 344 FENVEFRYFENTDPVLSGVNFS--VKPGSLVAVLGETGSGKSTLMNLIPRLIDP--ERGRVEVDELDVRTVKLKDLRGHI 419 (587)
T ss_dssp EEEEEECSSSSSCCSEEEEEEE--ECTTCEEEEECSSSSSHHHHHHTTTTSSCC--SEEEEEESSSBGGGBCHHHHHHHE
T ss_pred EEEEEEEcCCCCCcceeceEEE--EcCCCEEEEECCCCCCHHHHHHHHhCCccC--CCcEEEECCEEcccCCHHHHHhhe
Confidence 4444444432 34577888888 999999999999999999999999999994 566666665543 5679
Q ss_pred ceeeecCcccccchHHHh
Q psy5893 481 RDCFVTGKWKASEDASEL 498 (1182)
Q Consensus 481 r~VFQTGkw~~~~~~~~l 498 (1182)
++++|+..++...-.+++
T Consensus 420 ~~v~Q~~~lf~~tv~eni 437 (587)
T 3qf4_A 420 SAVPQETVLFSGTIKENL 437 (587)
T ss_dssp EEECSSCCCCSEEHHHHH
T ss_pred EEECCCCcCcCccHHHHH
Confidence 999999877754444444
No 45
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.39 E-value=1.1e-07 Score=96.96 Aligned_cols=63 Identities=14% Similarity=0.075 Sum_probs=46.0
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccccc---ccceeeecCcc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIKD---SIRDCFVTGKW 489 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeELrd---sIr~VFQTGkw 489 (1182)
.++..++++ +++|++++|+||||||||||+++|+|++ +. +|.+.+++..+.. ..+.+||...+
T Consensus 21 ~~l~~vsl~--i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~--~G~V~~~g~~i~~~~~~~~~~~q~~~l 86 (158)
T 1htw_A 21 FAEILLKLH--TEKAIMVYLNGDLGAGKTTLTRGMLQGI-GH--QGNVKSPTYTLVEEYNIAGKMIYHFDL 86 (158)
T ss_dssp HHHHHHHHC--CSSCEEEEEECSTTSSHHHHHHHHHHHT-TC--CSCCCCCTTTCEEEEEETTEEEEEEEC
T ss_pred HHHhccccc--cCCCCEEEEECCCCCCHHHHHHHHHHhC-CC--CCeEEECCEeeeeeccCCCcceecccc
Confidence 356667777 9999999999999999999999999999 54 4556665554421 12356776543
No 46
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.37 E-value=1.4e-07 Score=100.35 Aligned_cols=57 Identities=21% Similarity=0.224 Sum_probs=36.3
Q ss_pred ccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccc---------ccccccceeeecCc
Q psy5893 424 VPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTL---------IIKDSIRDCFVTGK 488 (1182)
Q Consensus 424 i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdge---------ELrdsIr~VFQTGk 488 (1182)
+..++++ +++|++++|+||||||||||+++|+|+++ |. +.+ +. .....++++||+..
T Consensus 13 l~~isl~--i~~G~~~~lvGpsGsGKSTLl~~L~g~~p---G~--i~~-g~~~~~~~~~~~~~~~i~~~~~~~~ 78 (218)
T 1z6g_A 13 GLVPRGS--MNNIYPLVICGPSGVGKGTLIKKLLNEFP---NY--FYF-SVSCTTRKKREKEKEGVDYYFIDKT 78 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHST---TT--EEE-CCCEECSCCCSSCCBTTTBEECCHH
T ss_pred ccCCcee--cCCCCEEEEECCCCCCHHHHHHHHHhhCC---Cc--EEE-eecccCCCCCcccccCCeEEECCHH
Confidence 4455555 99999999999999999999999999983 32 222 11 12356778888754
No 47
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.27 E-value=4.2e-07 Score=95.41 Aligned_cols=56 Identities=29% Similarity=0.367 Sum_probs=37.6
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcc----cccccccceeeecCcc
Q psy5893 432 LEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVT----LIIKDSIRDCFVTGKW 489 (1182)
Q Consensus 432 ~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdg----eELrdsIr~VFQTGkw 489 (1182)
.+++|++++|+||||||||||+++|+|+++. ......... ......++++||+...
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~--i~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 75 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIPN--LHFSVSATTRAPRPGEVDGVDYHFIDPTR 75 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHSTT--CEECCCEESSCCCTTCCBTTTBEECCHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCCc--eEEcccccccCCcccccCCCeeEecCHHH
Confidence 4899999999999999999999999999852 111111111 1124568888987543
No 48
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.26 E-value=4.4e-07 Score=97.24 Aligned_cols=56 Identities=23% Similarity=0.180 Sum_probs=40.6
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc----ccccceeeecCc
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII----KDSIRDCFVTGK 488 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL----rdsIr~VFQTGk 488 (1182)
.++|++++|+||||||||||+++|+|+++|++..+.+.+.+... ...+.++||+..
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~ 72 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHD 72 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHH
Confidence 68999999999999999999999999998422344444444322 346788888753
No 49
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.26 E-value=3.2e-07 Score=121.08 Aligned_cols=88 Identities=15% Similarity=0.037 Sum_probs=68.3
Q ss_pred ceeceeeeeccc--ccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccc--------ccc
Q psy5893 408 ERKFRRKEDIQA--KKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTL--------IIK 477 (1182)
Q Consensus 408 ~~~~~~~~~~~~--~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdge--------ELr 477 (1182)
+.+-.+...|.. ...++..++++ +++|+.+|||||||||||||+++|.|++.| .+|.+.+++. .++
T Consensus 1077 I~f~nVsf~Y~~~~~~~VL~~isl~--I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p--~~G~I~iDG~di~~i~~~~lR 1152 (1321)
T 4f4c_A 1077 VIFKNVRFAYPERPEIEILKGLSFS--VEPGQTLALVGPSGCGKSTVVALLERFYDT--LGGEIFIDGSEIKTLNPEHTR 1152 (1321)
T ss_dssp EEEEEEEECCTTSCSSCSEEEEEEE--ECTTCEEEEECSTTSSTTSHHHHHTTSSCC--SSSEEEETTEETTTBCHHHHH
T ss_pred EEEEEEEEeCCCCCCCccccceeEE--ECCCCEEEEECCCCChHHHHHHHHhcCccC--CCCEEEECCEEhhhCCHHHHH
Confidence 345566666643 23467888888 999999999999999999999999999995 4555555544 456
Q ss_pred cccceeeecCcccccchHHHhh
Q psy5893 478 DSIRDCFVTGKWKASEDASELL 499 (1182)
Q Consensus 478 dsIr~VFQTGkw~~~~~~~~ll 499 (1182)
..|+.++|+..++.+.-+++|+
T Consensus 1153 ~~i~~V~Qdp~LF~gTIreNI~ 1174 (1321)
T 4f4c_A 1153 SQIAIVSQEPTLFDCSIAENII 1174 (1321)
T ss_dssp TTEEEECSSCCCCSEEHHHHHS
T ss_pred hheEEECCCCEeeCccHHHHHh
Confidence 7899999999998876666654
No 50
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.24 E-value=1.6e-07 Score=99.99 Aligned_cols=52 Identities=13% Similarity=0.010 Sum_probs=37.3
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCc-----ccccccccceeeecC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPV-----TLIIKDSIRDCFVTG 487 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wd-----geELrdsIr~VFQTG 487 (1182)
+++|++++|+|||||||||||++|+|+ +|+.| .+.+. ....+..|+++||+.
T Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G--~I~~~~~~~~~~~~~~~ig~v~q~~ 75 (208)
T 3b85_A 19 IDTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSK--QVSRIILTRPAVEAGEKLGFLPGTL 75 (208)
T ss_dssp HHHCSEEEEECCTTSSTTHHHHHHHHH-HHHTT--SCSEEEEEECSCCTTCCCCSSCC--
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcC-CCcCC--eeeeEEecCCchhhhcceEEecCCH
Confidence 378999999999999999999999999 85544 33221 112345677777764
No 51
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.22 E-value=5.7e-07 Score=118.77 Aligned_cols=88 Identities=13% Similarity=0.047 Sum_probs=68.2
Q ss_pred eeceeeeeccc--ccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccc--------cccc
Q psy5893 409 RKFRRKEDIQA--KKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTL--------IIKD 478 (1182)
Q Consensus 409 ~~~~~~~~~~~--~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdge--------ELrd 478 (1182)
.+-.+...|.. ....+.+++++ +++|+++|||||||||||||+++|.|+++ |.+|.+.+++. .++.
T Consensus 417 ~~~nvsF~Y~~~~~~~vL~~isl~--i~~G~~vaivG~sGsGKSTll~ll~~~~~--~~~G~I~idG~~i~~~~~~~lr~ 492 (1321)
T 4f4c_A 417 TVENVHFTYPSRPDVPILRGMNLR--VNAGQTVALVGSSGCGKSTIISLLLRYYD--VLKGKITIDGVDVRDINLEFLRK 492 (1321)
T ss_dssp EEEEEEECCSSSTTSCSEEEEEEE--ECTTCEEEEEECSSSCHHHHHHHHTTSSC--CSEEEEEETTEETTTSCHHHHHH
T ss_pred EEEEeeeeCCCCCCCceeeceEEe--ecCCcEEEEEecCCCcHHHHHHHhccccc--cccCcccCCCccchhccHHHHhh
Confidence 35555655533 34567888888 99999999999999999999999999999 45666666554 3456
Q ss_pred ccceeeecCcccccchHHHhhh
Q psy5893 479 SIRDCFVTGKWKASEDASELLR 500 (1182)
Q Consensus 479 sIr~VFQTGkw~~~~~~~~ll~ 500 (1182)
.|++|+|+..++.+.-.++++-
T Consensus 493 ~i~~v~Q~~~Lf~~TI~eNI~~ 514 (1321)
T 4f4c_A 493 NVAVVSQEPALFNCTIEENISL 514 (1321)
T ss_dssp HEEEECSSCCCCSEEHHHHHHT
T ss_pred cccccCCcceeeCCchhHHHhh
Confidence 8999999998887766666654
No 52
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.18 E-value=7.9e-07 Score=117.11 Aligned_cols=86 Identities=15% Similarity=0.048 Sum_probs=64.3
Q ss_pred eceeeeeccc--ccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccccc--------ccc
Q psy5893 410 KFRRKEDIQA--KKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII--------KDS 479 (1182)
Q Consensus 410 ~~~~~~~~~~--~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeEL--------rds 479 (1182)
+-.+...|.. ....+.+++++ +++|+++|||||||||||||+++|+|+++| .+|.+.+++.++ +..
T Consensus 390 ~~~v~~~y~~~~~~~vL~~isl~--i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~--~~G~i~i~g~~i~~~~~~~~r~~ 465 (1284)
T 3g5u_A 390 FKNIHFSYPSRKEVQILKGLNLK--VKSGQTVALVGNSGCGKSTTVQLMQRLYDP--LDGMVSIDGQDIRTINVRYLREI 465 (1284)
T ss_dssp EEEEEECCSSTTSCCSEEEEEEE--ECTTCEEEEECCSSSSHHHHHHHTTTSSCC--SEEEEEETTEEGGGSCHHHHHHH
T ss_pred EEEEEEEcCCCCCCcceecceEE--EcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEHHhCCHHHHHhh
Confidence 4444555432 23567888887 999999999999999999999999999994 566666665543 457
Q ss_pred cceeeecCcccccchHHHhh
Q psy5893 480 IRDCFVTGKWKASEDASELL 499 (1182)
Q Consensus 480 Ir~VFQTGkw~~~~~~~~ll 499 (1182)
|++++|+..++...-.++++
T Consensus 466 i~~v~Q~~~l~~~ti~eNi~ 485 (1284)
T 3g5u_A 466 IGVVSQEPVLFATTIAENIR 485 (1284)
T ss_dssp EEEECSSCCCCSSCHHHHHH
T ss_pred eEEEcCCCccCCccHHHHHh
Confidence 99999998776554455544
No 53
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.14 E-value=1.7e-06 Score=114.08 Aligned_cols=73 Identities=12% Similarity=0.030 Sum_probs=57.4
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccc--------cccccceeeecCcccccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLI--------IKDSIRDCFVTGKWKASE 493 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeE--------LrdsIr~VFQTGkw~~~~ 493 (1182)
..+..++++ +++|+++|||||||||||||+++|+|+++| .+|.+.+++.+ ++..|++++|+..++...
T Consensus 1047 ~~l~~vsl~--i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p--~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~t 1122 (1284)
T 3g5u_A 1047 PVLQGLSLE--VKKGQTLALVGSSGCGKSTVVQLLERFYDP--MAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCS 1122 (1284)
T ss_dssp CSBSSCCEE--ECSSSEEEEECSSSTTHHHHHHHHTTSSCC--SEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSB
T ss_pred eeecceeEE--EcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCEEcccCCHHHHHhceEEECCCCcccccc
Confidence 456666666 999999999999999999999999999994 56666666554 356799999998776544
Q ss_pred hHHHh
Q psy5893 494 DASEL 498 (1182)
Q Consensus 494 ~~~~l 498 (1182)
-.++|
T Consensus 1123 i~eNi 1127 (1284)
T 3g5u_A 1123 IAENI 1127 (1284)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 54
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.11 E-value=1.8e-06 Score=89.18 Aligned_cols=29 Identities=24% Similarity=0.489 Sum_probs=26.7
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
+.+|++++|+||||||||||+++|+|+++
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 67899999999999999999999999975
No 55
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.11 E-value=1.9e-06 Score=103.90 Aligned_cols=39 Identities=26% Similarity=0.352 Sum_probs=33.7
Q ss_pred cCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCc
Q psy5893 427 VDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLS 466 (1182)
Q Consensus 427 vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~S 466 (1182)
.+++ .+.+|++++|||||||||||||++|+|+++|+.|.
T Consensus 39 ~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~ 77 (538)
T 1yqt_A 39 YRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCG 77 (538)
T ss_dssp ECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTT
T ss_pred cCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCc
Confidence 3444 59999999999999999999999999999966554
No 56
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.08 E-value=1.4e-06 Score=105.14 Aligned_cols=57 Identities=16% Similarity=0.009 Sum_probs=44.3
Q ss_pred ccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccccccccceeeecCcc
Q psy5893 424 VPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIKDSIRDCFVTGKW 489 (1182)
Q Consensus 424 i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeELrdsIr~VFQTGkw 489 (1182)
+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+ ...|+++||....
T Consensus 302 l~~~~~~--i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~i~~-----~~~i~~v~Q~~~~ 358 (538)
T 1yqt_A 302 LEVEPGE--IKKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKIEW-----DLTVAYKPQYIKA 358 (538)
T ss_dssp EEECCEE--EETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBCCCCC-----CCCEEEECSSCCC
T ss_pred EEeCccc--cCCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEE-----CceEEEEecCCcC
Confidence 3444444 899999999999999999999999999995 4455554 2358888887543
No 57
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.08 E-value=1.4e-06 Score=106.47 Aligned_cols=57 Identities=16% Similarity=0.010 Sum_probs=44.6
Q ss_pred ccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccccccccceeeecCcc
Q psy5893 424 VPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIKDSIRDCFVTGKW 489 (1182)
Q Consensus 424 i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeELrdsIr~VFQTGkw 489 (1182)
+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+ ...|+++||....
T Consensus 372 l~~~~~~--v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~I~~-----~~~i~~v~Q~~~~ 428 (607)
T 3bk7_A 372 LEVEPGE--IRKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKVEW-----DLTVAYKPQYIKA 428 (607)
T ss_dssp EEECCEE--EETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBSCCCC-----CCCEEEECSSCCC
T ss_pred EEecccc--cCCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEE-----eeEEEEEecCccC
Confidence 3444444 899999999999999999999999999995 4555554 2468889987643
No 58
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.04 E-value=2.2e-06 Score=92.41 Aligned_cols=56 Identities=13% Similarity=0.065 Sum_probs=34.7
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccccccccceeeec
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIKDSIRDCFVT 486 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeELrdsIr~VFQT 486 (1182)
+.++..++++ +++|.++||+||||||||||+++|+|++. .+.++ .....++.+++.
T Consensus 12 ~~~l~~isl~--i~~g~iigI~G~~GsGKSTl~k~L~~~lG------~~~~~--~~~~~i~~v~~d 67 (245)
T 2jeo_A 12 DLGTENLYFQ--SMRPFLIGVSGGTASGKSTVCEKIMELLG------QNEVE--QRQRKVVILSQD 67 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHHT------GGGSC--GGGCSEEEEEGG
T ss_pred ceeecceecc--CCCCEEEEEECCCCCCHHHHHHHHHHHhc------hhccc--ccCCceEEEeCC
Confidence 3456677776 99999999999999999999999999762 22222 344556667665
No 59
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.01 E-value=1.1e-06 Score=111.88 Aligned_cols=60 Identities=23% Similarity=0.154 Sum_probs=47.2
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccccccccceeeecC
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIKDSIRDCFVTG 487 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeELrdsIr~VFQTG 487 (1182)
+..+..++++ +.+|++++|+|||||||||||++|+|+++| .+|.+.+.+. ..|++++|..
T Consensus 686 ~~iL~dVSl~--I~~GeivaIiGpNGSGKSTLLklLaGll~P--~sG~I~~~~~---~~I~yv~Q~~ 745 (986)
T 2iw3_A 686 KPQITDINFQ--CSLSSRIAVIGPNGAGKSTLINVLTGELLP--TSGEVYTHEN---CRIAYIKQHA 745 (986)
T ss_dssp SCSEEEEEEE--EETTCEEEECSCCCHHHHHHHHHHTTSSCC--SEEEEEECTT---CCEEEECHHH
T ss_pred ceeeeccEEE--EcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEEcCc---cceEeeccch
Confidence 3467777777 999999999999999999999999999994 5566666532 1466666653
No 60
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.01 E-value=3.3e-06 Score=103.19 Aligned_cols=35 Identities=26% Similarity=0.424 Sum_probs=32.1
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCc
Q psy5893 432 LEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLS 466 (1182)
Q Consensus 432 ~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~S 466 (1182)
.+.+|++++|+|||||||||||++|+|++.|+.|.
T Consensus 113 ~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~ 147 (607)
T 3bk7_A 113 IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCE 147 (607)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTT
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCc
Confidence 58999999999999999999999999999966554
No 61
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.00 E-value=2.1e-06 Score=102.10 Aligned_cols=49 Identities=12% Similarity=0.023 Sum_probs=40.0
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLI 475 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeE 475 (1182)
+++..++++ +++ ++++|+|||||||||||++|+|+++| .+|.+.|.+..
T Consensus 18 ~~l~~vsl~--i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~ 66 (483)
T 3euj_A 18 NGFFARTFD--FDE-LVTTLSGGNGAGKSTTMAGFVTALIP--DLTLLNFRNTT 66 (483)
T ss_dssp TTEEEEEEE--CCS-SEEEEECCTTSSHHHHHHHHHHHHCC--CTTTCCCCCTT
T ss_pred ccccceEEE--Ecc-ceEEEECCCCCcHHHHHHHHhcCCCC--CCCEEEECCEE
Confidence 456677777 888 99999999999999999999999994 45556665543
No 62
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.99 E-value=2.9e-06 Score=102.38 Aligned_cols=36 Identities=22% Similarity=0.339 Sum_probs=31.7
Q ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCc
Q psy5893 431 PLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLS 466 (1182)
Q Consensus 431 ~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~S 466 (1182)
+..++|+++||||||||||||||++|+|++.|+.|.
T Consensus 20 ~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~ 55 (538)
T 3ozx_A 20 PTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGD 55 (538)
T ss_dssp CCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTC
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCc
Confidence 356899999999999999999999999999965443
No 63
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.98 E-value=3e-06 Score=95.52 Aligned_cols=47 Identities=26% Similarity=0.316 Sum_probs=38.9
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccccccccceeeecCccc
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIKDSIRDCFVTGKWK 490 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeELrdsIr~VFQTGkw~ 490 (1182)
+.+|+++||+||||||||||+++|+|++.+..|. ..++.+||++...
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~-----------~~v~~v~qd~~~~ 133 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH-----------PRVDLVTTDGFLY 133 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC-----------CCEEEEEGGGGBC
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCC-----------CeEEEEecCccCC
Confidence 7899999999999999999999999999854221 4577888887654
No 64
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.97 E-value=1.9e-06 Score=88.06 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=23.0
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHH
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLI 457 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~ 457 (1182)
+++|++++|+||||||||||++++.
T Consensus 6 i~~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHc
Confidence 8899999999999999999999643
No 65
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.97 E-value=2.2e-06 Score=100.89 Aligned_cols=54 Identities=13% Similarity=0.118 Sum_probs=41.8
Q ss_pred ecccccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccc
Q psy5893 416 DIQAKKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTL 474 (1182)
Q Consensus 416 ~~~~~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdge 474 (1182)
.+.+...+++.+ ++ +.+|++++|+|||||||||||++|+|+..+ ..|.+.+.++
T Consensus 140 ~~~tg~~vld~v-l~--i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~--~~G~i~~~G~ 193 (438)
T 2dpy_A 140 VLDTGVRAINAL-LT--VGRGQRMGLFAGSGVGKSVLLGMMARYTRA--DVIVVGLIGE 193 (438)
T ss_dssp BCCCSCHHHHHH-SC--CBTTCEEEEEECTTSSHHHHHHHHHHHSCC--SEEEEEEESC
T ss_pred ecCCCceEEeee-EE--ecCCCEEEEECCCCCCHHHHHHHHhcccCC--CeEEEEEece
Confidence 333334567777 66 999999999999999999999999999984 4555555444
No 66
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.96 E-value=4.6e-06 Score=101.98 Aligned_cols=37 Identities=27% Similarity=0.340 Sum_probs=32.4
Q ss_pred CCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCc
Q psy5893 430 TPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLS 466 (1182)
Q Consensus 430 ~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~S 466 (1182)
.+.+.+|++++|||||||||||||++|+|++.|+.|.
T Consensus 97 l~~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~ 133 (608)
T 3j16_B 97 LPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGR 133 (608)
T ss_dssp CCCCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTT
T ss_pred CCCCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCce
Confidence 3358999999999999999999999999999965543
No 67
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.95 E-value=1.8e-06 Score=102.32 Aligned_cols=57 Identities=19% Similarity=0.035 Sum_probs=44.9
Q ss_pred cCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcc-c-ccCcccccccccceeeecCc
Q psy5893 427 VDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSV-I-KGPVTLIIKDSIRDCFVTGK 488 (1182)
Q Consensus 427 vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SG-i-i~wdgeELrdsIr~VFQTGk 488 (1182)
++++ +.+|++++|+|||||||||||++|+|++.+ ..| . +.+++ +.+..++++||+..
T Consensus 131 vsl~--i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p--~~G~~pI~vdg-~~~~~i~~vpq~~~ 189 (460)
T 2npi_A 131 IRMS--NFEGPRVVIVGGSQTGKTSLSRTLCSYALK--FNAYQPLYINL-DPQQPIFTVPGCIS 189 (460)
T ss_dssp HHHH--SSSCCCEEEEESTTSSHHHHHHHHHHTTHH--HHCCCCEEEEC-CTTSCSSSCSSCCE
T ss_pred CceE--eCCCCEEEEECCCCCCHHHHHHHHhCcccc--cCCceeEEEcC-CccCCeeeeccchh
Confidence 4444 889999999999999999999999999984 345 4 55554 34567888888763
No 68
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.95 E-value=3e-06 Score=102.24 Aligned_cols=49 Identities=18% Similarity=0.203 Sum_probs=38.6
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccccccccceeeec
Q psy5893 432 LEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIKDSIRDCFVT 486 (1182)
Q Consensus 432 ~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeELrdsIr~VFQT 486 (1182)
.+++|++++|+|||||||||||++|+|+++| .+|.+.+.+. .+++++|.
T Consensus 290 ~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~~~----~i~~~~q~ 338 (538)
T 3ozx_A 290 EAKEGEIIGILGPNGIGKTTFARILVGEITA--DEGSVTPEKQ----ILSYKPQR 338 (538)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SBCCEESSCC----CEEEECSS
T ss_pred eECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCe----eeEeechh
Confidence 3899999999999999999999999999995 4555554432 45566654
No 69
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.95 E-value=1.7e-06 Score=90.69 Aligned_cols=34 Identities=21% Similarity=0.151 Sum_probs=29.6
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCC
Q psy5893 432 LEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPL 465 (1182)
Q Consensus 432 ~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~ 465 (1182)
-+++|++++|+||||||||||+++|+|++.+.++
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~ 54 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPE 54 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGG
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccc
Confidence 3789999999999999999999999997664343
No 70
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.93 E-value=3e-06 Score=90.13 Aligned_cols=37 Identities=16% Similarity=0.230 Sum_probs=22.1
Q ss_pred cccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHH-ccCC
Q psy5893 423 HVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLI-KNFT 461 (1182)
Q Consensus 423 ~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~-Gl~~ 461 (1182)
+...++++ +++|++++|+||||||||||+++|+ |+++
T Consensus 16 ~~~~~sl~--v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 16 TQGPGSML--KSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp ------CC--EECCCEEEEECSCC----CHHHHHHC----
T ss_pred ccCCCCcc--cCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 34556666 9999999999999999999999999 9985
No 71
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.93 E-value=1.9e-06 Score=100.72 Aligned_cols=61 Identities=16% Similarity=0.042 Sum_probs=44.6
Q ss_pred ccccccCCCCCCCCCc--------------------EEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccccccccc
Q psy5893 422 HHVPQVDRTPLEPPPI--------------------VVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIKDSIR 481 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~Ge--------------------ivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeELrdsIr 481 (1182)
..+..++++ +++|+ +++|+|||||||||||++|+|++++ .+|.+.+.+.+... .+
T Consensus 37 ~~l~~is~~--i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p--~~GsI~~~g~~~t~-~~ 111 (413)
T 1tq4_A 37 EILNLIELR--MRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNE--EEGAAKTGVVEVTM-ER 111 (413)
T ss_dssp HHHHHHHHH--HHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTT--STTSCCCCC----C-CC
T ss_pred HHhhhccce--ecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCc--cCceEEECCeecce-eE
Confidence 356667776 89999 9999999999999999999999984 45556565544322 26
Q ss_pred eeeecC
Q psy5893 482 DCFVTG 487 (1182)
Q Consensus 482 ~VFQTG 487 (1182)
++||..
T Consensus 112 ~v~q~~ 117 (413)
T 1tq4_A 112 HPYKHP 117 (413)
T ss_dssp EEEECS
T ss_pred Eecccc
Confidence 677763
No 72
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.90 E-value=4.1e-06 Score=93.96 Aligned_cols=40 Identities=20% Similarity=0.144 Sum_probs=33.2
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcc
Q psy5893 432 LEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVT 473 (1182)
Q Consensus 432 ~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdg 473 (1182)
.+.+|++++||||||||||||+++|+|++.++ .|.+.+.+
T Consensus 96 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~--~g~V~l~g 135 (302)
T 3b9q_A 96 GFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE--GTKVLMAA 135 (302)
T ss_dssp CSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT--TCCEEEEC
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc--CCeEEEEe
Confidence 38899999999999999999999999999854 34444433
No 73
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.90 E-value=2.6e-06 Score=95.90 Aligned_cols=37 Identities=30% Similarity=0.433 Sum_probs=33.9
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
.++..++++ +++|++++|+|||||||||||++|+|++
T Consensus 114 ~vL~~vsl~--i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 114 NALKLWLKG--IPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHHHHHT--CTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hhhccceEE--ecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 456777777 9999999999999999999999999998
No 74
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.85 E-value=4.5e-06 Score=87.61 Aligned_cols=30 Identities=37% Similarity=0.504 Sum_probs=28.1
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccCCC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNFTK 462 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~ 462 (1182)
.++|++++|+||||||||||+++|+|++.+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 468999999999999999999999999984
No 75
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.85 E-value=3.6e-06 Score=96.55 Aligned_cols=58 Identities=16% Similarity=0.204 Sum_probs=41.7
Q ss_pred cccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccc------ccccccceee-ec
Q psy5893 425 PQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTL------IIKDSIRDCF-VT 486 (1182)
Q Consensus 425 ~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdge------ELrdsIr~VF-QT 486 (1182)
..+++. +++|++++|+|||||||||||++|+|+++++ .|.+.+.+. .....++.+| |.
T Consensus 166 ~~l~~~--i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~--~g~I~ie~~~e~~~~~~~~~v~~v~~q~ 230 (361)
T 2gza_A 166 SFLRRA--VQLERVIVVAGETGSGKTTLMKALMQEIPFD--QRLITIEDVPELFLPDHPNHVHLFYPSE 230 (361)
T ss_dssp HHHHHH--HHTTCCEEEEESSSSCHHHHHHHHHTTSCTT--SCEEEEESSSCCCCTTCSSEEEEECC--
T ss_pred HHHHHH--HhcCCEEEEECCCCCCHHHHHHHHHhcCCCC--ceEEEECCccccCccccCCEEEEeecCc
Confidence 455555 8999999999999999999999999999954 444444321 1334566666 44
No 76
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.84 E-value=5.6e-06 Score=91.36 Aligned_cols=49 Identities=24% Similarity=0.231 Sum_probs=29.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccc-----cccccceeeecCc
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLI-----IKDSIRDCFVTGK 488 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeE-----LrdsIr~VFQTGk 488 (1182)
.++|||||||||||||++|+|+..++ +|.+.+.+.. ....++++||...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~--~G~i~~~g~~i~~~~~~~~i~~v~q~~~ 57 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR--KASSWNREEKIPKTVEIKAIGHVIEEGG 57 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC---
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC--CCccccCCcccCcceeeeeeEEEeecCC
Confidence 48999999999999999999999854 4544444432 2356777888654
No 77
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.83 E-value=5.9e-06 Score=86.46 Aligned_cols=28 Identities=36% Similarity=0.597 Sum_probs=24.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 434 PPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 434 ~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
++|.+++|+||||||||||+++|+|+++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5789999999999999999999999875
No 78
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.82 E-value=5.1e-06 Score=95.02 Aligned_cols=45 Identities=16% Similarity=0.123 Sum_probs=37.0
Q ss_pred eecccccccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCC
Q psy5893 415 EDIQAKKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTK 462 (1182)
Q Consensus 415 ~~~~~~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~ 462 (1182)
..+.++..+++.+ ++ +.+|++++|+|||||||||||++|+|+..+
T Consensus 53 ~~~~tg~~ald~l-l~--i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 53 QPFILGVRAIDGL-LT--CGIGQRIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp SEECCSCHHHHHH-SC--EETTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred eecCCCCEEEEee-ee--ecCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3333344566666 66 999999999999999999999999999984
No 79
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.81 E-value=6.8e-06 Score=96.34 Aligned_cols=61 Identities=16% Similarity=0.093 Sum_probs=40.0
Q ss_pred ccccCCCCCCCCCcE--EEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccccccccceeeecCc
Q psy5893 424 VPQVDRTPLEPPPIV--VAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIKDSIRDCFVTGK 488 (1182)
Q Consensus 424 i~~vd~~~~i~~Gei--vaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeELrdsIr~VFQTGk 488 (1182)
+..++++ +++|++ ++|||||||||||||++|+|+.- .+..............++++||...
T Consensus 30 L~~vsl~--i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l--~g~~~~~~~~~~~~~~i~~v~Q~~~ 92 (427)
T 2qag_B 30 DQLVNKS--VSQGFCFNILCVGETGLGKSTLMDTLFNTKF--EGEPATHTQPGVQLQSNTYDLQESN 92 (427)
T ss_dssp HHHHHHS--CC-CCEEEEEEECSTTSSSHHHHHHHHTSCC---------CCSSCEEEEEEEEEEC--
T ss_pred cCCCceE--ecCCCeeEEEEECCCCCCHHHHHHHHhCccc--cCCcCCCCCccceEeeEEEEeecCc
Confidence 6667777 999999 99999999999999999999953 1211111111223456788888654
No 80
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.81 E-value=9.9e-06 Score=90.45 Aligned_cols=54 Identities=15% Similarity=-0.025 Sum_probs=36.3
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccC---ccccc--------ccccceeeecCc
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGP---VTLII--------KDSIRDCFVTGK 488 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~w---dgeEL--------rdsIr~VFQTGk 488 (1182)
+..|++++|+|||||||||||++|+|+..|+ +|.+.+ .+..+ ...++++||+..
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~~l~g~~~~~--~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~ 230 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLNAINPGLKLR--VSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPG 230 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHHSTTCCCC---------------CCCSCCEEECTTSCEEESSCS
T ss_pred HhcCCeEEEECCCCCcHHHHHHHhccccccc--ccceecccCCCCCceeeeEEEEcCCCCEEEECcC
Confidence 3468999999999999999999999999854 444443 22211 135788898853
No 81
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.78 E-value=5.1e-06 Score=91.26 Aligned_cols=40 Identities=28% Similarity=0.275 Sum_probs=32.5
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcc
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVT 473 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdg 473 (1182)
+++|++++|+|||||||||||++|+|+++++ .+|.+.+.+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~-~~G~I~~~g 61 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQT-KSYHIITIE 61 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH-CCCEEEEEE
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCC-CCCEEEEcC
Confidence 7899999999999999999999999999843 144444433
No 82
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.78 E-value=8.5e-06 Score=91.53 Aligned_cols=38 Identities=32% Similarity=0.251 Sum_probs=31.1
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcc
Q psy5893 434 PPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVT 473 (1182)
Q Consensus 434 ~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdg 473 (1182)
.+|++++|+||||||||||+++|+|++.++ .|.+.+.+
T Consensus 100 ~~g~vi~lvG~nGsGKTTll~~Lagll~~~--~g~V~l~g 137 (304)
T 1rj9_A 100 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNL--GKKVMFCA 137 (304)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEEC
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEe
Confidence 379999999999999999999999999854 44444433
No 83
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.77 E-value=7.9e-06 Score=85.62 Aligned_cols=48 Identities=27% Similarity=0.141 Sum_probs=36.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccc------ccccccceeeecC
Q psy5893 436 PIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTL------IIKDSIRDCFVTG 487 (1182)
Q Consensus 436 GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdge------ELrdsIr~VFQTG 487 (1182)
|++++|+|||||||||||++|+|++. +.| +.+.+. .....++++||+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G---i~~~g~~~~~~~~~~~~ig~~~~~~ 54 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG---VPVDGFYTEEVRQGGRRIGFDVVTL 54 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT---CCCEEEECCEEETTSSEEEEEEEET
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC---EEEcCEecchhHhhhceEEEEEEec
Confidence 78999999999999999999999987 443 444432 2345667777764
No 84
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.76 E-value=1e-05 Score=83.47 Aligned_cols=26 Identities=31% Similarity=0.603 Sum_probs=24.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 436 PIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 436 GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
|.+++|+||||||||||+++|+|+++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 57899999999999999999999987
No 85
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.76 E-value=1.1e-05 Score=82.40 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=26.4
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
+++|++++|+||||||||||+++|+|+.
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhcc
Confidence 6789999999999999999999999983
No 86
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.76 E-value=9.7e-06 Score=93.17 Aligned_cols=40 Identities=20% Similarity=0.144 Sum_probs=33.1
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcc
Q psy5893 432 LEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVT 473 (1182)
Q Consensus 432 ~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdg 473 (1182)
.+.+|++++||||||||||||+++|+|++.+. .|.+.+.+
T Consensus 153 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~--~G~V~l~g 192 (359)
T 2og2_A 153 GFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE--GTKVLMAA 192 (359)
T ss_dssp CSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT--TCCEEEEC
T ss_pred ecCCCeEEEEEcCCCChHHHHHHHHHhhcccc--CCEEEEec
Confidence 38899999999999999999999999999854 34444433
No 87
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.75 E-value=1.1e-05 Score=96.24 Aligned_cols=36 Identities=31% Similarity=0.409 Sum_probs=31.3
Q ss_pred CCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCC
Q psy5893 430 TPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPL 465 (1182)
Q Consensus 430 ~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~ 465 (1182)
++.+.+|++++|||||||||||||++|+|++.+..+
T Consensus 287 sl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G 322 (503)
T 2yhs_A 287 NVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGK 322 (503)
T ss_dssp CCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred eeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCC
Confidence 334899999999999999999999999999985433
No 88
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.73 E-value=5.8e-06 Score=99.12 Aligned_cols=63 Identities=10% Similarity=-0.167 Sum_probs=47.4
Q ss_pred ccccccccCC-CCCCCCCcEEEEEcCCCCCHHHHHHH--HHccCCCCCCcccccCccccc-------ccccceeeec
Q psy5893 420 KKHHVPQVDR-TPLEPPPIVVAVVGPPQVGKSTLIRC--LIKNFTKTPLSVIKGPVTLII-------KDSIRDCFVT 486 (1182)
Q Consensus 420 ~k~~i~~vd~-~~~i~~GeivaIvGpsGsGKSTLLrl--L~Gl~~~~~~SGii~wdgeEL-------rdsIr~VFQT 486 (1182)
....++.+++ . +++|++++|+||||||||||+++ |+|++++ +++.+.+.+.+. ...++++||.
T Consensus 24 g~~~Ld~i~~G~--i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~--~~g~i~v~g~~~~~~~~~~~~~~g~~~q~ 96 (525)
T 1tf7_A 24 MIEGFDDISHGG--LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEF--DEPGVFVTFEETPQDIIKNARSFGWDLAK 96 (525)
T ss_dssp CCTTHHHHTTSS--EETTSEEEEEESTTSSHHHHHHHHHHHHHHHH--CCCEEEEESSSCHHHHHHHHGGGTCCHHH
T ss_pred CchhHHHhcCCC--CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhC--CCCEEEEEEeCCHHHHHHHHHHcCCChHH
Confidence 4456777777 6 99999999999999999999999 7899984 455555555432 2456666664
No 89
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.69 E-value=1.4e-05 Score=97.78 Aligned_cols=54 Identities=15% Similarity=0.032 Sum_probs=38.7
Q ss_pred ccccCCCCCCCCC-----cEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccccccccceeeec
Q psy5893 424 VPQVDRTPLEPPP-----IVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIKDSIRDCFVT 486 (1182)
Q Consensus 424 i~~vd~~~~i~~G-----eivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeELrdsIr~VFQT 486 (1182)
+..++++ +.+| ++++|+|||||||||||++|+|+++|+.|.. +. ...+++++|.
T Consensus 363 l~~vsl~--v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~---~~----~~~i~~~~q~ 421 (608)
T 3j16_B 363 QGDFVLN--VEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD---IP----KLNVSMKPQK 421 (608)
T ss_dssp CSSCEEE--ECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC---CC----SCCEEEECSS
T ss_pred cCceEEE--EecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC---cc----CCcEEEeccc
Confidence 4444444 5555 8899999999999999999999999665531 11 1246666665
No 90
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.69 E-value=4.5e-06 Score=94.67 Aligned_cols=47 Identities=19% Similarity=0.175 Sum_probs=37.8
Q ss_pred cccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcc
Q psy5893 423 HVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVT 473 (1182)
Q Consensus 423 ~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdg 473 (1182)
.+..+++. +++|++++|+|||||||||||++|+|++++ .+|.+.+.+
T Consensus 160 ~l~~l~~~--i~~g~~v~i~G~~GsGKTTll~~l~g~~~~--~~g~i~i~~ 206 (330)
T 2pt7_A 160 AISAIKDG--IAIGKNVIVCGGTGSGKTTYIKSIMEFIPK--EERIISIED 206 (330)
T ss_dssp HHHHHHHH--HHHTCCEEEEESTTSCHHHHHHHGGGGSCT--TSCEEEEES
T ss_pred HHhhhhhh--ccCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCcEEEECC
Confidence 34455555 899999999999999999999999999995 455555544
No 91
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.66 E-value=8.6e-06 Score=92.57 Aligned_cols=40 Identities=33% Similarity=0.330 Sum_probs=34.4
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCC
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKT 463 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~ 463 (1182)
..+..+++. +.+|++++|+|||||||||||++|+|++.++
T Consensus 43 ~~l~~i~~~--~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~ 82 (337)
T 2qm8_A 43 DLIDAVLPQ--TGRAIRVGITGVPGVGKSTTIDALGSLLTAA 82 (337)
T ss_dssp HHHHHHGGG--CCCSEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHhCCcc--cCCCeEEEEECCCCCCHHHHHHHHHHhhhhC
Confidence 345566666 8999999999999999999999999998854
No 92
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.65 E-value=1.6e-05 Score=82.95 Aligned_cols=29 Identities=31% Similarity=0.644 Sum_probs=26.0
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
.++|++++|+||||||||||+++|+|++.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999999999986
No 93
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.65 E-value=2.1e-05 Score=80.71 Aligned_cols=27 Identities=19% Similarity=0.328 Sum_probs=25.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 435 PPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 435 ~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
+|.+++|+||||||||||+++|+++++
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 689999999999999999999999876
No 94
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.63 E-value=1.8e-05 Score=83.96 Aligned_cols=30 Identities=23% Similarity=0.194 Sum_probs=27.1
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHH--ccCC
Q psy5893 432 LEPPPIVVAVVGPPQVGKSTLIRCLI--KNFT 461 (1182)
Q Consensus 432 ~i~~GeivaIvGpsGsGKSTLLrlL~--Gl~~ 461 (1182)
-+++|++++|+||||||||||+++|+ |+..
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~ 57 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEE 57 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 48999999999999999999999999 6633
No 95
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.61 E-value=3e-05 Score=80.08 Aligned_cols=29 Identities=21% Similarity=0.476 Sum_probs=26.9
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
+.+|.+++|+||||||||||+++|++++.
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~~ 31 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDPS 31 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCTT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 67899999999999999999999999985
No 96
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.54 E-value=6.1e-06 Score=89.10 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=27.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcc
Q psy5893 437 IVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVT 473 (1182)
Q Consensus 437 eivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdg 473 (1182)
++++|+|||||||||||++|+|++.|+. |.+.+++
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~~~~--G~i~~~g 62 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALIPDL--TLLHFRN 62 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHSCCT--TTC----
T ss_pred cEEEEECCCCCCHHHHHHHHhcccccCC--CeEEECC
Confidence 7899999999999999999999999554 4444433
No 97
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.54 E-value=5.5e-05 Score=84.58 Aligned_cols=53 Identities=15% Similarity=-0.018 Sum_probs=36.6
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccC---ccccc-------c-cccceeeecCc
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGP---VTLII-------K-DSIRDCFVTGK 488 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~w---dgeEL-------r-dsIr~VFQTGk 488 (1182)
+..|++++|+|||||||||||++|+ +..+ .+|.+.+ .+... . ..++++||+..
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~--~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg 225 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEEL--RTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPG 225 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCC--CCSCC---------CCCCEEEEEETTTEEEESSCC
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhC--cccccccccCCCCCceeeEEEEEcCCCcEEEECcC
Confidence 3569999999999999999999999 8884 4455544 33221 1 25788888853
No 98
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.53 E-value=2.5e-05 Score=89.26 Aligned_cols=37 Identities=30% Similarity=0.446 Sum_probs=32.2
Q ss_pred ccCCCCCCCC--CcEEEEEcCCCCCHHHHHHHHHccCCCCC
Q psy5893 426 QVDRTPLEPP--PIVVAVVGPPQVGKSTLIRCLIKNFTKTP 464 (1182)
Q Consensus 426 ~vd~~~~i~~--GeivaIvGpsGsGKSTLLrlL~Gl~~~~~ 464 (1182)
.|+++ +.+ |+.++|+||||||||||+++|+|++.++.
T Consensus 160 ~v~~~--v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 160 FIPKE--ARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp GSCTT--TGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred hCCHH--HHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 34444 889 99999999999999999999999998543
No 99
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.53 E-value=2.5e-05 Score=96.33 Aligned_cols=42 Identities=24% Similarity=0.311 Sum_probs=29.8
Q ss_pred ccccccccCCCCCCCCCcEEEEEcCCCCCHHHHH---------------------HHHHccCCCC
Q psy5893 420 KKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLI---------------------RCLIKNFTKT 463 (1182)
Q Consensus 420 ~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLL---------------------rlL~Gl~~~~ 463 (1182)
..+++..++++ +++|++++||||||||||||| ++|+|+..|+
T Consensus 30 ~~~~L~~vsl~--i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~ 92 (670)
T 3ux8_A 30 RAHNLKNIDVE--IPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPD 92 (670)
T ss_dssp CSTTCCSEEEE--EETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CC
T ss_pred CccceeccEEE--ECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCC
Confidence 34678888888 999999999999999999998 8888887743
No 100
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.53 E-value=3.9e-05 Score=93.84 Aligned_cols=51 Identities=20% Similarity=0.132 Sum_probs=32.7
Q ss_pred EEEEcCCCCCHHHHHHHHHccCCCCCCcccccCcccc-----------cccccceeeecCccc
Q psy5893 439 VAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLI-----------IKDSIRDCFVTGKWK 490 (1182)
Q Consensus 439 vaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdgeE-----------LrdsIr~VFQTGkw~ 490 (1182)
+||||||||||||||++|+|++.| .++|.+.+.+.+ ++..|+++||...+.
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P-~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~ 109 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALP-RGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEIS 109 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC--------CCCSCEEEEEEECSSSSCCEEEESCC---CCCC
T ss_pred EEEECCCCChHHHHHHHHhCCCCC-CCCCeEEEcCEEEEEecCCccccceeEEeeecccccCC
Confidence 999999999999999999999864 145666555443 345678888876543
No 101
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.51 E-value=8e-05 Score=75.76 Aligned_cols=31 Identities=19% Similarity=0.188 Sum_probs=26.9
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccCCCCC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTP 464 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~ 464 (1182)
..+| +++|+|||||||||||++|.+++.+..
T Consensus 24 ~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~ 54 (182)
T 3kta_A 24 FSKG-FTAIVGANGSGKSNIGDAILFVLGGLS 54 (182)
T ss_dssp CCSS-EEEEEECTTSSHHHHHHHHHHHTTCCC
T ss_pred cCCC-cEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 4466 999999999999999999999987533
No 102
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.50 E-value=4.1e-05 Score=85.67 Aligned_cols=29 Identities=31% Similarity=0.499 Sum_probs=27.3
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
..+|+++||+||||||||||+++|+|++.
T Consensus 77 ~~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 77 QRIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 47899999999999999999999999986
No 103
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.47 E-value=3.1e-05 Score=87.93 Aligned_cols=40 Identities=23% Similarity=0.175 Sum_probs=32.5
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCccc
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTL 474 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wdge 474 (1182)
.++|++++|+||||||||||+++|+|++.+. .|.+.+.+.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~--~g~V~l~g~ 165 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNH--GFSVVIAAS 165 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhc--CCEEEEEee
Confidence 4689999999999999999999999999854 344444433
No 104
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.46 E-value=2.4e-05 Score=88.11 Aligned_cols=55 Identities=13% Similarity=0.014 Sum_probs=32.7
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccC---ccc------ccccc-cceeeecCcc
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGP---VTL------IIKDS-IRDCFVTGKW 489 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~w---dge------ELrds-Ir~VFQTGkw 489 (1182)
+.+|++++|+|||||||||||++|+|+..+. +|.+.+ .+. .+... +++++|+.-.
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~--~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~ 234 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISPELGLR--TNEISEHLGRGKHTTRHVELIHTSGGLVADTPGF 234 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC---------------------CCCCCEEEETTEEEESSCSC
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhccccccc--ccceeeecCCCcccccHHHHhhcCCEEEecCCCc
Confidence 5689999999999999999999999999853 343333 221 12222 6778887543
No 105
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.45 E-value=2.8e-05 Score=84.41 Aligned_cols=32 Identities=28% Similarity=0.310 Sum_probs=28.2
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHH---ccCCCCC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLI---KNFTKTP 464 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~---Gl~~~~~ 464 (1182)
..+|.+++|+|||||||||++++|+ |+..++.
T Consensus 24 ~~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~ 58 (252)
T 4e22_A 24 TAIAPVITVDGPSGAGKGTLCKALAESLNWRLLDS 58 (252)
T ss_dssp TTTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCC
Confidence 3689999999999999999999999 8877543
No 106
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.45 E-value=4.2e-05 Score=79.23 Aligned_cols=24 Identities=29% Similarity=0.679 Sum_probs=22.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
.++|+|||||||||||++|+|++.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999985
No 107
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.43 E-value=6.7e-05 Score=78.85 Aligned_cols=29 Identities=24% Similarity=0.461 Sum_probs=27.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHccCCC
Q psy5893 434 PPPIVVAVVGPPQVGKSTLIRCLIKNFTK 462 (1182)
Q Consensus 434 ~~GeivaIvGpsGsGKSTLLrlL~Gl~~~ 462 (1182)
++|.+++|+||||||||||+++|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 57999999999999999999999999873
No 108
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.39 E-value=6.2e-05 Score=78.34 Aligned_cols=28 Identities=25% Similarity=0.338 Sum_probs=24.9
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
.++|++++|+||||||||||+++|++++
T Consensus 26 ~~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 26 GEPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4679999999999999999999999876
No 109
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.39 E-value=5e-05 Score=83.69 Aligned_cols=40 Identities=18% Similarity=0.168 Sum_probs=34.4
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCC
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKT 463 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~ 463 (1182)
..+..+++. +++|++++|+||||||||||+++|+|++.+.
T Consensus 23 ~~Ld~i~~~--l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~ 62 (296)
T 1cr0_A 23 TGINDKTLG--ARGGEVIMVTSGSGMGKSTFVRQQALQWGTA 62 (296)
T ss_dssp TTHHHHHCS--BCTTCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcC--CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 455666655 8999999999999999999999999999854
No 110
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.36 E-value=5.3e-05 Score=87.24 Aligned_cols=31 Identities=32% Similarity=0.426 Sum_probs=28.9
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccCCCC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNFTKT 463 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~ 463 (1182)
+.+|++++|+|||||||||||++|+|+++++
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~ 163 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQT 163 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC
Confidence 6899999999999999999999999999853
No 111
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.32 E-value=0.00011 Score=84.26 Aligned_cols=54 Identities=17% Similarity=0.070 Sum_probs=35.6
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHccCC-CCCCcccccCc-c----cccccccceeeecCcc
Q psy5893 434 PPPIVVAVVGPPQVGKSTLIRCLIKNFT-KTPLSVIKGPV-T----LIIKDSIRDCFVTGKW 489 (1182)
Q Consensus 434 ~~GeivaIvGpsGsGKSTLLrlL~Gl~~-~~~~SGii~wd-g----eELrdsIr~VFQTGkw 489 (1182)
.+|++++|+|||||||||||++|+|+.. +..| .+.+. + ......+..++|.+.+
T Consensus 213 ~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G--~I~~~~G~g~~tt~~~~i~~v~q~~~l 272 (358)
T 2rcn_A 213 LTGRISIFAGQSGVGKSSLLNALLGLQNEILTN--DVSNVSGLGQHTTTAARLYHFPHGGDV 272 (358)
T ss_dssp HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC---------------CCCEEEECTTSCEE
T ss_pred cCCCEEEEECCCCccHHHHHHHHhccccccccC--CccccCCCCccceEEEEEEEECCCCEe
Confidence 4799999999999999999999999987 6443 33322 1 1223345666665543
No 112
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.31 E-value=8.6e-05 Score=77.23 Aligned_cols=29 Identities=31% Similarity=0.287 Sum_probs=27.2
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
..+|++++|+||||||||||+++|++++.
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 47899999999999999999999999886
No 113
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.27 E-value=6.8e-05 Score=95.77 Aligned_cols=36 Identities=25% Similarity=0.329 Sum_probs=32.1
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHc
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIK 458 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~G 458 (1182)
+..+..++++ +.+|++++|+|||||||||||++|+|
T Consensus 448 ~~iL~~vsl~--I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 448 KILLNKTQLR--LKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEEEEEEEEE--EETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred EEeEecceEE--EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3467777777 99999999999999999999999995
No 114
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.27 E-value=8.2e-05 Score=79.89 Aligned_cols=28 Identities=21% Similarity=0.340 Sum_probs=25.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHH---ccCCC
Q psy5893 435 PPIVVAVVGPPQVGKSTLIRCLI---KNFTK 462 (1182)
Q Consensus 435 ~GeivaIvGpsGsGKSTLLrlL~---Gl~~~ 462 (1182)
.+++++|+||||||||||+++|+ |+..+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 47899999999999999999999 99874
No 115
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.26 E-value=6e-05 Score=93.00 Aligned_cols=35 Identities=34% Similarity=0.465 Sum_probs=30.7
Q ss_pred cccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHH
Q psy5893 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLI 457 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~ 457 (1182)
..++..++++ +++|++++|+|||||||||||++|+
T Consensus 335 ~~~L~~vsl~--I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 335 EHNLKNVSVK--IPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp STTCCSEEEE--EETTSEEEEECSTTSSHHHHHTTTH
T ss_pred ccccccceeE--ecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 3567778877 9999999999999999999998764
No 116
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.23 E-value=0.00011 Score=86.00 Aligned_cols=31 Identities=26% Similarity=0.459 Sum_probs=28.4
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccCCCC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNFTKT 463 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~ 463 (1182)
..+|++++|+|||||||||||++|+|++++.
T Consensus 164 ~~~ggii~I~GpnGSGKTTlL~allg~l~~~ 194 (418)
T 1p9r_A 164 KRPHGIILVTGPTGSGKSTTLYAGLQELNSS 194 (418)
T ss_dssp TSSSEEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred HhcCCeEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 3689999999999999999999999999854
No 117
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.22 E-value=9.5e-05 Score=88.70 Aligned_cols=45 Identities=13% Similarity=0.089 Sum_probs=35.4
Q ss_pred ccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCcccccCc
Q psy5893 424 VPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPV 472 (1182)
Q Consensus 424 i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~SGii~wd 472 (1182)
+..+++. +.+|++++|+|||||||||||++|+|++++ ..+.+.+.
T Consensus 250 l~~l~~~--v~~g~~i~I~GptGSGKTTlL~aL~~~i~~--~~giitie 294 (511)
T 2oap_1 250 LAYLWLA--IEHKFSAIVVGETASGKTTTLNAIMMFIPP--DAKVVSIE 294 (511)
T ss_dssp HHHHHHH--HHTTCCEEEEESTTSSHHHHHHHHGGGSCT--TCCEEEEE
T ss_pred HHHHHHH--HhCCCEEEEECCCCCCHHHHHHHHHhhCCC--CCCEEEEc
Confidence 3344444 789999999999999999999999999984 45554443
No 118
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.22 E-value=9.1e-05 Score=76.41 Aligned_cols=30 Identities=27% Similarity=0.278 Sum_probs=27.0
Q ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 431 PLEPPPIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 431 ~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
+.+.+|..++|+|+|||||||||++|+|..
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 348899999999999999999999999987
No 119
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.19 E-value=0.00013 Score=74.77 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHc
Q psy5893 436 PIVVAVVGPPQVGKSTLIRCLIK 458 (1182)
Q Consensus 436 GeivaIvGpsGsGKSTLLrlL~G 458 (1182)
|++++|+||||||||||+++|++
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 67899999999999999999998
No 120
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.16 E-value=9.9e-05 Score=84.67 Aligned_cols=31 Identities=32% Similarity=0.530 Sum_probs=28.5
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccCCCC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNFTKT 463 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~ 463 (1182)
+.+|++++|+|||||||||||++|+|++++.
T Consensus 120 ~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~ 150 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT 150 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCCCHHHHHHHHHhcccCC
Confidence 5788899999999999999999999999853
No 121
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.16 E-value=0.00018 Score=76.05 Aligned_cols=28 Identities=18% Similarity=0.347 Sum_probs=26.1
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 434 PPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 434 ~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
-+|.+++|+||||||||||+++|++.++
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4799999999999999999999999876
No 122
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=97.15 E-value=8e-05 Score=85.83 Aligned_cols=39 Identities=18% Similarity=0.172 Sum_probs=33.1
Q ss_pred cccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCC
Q psy5893 423 HVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTP 464 (1182)
Q Consensus 423 ~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~ 464 (1182)
.+..+++. +.+| +++|+|||||||||||++|.++....+
T Consensus 50 ~l~~v~l~--~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~ 88 (415)
T 4aby_A 50 TITQLELE--LGGG-FCAFTGETGAGKSIIVDALGLLLGGRA 88 (415)
T ss_dssp TEEEEEEE--CCSS-EEEEEESHHHHHHHHTHHHHHHTTCCC
T ss_pred ceeeEEEe--cCCC-cEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 45566666 8899 999999999999999999999987543
No 123
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.14 E-value=0.00026 Score=73.71 Aligned_cols=36 Identities=22% Similarity=0.395 Sum_probs=29.8
Q ss_pred ccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 426 QVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 426 ~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
...+...+.+|.+++|+|+||||||||+++|++++.
T Consensus 11 ~~~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 11 SSGLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp ---CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred cccccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 334556689999999999999999999999999874
No 124
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.14 E-value=0.00016 Score=77.10 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=25.8
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHcc
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKN 459 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl 459 (1182)
.++|.+++|+|+||||||||+++|+|+
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 578999999999999999999999998
No 125
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.14 E-value=4.7e-05 Score=77.56 Aligned_cols=30 Identities=27% Similarity=0.355 Sum_probs=27.6
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccCCC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNFTK 462 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~ 462 (1182)
+.+|+.++|+||||+|||||+++|++.+.+
T Consensus 35 ~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 64 (180)
T 3ec2_A 35 PEEGKGLTFVGSPGVGKTHLAVATLKAIYE 64 (180)
T ss_dssp GGGCCEEEECCSSSSSHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 567999999999999999999999999863
No 126
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.11 E-value=0.00018 Score=72.66 Aligned_cols=27 Identities=15% Similarity=0.228 Sum_probs=24.9
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 434 PPPIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 434 ~~GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
.+|.+++|+||||||||||+++|++++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 568999999999999999999999875
No 127
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.11 E-value=7e-05 Score=77.32 Aligned_cols=38 Identities=18% Similarity=0.333 Sum_probs=28.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHccCCCCC-CcccccCccc
Q psy5893 437 IVVAVVGPPQVGKSTLIRCLIKNFTKTP-LSVIKGPVTL 474 (1182)
Q Consensus 437 eivaIvGpsGsGKSTLLrlL~Gl~~~~~-~SGii~wdge 474 (1182)
++++|+|+||||||||+++|+|++.+.. ..|.+.+++.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~ 41 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAH 41 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCc
Confidence 5799999999999999999999998531 1455555544
No 128
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.10 E-value=0.00018 Score=72.22 Aligned_cols=27 Identities=33% Similarity=0.423 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 435 PPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 435 ~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
.|.+++|+||||||||||+++|++++.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 367899999999999999999999875
No 129
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.08 E-value=0.00021 Score=74.25 Aligned_cols=36 Identities=14% Similarity=0.194 Sum_probs=25.2
Q ss_pred ccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 424 VPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 424 i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
+..++++ +.+|.+++|+||+||||||+.+.|++.+.
T Consensus 15 ~~~~~~~--~~~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 15 TENLYFQ--SNAMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp -----------CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCceeEe--cCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4455555 89999999999999999999999998653
No 130
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.06 E-value=0.00019 Score=74.78 Aligned_cols=29 Identities=24% Similarity=0.363 Sum_probs=27.4
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
+++|++++|+||||||||||+++|++...
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999999998876
No 131
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.04 E-value=0.00021 Score=74.59 Aligned_cols=29 Identities=24% Similarity=0.375 Sum_probs=27.0
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
..+|.+++|+|+||||||||+++|++++.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46789999999999999999999999986
No 132
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.03 E-value=0.00014 Score=82.92 Aligned_cols=59 Identities=15% Similarity=-0.031 Sum_probs=42.0
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHccC--CCCCC--ccc-ccCccccc--ccccceeeecCccc
Q psy5893 432 LEPPPIVVAVVGPPQVGKSTLIRCLIKNF--TKTPL--SVI-KGPVTLII--KDSIRDCFVTGKWK 490 (1182)
Q Consensus 432 ~i~~GeivaIvGpsGsGKSTLLrlL~Gl~--~~~~~--SGi-i~wdgeEL--rdsIr~VFQTGkw~ 490 (1182)
-+++|++++|+||||||||||+++|+++. +++.| .|. +.++++.. ...|+.++|...|.
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~ 192 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLD 192 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCC
Confidence 38999999999999999999999999998 43332 133 45555443 34566666665443
No 133
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.88 E-value=0.00022 Score=82.40 Aligned_cols=37 Identities=22% Similarity=0.204 Sum_probs=31.7
Q ss_pred cccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 423 HVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 423 ~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
.+..+++. +++|++++|+||||||||||+++|+|...
T Consensus 158 ~l~~~~~~--i~~~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 158 FLKCMVYN--IPKKRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp HHHHHHHC--CTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred HHHhcccc--cCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 44555555 89999999999999999999999999764
No 134
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.86 E-value=0.00034 Score=70.29 Aligned_cols=28 Identities=21% Similarity=0.272 Sum_probs=26.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHccCCC
Q psy5893 435 PPIVVAVVGPPQVGKSTLIRCLIKNFTK 462 (1182)
Q Consensus 435 ~GeivaIvGpsGsGKSTLLrlL~Gl~~~ 462 (1182)
+|++++|+||||||||||+++|++.+.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 7999999999999999999999999873
No 135
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.83 E-value=0.00032 Score=89.34 Aligned_cols=36 Identities=25% Similarity=0.265 Sum_probs=30.0
Q ss_pred cccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 423 HVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 423 ~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
...+++++ +.+|++++|+||||||||||||+|+++.
T Consensus 662 V~ndvsl~--~~~g~i~~ItGPNGaGKSTlLr~i~~i~ 697 (918)
T 3thx_B 662 VPNNTDLS--EDSERVMIITGPNMGGKSSYIKQVALIT 697 (918)
T ss_dssp CCEEEEEC--TTSCCEEEEESCCCHHHHHHHHHHHHHH
T ss_pred eccccccc--CCCCeEEEEECCCCCchHHHHHHHHHHH
Confidence 33455555 8899999999999999999999998764
No 136
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.83 E-value=0.00016 Score=79.01 Aligned_cols=39 Identities=15% Similarity=0.217 Sum_probs=33.9
Q ss_pred cccccccCCCCCCCC---CcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 421 KHHVPQVDRTPLEPP---PIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 421 k~~i~~vd~~~~i~~---GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
...+..++++ +.+ |++++|+|++||||||++++|++.+.
T Consensus 32 ~~~l~~~~~~--i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 32 QQILKKKAEE--VKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CHHHHHHHHT--THHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred chhhhhhhhh--hhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4567777777 888 99999999999999999999998553
No 137
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.82 E-value=0.00045 Score=86.98 Aligned_cols=35 Identities=23% Similarity=0.285 Sum_probs=29.5
Q ss_pred ccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 424 VPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 424 i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
+.+++++ ++|++++|+||||||||||||+|+|+..
T Consensus 598 lndisl~---~~g~i~~ItGpNGsGKSTlLr~iagl~~ 632 (800)
T 1wb9_A 598 ANPLNLS---PQRRMLIITGPNMGGKSTYMRQTALIAL 632 (800)
T ss_dssp CEEEEEC---SSSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eeccccc---CCCcEEEEECCCCCChHHHHHHHHHHHH
Confidence 3444544 7899999999999999999999999853
No 138
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.80 E-value=0.00049 Score=77.93 Aligned_cols=27 Identities=33% Similarity=0.568 Sum_probs=24.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHccCCC
Q psy5893 436 PIVVAVVGPPQVGKSTLIRCLIKNFTK 462 (1182)
Q Consensus 436 GeivaIvGpsGsGKSTLLrlL~Gl~~~ 462 (1182)
.-++||+||||||||||+++|++++..
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 348999999999999999999999874
No 139
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.76 E-value=0.00055 Score=72.18 Aligned_cols=27 Identities=15% Similarity=0.214 Sum_probs=25.8
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHcc
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKN 459 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl 459 (1182)
+++|++++|+||||||||||++.|++.
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 789999999999999999999999994
No 140
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.73 E-value=0.00059 Score=76.67 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 437 IVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 437 eivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
.+++|+|+|||||||||++|.|+.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 589999999999999999999986
No 141
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=96.72 E-value=0.00055 Score=85.77 Aligned_cols=26 Identities=31% Similarity=0.344 Sum_probs=24.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 436 PIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 436 GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
|++++|+||||||||||||+|+|+..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~~ 601 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIAL 601 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhhh
Confidence 99999999999999999999999864
No 142
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.71 E-value=0.00081 Score=69.75 Aligned_cols=26 Identities=31% Similarity=0.307 Sum_probs=25.3
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHc
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIK 458 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~G 458 (1182)
+++|++++|+||||||||||++.|++
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999999999999
No 143
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.67 E-value=0.00083 Score=78.68 Aligned_cols=37 Identities=32% Similarity=0.310 Sum_probs=28.9
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCCCCCc
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLS 466 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~~~~S 466 (1182)
.++..+++. ++|||||||||||||++|+|+..+.++.
T Consensus 25 ~vl~~vsf~--------I~lvG~sGaGKSTLln~L~g~~~~~~~~ 61 (418)
T 2qag_C 25 SVKRGFEFT--------LMVVGESGLGKSTLINSLFLTDLYSPEY 61 (418)
T ss_dssp TCC-CCCEE--------EEEECCTTSSHHHHHHHHTTCCCCCCCC
T ss_pred EEecCCCEE--------EEEECCCCCcHHHHHHHHhCCCCCCCCC
Confidence 456666666 4999999999999999999998754443
No 144
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.64 E-value=0.00069 Score=74.62 Aligned_cols=35 Identities=23% Similarity=0.444 Sum_probs=29.1
Q ss_pred cccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 423 HVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 423 ~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
.+..+++. ++.| ++|+||||||||||+++|+|.+.
T Consensus 35 ~l~~~~l~--~~~G--vlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 35 QFKALGLV--TPAG--VLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp HHHHTTCC--CCSE--EEEESSTTSCHHHHHHHHHHHTT
T ss_pred HHHHcCCC--CCCe--EEEECCCCCcHHHHHHHHHHHcC
Confidence 34445555 7777 99999999999999999999876
No 145
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.63 E-value=0.00093 Score=77.90 Aligned_cols=30 Identities=17% Similarity=0.257 Sum_probs=27.3
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccCCC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNFTK 462 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~ 462 (1182)
+.+|++++|+|||||||||||.+|+++..+
T Consensus 23 ~~~~~~~~i~G~nG~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 23 FGESNFTSIIGPNGSGKSNMMDAISFVLGV 52 (430)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 356899999999999999999999999873
No 146
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.62 E-value=0.00076 Score=70.70 Aligned_cols=25 Identities=28% Similarity=0.566 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 436 PIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 436 GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
+.+++|+|||||||||++++|++.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999876
No 147
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.57 E-value=0.00087 Score=85.62 Aligned_cols=30 Identities=30% Similarity=0.277 Sum_probs=25.8
Q ss_pred ccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHH
Q psy5893 426 QVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLI 457 (1182)
Q Consensus 426 ~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~ 457 (1182)
++++. +.+|++++|+||||||||||||+|+
T Consensus 654 disl~--~~~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 654 DVYFE--KDKQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp EEEEE--TTTBCEEEEECCTTSSHHHHHHHHH
T ss_pred cceee--cCCCeEEEEECCCCCCHHHHHHHHH
Confidence 34444 7889999999999999999999993
No 148
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.57 E-value=0.00066 Score=75.83 Aligned_cols=32 Identities=34% Similarity=0.399 Sum_probs=21.0
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHcc-CC
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKN-FT 461 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl-~~ 461 (1182)
.++..+++. ++|||||||||||||++|+|+ +.
T Consensus 12 ~~l~~~~~~--------I~lvG~nG~GKSTLl~~L~g~~~~ 44 (301)
T 2qnr_A 12 SVKKGFEFT--------LMVVGESGLGKSTLINSLFLTDLY 44 (301)
T ss_dssp ------CEE--------EEEEEETTSSHHHHHHHHHC----
T ss_pred EEEcCCCEE--------EEEECCCCCCHHHHHHHHhCCCcc
Confidence 345555555 499999999999999999997 55
No 149
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.55 E-value=0.00055 Score=82.85 Aligned_cols=30 Identities=33% Similarity=0.396 Sum_probs=28.2
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccCCC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNFTK 462 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~ 462 (1182)
+.+|++++|+|+||||||||+++|+|++.+
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 678999999999999999999999999974
No 150
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=96.53 E-value=0.00098 Score=86.01 Aligned_cols=37 Identities=27% Similarity=0.203 Sum_probs=31.1
Q ss_pred ccccccCCCCCCCC-------CcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 422 HHVPQVDRTPLEPP-------PIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~-------GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
..+.++++. +.+ |++++|+||||||||||||+| |++.
T Consensus 770 ~v~ndi~l~--~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~ 813 (1022)
T 2o8b_B 770 FIPNDILIG--CEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA 813 (1022)
T ss_dssp CCCEEEEES--CCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred eEeeeeeec--cccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH
Confidence 355666665 555 899999999999999999999 9886
No 151
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.50 E-value=0.0011 Score=69.12 Aligned_cols=29 Identities=34% Similarity=0.530 Sum_probs=26.1
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
..+|.+++|+||||||||||++.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45789999999999999999999998764
No 152
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.49 E-value=0.001 Score=67.48 Aligned_cols=28 Identities=21% Similarity=0.182 Sum_probs=25.4
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 434 PPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 434 ~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
.+|.+++|+|++||||||++++|++.+.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999999999875
No 153
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.45 E-value=0.0011 Score=72.41 Aligned_cols=29 Identities=31% Similarity=0.261 Sum_probs=27.2
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
+++|++++|+||||||||||+..|++.+.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 78999999999999999999999998765
No 154
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.43 E-value=0.0014 Score=67.93 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcc
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKN 459 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl 459 (1182)
+++|+||+||||||+.++|+++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 6899999999999999999983
No 155
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.42 E-value=0.0015 Score=66.99 Aligned_cols=24 Identities=33% Similarity=0.474 Sum_probs=22.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
.++|||+|||||||||+.|+|...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 689999999999999999999876
No 156
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.42 E-value=0.0013 Score=75.66 Aligned_cols=35 Identities=20% Similarity=0.272 Sum_probs=28.7
Q ss_pred ccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 424 VPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 424 i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
+..+++. +.+| +++|+|||||||||||.+|.++..
T Consensus 17 ~~~~~~~--~~~g-~~~i~G~nG~GKttll~ai~~~~~ 51 (359)
T 2o5v_A 17 LAPGTLN--FPEG-VTGIYGENGAGKTNLLEAAYLALT 51 (359)
T ss_dssp CCSEEEE--CCSE-EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eeeeEEE--EcCC-eEEEECCCCCChhHHHHHHHHhcc
Confidence 3445555 6788 999999999999999999998654
No 157
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=96.41 E-value=0.0015 Score=75.84 Aligned_cols=26 Identities=38% Similarity=0.618 Sum_probs=25.0
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHc
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIK 458 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~G 458 (1182)
+..|..++|||+|||||||||++|+|
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHC
Confidence 67899999999999999999999999
No 158
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=96.39 E-value=0.0004 Score=87.76 Aligned_cols=37 Identities=27% Similarity=0.437 Sum_probs=32.1
Q ss_pred cccccCCCCCCCCCcEEEEEcCCCCCHHHHHHH-HHccCC
Q psy5893 423 HVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRC-LIKNFT 461 (1182)
Q Consensus 423 ~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrl-L~Gl~~ 461 (1182)
.+..++++ +++|++++|+|+||||||||+++ |+|++.
T Consensus 512 ~L~~vsl~--i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~ 549 (842)
T 2vf7_A 512 NLDNLDVR--FPLGVMTSVTGVSGSGKSTLVSQALVDALA 549 (842)
T ss_dssp TEEEEEEE--EESSSEEEEECCTTSSHHHHCCCCCHHHHH
T ss_pred ccccceEE--EcCCCEEEEEcCCCcCHHHHHHHHHHHHHH
Confidence 56777777 99999999999999999999997 777653
No 159
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.37 E-value=0.0014 Score=70.24 Aligned_cols=35 Identities=31% Similarity=0.517 Sum_probs=28.6
Q ss_pred cccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 423 HVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 423 ~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
.+..+++. +++| ++|+||||||||||+++|++...
T Consensus 40 ~~~~~~~~--~~~g--~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 40 RFHEMGAR--IPKG--VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp HHHHTTCC--CCSE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHHHcCCC--CCCe--EEEECCCCCCHHHHHHHHHHHhC
Confidence 34445555 7777 99999999999999999999875
No 160
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.34 E-value=0.0014 Score=71.51 Aligned_cols=35 Identities=31% Similarity=0.517 Sum_probs=28.8
Q ss_pred cccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 423 HVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 423 ~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
.+..+++. +++| ++|+||||||||||+++|++...
T Consensus 64 ~l~~~~~~--~~~g--vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 64 RFHEMGAR--IPKG--VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp HHHHTTCC--CCCE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHHHcCCC--CCCe--EEEECCCcChHHHHHHHHHHHcC
Confidence 34445555 7777 89999999999999999999875
No 161
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.33 E-value=0.0014 Score=72.98 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=26.7
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHccCCC
Q psy5893 434 PPPIVVAVVGPPQVGKSTLIRCLIKNFTK 462 (1182)
Q Consensus 434 ~~GeivaIvGpsGsGKSTLLrlL~Gl~~~ 462 (1182)
.++.+++|+||||||||||+++|.+++.+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 56889999999999999999999999973
No 162
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=96.31 E-value=0.00096 Score=78.09 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=30.1
Q ss_pred cccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 425 PQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 425 ~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
..+++. ++.|.+++|||+|||||||||++|++..+
T Consensus 148 ~~i~le--lk~g~~VgLVG~~gAGKSTLL~~Lsg~~~ 182 (416)
T 1udx_A 148 RRLRLE--LMLIADVGLVGYPNAGKSSLLAAMTRAHP 182 (416)
T ss_dssp EEEEEE--ECCSCSEEEECCGGGCHHHHHHHHCSSCC
T ss_pred eeeeeE--EcCCCEEEEECCCCCcHHHHHHHHHcCCc
Confidence 344444 88999999999999999999999999854
No 163
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.28 E-value=0.0019 Score=66.40 Aligned_cols=24 Identities=33% Similarity=0.474 Sum_probs=21.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
.++|||+|||||||||++|+|...
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~ 30 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEF 30 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 579999999999999999999854
No 164
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.25 E-value=0.0019 Score=72.55 Aligned_cols=30 Identities=40% Similarity=0.547 Sum_probs=28.1
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccCCC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNFTK 462 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~ 462 (1182)
..+|.+++|+|||||||||++..|++++.+
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~ 130 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVD 130 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHh
Confidence 678999999999999999999999999974
No 165
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.23 E-value=0.0017 Score=72.58 Aligned_cols=29 Identities=17% Similarity=0.131 Sum_probs=27.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHccCCC
Q psy5893 434 PPPIVVAVVGPPQVGKSTLIRCLIKNFTK 462 (1182)
Q Consensus 434 ~~GeivaIvGpsGsGKSTLLrlL~Gl~~~ 462 (1182)
.+|.+++|+|||||||||++..|++.+.+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57999999999999999999999999874
No 166
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=96.20 E-value=0.0011 Score=84.70 Aligned_cols=33 Identities=27% Similarity=0.456 Sum_probs=28.9
Q ss_pred cccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHH
Q psy5893 423 HVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLI 457 (1182)
Q Consensus 423 ~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~ 457 (1182)
.+..++++ +++|++++|+|+||||||||+++|+
T Consensus 657 ~Lk~Vsl~--I~~GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 657 NLRGIDVS--FPLGVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp TCCSEEEE--EESSSEEEEECSTTSSHHHHHTTTH
T ss_pred cccCceEE--ECCCCEEEEEcCCCCCHHHHHHHHH
Confidence 46666766 9999999999999999999999853
No 167
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.18 E-value=0.0022 Score=66.26 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIK 458 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~G 458 (1182)
+++|+|+|||||||++++|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
No 168
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.18 E-value=0.0023 Score=65.29 Aligned_cols=32 Identities=28% Similarity=0.268 Sum_probs=27.6
Q ss_pred CCCCCCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 430 TPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 430 ~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
.....+|.+++|+|++||||||+++.|++.+.
T Consensus 7 ~~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 7 YKCIEKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp -CCCSCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 33456899999999999999999999999876
No 169
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=96.11 E-value=0.0026 Score=81.14 Aligned_cols=30 Identities=30% Similarity=0.504 Sum_probs=26.5
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHH
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLI 453 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLL 453 (1182)
+.+..++++ +++|++++|+||||||||||+
T Consensus 598 ~~Lk~Vsl~--I~~Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 598 NNLKNIDVE--IPLGVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp TTCCSEEEE--EESSSEEEEECSTTSSHHHHH
T ss_pred ccccccceE--EcCCcEEEEEccCCCChhhhH
Confidence 456667777 999999999999999999997
No 170
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=96.07 E-value=0.001 Score=84.66 Aligned_cols=34 Identities=35% Similarity=0.467 Sum_probs=29.5
Q ss_pred ccccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHH
Q psy5893 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLI 457 (1182)
Q Consensus 422 ~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~ 457 (1182)
+.+..++++ ++.|++++|+|+||||||||+++|+
T Consensus 638 ~~Lk~Vsl~--I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 638 HNLKNVSVK--IPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp SSCCSEEEE--EESSSEEECCBCTTSSHHHHHTTTH
T ss_pred cccccceEE--EcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 356667777 9999999999999999999999864
No 171
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.07 E-value=0.0017 Score=74.52 Aligned_cols=28 Identities=25% Similarity=0.339 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
+.+| +++|+|||||||||||.+|+..+.
T Consensus 21 ~~~g-~~~i~G~NGaGKTTll~ai~~al~ 48 (365)
T 3qf7_A 21 FQSG-ITVVEGPNGAGKSSLFEAISFALF 48 (365)
T ss_dssp CCSE-EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCCC-eEEEECCCCCCHHHHHHHHHHHhc
Confidence 4567 888999999999999999996653
No 172
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.04 E-value=0.0028 Score=71.54 Aligned_cols=31 Identities=19% Similarity=0.266 Sum_probs=28.8
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHccCCC
Q psy5893 432 LEPPPIVVAVVGPPQVGKSTLIRCLIKNFTK 462 (1182)
Q Consensus 432 ~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~ 462 (1182)
.+.+|.+++|+||||+||||++..|++++.+
T Consensus 101 ~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~ 131 (320)
T 1zu4_A 101 KENRLNIFMLVGVNGTGKTTSLAKMANYYAE 131 (320)
T ss_dssp CTTSCEEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999999999999874
No 173
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.01 E-value=0.0027 Score=71.28 Aligned_cols=28 Identities=36% Similarity=0.464 Sum_probs=25.0
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
..+| +++|+|||||||||||.+|..++.
T Consensus 22 ~~~g-~~~i~G~NGsGKS~ll~ai~~llg 49 (322)
T 1e69_A 22 FSDR-VTAIVGPNGSGKSNIIDAIKWVFG 49 (322)
T ss_dssp CCSS-EEEEECCTTTCSTHHHHHHHHTSC
T ss_pred cCCC-cEEEECCCCCcHHHHHHHHHHHhC
Confidence 4567 999999999999999999998863
No 174
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.00 E-value=0.0032 Score=63.47 Aligned_cols=28 Identities=29% Similarity=0.471 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 434 PPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 434 ~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
++|..++|||++|+|||||++.|++...
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~ 29 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREA 29 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3678899999999999999999998653
No 175
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.00 E-value=0.0024 Score=72.76 Aligned_cols=28 Identities=43% Similarity=0.638 Sum_probs=25.5
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 434 PPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 434 ~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
+.+.+++|+|++||||||||+.|+|.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~ 99 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLT 99 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 3578999999999999999999999876
No 176
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.93 E-value=0.0032 Score=65.89 Aligned_cols=29 Identities=24% Similarity=0.267 Sum_probs=26.8
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
+.+|.+++|+|++||||||+.++|++.+.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 56789999999999999999999999876
No 177
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.90 E-value=0.0028 Score=75.98 Aligned_cols=31 Identities=16% Similarity=0.190 Sum_probs=29.1
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHccCCC
Q psy5893 432 LEPPPIVVAVVGPPQVGKSTLIRCLIKNFTK 462 (1182)
Q Consensus 432 ~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~ 462 (1182)
.+++|++++|+||||||||||+++|+|+..+
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~ 307 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACA 307 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHT
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 4899999999999999999999999999874
No 178
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.89 E-value=0.004 Score=62.43 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 436 PIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 436 GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
+.+.+|+|||||||||+|.+|.-.+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999998544
No 179
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.88 E-value=0.0035 Score=72.98 Aligned_cols=30 Identities=17% Similarity=0.182 Sum_probs=26.0
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHH--HHccCCC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRC--LIKNFTK 462 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrl--L~Gl~~~ 462 (1182)
+++|++++|+||||||||||++. ++++.++
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~ 206 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLAVTCQIPL 206 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSCG
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHHHHhccCc
Confidence 78999999999999999999994 4566653
No 180
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.87 E-value=0.0029 Score=71.22 Aligned_cols=25 Identities=32% Similarity=0.566 Sum_probs=23.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 437 IVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 437 eivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
+.++|+||||+|||||+++|+|.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 6799999999999999999999873
No 181
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.85 E-value=0.004 Score=66.69 Aligned_cols=36 Identities=17% Similarity=0.217 Sum_probs=27.7
Q ss_pred ccCCCC-CCCCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 426 QVDRTP-LEPPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 426 ~vd~~~-~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
.+++++ ....|.+++|.||+||||||++++|+..+.
T Consensus 15 ~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 15 TENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp -----CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 344443 245899999999999999999999999887
No 182
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.84 E-value=0.0032 Score=65.11 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 436 PIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 436 GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
+.+++|+|++|||||||.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998875
No 183
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.77 E-value=0.0038 Score=62.08 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=21.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
+++|+|++||||||+.+.|+..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999987643
No 184
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.76 E-value=0.0047 Score=61.43 Aligned_cols=24 Identities=38% Similarity=0.627 Sum_probs=21.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
.++|+|++|+|||||++.|+|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 589999999999999999998653
No 185
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.64 E-value=0.0048 Score=62.49 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcc
Q psy5893 435 PPIVVAVVGPPQVGKSTLIRCLIKN 459 (1182)
Q Consensus 435 ~GeivaIvGpsGsGKSTLLrlL~Gl 459 (1182)
.|.+++|+|++||||||+.++|+..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999853
No 186
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.63 E-value=0.0059 Score=61.38 Aligned_cols=26 Identities=27% Similarity=0.539 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 436 PIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 436 GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
|.++.|+|+|||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998765
No 187
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.62 E-value=0.0044 Score=69.07 Aligned_cols=28 Identities=21% Similarity=0.144 Sum_probs=26.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHccCCC
Q psy5893 435 PPIVVAVVGPPQVGKSTLIRCLIKNFTK 462 (1182)
Q Consensus 435 ~GeivaIvGpsGsGKSTLLrlL~Gl~~~ 462 (1182)
+|++++|+|+||+||||++..|++++.+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~ 124 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG 124 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 8999999999999999999999999974
No 188
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.44 E-value=0.0068 Score=59.77 Aligned_cols=19 Identities=37% Similarity=0.641 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q psy5893 438 VVAVVGPPQVGKSTLIRCL 456 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL 456 (1182)
+++|+||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
No 189
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.42 E-value=0.0063 Score=64.03 Aligned_cols=29 Identities=24% Similarity=0.371 Sum_probs=23.8
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHH-HccCC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCL-IKNFT 461 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL-~Gl~~ 461 (1182)
+++|++++|+||||||||||+..| .++..
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~~ 49 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNGLK 49 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 789999999999999999995544 44443
No 190
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=95.41 E-value=0.011 Score=67.14 Aligned_cols=34 Identities=26% Similarity=0.491 Sum_probs=25.2
Q ss_pred cccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHc--cCC
Q psy5893 423 HVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIK--NFT 461 (1182)
Q Consensus 423 ~i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~G--l~~ 461 (1182)
+++.++++ ++ .++|||++||||||||++|+| +++
T Consensus 26 ~l~~i~~~--lp---~I~vvG~~~sGKSSLln~l~g~~~lp 61 (360)
T 3t34_A 26 ALPTLWDS--LP---AIAVVGGQSSGKSSVLESIVGKDFLP 61 (360)
T ss_dssp CC----CC--CC---EEEEECBTTSSHHHHHHHHHTSCCSC
T ss_pred cccccccc--CC---EEEEECCCCCcHHHHHHHHhCCCcCC
Confidence 45555555 44 899999999999999999999 445
No 191
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.41 E-value=0.0079 Score=60.76 Aligned_cols=26 Identities=35% Similarity=0.466 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 436 PIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 436 GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
|-+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999987543
No 192
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.40 E-value=0.0083 Score=60.91 Aligned_cols=27 Identities=33% Similarity=0.628 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 434 PPPIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 434 ~~GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
..|.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 457799999999999999999998644
No 193
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.38 E-value=0.0095 Score=61.00 Aligned_cols=27 Identities=22% Similarity=0.544 Sum_probs=24.8
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHcc
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKN 459 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl 459 (1182)
.+.|.+++|+|++||||||+.++|+..
T Consensus 7 ~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 7 QPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 567889999999999999999999876
No 194
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.37 E-value=0.0065 Score=61.53 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
.++|||++||||||||+.|++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999964
No 195
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.35 E-value=0.008 Score=60.38 Aligned_cols=23 Identities=39% Similarity=0.654 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
.++|+|++|+|||||++.|+|..
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~~ 31 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGEN 31 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
No 196
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.33 E-value=0.0078 Score=67.30 Aligned_cols=32 Identities=22% Similarity=0.152 Sum_probs=23.8
Q ss_pred EEEEcCCCCCHHHHHHHHHc-cCCCCCCcccccCc
Q psy5893 439 VAVVGPPQVGKSTLIRCLIK-NFTKTPLSVIKGPV 472 (1182)
Q Consensus 439 vaIvGpsGsGKSTLLrlL~G-l~~~~~~SGii~wd 472 (1182)
+.|+||||+|||||+++|++ ++.+ ..|.+.+.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~--~~g~i~~~ 71 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGP--GVYRLKID 71 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCT--TCCC----
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCC--CCCeEEec
Confidence 89999999999999999999 7763 33444443
No 197
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.33 E-value=0.009 Score=63.64 Aligned_cols=28 Identities=36% Similarity=0.616 Sum_probs=24.6
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
-.+|.+++|+|++||||||+.++|++.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4678999999999999999999999743
No 198
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.28 E-value=0.007 Score=62.56 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 437 IVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 437 eivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
.+++|+|+||||||||++.|++.+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 4789999999999999999998765
No 199
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.22 E-value=0.0075 Score=68.37 Aligned_cols=29 Identities=24% Similarity=0.337 Sum_probs=27.3
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
+..|.+++|+|++|+|||||++.|++++.
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999999999886
No 200
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.18 E-value=0.012 Score=60.44 Aligned_cols=26 Identities=15% Similarity=0.258 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 435 PPIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 435 ~GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
.|-+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999876
No 201
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.17 E-value=0.0094 Score=60.88 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
+++|+|++||||||+.+.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998543
No 202
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.16 E-value=0.0088 Score=62.56 Aligned_cols=23 Identities=35% Similarity=0.736 Sum_probs=20.3
Q ss_pred EEEEcCCCCCHHHHHHHHHccCC
Q psy5893 439 VAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 439 vaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
++|+||||||||||++.|...++
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 78999999999999999976554
No 203
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.14 E-value=0.0041 Score=64.36 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=22.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
+++|+|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998775
No 204
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.06 E-value=0.0079 Score=67.01 Aligned_cols=26 Identities=42% Similarity=0.522 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 435 PPIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 435 ~GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
.+.+++|||++|||||||++.|.|..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 34589999999999999999999974
No 205
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.05 E-value=0.012 Score=59.45 Aligned_cols=28 Identities=29% Similarity=0.228 Sum_probs=23.7
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
...+.+++|+|++||||||+.+.|+..+
T Consensus 8 ~~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 8 FMLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp TCCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 3457789999999999999999998543
No 206
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.03 E-value=0.008 Score=64.96 Aligned_cols=29 Identities=31% Similarity=0.489 Sum_probs=26.1
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
...|.++.|+|+|||||||+.+.|+..+.
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56788999999999999999999998765
No 207
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.02 E-value=0.0056 Score=71.08 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=32.2
Q ss_pred cccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 425 PQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 425 ~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
..+|....+.+|+.++|+||+|+|||||+++|++.+.
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 3456666699999999999999999999999998874
No 208
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.01 E-value=0.012 Score=61.93 Aligned_cols=26 Identities=19% Similarity=0.377 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 436 PIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 436 GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
..+.+|+|||||||||+|.+|.-++.
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 36999999999999999999875543
No 209
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.01 E-value=0.012 Score=61.47 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHc
Q psy5893 436 PIVVAVVGPPQVGKSTLIRCLIK 458 (1182)
Q Consensus 436 GeivaIvGpsGsGKSTLLrlL~G 458 (1182)
+-+++|+|++||||||++++|+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999997
No 210
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.01 E-value=0.012 Score=58.94 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHc
Q psy5893 437 IVVAVVGPPQVGKSTLIRCLIK 458 (1182)
Q Consensus 437 eivaIvGpsGsGKSTLLrlL~G 458 (1182)
.+++|+|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
No 211
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.91 E-value=0.014 Score=59.31 Aligned_cols=27 Identities=26% Similarity=0.474 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 434 PPPIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 434 ~~GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
.++-+++|+|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 457799999999999999999998654
No 212
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.90 E-value=0.01 Score=64.29 Aligned_cols=25 Identities=44% Similarity=0.670 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 436 PIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 436 GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
+-+++|+||+||||||+.++|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999554
No 213
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.89 E-value=0.014 Score=59.10 Aligned_cols=26 Identities=19% Similarity=0.124 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 435 PPIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 435 ~GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
.+.+++|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998654
No 214
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.88 E-value=0.014 Score=60.04 Aligned_cols=27 Identities=22% Similarity=0.209 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 435 PPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 435 ~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
+|-+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999998665
No 215
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.87 E-value=0.014 Score=59.67 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcc
Q psy5893 435 PPIVVAVVGPPQVGKSTLIRCLIKN 459 (1182)
Q Consensus 435 ~GeivaIvGpsGsGKSTLLrlL~Gl 459 (1182)
...+++|+|++||||||+.++|+..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4568999999999999999999975
No 216
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=94.85 E-value=0.013 Score=66.30 Aligned_cols=23 Identities=22% Similarity=0.418 Sum_probs=20.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHc
Q psy5893 436 PIVVAVVGPPQVGKSTLIRCLIK 458 (1182)
Q Consensus 436 GeivaIvGpsGsGKSTLLrlL~G 458 (1182)
+.+++|+|||||||||||.+|+.
T Consensus 23 ~~~~~i~G~NGsGKS~lleAi~~ 45 (339)
T 3qkt_A 23 EGINLIIGQNGSGKSSLLDAILV 45 (339)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999998743
No 217
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.79 E-value=0.012 Score=71.07 Aligned_cols=27 Identities=30% Similarity=0.648 Sum_probs=25.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 435 PPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 435 ~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
+|.++.|+||||+|||||+++|++++.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999999999986
No 218
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.77 E-value=0.017 Score=59.69 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=24.5
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 434 PPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 434 ~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
..|-+++|+|++||||||+.+.|+..+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999987543
No 219
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.77 E-value=0.014 Score=58.85 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
+++|+|++||||||+.+.|+..+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987654
No 220
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.74 E-value=0.016 Score=59.86 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=24.5
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 434 PPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 434 ~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
..|-+++|+|++||||||+.+.|+..+.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999987543
No 221
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.67 E-value=0.014 Score=61.90 Aligned_cols=24 Identities=21% Similarity=0.283 Sum_probs=22.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
.++|||++|+|||||++.|+|...
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc
Confidence 589999999999999999999765
No 222
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.54 E-value=0.014 Score=58.77 Aligned_cols=24 Identities=38% Similarity=0.502 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
+++|+|++||||||+.+.|+..+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999987653
No 223
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.53 E-value=0.018 Score=58.17 Aligned_cols=25 Identities=36% Similarity=0.693 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 436 PIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 436 GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
+-+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999987643
No 224
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.51 E-value=0.014 Score=71.24 Aligned_cols=36 Identities=19% Similarity=0.289 Sum_probs=30.5
Q ss_pred cccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCCC
Q psy5893 425 PQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTK 462 (1182)
Q Consensus 425 ~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~ 462 (1182)
..+++. +..|..+.|+||||+|||||+++|++++++
T Consensus 51 ~~l~~~--i~~g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 51 EVIKTA--ANQKRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp HHHHHH--HHTTCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred hhcccc--ccCCCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 334444 678899999999999999999999999984
No 225
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.47 E-value=0.017 Score=62.55 Aligned_cols=24 Identities=17% Similarity=0.295 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
+++|+||||||||||.+.|++.+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 689999999999999999987653
No 226
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.46 E-value=0.017 Score=63.97 Aligned_cols=28 Identities=21% Similarity=0.393 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
...|.++.|+||||||||||.+.|+..+
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3457899999999999999999998654
No 227
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.42 E-value=0.02 Score=58.28 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
+++|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998765
No 228
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.34 E-value=0.022 Score=58.05 Aligned_cols=26 Identities=23% Similarity=0.471 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 435 PPIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 435 ~GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
.+-+++|+|++||||||+.+.|+..+
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998754
No 229
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.26 E-value=0.018 Score=59.05 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
+++|.|++||||||+.++|++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999999864
No 230
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.24 E-value=0.021 Score=57.73 Aligned_cols=26 Identities=23% Similarity=0.465 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 436 PIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 436 GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
.-.++|+|++|||||||++.|++-..
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~~ 73 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDSV 73 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34789999999999999999998653
No 231
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.23 E-value=0.018 Score=66.11 Aligned_cols=29 Identities=28% Similarity=0.338 Sum_probs=27.1
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
+++|+++.|+||||||||||+..|++...
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~ 86 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQ 86 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999999998765
No 232
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.22 E-value=0.022 Score=56.11 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
-++|+|++|+|||||++.|.+-..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~~ 29 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQE 29 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC--
T ss_pred EEEEECCCCccHHHHHHHHhcCCC
Confidence 489999999999999999988653
No 233
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.22 E-value=0.021 Score=62.10 Aligned_cols=24 Identities=42% Similarity=0.596 Sum_probs=21.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
.++|+|++|||||||++.|+|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 589999999999999999998754
No 234
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.21 E-value=0.022 Score=55.58 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
-++|+|++|+|||||++.|.+-.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998754
No 235
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.17 E-value=0.026 Score=59.12 Aligned_cols=27 Identities=33% Similarity=0.593 Sum_probs=23.2
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 434 PPPIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 434 ~~GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
.+|-+++|+|++||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 357789999999999999999998754
No 236
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=94.17 E-value=0.02 Score=66.88 Aligned_cols=25 Identities=48% Similarity=0.739 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 437 IVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 437 eivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
-.++|||+|||||||||+.|+|...
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~ 205 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKER 205 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTT
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcc
Confidence 4789999999999999999999853
No 237
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.16 E-value=0.023 Score=55.16 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
-++|+|++|+|||||++.|.+-.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999988644
No 238
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.14 E-value=0.023 Score=54.95 Aligned_cols=23 Identities=48% Similarity=0.567 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
.++|+|++|||||||++.|.+-.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998764
No 239
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.14 E-value=0.019 Score=57.88 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=19.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 435 PPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 435 ~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
.+-+++|+|++||||||+.+.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 467899999999999999999986554
No 240
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.13 E-value=0.02 Score=56.04 Aligned_cols=24 Identities=38% Similarity=0.427 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
-++|+|++|+|||||++.|+|...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCccc
Confidence 478999999999999999987553
No 241
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.12 E-value=0.019 Score=65.89 Aligned_cols=29 Identities=31% Similarity=0.345 Sum_probs=26.0
Q ss_pred CCCCcE--EEEEcCCCCCHHHHHHHHHccCC
Q psy5893 433 EPPPIV--VAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 433 i~~Gei--vaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
+.+|++ ++|+|++||||||+.++|++.+.
T Consensus 19 i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 19 IEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp TTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred hccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 667777 99999999999999999999875
No 242
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=94.11 E-value=0.023 Score=65.28 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
+++|+|++||||||||++|+|...
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~ 204 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQ 204 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc
Confidence 489999999999999999999864
No 243
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.10 E-value=0.024 Score=55.37 Aligned_cols=23 Identities=43% Similarity=0.547 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
-++|+|++|+|||||++.|.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKGT 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998743
No 244
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.06 E-value=0.026 Score=59.45 Aligned_cols=27 Identities=22% Similarity=0.447 Sum_probs=22.4
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 434 PPPIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 434 ~~GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
..+-+++|+|++||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999998654
No 245
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.05 E-value=0.021 Score=58.86 Aligned_cols=25 Identities=32% Similarity=0.335 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 437 IVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 437 eivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
-+++|+|++|||||||+..|++.+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 3789999999999999999998765
No 246
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.04 E-value=0.025 Score=54.93 Aligned_cols=23 Identities=35% Similarity=0.375 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
-++|+|++|+|||||++.|.+-.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998754
No 247
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.02 E-value=0.025 Score=55.32 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
-++|+|++|+|||||++.|.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47899999999999999998754
No 248
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=94.01 E-value=0.026 Score=67.54 Aligned_cols=34 Identities=32% Similarity=0.526 Sum_probs=27.6
Q ss_pred ccccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 424 VPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 424 i~~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
+..+++. ++.| +.|+||||+|||||+++|++...
T Consensus 56 ~~~lg~~--ip~G--vLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 56 FHEMGAR--IPKG--VLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp TTTTSCC--CCSE--EEEECSSSSSHHHHHHHHHHHTT
T ss_pred hhhccCC--CCce--EEEECCCCCCHHHHHHHHHHHhC
Confidence 3344444 6677 89999999999999999999875
No 249
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.01 E-value=0.027 Score=56.96 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998755
No 250
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.00 E-value=0.026 Score=55.33 Aligned_cols=24 Identities=38% Similarity=0.293 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
-++|+|++|+|||||++.|++...
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~~ 27 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQG 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHHhccC
Confidence 378999999999999999987543
No 251
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.99 E-value=0.031 Score=57.60 Aligned_cols=27 Identities=30% Similarity=0.465 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 434 PPPIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 434 ~~GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
..+-+++|+|++||||||+.+.|+..+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998654
No 252
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.98 E-value=0.027 Score=58.56 Aligned_cols=23 Identities=26% Similarity=0.546 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
.++|+||+||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997544
No 253
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.96 E-value=0.026 Score=55.17 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
-++|+|++|+|||||++.|.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998865
No 254
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.96 E-value=0.028 Score=56.34 Aligned_cols=24 Identities=21% Similarity=0.387 Sum_probs=21.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
-++|||++|+|||||++.|.|.+.
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 478999999999999999998776
No 255
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.95 E-value=0.038 Score=54.60 Aligned_cols=27 Identities=30% Similarity=0.466 Sum_probs=23.2
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 434 PPPIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 434 ~~GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
...-.++|+|++|+|||||++.|.+-.
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 455679999999999999999998754
No 256
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.95 E-value=0.026 Score=54.72 Aligned_cols=23 Identities=48% Similarity=0.723 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
.++|+|++|+|||||++.|.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998764
No 257
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.95 E-value=0.026 Score=59.17 Aligned_cols=27 Identities=26% Similarity=0.516 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 435 PPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 435 ~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
.+-+++|+||+||||||+.+.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356789999999999999999986553
No 258
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=93.94 E-value=0.03 Score=62.03 Aligned_cols=29 Identities=28% Similarity=0.484 Sum_probs=26.0
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
+.++..+.|.||+|+|||||+++|++...
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 56788999999999999999999998764
No 259
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.92 E-value=0.028 Score=56.62 Aligned_cols=25 Identities=40% Similarity=0.674 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 436 PIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 436 GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
+-+++|+|++||||||+.+.|+..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998643
No 260
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.91 E-value=0.027 Score=54.90 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
-++|+|++|+|||||++.|.+-..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~~ 28 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSNDF 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999987543
No 261
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.87 E-value=0.027 Score=55.64 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
-++|+|++|+|||||++.|.+-.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998754
No 262
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.87 E-value=0.028 Score=54.77 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
-++|+|++|+|||||++.|.+-.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998743
No 263
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.85 E-value=0.027 Score=56.83 Aligned_cols=24 Identities=38% Similarity=0.540 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 437 IVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 437 eivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
-.++|+|++|+|||||++.|.+-.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998753
No 264
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=93.85 E-value=0.014 Score=69.76 Aligned_cols=28 Identities=21% Similarity=0.158 Sum_probs=25.1
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
..+| +.+|+|+|||||||||.+|..++.
T Consensus 58 f~~g-~n~i~G~NGaGKS~lleAl~~llg 85 (517)
T 4ad8_A 58 LGGG-FCAFTGETGAGKSIIVDALGLLLG 85 (517)
T ss_dssp CCCS-EEEEEESHHHHHHHHTHHHHHHTC
T ss_pred cCCC-eEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4567 999999999999999999988875
No 265
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.85 E-value=0.028 Score=55.08 Aligned_cols=23 Identities=30% Similarity=0.392 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
-++|+|++|+|||||++.|.+-.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998754
No 266
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.84 E-value=0.028 Score=55.58 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
.++|+|++|||||||++.|.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 57899999999999999888754
No 267
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=93.82 E-value=0.033 Score=59.66 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
-+.|+||||+|||||+++|++...
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECcCCCCHHHHHHHHHHHcC
Confidence 388999999999999999998764
No 268
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.82 E-value=0.024 Score=55.95 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
-++|+|++|+|||||++.|.+-.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 269
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=93.80 E-value=0.028 Score=65.44 Aligned_cols=27 Identities=33% Similarity=0.557 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHcc
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKN 459 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl 459 (1182)
+..|..++|||+||+||||||++|+|.
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 566788999999999999999999997
No 270
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.79 E-value=0.034 Score=57.24 Aligned_cols=26 Identities=35% Similarity=0.546 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 435 PPIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 435 ~GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
.+-+++|+|++||||||+.+.|+..+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998554
No 271
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.78 E-value=0.029 Score=55.46 Aligned_cols=23 Identities=39% Similarity=0.544 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
-++|+|++|+|||||++.|.+-.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58899999999999999998763
No 272
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.77 E-value=0.031 Score=58.19 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
.++|+||+||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997654
No 273
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.77 E-value=0.029 Score=56.21 Aligned_cols=24 Identities=29% Similarity=0.438 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
-++|+|++|+|||||++.|.+-..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~~ 32 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDTF 32 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC
Confidence 589999999999999999998643
No 274
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.74 E-value=0.018 Score=64.67 Aligned_cols=29 Identities=24% Similarity=0.407 Sum_probs=24.9
Q ss_pred CCCCcE--EEEEcCCCCCHHHHHHHHHccCC
Q psy5893 433 EPPPIV--VAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 433 i~~Gei--vaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
+..|.+ +.|.||+|+||||++++|++.+.
T Consensus 41 i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 41 VDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp HHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 445555 89999999999999999999876
No 275
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.74 E-value=0.027 Score=56.11 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
+++|+|++||||||+.+.|+..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998754
No 276
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.74 E-value=0.029 Score=56.21 Aligned_cols=23 Identities=43% Similarity=0.602 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
.++|+|++|||||||++.|.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 68999999999999999998864
No 277
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.70 E-value=0.035 Score=55.49 Aligned_cols=24 Identities=25% Similarity=0.218 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 437 IVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 437 eivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
++++|+|++||||||+.++|+..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998743
No 278
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.66 E-value=0.032 Score=54.38 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
-++|+|++|+|||||++.|.+-.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998643
No 279
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=93.66 E-value=0.031 Score=55.94 Aligned_cols=23 Identities=39% Similarity=0.450 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
-++|+|++|+|||||++.|.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 37899999999999999998864
No 280
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.64 E-value=0.032 Score=55.67 Aligned_cols=23 Identities=48% Similarity=0.580 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
-++|+|++|+|||||++.|.+-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998754
No 281
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.63 E-value=0.033 Score=65.35 Aligned_cols=28 Identities=21% Similarity=0.144 Sum_probs=26.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHccCCC
Q psy5893 435 PPIVVAVVGPPQVGKSTLIRCLIKNFTK 462 (1182)
Q Consensus 435 ~GeivaIvGpsGsGKSTLLrlL~Gl~~~ 462 (1182)
+|.+++|+|++||||||++..|++++.+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~ 124 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG 124 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 8899999999999999999999999973
No 282
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.60 E-value=0.029 Score=62.69 Aligned_cols=29 Identities=31% Similarity=0.397 Sum_probs=26.5
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccCCC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNFTK 462 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~ 462 (1182)
.+ |.+++|+|++|+||||++..|++.+..
T Consensus 96 ~~-~~vi~i~G~~G~GKTT~~~~la~~~~~ 124 (297)
T 1j8m_F 96 KI-PYVIMLVGVQGTGKTTTAGKLAYFYKK 124 (297)
T ss_dssp SS-SEEEEEECSSCSSTTHHHHHHHHHHHH
T ss_pred CC-CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 55 999999999999999999999999873
No 283
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.58 E-value=0.036 Score=55.05 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
+++|+|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998744
No 284
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.57 E-value=0.033 Score=55.56 Aligned_cols=23 Identities=17% Similarity=0.263 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
-++|+|++|+|||||++.|.+-.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998743
No 285
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.57 E-value=0.034 Score=70.14 Aligned_cols=29 Identities=28% Similarity=0.541 Sum_probs=27.3
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
+.+|..+.|+||||||||||+++|++.+.
T Consensus 235 i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 235 VKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred CCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999875
No 286
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=93.53 E-value=0.029 Score=56.65 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 437 IVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 437 eivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
-.++|+|++|+|||||++.|.+-.
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~~ 40 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASED 40 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998753
No 287
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.52 E-value=0.036 Score=54.78 Aligned_cols=23 Identities=26% Similarity=0.561 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
-++|+|++|+|||||++.|.+-.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 47899999999999999998754
No 288
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.48 E-value=0.035 Score=56.14 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
-++|+|++|+||||||+.|.+-..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~~ 50 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNEF 50 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 478999999999999999987543
No 289
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.43 E-value=0.037 Score=54.26 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 436 PIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 436 GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
.-.++|+|++|+|||||++.|.+-.
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999997643
No 290
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.43 E-value=0.036 Score=54.63 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
-++|+|++|+|||||++.|.+-.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998643
No 291
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.41 E-value=0.037 Score=53.93 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHHccC
Q psy5893 439 VAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 439 vaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
++|+|++|+|||||++.|.+-.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999997643
No 292
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=93.39 E-value=0.031 Score=62.38 Aligned_cols=27 Identities=44% Similarity=0.523 Sum_probs=24.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 434 PPPIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 434 ~~GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
++..+|+|+|++|||||||++.|.|--
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 456789999999999999999999864
No 293
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=93.37 E-value=0.036 Score=59.68 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 437 IVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 437 eivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
-.|+|||.+|+|||||++.|.|--.
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSCC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3689999999999999999998654
No 294
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.35 E-value=0.035 Score=56.23 Aligned_cols=24 Identities=42% Similarity=0.479 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 437 IVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 437 eivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
-+++|+|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999998754
No 295
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=93.34 E-value=0.039 Score=60.72 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
.++|+|++|||||||++.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
No 296
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=93.30 E-value=0.047 Score=56.65 Aligned_cols=27 Identities=19% Similarity=0.288 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 435 PPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 435 ~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
.+..+.|.||+|+|||||++.|+..+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 567899999999999999999987664
No 297
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.30 E-value=0.039 Score=54.64 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
-++|+|++|+|||||++.|.+-..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~~ 35 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGAF 35 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC
Confidence 578999999999999999987543
No 298
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.30 E-value=0.042 Score=59.59 Aligned_cols=26 Identities=35% Similarity=0.521 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 435 PPIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 435 ~GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
.+-+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998764
No 299
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=93.27 E-value=0.03 Score=57.55 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=21.6
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHcc
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKN 459 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl 459 (1182)
.+++ .++|+|++|||||||++.|.+-
T Consensus 23 ~~~~-ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 23 KKTG-KLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp TCCE-EEEEEEETTSSHHHHHHHHSCC
T ss_pred CCCc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4444 5789999999999999999863
No 300
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.25 E-value=0.045 Score=58.84 Aligned_cols=26 Identities=31% Similarity=0.310 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 435 PPIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 435 ~GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
++-+++|+||+||||||+.+.|+..+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 56689999999999999999997543
No 301
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.23 E-value=0.041 Score=54.64 Aligned_cols=23 Identities=35% Similarity=0.375 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
-++|+|++|+|||||++.|.+-.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 47899999999999999998754
No 302
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.22 E-value=0.028 Score=55.98 Aligned_cols=23 Identities=22% Similarity=0.366 Sum_probs=20.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHc
Q psy5893 436 PIVVAVVGPPQVGKSTLIRCLIK 458 (1182)
Q Consensus 436 GeivaIvGpsGsGKSTLLrlL~G 458 (1182)
.-.++|+|++|+|||||++.|.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999874
No 303
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=93.21 E-value=0.04 Score=56.18 Aligned_cols=25 Identities=24% Similarity=0.289 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 436 PIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 436 GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
.-.++|+|++|+|||||++.|.+-.
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~ 47 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDR 47 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSC
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3478999999999999999998743
No 304
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.21 E-value=0.041 Score=54.17 Aligned_cols=24 Identities=25% Similarity=0.319 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
-++|+|++|+|||||++.|.+-..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~ 40 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKKF 40 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 578999999999999999987643
No 305
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.14 E-value=0.04 Score=63.00 Aligned_cols=23 Identities=43% Similarity=0.518 Sum_probs=20.5
Q ss_pred EEEEcCCCCCHHHHHHHHHccCC
Q psy5893 439 VAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 439 vaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
++|||++|+||||||+.|.+...
T Consensus 40 I~vvG~~g~GKSTLln~L~~~~~ 62 (361)
T 2qag_A 40 LMVVGESGLGKSTLINSLFLTDL 62 (361)
T ss_dssp EEECCCTTSCHHHHHHHHTTCCC
T ss_pred EEEEcCCCCCHHHHHHHHhCCCC
Confidence 59999999999999999987644
No 306
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.11 E-value=0.043 Score=55.19 Aligned_cols=23 Identities=48% Similarity=0.567 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
.++|+|++|+|||||++.|++-.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998754
No 307
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.11 E-value=0.043 Score=54.40 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
-++|+|++|+|||||++.|.+-..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~~ 37 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQF 37 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC
Confidence 478999999999999999987643
No 308
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.09 E-value=0.043 Score=54.75 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
-++|+|++|+|||||++.|.+-.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57899999999999999998754
No 309
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.07 E-value=0.043 Score=58.97 Aligned_cols=26 Identities=23% Similarity=0.468 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 436 PIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 436 GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
.-+++|.|++||||||+.+.|+..+.
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 35799999999999999999987543
No 310
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.06 E-value=0.044 Score=55.65 Aligned_cols=23 Identities=35% Similarity=0.375 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
-++|+|++|+|||||++.|.+-.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 57899999999999999998654
No 311
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.01 E-value=0.057 Score=53.45 Aligned_cols=27 Identities=22% Similarity=0.438 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 435 PPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 435 ~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
.+..+.|.||+|+|||||++.|+..+.
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 345688999999999999999988764
No 312
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.99 E-value=0.045 Score=55.27 Aligned_cols=24 Identities=38% Similarity=0.483 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 437 IVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 437 eivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
--++|+|++|+|||||++.|.+-.
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKGT 32 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Confidence 358999999999999999998743
No 313
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.98 E-value=0.048 Score=57.60 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
+++|+|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998644
No 314
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.95 E-value=0.046 Score=56.46 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 437 IVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 437 eivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
-.++|+|++|+|||||++.|.+-..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~~ 37 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDSV 37 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3588999999999999999998653
No 315
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.94 E-value=0.047 Score=55.62 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
.++|+|++|+|||||++.|.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998764
No 316
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=92.93 E-value=0.047 Score=54.94 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
-++|+|++|+|||||++.|.+-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48899999999999999998754
No 317
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=92.90 E-value=0.055 Score=59.00 Aligned_cols=28 Identities=29% Similarity=0.536 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 434 PPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 434 ~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
.++..+.|.||+|+|||||+++|++...
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 3567889999999999999999998653
No 318
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=92.88 E-value=0.049 Score=54.97 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
-++|+|++|+|||||++.|.+-.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57899999999999999998764
No 319
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=92.88 E-value=0.06 Score=66.53 Aligned_cols=30 Identities=30% Similarity=0.299 Sum_probs=26.9
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccCCC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNFTK 462 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~~~ 462 (1182)
+.++..++|+|++|+|||||++.|++...+
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~ 35 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGA 35 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCC
Confidence 578899999999999999999999987653
No 320
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=92.87 E-value=0.05 Score=60.67 Aligned_cols=23 Identities=52% Similarity=0.726 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
+++|||.+|+|||||++.|.|--
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68999999999999999999864
No 321
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.87 E-value=0.049 Score=54.09 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
-++|+|++|+|||||++.|.+-.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998643
No 322
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.85 E-value=0.049 Score=54.82 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
-++|+|++|+|||||++.|.+-.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 323
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.82 E-value=0.053 Score=56.86 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 435 PPIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 435 ~GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
+|-+++|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678999999999999999998654
No 324
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=92.81 E-value=0.046 Score=62.38 Aligned_cols=29 Identities=28% Similarity=0.410 Sum_probs=25.2
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
+++|+++.|.||||||||||+..|+....
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67999999999999999999888776543
No 325
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.78 E-value=0.049 Score=60.70 Aligned_cols=28 Identities=14% Similarity=0.401 Sum_probs=24.9
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 434 PPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 434 ~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
..+..+.|.||+|+|||||++.+++.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4577899999999999999999998775
No 326
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=92.76 E-value=0.05 Score=55.22 Aligned_cols=23 Identities=26% Similarity=0.550 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
-++|+|++|+|||||++.|.+-.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998764
No 327
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.75 E-value=0.053 Score=54.09 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
.++|+|++|+|||||++.|.+-.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 57899999999999999998653
No 328
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=92.72 E-value=0.041 Score=56.47 Aligned_cols=23 Identities=39% Similarity=0.322 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
.++|||++|+|||||++.|+|..
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~~ 47 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGLQ 47 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58999999999999999997654
No 329
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=92.72 E-value=0.052 Score=55.11 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcc
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKN 459 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl 459 (1182)
-++|+|++|||||||++.+++-
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999655543
No 330
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=92.71 E-value=0.051 Score=55.56 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
-++|+|++|+|||||++.|.+-..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~~ 49 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGEF 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCCC
Confidence 589999999999999999998653
No 331
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=92.70 E-value=0.051 Score=61.72 Aligned_cols=27 Identities=37% Similarity=0.528 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 435 PPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 435 ~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
..-.++|+|++|+||||||+.|+|...
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~ 192 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKP 192 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 455899999999999999999998753
No 332
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=92.70 E-value=0.055 Score=55.14 Aligned_cols=23 Identities=17% Similarity=0.398 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
-++|+|++|+|||||++.|.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 333
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=92.70 E-value=0.055 Score=58.84 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
.++|+|.+|||||||++.|+|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999874
No 334
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.70 E-value=0.057 Score=56.42 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcc
Q psy5893 436 PIVVAVVGPPQVGKSTLIRCLIKN 459 (1182)
Q Consensus 436 GeivaIvGpsGsGKSTLLrlL~Gl 459 (1182)
.-+++|+|++||||||+.++|+..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 347999999999999999999875
No 335
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.69 E-value=0.056 Score=56.39 Aligned_cols=23 Identities=22% Similarity=0.586 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
.++|+|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998644
No 336
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.67 E-value=0.054 Score=53.92 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcc
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKN 459 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl 459 (1182)
.++|+|++|+|||||++.|.+-
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5789999999999999999843
No 337
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=92.65 E-value=0.051 Score=54.42 Aligned_cols=25 Identities=16% Similarity=0.301 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 436 PIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 436 GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
.-.++|+|++|+|||||++.|.+-.
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998754
No 338
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=92.64 E-value=0.045 Score=59.65 Aligned_cols=23 Identities=43% Similarity=0.537 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
.++|||++|+|||||++.|.+--
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999987643
No 339
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=92.63 E-value=0.049 Score=59.55 Aligned_cols=28 Identities=29% Similarity=0.427 Sum_probs=24.7
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 434 PPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 434 ~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
.+...+.|+||+|+|||||+++|++.+.
T Consensus 45 ~~~~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 45 RPIGSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp SCSEEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCcCHHHHHHHHHHHHc
Confidence 3456899999999999999999999875
No 340
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.62 E-value=0.056 Score=56.02 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
+++|+|++|+|||||++.|++-.
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998764
No 341
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.62 E-value=0.04 Score=64.80 Aligned_cols=28 Identities=25% Similarity=0.360 Sum_probs=25.8
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 434 PPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 434 ~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
.++.+++|+||+||||||++..|++.+.
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999999886
No 342
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=92.61 E-value=0.061 Score=54.89 Aligned_cols=25 Identities=16% Similarity=0.414 Sum_probs=22.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHccCCC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNFTK 462 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~~~ 462 (1182)
-++|+|++|+|||||++.|.+-+.+
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~~ 46 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMSP 46 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCCG
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCC
Confidence 5899999999999999999986653
No 343
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.60 E-value=0.055 Score=54.77 Aligned_cols=23 Identities=17% Similarity=0.388 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
-++|+|++|+|||||++.|.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 344
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=92.59 E-value=0.064 Score=56.98 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=21.8
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHc
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIK 458 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~G 458 (1182)
+..|+.++|+||+||||||++.++..
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 34688999999999999998876653
No 345
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.58 E-value=0.057 Score=53.55 Aligned_cols=24 Identities=33% Similarity=0.414 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 437 IVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 437 eivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
--++|+|++|+|||||++.|.+-.
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999998643
No 346
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=92.58 E-value=0.056 Score=55.35 Aligned_cols=22 Identities=36% Similarity=0.448 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcc
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKN 459 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl 459 (1182)
.++|||++|+|||||++.++|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999874
No 347
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.56 E-value=0.061 Score=59.20 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHc
Q psy5893 435 PPIVVAVVGPPQVGKSTLIRCLIK 458 (1182)
Q Consensus 435 ~GeivaIvGpsGsGKSTLLrlL~G 458 (1182)
..-+++|+|++||||||+.+.|..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999984
No 348
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=92.55 E-value=0.055 Score=58.05 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 437 IVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 437 eivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
-.|+|+|++|||||||++.|.|-.
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999754
No 349
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=92.51 E-value=0.057 Score=55.25 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
-++|+|++|+|||||++.|.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 350
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=92.48 E-value=0.059 Score=54.36 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
-++|+|++|+|||||++.|.+-.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998643
No 351
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=92.46 E-value=0.06 Score=54.02 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
.++|+|++|+||||||+.|.+-.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58899999999999999998754
No 352
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.44 E-value=0.06 Score=55.07 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 437 IVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 437 eivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
--++|+|++|+|||||++.|.+-.
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 468999999999999999998654
No 353
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=92.44 E-value=0.067 Score=60.00 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=24.2
Q ss_pred CCc--EEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 435 PPI--VVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 435 ~Ge--ivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
.|. .+.|.||+|+|||||++.+++.+.
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 455 899999999999999999999876
No 354
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=92.42 E-value=0.061 Score=54.45 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
-++|+|++|+|||||++.|.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 355
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.41 E-value=0.062 Score=54.08 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcc
Q psy5893 437 IVVAVVGPPQVGKSTLIRCLIKN 459 (1182)
Q Consensus 437 eivaIvGpsGsGKSTLLrlL~Gl 459 (1182)
-.++|+|++|+|||||++.|.+-
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999854
No 356
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=92.41 E-value=0.061 Score=59.20 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
.++|+|++||||||||+.|+|.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999864
No 357
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=92.40 E-value=0.07 Score=54.77 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 437 IVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 437 eivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
..+.|.||+|+|||||+++|+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6789999999999999999998765
No 358
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.40 E-value=0.076 Score=56.30 Aligned_cols=27 Identities=41% Similarity=0.679 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 434 PPPIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 434 ~~GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
..+-+++|+|++||||||+.+.|+..+
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345689999999999999999998654
No 359
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.40 E-value=0.072 Score=56.95 Aligned_cols=29 Identities=31% Similarity=0.447 Sum_probs=24.8
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
...+.++.|+||+||||+|+.+.|+..+.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 45677899999999999999999986653
No 360
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=92.36 E-value=0.062 Score=54.32 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
-++|+|++|+|||||++.|.+-.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998654
No 361
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=92.36 E-value=0.063 Score=55.07 Aligned_cols=23 Identities=35% Similarity=0.497 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
-++|+|++|+|||||++.|.+-.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47899999999999999998654
No 362
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=92.34 E-value=0.063 Score=54.37 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
-++|+|++|+|||||++.|.+-..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~~ 48 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGEI 48 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 588999999999999999987643
No 363
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=92.33 E-value=0.064 Score=61.32 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHc
Q psy5893 436 PIVVAVVGPPQVGKSTLIRCLIK 458 (1182)
Q Consensus 436 GeivaIvGpsGsGKSTLLrlL~G 458 (1182)
+.+++|+|||||||||+|-+|.=
T Consensus 25 ~gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 25 KGIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 37999999999999999999875
No 364
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=92.33 E-value=0.05 Score=54.92 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 437 IVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 437 eivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
-.++|+|++|+|||||++.|.+-.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999998765
No 365
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=92.29 E-value=0.057 Score=62.14 Aligned_cols=22 Identities=50% Similarity=0.748 Sum_probs=20.6
Q ss_pred EEEEcCCCCCHHHHHHHHHccC
Q psy5893 439 VAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 439 vaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
++|||++|+|||||+++|++..
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999999874
No 366
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=92.27 E-value=0.059 Score=54.06 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 437 IVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 437 eivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
-.++|+|++|+|||||++.|.+-.
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTTS
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999998753
No 367
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=92.27 E-value=0.065 Score=54.72 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 437 IVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 437 eivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
--++|+|++|+|||||++.|.+-.
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 468999999999999999998754
No 368
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.24 E-value=0.065 Score=54.45 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 437 IVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 437 eivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
--++|+|++|+|||||++.|.+-.
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 358999999999999999998753
No 369
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=92.23 E-value=0.058 Score=54.41 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 437 IVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 437 eivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
-.|+|+|++|+|||||++.|.+-..
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~~~ 42 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPAQS 42 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCCC-
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3689999999999999999987543
No 370
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=92.22 E-value=0.06 Score=56.45 Aligned_cols=25 Identities=24% Similarity=0.474 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 436 PIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 436 GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
.-.++|+|++|+|||||++.|.+-.
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999998753
No 371
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=92.19 E-value=0.059 Score=54.81 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
-++|+|++|+|||||++.|.+-.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 372
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.19 E-value=0.045 Score=60.75 Aligned_cols=27 Identities=22% Similarity=0.345 Sum_probs=20.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 435 PPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 435 ~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
.+-+++|.||+||||||+.+.|...+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 355899999999999999999987543
No 373
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=92.17 E-value=0.072 Score=60.36 Aligned_cols=27 Identities=19% Similarity=0.204 Sum_probs=25.5
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHcc
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKN 459 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl 459 (1182)
+++|+++.|.||+|||||||+..|+..
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999999998875
No 374
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.13 E-value=0.07 Score=58.37 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcc
Q psy5893 437 IVVAVVGPPQVGKSTLIRCLIKN 459 (1182)
Q Consensus 437 eivaIvGpsGsGKSTLLrlL~Gl 459 (1182)
.++.|+|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999863
No 375
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.13 E-value=0.067 Score=55.41 Aligned_cols=23 Identities=26% Similarity=0.587 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
-++|+|++|+|||||++.|.+-.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47899999999999999887654
No 376
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.11 E-value=0.053 Score=53.84 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
-++|+|++|+|||||++.|.+-.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998753
No 377
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=92.07 E-value=0.035 Score=57.42 Aligned_cols=24 Identities=33% Similarity=0.374 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 437 IVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 437 eivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
-.++|+|++|+|||||++.|.|-.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999864
No 378
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.06 E-value=0.078 Score=62.28 Aligned_cols=29 Identities=21% Similarity=0.313 Sum_probs=27.2
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
+++|+++.|.|+||+|||||+..|++...
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~ 228 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVA 228 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999999998765
No 379
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=92.05 E-value=0.07 Score=58.03 Aligned_cols=24 Identities=38% Similarity=0.546 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
.++|+|++|||||||++.|+|...
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~~ 30 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTKQ 30 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Confidence 589999999999999999998543
No 380
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=92.03 E-value=0.066 Score=55.68 Aligned_cols=25 Identities=32% Similarity=0.559 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 436 PIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 436 GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
+-+++|+|++||||||+.++|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578999999999999999998865
No 381
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=92.03 E-value=0.074 Score=54.05 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 437 IVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 437 eivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
--++|+|++|+|||||++.|.+-.
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC--
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 358999999999999999998654
No 382
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=92.03 E-value=0.073 Score=54.91 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
-++|+|++|+||||||+.|.+-.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 383
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.01 E-value=0.07 Score=54.90 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
-++|+|++|+|||||++.|.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 384
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=91.98 E-value=0.089 Score=56.90 Aligned_cols=28 Identities=29% Similarity=0.589 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 434 PPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 434 ~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
.++..+.|.||+|+|||||+++|+..+.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 4566789999999999999999998764
No 385
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=91.94 E-value=0.076 Score=58.11 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
.++|+|.+|||||||++.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 386
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=91.94 E-value=0.08 Score=61.64 Aligned_cols=27 Identities=44% Similarity=0.597 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 434 PPPIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 434 ~~GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
..+.++.|+|++||||||+.+.|+..+
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 457899999999999999999987643
No 387
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.92 E-value=0.085 Score=56.02 Aligned_cols=27 Identities=30% Similarity=0.407 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 435 PPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 435 ~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
.|-+++|.|++||||||+++.|...+.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999987765
No 388
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=91.89 E-value=0.072 Score=52.82 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 436 PIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 436 GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
+..+.|+||+|+|||||++.|+..+.
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 45678999999999999999988764
No 389
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=91.89 E-value=0.076 Score=53.82 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
-++|+|++|+|||||++.|.+-.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 58899999999999998887643
No 390
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=91.89 E-value=0.071 Score=58.02 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
.++|||.+|+||||||+.|+|...
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~~ 51 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCCc
Confidence 689999999999999999998753
No 391
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=91.86 E-value=0.075 Score=55.14 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
-++|+|++|+|||||++.|.+-..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~~ 53 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDCF 53 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 588999999999999999998643
No 392
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=91.79 E-value=0.078 Score=55.02 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
.++|+|++|+|||||++.|.+-.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~~ 58 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADGA 58 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58899999999999999998743
No 393
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=91.77 E-value=0.079 Score=54.49 Aligned_cols=24 Identities=29% Similarity=0.279 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 437 IVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 437 eivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
-.++|+|++|+|||||++.|.+-.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999998754
No 394
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=91.76 E-value=0.097 Score=53.57 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 437 IVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 437 eivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
..+.|.||+|+|||||++.++..+.
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4789999999999999999987664
No 395
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=91.73 E-value=0.052 Score=54.12 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=9.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
-++|+|++|+|||||++.|.+-.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~~ 32 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSEDA 32 (183)
T ss_dssp EEEEECCCCC-------------
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999987643
No 396
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.72 E-value=0.1 Score=59.57 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 435 PPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 435 ~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
.+.+++|+||+|||||||...|+..+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 456899999999999999999998765
No 397
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.64 E-value=0.083 Score=60.25 Aligned_cols=25 Identities=32% Similarity=0.615 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 437 IVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 437 eivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
-+++|+||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3789999999999999999998764
No 398
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=91.63 E-value=0.098 Score=56.59 Aligned_cols=27 Identities=22% Similarity=0.397 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 435 PPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 435 ~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
.|-+++|.|++||||||+++.|...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999987765
No 399
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=91.62 E-value=0.083 Score=54.09 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
-++|+|++|+|||||++.|.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998754
No 400
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=91.61 E-value=0.079 Score=60.70 Aligned_cols=27 Identities=19% Similarity=0.167 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 435 PPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 435 ~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
.+..++|+||||||||||+++|++...
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~ 60 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY 60 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH
Confidence 466789999999999999999998765
No 401
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=91.59 E-value=0.09 Score=60.49 Aligned_cols=25 Identities=44% Similarity=0.562 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 436 PIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 436 GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
|-.++|||.+|+|||||+++|++-.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~ 26 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAG 26 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Confidence 3468999999999999999999843
No 402
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.50 E-value=0.088 Score=53.20 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
.++|+|++|+|||||++.|.+-.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 403
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.48 E-value=0.096 Score=55.35 Aligned_cols=24 Identities=33% Similarity=0.577 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
++.|+||+||||+|+.+.|+..+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999987654
No 404
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=91.47 E-value=0.077 Score=54.11 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=21.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHcc
Q psy5893 435 PPIVVAVVGPPQVGKSTLIRCLIKN 459 (1182)
Q Consensus 435 ~GeivaIvGpsGsGKSTLLrlL~Gl 459 (1182)
+.-.++|+|++|+|||||++.|.+-
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSS
T ss_pred CccEEEEECCCCCCHHHHHHHHHhC
Confidence 3456899999999999999998653
No 405
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=91.46 E-value=0.087 Score=56.69 Aligned_cols=28 Identities=14% Similarity=0.228 Sum_probs=22.3
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 434 PPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 434 ~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
..|-+++|.|++||||||+++.|...+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5788999999999999999999987764
No 406
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.32 E-value=0.099 Score=54.34 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 437 IVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 437 eivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
-.++|+|.+|+|||||++.|++-.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 368999999999999999888654
No 407
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=91.29 E-value=0.11 Score=55.16 Aligned_cols=27 Identities=15% Similarity=0.281 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 435 PPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 435 ~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
.|-+++|.|++||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999987765
No 408
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=91.26 E-value=0.076 Score=57.37 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 434 PPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 434 ~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
.++-+++|.|+.||||||+++.|+..+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5678999999999999999999887764
No 409
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=91.26 E-value=0.087 Score=58.42 Aligned_cols=27 Identities=15% Similarity=0.133 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 435 PPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 435 ~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
.+..+.|.||+|+|||||+++|++.+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 345788999999999999999998765
No 410
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.25 E-value=0.1 Score=55.53 Aligned_cols=26 Identities=35% Similarity=0.599 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 436 PIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 436 GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
|-+++|.|+.||||||+++.|+..+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 56899999999999999999998764
No 411
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=91.21 E-value=0.12 Score=54.77 Aligned_cols=27 Identities=26% Similarity=0.485 Sum_probs=22.9
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 434 PPPIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 434 ~~GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
..+.-+.|.||+|+|||||+++|+..+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 345568899999999999999999864
No 412
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=91.14 E-value=0.12 Score=55.09 Aligned_cols=28 Identities=21% Similarity=0.280 Sum_probs=25.6
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 434 PPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 434 ~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
..|-+++|.|++||||||+++.|...+.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3688999999999999999999998776
No 413
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=91.12 E-value=0.098 Score=56.58 Aligned_cols=23 Identities=39% Similarity=0.510 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
.++|+|.+|+|||||++.|.|-.
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 414
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=91.08 E-value=0.11 Score=56.46 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
.++|+|++|+|||||++.|.|-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999864
No 415
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=90.96 E-value=0.052 Score=56.03 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
-++|+|++|+|||||++.|++-.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999887543
No 416
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=90.90 E-value=0.1 Score=58.40 Aligned_cols=28 Identities=21% Similarity=0.172 Sum_probs=25.6
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
+++|+++.|.||+|+|||||+..|+...
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 7899999999999999999999888754
No 417
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=90.90 E-value=0.11 Score=54.23 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
-++|+|++|+|||||++.|.+-.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 418
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=90.88 E-value=0.11 Score=53.41 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
-++|+|++|+|||||++.|.+-.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 47899999999999999997654
No 419
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=90.86 E-value=0.078 Score=53.34 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHc
Q psy5893 436 PIVVAVVGPPQVGKSTLIRCLIK 458 (1182)
Q Consensus 436 GeivaIvGpsGsGKSTLLrlL~G 458 (1182)
.-.++|+|++|+|||||++.|.+
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 34689999999999999999864
No 420
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=90.82 E-value=0.11 Score=54.65 Aligned_cols=23 Identities=35% Similarity=0.427 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
.++|||++|+|||||++.+.|..
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~~ 61 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGVH 61 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998743
No 421
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=90.81 E-value=0.11 Score=58.75 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 437 IVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 437 eivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
.+++|+||+|||||||.+.|+..+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999998664
No 422
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=90.73 E-value=0.11 Score=53.36 Aligned_cols=25 Identities=36% Similarity=0.445 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 436 PIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 436 GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
.--++|+|++|+|||||++.|.+-.
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCC
Confidence 3468999999999999999888543
No 423
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=90.70 E-value=0.052 Score=55.07 Aligned_cols=22 Identities=50% Similarity=0.644 Sum_probs=4.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcc
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKN 459 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl 459 (1182)
-++|+|++|+|||||++.|.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999988876
No 424
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=90.70 E-value=0.12 Score=55.02 Aligned_cols=27 Identities=26% Similarity=0.181 Sum_probs=23.2
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 434 PPPIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 434 ~~GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
..|..++|+||||+|||||...|+...
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 357789999999999999999988654
No 425
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=90.69 E-value=0.14 Score=55.00 Aligned_cols=28 Identities=21% Similarity=0.337 Sum_probs=25.1
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 434 PPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 434 ~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
..|-+++|.|++||||||+++.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999999987665
No 426
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=90.68 E-value=0.13 Score=61.30 Aligned_cols=26 Identities=35% Similarity=0.618 Sum_probs=22.4
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
++.| +.|+||||+|||||+++|++..
T Consensus 48 ~p~g--vLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 48 MPKG--ILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp CCSE--EEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCe--EEEECCCCCCHHHHHHHHHHHc
Confidence 4445 7899999999999999999864
No 427
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=90.66 E-value=0.12 Score=53.13 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
-++|+|++|+|||||++.|.+-.
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998654
No 428
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=90.60 E-value=0.13 Score=56.36 Aligned_cols=25 Identities=40% Similarity=0.492 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 437 IVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 437 eivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
-.++|+|.+|+|||||++.|.|-..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 5789999999999999999998764
No 429
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=90.56 E-value=0.14 Score=57.95 Aligned_cols=26 Identities=38% Similarity=0.560 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 436 PIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 436 GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
+-+++|+||+|||||||...|+..+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 34789999999999999999987664
No 430
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=90.54 E-value=0.12 Score=53.71 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
-++|||++|+|||||++.|.+-.
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58899999999999999988754
No 431
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=90.35 E-value=0.11 Score=61.06 Aligned_cols=47 Identities=17% Similarity=0.313 Sum_probs=31.2
Q ss_pred cCCCceeeeeccccccCC-chhhhHHHHHhhhhhhhhhcCCeeEEEecccc
Q psy5893 988 LRMPKVMGVLTHLDMLKN-NKTLKTTKKMLKHRFWTEVYAGAKLFYLSGIV 1037 (1182)
Q Consensus 988 hG~p~v~~vlthld~~~~-~~~l~~~kk~lk~rf~~e~~~g~k~fylsg~~ 1037 (1182)
.|.| ++-|+|..|+... .......++.++..+- ...++.+|+.|...
T Consensus 305 ~~~~-~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~SA~~ 352 (456)
T 4dcu_A 305 AGKA-VVIVVNKWDAVDKDESTMKEFEENIRDHFQ--FLDYAPILFMSALT 352 (456)
T ss_dssp TTCE-EEEEEECGGGSCCCSSHHHHHHHHHHHHCG--GGTTSCEEECCTTT
T ss_pred cCCC-EEEEEEChhcCCCchHHHHHHHHHHHHhcc--cCCCCCEEEEcCCC
Confidence 4544 6788999999864 3455556666555432 24568899988774
No 432
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=90.35 E-value=0.09 Score=66.60 Aligned_cols=32 Identities=25% Similarity=0.457 Sum_probs=28.9
Q ss_pred ccccccccCCCCCCCCCcEEEEEcCCCCCHHHHH
Q psy5893 420 KKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLI 453 (1182)
Q Consensus 420 ~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLL 453 (1182)
..|.+..||.. ++.|.+++|.|.||||||||.
T Consensus 22 r~hNLkni~v~--iP~~~l~viTGvSGSGKSSLa 53 (842)
T 2vf7_A 22 RQHNLKDISVK--VPRDALVVFTGVSGSGKSSLA 53 (842)
T ss_dssp CSTTCCSEEEE--EESSSEEEEESSTTSSHHHHH
T ss_pred cccCCCCeeEE--ecCCCEEEEECCCCCCHHHHH
Confidence 45678888888 999999999999999999997
No 433
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=90.08 E-value=0.17 Score=56.56 Aligned_cols=28 Identities=21% Similarity=0.250 Sum_probs=25.0
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
+++|+++.|.|++|+|||||+..|+...
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999988887543
No 434
>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A*
Probab=89.94 E-value=0.019 Score=61.34 Aligned_cols=88 Identities=17% Similarity=0.182 Sum_probs=54.9
Q ss_pred CCCcccchhccchhhhhhhhhhcccccccCCCCCCcccccccccccceEEecccCccccchhhhhhhheeeeeccCCCCc
Q psy5893 8 PYSVGCAKISRNSLCINIWNWFTKRVYPVCTAPNNEGIHRQEFEIEPITFIECNNDINSMIDISKVADLVLLLIDASFGF 87 (1182)
Q Consensus 8 p~s~~~~~~~~n~l~~~l~~~~tr~l~Pv~~~~~n~~~~~~~~~~k~lt~i~c~~~~~~mi~i~k~ak~vlil~d~~~G~ 87 (1182)
|.|+|++++++||||+||.+...+-+.. -++|+++++||+. |+.++.+..++-.+.. +|+
T Consensus 104 PaTanTlAKiA~GiaDnLlt~~~~A~d~----------------~~pvvlaPaMN~~--M~e~P~t~~nl~~L~~--~G~ 163 (209)
T 1mvl_A 104 PLSANTLGKIAGGLCDNLLTCIIRAWDY----------------TKPLFVAPAMNTL--MWNNPFTERHLLSLDE--LGI 163 (209)
T ss_dssp EECHHHHHHHHHTCCSSHHHHHHHTCCT----------------TSCEEEEECCCHH--HHHSHHHHHHHHHHHH--HTC
T ss_pred cCCHHHHHHHHccccCcHHHHHHHHhcC----------------CCCEEEEECCChh--HhhChhHHHHHHHHHH--CCC
Confidence 7799999999999999998654444322 1789999999997 9998888777765422 332
Q ss_pred ceeEEEEeeeccccCCCccccceeeccccc
Q psy5893 88 EMEIFEFLNICQVHGESTEKSMMEIDGIHG 117 (1182)
Q Consensus 88 ~me~~eflni~qv~Gds~~g~mve~dgi~~ 117 (1182)
. ++.+..-...+|+...|.|.+++.+..
T Consensus 164 ~--ivpP~~g~lacg~~G~gr~~~~~~Iv~ 191 (209)
T 1mvl_A 164 T--LIPPIKKRLASGDYGNGAMAEPSLIYS 191 (209)
T ss_dssp E--ECCCBC---------CCBCCCHHHHHH
T ss_pred E--EeCCccccccCCCcCCCCCCCHHHHHH
Confidence 1 122222223456666667777666553
No 435
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=89.84 E-value=0.17 Score=57.12 Aligned_cols=26 Identities=31% Similarity=0.471 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 436 PIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 436 GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
+.+++|+||+|||||||...|+..+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 45789999999999999999997764
No 436
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=89.81 E-value=0.15 Score=55.60 Aligned_cols=28 Identities=21% Similarity=0.395 Sum_probs=24.1
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 434 PPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 434 ~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
.++..+.|.||+|+|||||+++|+..+.
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 4566789999999999999999988764
No 437
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=89.79 E-value=0.18 Score=55.80 Aligned_cols=26 Identities=46% Similarity=0.602 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 435 PPIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 435 ~GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
.+-.++|+|.+|+|||||++.|.|-.
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCc
Confidence 44578999999999999999999865
No 438
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=89.63 E-value=0.17 Score=51.26 Aligned_cols=22 Identities=27% Similarity=0.584 Sum_probs=20.2
Q ss_pred EEEEcCCCCCHHHHHHHHHccC
Q psy5893 439 VAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 439 vaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
+.|.||+|+|||||++.|+..+
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8899999999999999998765
No 439
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=89.55 E-value=0.21 Score=55.08 Aligned_cols=28 Identities=18% Similarity=0.323 Sum_probs=23.9
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
++++-.+.|.||+|+|||+|.++|+..+
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4556678888999999999999999865
No 440
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=89.54 E-value=0.095 Score=62.20 Aligned_cols=36 Identities=31% Similarity=0.302 Sum_probs=29.1
Q ss_pred ccCCCCCCCCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 426 QVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 426 ~vd~~~~i~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
.+|.-..+-.|+.++|+||||+|||||++.|+....
T Consensus 141 ~ID~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 141 VVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp HHHHHSCEETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred HHHHHhhhccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 444444466899999999999999999999987654
No 441
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=89.33 E-value=0.15 Score=61.19 Aligned_cols=26 Identities=19% Similarity=0.148 Sum_probs=22.9
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHc
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIK 458 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~G 458 (1182)
+..+..+.|+|++||||||+|++|+.
T Consensus 164 L~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 164 LAKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp GGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred cccCceEEEECCCCCCHHHHHHHHHH
Confidence 34578899999999999999999876
No 442
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=89.33 E-value=0.18 Score=52.86 Aligned_cols=34 Identities=26% Similarity=0.347 Sum_probs=26.0
Q ss_pred ccccCCCCC--CCCCcEEEEEcCCCCCHHHHHHHHH
Q psy5893 424 VPQVDRTPL--EPPPIVVAVVGPPQVGKSTLIRCLI 457 (1182)
Q Consensus 424 i~~vd~~~~--i~~GeivaIvGpsGsGKSTLLrlL~ 457 (1182)
++.+|...- +++|+++.|.|++|+|||||+--++
T Consensus 16 i~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 16 IPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred cHHHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 444554433 7899999999999999999976543
No 443
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=89.22 E-value=0.14 Score=65.42 Aligned_cols=32 Identities=25% Similarity=0.421 Sum_probs=28.2
Q ss_pred ccccccccCCCCCCCCCcEEEEEcCCCCCHHHHH
Q psy5893 420 KKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLI 453 (1182)
Q Consensus 420 ~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLL 453 (1182)
..|.+..+|+. +|.+.+++|.|+||||||||.
T Consensus 10 r~hNLkni~~~--ip~~~l~v~tG~SGSGKSsLa 41 (916)
T 3pih_A 10 RVHNLKNITVR--IPKNRLVVITGVSGSGKSSLA 41 (916)
T ss_dssp CSTTCCSBCCE--EETTSEEEEEESTTSSSHHHH
T ss_pred cccccCcceec--cCCCcEEEEECCCCCcHHHHH
Confidence 45677888888 999999999999999999994
No 444
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=89.12 E-value=0.19 Score=58.62 Aligned_cols=25 Identities=36% Similarity=0.525 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 437 IVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 437 eivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
-+++|+||+|||||||...|+..+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 4789999999999999999987654
No 445
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=89.12 E-value=0.18 Score=57.19 Aligned_cols=27 Identities=37% Similarity=0.444 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 435 PPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 435 ~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
..-+++|+|++|+|||||+..|++.+.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345899999999999999999988764
No 446
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=89.07 E-value=0.16 Score=56.61 Aligned_cols=28 Identities=18% Similarity=0.371 Sum_probs=24.1
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 434 PPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 434 ~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
..+..+.|.||+|+|||||++.++..+.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 3566889999999999999999998764
No 447
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=88.93 E-value=0.24 Score=51.13 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=20.3
Q ss_pred CCcEEEEEcCCCCCHHHHH-HHHHcc
Q psy5893 435 PPIVVAVVGPPQVGKSTLI-RCLIKN 459 (1182)
Q Consensus 435 ~GeivaIvGpsGsGKSTLL-rlL~Gl 459 (1182)
+|.++.|.||.||||||+| +++..+
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4789999999999999997 554443
No 448
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=88.89 E-value=0.18 Score=56.15 Aligned_cols=27 Identities=19% Similarity=0.143 Sum_probs=24.5
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHcc
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKN 459 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl 459 (1182)
+++|+++.|.||+|+|||||+..|+.-
T Consensus 95 l~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 95 LESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999999888753
No 449
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=88.85 E-value=0.17 Score=59.26 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 436 PIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 436 GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
+..+.|.||+|+|||||+++|++.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~ 155 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 45688999999999999999998763
No 450
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.75 E-value=0.21 Score=55.36 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=21.3
Q ss_pred EEEEcCCCCCHHHHHHHHHccCC
Q psy5893 439 VAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 439 vaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
+.|.||+|+|||||+++|++.+.
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 88999999999999999998764
No 451
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=88.71 E-value=0.24 Score=48.68 Aligned_cols=26 Identities=31% Similarity=0.279 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 436 PIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 436 GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
+.-+.|.||+|+|||++.++|.....
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 44578999999999999999987654
No 452
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=88.71 E-value=0.15 Score=52.92 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHH-HHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRC-LIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrl-L~Gl~ 460 (1182)
-++|+|++|+|||||++. +.|.+
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~~ 40 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGEF 40 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 488999999999999998 55543
No 453
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=88.63 E-value=0.12 Score=55.52 Aligned_cols=23 Identities=35% Similarity=0.621 Sum_probs=20.3
Q ss_pred EEEEcCCCCCHHHHHHHHHccCC
Q psy5893 439 VAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 439 vaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
+.|.||+|+|||||+++|+....
T Consensus 47 vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHhC
Confidence 66899999999999999998653
No 454
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=88.61 E-value=0.25 Score=55.31 Aligned_cols=28 Identities=29% Similarity=0.456 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
..++.-+.|.||+|+|||||+++|+...
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 3456778899999999999999999876
No 455
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=88.19 E-value=0.087 Score=53.87 Aligned_cols=23 Identities=39% Similarity=0.512 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcc
Q psy5893 437 IVVAVVGPPQVGKSTLIRCLIKN 459 (1182)
Q Consensus 437 eivaIvGpsGsGKSTLLrlL~Gl 459 (1182)
--++|+|++|+|||||++.|.+-
T Consensus 31 ~ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 35789999999999999888653
No 456
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=88.43 E-value=0.24 Score=52.19 Aligned_cols=26 Identities=23% Similarity=0.439 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 436 PIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 436 GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
|.+++|=|+.||||||++++|...+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999998764
No 457
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=88.40 E-value=0.19 Score=61.28 Aligned_cols=27 Identities=41% Similarity=0.497 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 434 PPPIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 434 ~~GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
.+.-+|+|+|++|+||||||+.|.|..
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 344678999999999999999999864
No 458
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=88.35 E-value=0.16 Score=65.09 Aligned_cols=32 Identities=28% Similarity=0.458 Sum_probs=28.5
Q ss_pred ccccccccCCCCCCCCCcEEEEEcCCCCCHHHHH
Q psy5893 420 KKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLI 453 (1182)
Q Consensus 420 ~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLL 453 (1182)
..|.+..||+. |+.+.+++|.|+||||||||.
T Consensus 30 r~hNLkni~v~--iP~~~lvv~tG~SGSGKSSLa 61 (972)
T 2r6f_A 30 RAHNLKNIDVE--IPRGKLVVLTGLSGSGKSSLA 61 (972)
T ss_dssp CSSSCCSEEEE--EETTSEEEEEESTTSSHHHHH
T ss_pred ccccCCceeee--ccCCcEEEEECCCCCCHHHHH
Confidence 45678888888 999999999999999999984
No 459
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=88.28 E-value=0.16 Score=65.27 Aligned_cols=32 Identities=28% Similarity=0.470 Sum_probs=28.5
Q ss_pred ccccccccCCCCCCCCCcEEEEEcCCCCCHHHHH
Q psy5893 420 KKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLI 453 (1182)
Q Consensus 420 ~k~~i~~vd~~~~i~~GeivaIvGpsGsGKSTLL 453 (1182)
..|.+..||+. |+.+.+++|.|+||||||||.
T Consensus 32 r~hNLkni~v~--iP~~~lvv~tG~SGSGKSSLa 63 (993)
T 2ygr_A 32 REHNLRSVDLD--LPRDALIVFTGLSGSGKSSLA 63 (993)
T ss_dssp CSSSCCSEEEE--EESSSEEEEEESTTSSHHHHH
T ss_pred cccccCceeee--ccCCCEEEEECCCCCcHHHHH
Confidence 45678888888 999999999999999999984
No 460
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=88.27 E-value=0.26 Score=55.17 Aligned_cols=28 Identities=18% Similarity=0.317 Sum_probs=24.8
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 434 PPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 434 ~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
.+|..+.|.||+|+|||||++.|+..+.
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3567899999999999999999998765
No 461
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=88.15 E-value=0.22 Score=57.82 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
.++|||.+++|||||++.|+|--
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 37999999999999999999864
No 462
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=88.11 E-value=0.2 Score=58.41 Aligned_cols=45 Identities=18% Similarity=0.344 Sum_probs=30.2
Q ss_pred CceeeeeccccccCCch-hhhHHHHHhhhhhhhhhcCCeeEEEecccc
Q psy5893 991 PKVMGVLTHLDMLKNNK-TLKTTKKMLKHRFWTEVYAGAKLFYLSGIV 1037 (1182)
Q Consensus 991 p~v~~vlthld~~~~~~-~l~~~kk~lk~rf~~e~~~g~k~fylsg~~ 1037 (1182)
..++-|+|..|+..... .....++.+..+|-. ..++.+|+.|...
T Consensus 287 ~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~SA~t 332 (436)
T 2hjg_A 287 KAVVIVVNKWDAVDKDESTMKEFEENIRDHFQF--LDYAPILFMSALT 332 (436)
T ss_dssp CEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGG--GTTSCEEECCTTT
T ss_pred CcEEEEEECccCCCcchHHHHHHHHHHHHhccc--CCCCCEEEEeccc
Confidence 45888999999986433 345556666555532 2478899988764
No 463
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=88.04 E-value=0.11 Score=65.53 Aligned_cols=29 Identities=28% Similarity=0.484 Sum_probs=26.8
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
+.+|..+.|+||||+|||||+++|++.+.
T Consensus 508 ~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 508 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp CCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred CCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 67889999999999999999999999875
No 464
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=88.04 E-value=0.23 Score=56.12 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 435 PPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 435 ~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
++..+.|.||+|+||||+.++|+..+.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 456788999999999999999998763
No 465
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=88.02 E-value=0.18 Score=57.21 Aligned_cols=23 Identities=30% Similarity=0.470 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
.++|||.+|+||||||+.|+|.-
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 466
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=87.99 E-value=0.21 Score=58.93 Aligned_cols=27 Identities=30% Similarity=0.502 Sum_probs=24.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 435 PPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 435 ~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
++.+++|+|++|+||||++..|+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999998775
No 467
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=87.99 E-value=0.25 Score=53.52 Aligned_cols=26 Identities=35% Similarity=0.563 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 436 PIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 436 GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
+..+.|.||+|+|||||+++|+..+.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 34577999999999999999998764
No 468
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=87.98 E-value=0.25 Score=55.83 Aligned_cols=24 Identities=33% Similarity=0.343 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHc
Q psy5893 435 PPIVVAVVGPPQVGKSTLIRCLIK 458 (1182)
Q Consensus 435 ~GeivaIvGpsGsGKSTLLrlL~G 458 (1182)
.|.-++|+|+||+|||||...|.+
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 688899999999999999998887
No 469
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=87.93 E-value=0.062 Score=54.84 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcc
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKN 459 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl 459 (1182)
-++|+|++|+|||||++.|.+-
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~ 56 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADD 56 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999887764
No 470
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=87.86 E-value=0.16 Score=59.58 Aligned_cols=27 Identities=26% Similarity=0.279 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 435 PPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 435 ~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
++.+++|+|++|+||||++..|++.+.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999998765
No 471
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=87.80 E-value=0.25 Score=53.28 Aligned_cols=26 Identities=31% Similarity=0.571 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 435 PPIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 435 ~GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
+...+.|.||+|+|||||+++|+...
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 44568899999999999999998764
No 472
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=87.59 E-value=0.26 Score=54.74 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 436 PIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 436 GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
+--++|+|++|+|||||++.|.+-.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3468999999999999999987753
No 473
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=87.51 E-value=0.3 Score=50.93 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=21.1
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHc
Q psy5893 434 PPPIVVAVVGPPQVGKSTLIRCLIK 458 (1182)
Q Consensus 434 ~~GeivaIvGpsGsGKSTLLrlL~G 458 (1182)
-.|.-+.|.|+||+|||||...|..
T Consensus 14 v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 14 IDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3477889999999999999887764
No 474
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=87.46 E-value=0.32 Score=54.18 Aligned_cols=28 Identities=29% Similarity=0.502 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 434 PPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 434 ~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
.++.-+.|.||+|+|||+|+++|+....
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEAN 76 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHHC
Confidence 4566789999999999999999987643
No 475
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=87.46 E-value=0.31 Score=54.33 Aligned_cols=26 Identities=19% Similarity=0.310 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 436 PIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 436 GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
+..+.|.||+|+|||+|+.+|+....
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999987543
No 476
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=87.42 E-value=0.32 Score=54.54 Aligned_cols=27 Identities=11% Similarity=0.214 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 435 PPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 435 ~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
.+..+.|.||+|+|||||++.++..+.
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~~ 70 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEIE 70 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 355899999999999999999987653
No 477
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=87.33 E-value=0.28 Score=53.01 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
.+||+||+||||||+.+.|+..+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999997654
No 478
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=87.09 E-value=0.28 Score=59.31 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 436 PIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 436 GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
--+|+|+|.+|+||||||+.|.|--.
T Consensus 65 ~~~V~vvG~~n~GKSTLIN~Llg~~~ 90 (550)
T 2qpt_A 65 KPMVLVAGQYSTGKTSFIQYLLEQEV 90 (550)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCcc
Confidence 34899999999999999999998643
No 479
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=87.03 E-value=0.34 Score=54.97 Aligned_cols=27 Identities=30% Similarity=0.683 Sum_probs=23.2
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 434 PPPIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 434 ~~GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
.++..+.|.||+|+|||||+++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 345678999999999999999998765
No 480
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=86.98 E-value=0.35 Score=56.61 Aligned_cols=29 Identities=17% Similarity=0.305 Sum_probs=26.0
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
+++|+++.|.|++|+|||||+..|+....
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999988887654
No 481
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=86.97 E-value=0.36 Score=55.00 Aligned_cols=29 Identities=17% Similarity=0.246 Sum_probs=25.9
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
+.+|+++.|.|++|+|||||+..|+....
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a 71 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSAL 71 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999988876654
No 482
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=86.82 E-value=0.29 Score=56.07 Aligned_cols=24 Identities=46% Similarity=0.476 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcc
Q psy5893 436 PIVVAVVGPPQVGKSTLIRCLIKN 459 (1182)
Q Consensus 436 GeivaIvGpsGsGKSTLLrlL~Gl 459 (1182)
+..++|+|.+|+|||||++.|.|.
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhh
Confidence 456899999999999999999987
No 483
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=86.71 E-value=0.31 Score=57.73 Aligned_cols=23 Identities=43% Similarity=0.751 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcc
Q psy5893 437 IVVAVVGPPQVGKSTLIRCLIKN 459 (1182)
Q Consensus 437 eivaIvGpsGsGKSTLLrlL~Gl 459 (1182)
-.++|+|++|+||||||+.|+|-
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 34899999999999999999985
No 484
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=86.69 E-value=0.31 Score=55.31 Aligned_cols=27 Identities=22% Similarity=0.464 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 435 PPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 435 ~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
++..+.|.||+|+|||||+++|+..+.
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 345678999999999999999998763
No 485
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=86.44 E-value=0.3 Score=55.95 Aligned_cols=25 Identities=52% Similarity=0.608 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 436 PIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 436 GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
+..++|+|.+|+|||||++.|.|-.
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhh
Confidence 4568999999999999999999864
No 486
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=86.34 E-value=0.38 Score=52.75 Aligned_cols=24 Identities=29% Similarity=0.535 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHcc
Q psy5893 436 PIVVAVVGPPQVGKSTLIRCLIKN 459 (1182)
Q Consensus 436 GeivaIvGpsGsGKSTLLrlL~Gl 459 (1182)
|.++.|.||.|+|||||++.+...
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHH
Confidence 468999999999999999988753
No 487
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=86.03 E-value=0.35 Score=55.31 Aligned_cols=28 Identities=32% Similarity=0.420 Sum_probs=24.7
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
+++|.++.|.||+|+|||||...|+...
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999999988777644
No 488
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.94 E-value=0.43 Score=55.99 Aligned_cols=29 Identities=31% Similarity=0.591 Sum_probs=24.5
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
+++..-+.|.||+|+|||+|.++|++...
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 44556688999999999999999998654
No 489
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=85.79 E-value=0.38 Score=53.36 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
.+.|.||+|+|||||++.|+....
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECcCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987653
No 490
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.78 E-value=0.45 Score=56.05 Aligned_cols=29 Identities=31% Similarity=0.548 Sum_probs=24.8
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
+++..-+.|.||+|||||+|.++|++...
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 45667788999999999999999998754
No 491
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.66 E-value=0.46 Score=55.92 Aligned_cols=29 Identities=28% Similarity=0.390 Sum_probs=24.8
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
+++..-+-|.||+|||||+|.++|++...
T Consensus 212 ~~~prGvLLyGPPGTGKTllAkAiA~e~~ 240 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLARACAAQTN 240 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCeeEEECcCCCCHHHHHHHHHHHhC
Confidence 45666788999999999999999998654
No 492
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=85.58 E-value=0.4 Score=54.38 Aligned_cols=28 Identities=29% Similarity=0.502 Sum_probs=23.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHccCC
Q psy5893 434 PPPIVVAVVGPPQVGKSTLIRCLIKNFT 461 (1182)
Q Consensus 434 ~~GeivaIvGpsGsGKSTLLrlL~Gl~~ 461 (1182)
.++.-+.|.||+|+|||||+++|+..+.
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~~ 109 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEAN 109 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 3445578899999999999999998653
No 493
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=85.43 E-value=0.39 Score=56.67 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 435 PPIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 435 ~GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
+=.+|+|+|+..+||||||+.|.|..
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~~ 91 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYM 91 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhhc
Confidence 34589999999999999999999863
No 494
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=85.19 E-value=0.42 Score=59.34 Aligned_cols=26 Identities=31% Similarity=0.376 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 435 PPIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 435 ~GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
.+-.|+|+|++|+||||||++|+|.-
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~ 93 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGEN 93 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34569999999999999999999864
No 495
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=85.19 E-value=0.4 Score=55.91 Aligned_cols=24 Identities=33% Similarity=0.671 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 437 IVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 437 eivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
-.++|||.+|+|||||++.|+|-.
T Consensus 176 ~ki~lvG~~nvGKSSLin~l~~~~ 199 (436)
T 2hjg_A 176 IQFCLIGRPNVGKSSLVNAMLGEE 199 (436)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTST
T ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999864
No 496
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=85.18 E-value=0.48 Score=50.81 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=21.1
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHccC
Q psy5893 434 PPPIVVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 434 ~~GeivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
.+|.++.|.||.|+||||+|..++..+
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence 568999999999999999765554433
No 497
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=85.14 E-value=0.3 Score=55.51 Aligned_cols=23 Identities=43% Similarity=0.548 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHccC
Q psy5893 438 VVAVVGPPQVGKSTLIRCLIKNF 460 (1182)
Q Consensus 438 ivaIvGpsGsGKSTLLrlL~Gl~ 460 (1182)
-|+|||.++|||||||+.|++--
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~ 182 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAK 182 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEEC
T ss_pred eeeeeCCCCCCHHHHHHHHHcCC
Confidence 37899999999999999998764
No 498
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=84.99 E-value=0.44 Score=55.64 Aligned_cols=44 Identities=14% Similarity=0.246 Sum_probs=29.2
Q ss_pred ceeeeeccccccCCc-hhhhHHHHHhhhhhhhhhcCCeeEEEecccc
Q psy5893 992 KVMGVLTHLDMLKNN-KTLKTTKKMLKHRFWTEVYAGAKLFYLSGIV 1037 (1182)
Q Consensus 992 ~v~~vlthld~~~~~-~~l~~~kk~lk~rf~~e~~~g~k~fylsg~~ 1037 (1182)
.++.|+|..|+.... ..+...++.+..+|.. ..++.+|+.|...
T Consensus 294 ~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~SA~~ 338 (439)
T 1mky_A 294 ASVVVFNKWDLVVHREKRYDEFTKLFREKLYF--IDYSPLIFTSADK 338 (439)
T ss_dssp EEEEEEECGGGSTTGGGCHHHHHHHHHHHCGG--GTTSCEEECBTTT
T ss_pred CEEEEEECccCCCchhhHHHHHHHHHHHHhcc--CCCCcEEEEECCC
Confidence 477899999998643 3355555566666543 3467888888664
No 499
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=84.95 E-value=0.45 Score=58.46 Aligned_cols=23 Identities=26% Similarity=0.229 Sum_probs=0.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHH
Q psy5893 435 PPIVVAVVGPPQVGKSTLIRCLI 457 (1182)
Q Consensus 435 ~GeivaIvGpsGsGKSTLLrlL~ 457 (1182)
.|-++.|+|.+||||||+.+.|.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La 73 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALE 73 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHH
No 500
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=84.83 E-value=0.36 Score=54.83 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=0.0
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHHH
Q psy5893 433 EPPPIVVAVVGPPQVGKSTLIRCLI 457 (1182)
Q Consensus 433 i~~GeivaIvGpsGsGKSTLLrlL~ 457 (1182)
+++|.++.|.||+|+|||||...++
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA 144 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALG 144 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHH
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHH
Done!