RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5893
(1182 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 61.8 bits (149), Expect = 1e-09
Identities = 80/586 (13%), Positives = 166/586 (28%), Gaps = 198/586 (33%)
Query: 539 GSGDDKPKTRA---ELMEKKRKLKEQFDAEYDDKDGGGNTYYDDLKTQ---ATRQAELNR 592
S D T L+ K+ ++ ++F E + Y L + RQ +
Sbjct: 56 MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN------YKFLMSPIKTEQRQPSMMT 109
Query: 593 QQFHDLDDNARVELEGF------RAGLYIRVELDGMPCELIENFDPTYPLIVGGLQPGEE 646
+ + + D + + F R Y+++ + + P +++ G+
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR------QALLELRPAKNVLIDGV----- 158
Query: 647 TIGC---------VRARVKKHRWYGKI--LKSGN----PVIMSVGWRRFQTL-PIYSKQE 690
+G + + + KI L N ++ + + + P ++ +
Sbjct: 159 -LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 691 DNM------------RYRMLKYTPQHVAC---MAHFWGP--------------ITR--SG 719
D+ R L + + C + + TR
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277
Query: 720 TGFLAVQ-----DVAKREPGFRVIATGTILDANQTAEVTKKLK---LTGVPMKIYKKTAF 771
T FL+ + ++L + L LT P ++
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLL-LKYLDCRPQDLPREVLTTNPRRLSIIAES 336
Query: 772 IKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALN--KP---QGAFR--ATFEDKIMLSDI 824
I+D + K+ T+ I+ +LN +P + F + F + I
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTI------IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390
Query: 825 VFCRTWYKVD-------IPKLYNPVTSLLLPPEQKDSWTG--------MKTTGQLKRERG 869
+ W+ V + KL+ SL+ +K ++ +L+ E
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHK--YSLV----EKQPKESTISIPSIYLELKVKLENEYA 444
Query: 870 LHNDPQFDSMYTPIVRKPKTMTKLKIPKALQKE--------------LPYHMKP------ 909
LH + IPK + + +H+K
Sbjct: 445 LHR---------------SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489
Query: 910 ----------------KYKSKETPKPQRVAVI----------------HSEREQKVASLM 937
K + T +++ + E+ V +++
Sbjct: 490 MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL 549
Query: 938 KMLRTNYSEK--NSKEKQAMKARMVALKLRAKA---AEEAKQQRQR 978
L E SK ++ + L A+ EEA +Q QR
Sbjct: 550 DFLP-KIEENLICSKY-----TDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 59.1 bits (142), Expect = 8e-09
Identities = 91/631 (14%), Positives = 170/631 (26%), Gaps = 226/631 (35%)
Query: 263 QPRMSDKDLAIRHKITSALAGLNSKEEEEEEQEDSAFSDESADD--NSSDEDETVEPKTH 320
+ + KD+ + + + + K+ ++ + S S E D S D T
Sbjct: 13 EHQYQYKDI-LSVFEDAFVDNFDCKDVQDMPK--SILSKEEIDHIIMSKDAVS----GTL 65
Query: 321 KDSKNPEEDTGLNWKSDLAQKAASAFLERQANIVNLAKYVYGDMEDVSVTMEGDEAPNKK 380
+ L W L +Q +V K+V E N K
Sbjct: 66 R----------LFWT----------LLSKQEEMV--QKFV-----------EEVLRINYK 92
Query: 381 -VHRKRQAELTAKQKNPKAFTFQSVIKGERKFRRKEDIQA-KKHHVPQVD-----RTPL- 432
+ + E + + Q +R + D Q K++V ++ R L
Sbjct: 93 FLMSPIKTEQRQPSMMTRMYIEQR----DRLYN---DNQVFAKYNVSRLQPYLKLRQALL 145
Query: 433 --EPPPIVVAVVGPPQVGKSTLI-----------------------RC------------ 455
P V+ + G GK+ + C
Sbjct: 146 ELRPAKNVL-IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204
Query: 456 ----LIKNFTKTPLSVIKGPVTL-IIKDSIRDCFVTGKWKASEDASELLRLDDMDDDEEL 510
+ N+T + + I+ +R + ++ LL L ++ + +
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC-----LLVLLNV-QNAKA 258
Query: 511 FGDFEDLE------TGEKHSGDKSGGGSGGVSGGGSGDDKPK--TRAELME--------K 554
+ F +L T K D + S D T E+ +
Sbjct: 259 WNAF-NLSCKILLTTRFKQVTDFLSAATTTHI---SLDHHSMTLTPDEVKSLLLKYLDCR 314
Query: 555 KRKLKEQ-----------FDAEYDDKDGGGNT-----YYDDLKTQATRQAELN------- 591
+ L + D G T + + K ++ LN
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRD---GLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371
Query: 592 RQQFHDL---DDNARVELEGFRAGLYIRV--ELDGMPCELIENFDPTYPLIVGGLQPGEE 646
R+ F L +A + L + ++ ++ N Y L+ QP E
Sbjct: 372 RKMFDRLSVFPPSAHIP-----TILLSLIWFDVIKSDVMVVVNKLHKYSLVEK--QPKES 424
Query: 647 TIGC----------VRARVKKHRWYGKILKSGNPVIMSVGWRRFQTLPIYSKQEDNMRYR 696
TI + HR I+ N + F + + D Y
Sbjct: 425 TISIPSIYLELKVKLENEYALHR---SIVDHYNIP------KTFDSDDLIPPYLDQYFYS 475
Query: 697 MLKYTPQHVACMAHFWGPITRSGTGFLAVQDVAKREPGFRVIATGTILDANQTAEVTKKL 756
+ + H L + +R FR++ LD + +K+
Sbjct: 476 HIGH---H------------------LKNIEHPERMTLFRMV----FLDFRF---LEQKI 507
Query: 757 KLTGVP-------------MKIYKKTAFIKD 774
+ +K YK +I D
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKP--YICD 536
Score = 45.6 bits (107), Expect = 1e-04
Identities = 97/663 (14%), Positives = 177/663 (26%), Gaps = 214/663 (32%)
Query: 141 DTESGQGSMKKYKEQVVSSQDGRKRRKVMFDDDLEDNMDDDDDDDDDDETDDDNDEDNEE 200
D E+G+ +Y+ + D L D D+ D + +D +
Sbjct: 8 DFETGE---HQYQ----------------YKDILSVFEDAFVDNFDCKDV-----QDMPK 43
Query: 201 E--SEEEEEN--EEDDDEERKAEKKNSKNEHVQELTAKQKNP-KAFTFQSVIKGERKFRS 255
S+EE ++ D L +KQ+ + F + V++ KF
Sbjct: 44 SILSKEEIDHIIMSKDAVSG-------TLRLFWTLLSKQEEMVQKF-VEEVLRINYKFLM 95
Query: 256 TKPTVVPQPRMSDKDLAIRHKITSALAGLNSKEEEEEEQEDSAFSDES--ADDNSSDEDE 313
+ + + S EQ D ++D A N S
Sbjct: 96 SP-------------IKTEQRQPSM------MTRMYIEQRDRLYNDNQVFAKYNVSRLQP 136
Query: 314 TVEPKTHKDSKNPEEDTGLN-----WKSDLAQKAASAFLERQA---NI--VNLAKYVYGD 363
++ + P ++ ++ K+ +A ++ + I +NL +
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196
Query: 364 --ME---------DVSVTMEGDEAPNKKVH----RKRQAELTAKQKNP------------ 396
+E D + T D + N K+ + L +
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA 256
Query: 397 ---KAFTFQS---VIKGERKFRRKEDIQA----KKHHVPQVD-RTPLEPPPIVVAVVGPP 445
AF + R K+ H+ L P
Sbjct: 257 KAWNAFNLSCKILLTT-----RFKQVTDFLSAATTTHISLDHHSMTLTPDE--------- 302
Query: 446 QVGKSTLIRCLIKNFTKTPLSVIKG-PVTL-IIKDSIRDCFVTGK-WK--ASEDASELLR 500
KS L++ L P V+ P L II +SIRD T WK + + ++
Sbjct: 303 --VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360
Query: 501 --LDDMDDDE--ELFGDF----ED-------LET--GEKHSGDKSGGGSGGVSGGGSGDD 543
L+ ++ E ++F L + D
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD----------------- 403
Query: 544 KPKTRAELMEKKRKLKEQFDAEYDDKDGGGNTY-----YDDLKTQATRQAELNRQ----- 593
+ K + +K +T Y +LK + + L+R
Sbjct: 404 -VMVVVNKLHKYSLV---------EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY 453
Query: 594 ---QFHDLDDNARVELEGFRAGLYIRVELDGMPCELIENFDPTYPLIVGGLQPGEETIGC 650
+ D DD L+ + +I L E E + ++
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFY-SHIGHHLKN--IEHPERMT-LFRMVFLDF--------- 500
Query: 651 VRARVKKHRWYG-KILKSGNPVIMSVGWRR-FQTLPIYSKQ---EDNMRYRML----KYT 701
R+ KI S Q L Y D R++ +
Sbjct: 501 --------RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFL 552
Query: 702 PQH 704
P+
Sbjct: 553 PKI 555
Score = 34.4 bits (78), Expect = 0.27
Identities = 44/315 (13%), Positives = 88/315 (27%), Gaps = 96/315 (30%)
Query: 800 IKKALNKPQGAFRATFEDKIMLSDIVFCRTWYKVDIPKLYNPVTSLLLPPEQKDSWTGMK 859
K + P+ D I++S T LL E+
Sbjct: 35 CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT---------LLSKQEE-------- 77
Query: 860 TTGQLKR--ERGLHNDPQFDSMYTPIVRKPKTMTKLKIPKALQKELPYHMKPKYKSKETP 917
+++ E L + + +PI + + Q + M + + +
Sbjct: 78 ---MVQKFVEEVL--RINYKFLMSPIKTEQR-----------QPSMMTRMYIEQRDRLYN 121
Query: 918 KPQRVAVIHSEREQKVASLMKMLRTNYSEKNSKEKQAMKARMVAL-------K--LRAKA 968
Q A + R Q L + L + A+ V + K +
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQAL-----------LELRPAKNVLIDGVLGSGKTWVALDV 170
Query: 969 AEEAKQQRQRVMKKDIF----RTLRMPKVMGVLTHLDMLKNNKTLKTTKKMLKHRFWTEV 1024
K Q + M IF + P+ + L+ML+ L ++
Sbjct: 171 CLSYKVQCK--MDFKIFWLNLKNCNSPETV-----LEMLQK----------LLYQI-DPN 212
Query: 1025 YAGAKLFYLSGIVHGEYMKNEVKNLGRFIAVMKFRPLIWQTTHSYMLVTYTVMLKLLRLV 1084
+ + + ++ E++ L +K +P Y L +L V
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRL------LKSKP-------------YENCLLVLLNV 253
Query: 1085 GTTGNMNCFSFQARV 1099
N F+ ++
Sbjct: 254 QNAKAWNAFNLSCKI 268
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.0 bits (137), Expect = 4e-08
Identities = 82/507 (16%), Positives = 155/507 (30%), Gaps = 201/507 (39%)
Query: 464 PLSVIKGPV--TLIIKDSI-------RDCFV-------TGKWKASEDAS--ELL-R---- 500
PL++ G + L++ + ++ F G E + EL+ +
Sbjct: 8 PLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGY 67
Query: 501 LDDMDDDEE----------LFGDFED--LETGEKHSGDKSGGGSGGVSGGGSGDDKPKTR 548
+ + + + +FE+ LE + H+ ++ ++
Sbjct: 68 VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHA----------LAAKLLQEN----D 113
Query: 549 AELMEKKRKLKEQFDAEY------------------DDKD-------GG-GNT--YYDDL 580
L++ K +K A + + GG GNT Y+++L
Sbjct: 114 TTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL 173
Query: 581 ----KTQATRQAELNRQQFHDLDDNARVELEG---FRAGLYIRVELDG---MPCELIENF 630
+T +L + L + R L+ F GL I L+ P
Sbjct: 174 RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP------- 226
Query: 631 DPTY--------PLI-------------VGGLQPGEE------TIGCVRARV------KK 657
D Y PLI + G PGE G + V +
Sbjct: 227 DKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAET 286
Query: 658 HRW--YGKILKSGNPVIMSVGWRRFQTLPIYSKQEDNMRYRMLKYTPQHV----ACMAHF 711
W + ++ V+ +G R ++ P S + +L+ + ++ + M
Sbjct: 287 DSWESFFVSVRKAITVLFFIGVRCYEAYPNTS-----LPPSILEDSLENNEGVPSPM--- 338
Query: 712 WGPITRSGTGFLAVQDVAKREPGFRVIATGTILDANQTAEVT-----KKLKLTGVPMKIY 766
L++ ++ + + V T + L A + E++ K L ++G P +Y
Sbjct: 339 -----------LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLY 387
Query: 767 KKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGAFRATFEDKIMLSDIVF 826
N TL K + SG+ Q R F ++
Sbjct: 388 G--------LNLTLR-------KAKAPSGLD----------QS--RIPFSER-------- 412
Query: 827 CRTWYKVDIPKLYNPVT----SLLLPP 849
K+ + PV S LL P
Sbjct: 413 -----KLKFSNRFLPVASPFHSHLLVP 434
Score = 45.8 bits (108), Expect = 1e-04
Identities = 33/166 (19%), Positives = 50/166 (30%), Gaps = 53/166 (31%)
Query: 616 RVELDGMPCELIENFDPTY-----PLIVGGLQPGEETIGCVRARVKKH--RWYGKILKSG 668
R+ + F P L L P + I + K+ + K ++
Sbjct: 406 RIPFSERKLKFSNRFLPVASPFHSHL----LVPASDLI---NKDLVKNNVSFNAKDIQ-- 456
Query: 669 NPVIMSVGWRRFQTLPIYSKQEDNMRYRMLKY--TPQHVACMAH---FW----------- 712
+P+Y D R+L + + V C+ W
Sbjct: 457 --------------IPVYD-TFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHI 501
Query: 713 ---GPITRSGTGFLAVQDVAKREPGFRVIATGTILDANQTAEVTKK 755
GP SG G L ++ G RVI GT LD N + K
Sbjct: 502 LDFGPGGASGLGVLTHRNKDGT--GVRVIVAGT-LDINPDDDYGFK 544
Score = 39.3 bits (91), Expect = 0.010
Identities = 36/185 (19%), Positives = 60/185 (32%), Gaps = 58/185 (31%)
Query: 404 VIKGERKFRRKEDIQAKKHHVPQVDRTPLE----PPPIVVAVVGPPQ--VGKSTLIRCLI 457
I + + ++ + H+P + + +VV+ GPPQ G + +R
Sbjct: 340 SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVS--GPPQSLYGLNLTLR-KA 396
Query: 458 K-----NFTKTPLSVIK-------GPVT-------------LIIKDSIRDCFVTGKWKAS 492
K + ++ P S K PV LI KD +++ + A
Sbjct: 397 KAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNV---SFNAK 453
Query: 493 ---------EDASELLRLDDMDDDEELFG-------DFED-LETGEKHSGDKSGGGSGGV 535
D S+L R+ E + +E + H D G GG
Sbjct: 454 DIQIPVYDTFDGSDL-RVLSGSISERIVDCIIRLPVKWETTTQFKATHILDF---GPGGA 509
Query: 536 SGGGS 540
SG G
Sbjct: 510 SGLGV 514
Score = 39.3 bits (91), Expect = 0.011
Identities = 50/306 (16%), Positives = 95/306 (31%), Gaps = 87/306 (28%)
Query: 509 ELFGDFE---DL-ETGEKHSGDKSGGGSGGVSGGGSGDDKPKTRAELM--EKKRKLKEQF 562
+L+ + D+ + H D G + + P EK ++++E +
Sbjct: 1634 DLYKTSKAAQDVWNRADNHFKDTYGFSILDIV-----INNPVNLTIHFGGEKGKRIRENY 1688
Query: 563 DA-EYDD-KDGGGNTY--YDDLKTQATR------QAELNR----Q---------QFHDLD 599
A ++ DG T + ++ +T + L+ Q F DL
Sbjct: 1689 SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLK 1748
Query: 600 DNARVELEGFRAG--LYIRVELDGMPCELIENFDPTYP-LI-VGGLQPGEETIGCVRARV 655
+ + AG L G E Y L + + E + V R
Sbjct: 1749 SKGLIPADATFAGHSL-------G------E-----YAALASLADVMSIESLVEVVFYR- 1789
Query: 656 KKHRWYGKILKSGNPVIMSVGWRRFQTLPIYSKQEDNM-RYRMLKYTPQHVA---CMAHF 711
G ++ P + E Y M+ P VA
Sbjct: 1790 ------GMTMQVAVP-----------------RDELGRSNYGMIAINPGRVAASFSQEAL 1826
Query: 712 WGPITRSG--TGFLAVQDVAKREPGFRVIATGTILDANQTAEVTKKLKLTGVPMKIYKKT 769
+ R G TG+L V+ V + +A G + + V +KL + + +K+
Sbjct: 1827 QYVVERVGKRTGWL-VEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKS 1885
Query: 770 AFIKDM 775
++++
Sbjct: 1886 LSLEEV 1891
Score = 38.5 bits (89), Expect = 0.016
Identities = 48/310 (15%), Positives = 95/310 (30%), Gaps = 108/310 (34%)
Query: 925 IHS-------EREQKVASLMKMLRTNYSEKNSKEKQAMKARMVALKLRAKAAEEAK---- 973
IH+ E + + ++++ + + ++ K AL RA A+
Sbjct: 101 IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL-FRAVGEGNAQLVAI 159
Query: 974 ---Q-QRQRVMK--KDIFRTLRMPKVMGVL-THLDMLKN-NKTLKTTKKMLKHRF----W 1021
Q + +D+++T V ++ + L +T +K+ W
Sbjct: 160 FGGQGNTDDYFEELRDLYQTYH-VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW 218
Query: 1022 -TEVYAGAKLFYLSGIVHGEYMKNEVKNLGRFIAVMKFRPLI--WQTTHSYMLVTYTVML 1078
YL I I+ PLI Q H Y V
Sbjct: 219 LENPSNTPDKDYLLSI---------------PISC----PLIGVIQLAH------YVVTA 253
Query: 1079 KLL---------RLVGTTGNMNCF-------------SFQARVKKHRWYGKILKSGNPVI 1116
KLL L G TG+ SF V+K + V+
Sbjct: 254 KLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRK------AIT----VL 303
Query: 1117 MSVGWRRFQTLPIYSKQEDNMRYRMLKYTPQHV----ACMAHFWGPITRSGTGFLAVQDV 1172
+G R ++ P S + +L+ + ++ + M L++ ++
Sbjct: 304 FFIGVRCYEAYPNTS-----LPPSILEDSLENNEGVPSPM--------------LSISNL 344
Query: 1173 AKREVRTWLT 1182
+ +V+ ++
Sbjct: 345 TQEQVQDYVN 354
Score = 34.3 bits (78), Expect = 0.34
Identities = 27/175 (15%), Positives = 43/175 (24%), Gaps = 61/175 (34%)
Query: 761 VPMKIYKKTAFIKDMFNSTLE------------------VAKFEGAKIRTVS-GIRGQIK 801
VP + + +++ FN L V KF G V GQ
Sbjct: 22 VPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFD 81
Query: 802 KALNKPQGAFRATF----------------EDKIMLSDIVFCRTWYK----VDIPKLYNP 841
+ LN F + D ++ + + P
Sbjct: 82 QVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRP-FDKK 140
Query: 842 VTSLLLPPEQKDSWT-----GMKTTGQLKRERGLHNDPQFD------SMYTPIVR 885
S L + + G GQ G +D F+ Y +V
Sbjct: 141 SNSALFRAVGEGNAQLVAIFG----GQ-----GNTDDY-FEELRDLYQTYHVLVG 185
>1twf_F ABC23, DNA-directed RNA polymerases I, II, and III 23 KD
polypeptide; transcription, mRNA, multiprotein complex;
HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP:
a.143.1.2 PDB: 1i3q_F 1i6h_F 1k83_F* 1nik_F 1nt9_F
1pqv_F 1r5u_F 1r9s_F* 1r9t_F* 1sfo_F* 1twa_F* 1twc_F*
1i50_F* 1twg_F* 1twh_F* 1wcm_F 1y1v_F 1y1w_F 1y1y_F
1y77_F* ...
Length = 155
Score = 48.1 bits (114), Expect = 2e-06
Identities = 12/65 (18%), Positives = 30/65 (46%)
Query: 173 DLEDNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSKNEHVQELT 232
D E+ +D +++ +D + + +DE+ EE + ++ E D + + E Q+
Sbjct: 3 DYEEAFNDGNENFEDFDVEHFSDEETYEEKPQFKDGETTDANGKTIVTGGNGPEDFQQHE 62
Query: 233 AKQKN 237
++
Sbjct: 63 QIRRK 67
Score = 42.4 bits (99), Expect = 2e-04
Identities = 16/82 (19%), Positives = 34/82 (41%), Gaps = 3/82 (3%)
Query: 179 DDDDDDDDDDETDDDNDEDN--EEESEEEEENEEDDDEERKAEKKNSKNEHVQELTAKQK 236
D ++ +D +E +D D ++ +EE+ EE+ +D + K + E + +
Sbjct: 3 DYEEAFNDGNENFEDFDVEHFSDEETYEEKPQFKDGETTDANGKTIVTGGNGPEDFQQHE 62
Query: 237 NPKAFTFQSVIKGERKFRSTKP 258
+ T + R+T P
Sbjct: 63 QIRRKT-LKEKAIPKDQRATTP 83
Score = 41.2 bits (96), Expect = 4e-04
Identities = 6/69 (8%), Positives = 27/69 (39%)
Query: 171 DDDLEDNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSKNEHVQE 230
++ ++ +++ +D D + D+ + + + ++ E + + + ++
Sbjct: 4 YEEAFNDGNENFEDFDVEHFSDEETYEEKPQFKDGETTDANGKTIVTGGNGPEDFQQHEQ 63
Query: 231 LTAKQKNPK 239
+ K K
Sbjct: 64 IRRKTLKEK 72
Score = 41.2 bits (96), Expect = 5e-04
Identities = 11/83 (13%), Positives = 28/83 (33%), Gaps = 2/83 (2%)
Query: 171 DDDLEDNMDDDDDDDDDDET--DDDNDEDNEEESEEEEENEEDDDEERKAEKKNSKNEHV 228
+D +N +D D + DE ++ + E ++ + + +++ +
Sbjct: 8 FNDGNENFEDFDVEHFSDEETYEEKPQFKDGETTDANGKTIVTGGNGPEDFQQHEQIRRK 67
Query: 229 QELTAKQKNPKAFTFQSVIKGER 251
+ T + K ER
Sbjct: 68 TLKEKAIPKDQRATTPYMTKYER 90
Score = 39.7 bits (92), Expect = 0.001
Identities = 9/70 (12%), Positives = 24/70 (34%)
Query: 170 FDDDLEDNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSKNEHVQ 229
+++ D ++ +D D + +D++ E+ + + E + +H Q
Sbjct: 4 YEEAFNDGNENFEDFDVEHFSDEETYEEKPQFKDGETTDANGKTIVTGGNGPEDFQQHEQ 63
Query: 230 ELTAKQKNPK 239
K
Sbjct: 64 IRRKTLKEKA 73
Score = 37.3 bits (86), Expect = 0.008
Identities = 5/73 (6%), Positives = 21/73 (28%)
Query: 170 FDDDLEDNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSKNEHVQ 229
+D + D++ ++ D + + +D ++ + + +
Sbjct: 14 NFEDFDVEHFSDEETYEEKPQFKDGETTDANGKTIVTGGNGPEDFQQHEQIRRKTLKEKA 73
Query: 230 ELTAKQKNPKAFT 242
++ T
Sbjct: 74 IPKDQRATTPYMT 86
Score = 36.2 bits (83), Expect = 0.021
Identities = 9/108 (8%), Positives = 25/108 (23%), Gaps = 23/108 (21%)
Query: 125 SDDSDDENDEDDTSDDDTESGQGSMKKYKEQVVSSQDGRKRRKVMFDDDLEDNMDDDDDD 184
SD + ND ++ +D D++ + D
Sbjct: 2 SDYEEAFNDGNENFEDFDVEH-----------------------FSDEETYEEKPQFKDG 38
Query: 185 DDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSKNEHVQELT 232
+ D + ++ + ++ + +T
Sbjct: 39 ETTDANGKTIVTGGNGPEDFQQHEQIRRKTLKEKAIPKDQRATTPYMT 86
Score = 35.4 bits (81), Expect = 0.036
Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 2/85 (2%)
Query: 184 DDDDDETD-DDNDEDNEEESEEEEENEEDDDEERKAEKKNSKNEHVQELTAKQKNPKAFT 242
D ++ D ++N ED + E +EE E+ + + E ++ + +
Sbjct: 3 DYEEAFNDGNENFEDFDVEHFSDEETYEEKPQFKDGETTDANGKTIVT-GGNGPEDFQQH 61
Query: 243 FQSVIKGERKFRSTKPTVVPQPRMS 267
Q K ++ K P M+
Sbjct: 62 EQIRRKTLKEKAIPKDQRATTPYMT 86
Score = 34.6 bits (79), Expect = 0.081
Identities = 13/106 (12%), Positives = 29/106 (27%), Gaps = 26/106 (24%)
Query: 119 MSGAISSDDSDDENDEDDTSDDDTESGQGSMKKYKEQVVSSQDGRKRRKVMFDDDLEDNM 178
MS + + +EN ED + ++ + E
Sbjct: 1 MSDYEEAFNDGNENFEDFDVEHFSDE--------------------------ETYEEKPQ 34
Query: 179 DDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSK 224
D + D + + E+ ++ E+ +E+ K
Sbjct: 35 FKDGETTDANGKTIVTGGNGPEDFQQHEQIRRKTLKEKAIPKDQRA 80
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A
{Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Length = 417
Score = 49.6 bits (117), Expect = 5e-06
Identities = 13/52 (25%), Positives = 30/52 (57%)
Query: 172 DDLEDNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNS 223
+ + +++ D+D+D+E DDD+ ++++ EE+++ E+ E K S
Sbjct: 366 EFEFEEDEEEADEDEDEEEDDDHGLEDDDGESAEEQDDFAGRPEQAPECKQS 417
Score = 48.4 bits (114), Expect = 1e-05
Identities = 6/48 (12%), Positives = 25/48 (52%)
Query: 175 EDNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKN 222
+ ++D+++ + D+D +ED++ E+++ ++ ++ +
Sbjct: 363 AALEFEFEEDEEEADEDEDEEEDDDHGLEDDDGESAEEQDDFAGRPEQ 410
Score = 48.4 bits (114), Expect = 1e-05
Identities = 7/53 (13%), Positives = 31/53 (58%)
Query: 174 LEDNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSKNE 226
++ + ++D+++ +D+++E++++ E+++ E ++++ A + E
Sbjct: 361 TGAALEFEFEEDEEEADEDEDEEEDDDHGLEDDDGESAEEQDDFAGRPEQAPE 413
Score = 47.6 bits (112), Expect = 2e-05
Identities = 13/51 (25%), Positives = 29/51 (56%)
Query: 170 FDDDLEDNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEK 220
F + ++D+++ D++ D++ D+D+ E ++ E EE DD + E+
Sbjct: 360 FTGAALEFEFEEDEEEADEDEDEEEDDDHGLEDDDGESAEEQDDFAGRPEQ 410
Score = 37.6 bits (86), Expect = 0.020
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 189 ETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSKNEHVQELTAKQKNP 238
+ E++EEE++E+E+ EEDDD + + S E ++ P
Sbjct: 363 AALEFEFEEDEEEADEDEDEEEDDDHGLEDDDGESAEEQDDFAGRPEQAP 412
Score = 31.4 bits (70), Expect = 1.6
Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 26/97 (26%)
Query: 170 FDDDLEDNMDDDDDDDDDDETDDDND--------------------------EDNEEESE 203
FD N D D++ ++D E D E E+E E
Sbjct: 316 FDPPKIQNEDQDEELEEDLEERLALDYSIGEQLKDKLIPRAVDWFTGAALEFEFEEDEEE 375
Query: 204 EEEENEEDDDEERKAEKKNSKNEHVQELTAKQKNPKA 240
+E+ +E++D++ E + ++ Q+ A +
Sbjct: 376 ADEDEDEEEDDDHGLEDDDGESAEEQDDFAGRPEQAP 412
Score = 31.4 bits (70), Expect = 1.6
Identities = 9/44 (20%), Positives = 15/44 (34%)
Query: 285 NSKEEEEEEQEDSAFSDESADDNSSDEDETVEPKTHKDSKNPEE 328
EEE +E ED D+ ++ E + + E
Sbjct: 370 EEDEEEADEDEDEEEDDDHGLEDDDGESAEEQDDFAGRPEQAPE 413
Score = 31.1 bits (69), Expect = 2.2
Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 32/84 (38%)
Query: 121 GAISSDDSDDENDEDDTSDDDTESGQGSMKKYKEQVVSSQDGRKRRKVMFDDDLEDNMDD 180
GA + +++ +E D +D+ E DDD
Sbjct: 362 GAALEFEFEEDEEEADEDEDEEE---------------------------DDD-----HG 389
Query: 181 DDDDDDDDETDDDNDEDNEEESEE 204
+DDD + + D+ E++ E
Sbjct: 390 LEDDDGESAEEQDDFAGRPEQAPE 413
>3fs3_A Nucleosome assembly protein 1, putative; protein localization,
histone recognition, structural analysis, CHA; 2.30A
{Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A
Length = 359
Score = 47.2 bits (111), Expect = 2e-05
Identities = 9/60 (15%), Positives = 19/60 (31%)
Query: 171 DDDLEDNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSKNEHVQE 230
+ + + D D E + + + S +EN D E ++ + E
Sbjct: 295 ESESNSIVSDVDSSYSSSENNSNYNSYESNNSAYNDENSNVDTNEYDDNEEEEEGAKSNE 354
Score = 44.9 bits (105), Expect = 1e-04
Identities = 6/67 (8%), Positives = 20/67 (29%)
Query: 172 DDLEDNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSKNEHVQEL 231
+E + D D + +N+ + +++ E +++ E
Sbjct: 292 IIIESESNSIVSDVDSSYSSSENNSNYNSYESNNSAYNDENSNVDTNEYDDNEEEEEGAK 351
Query: 232 TAKQKNP 238
+ +
Sbjct: 352 SNEDPLT 358
Score = 44.5 bits (104), Expect = 1e-04
Identities = 9/61 (14%), Positives = 23/61 (37%)
Query: 179 DDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSKNEHVQELTAKQKNP 238
+ + D D + ++ ++ S E + +D+ + NE +E ++P
Sbjct: 297 ESNSIVSDVDSSYSSSENNSNYNSYESNNSAYNDENSNVDTNEYDDNEEEEEGAKSNEDP 356
Query: 239 K 239
Sbjct: 357 L 357
Score = 43.0 bits (100), Expect = 4e-04
Identities = 6/57 (10%), Positives = 16/57 (28%)
Query: 170 FDDDLEDNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSKNE 226
+ + ++ + D D + N E D++ + + E
Sbjct: 289 YLGIIIESESNSIVSDVDSSYSSSENNSNYNSYESNNSAYNDENSNVDTNEYDDNEE 345
Score = 42.2 bits (98), Expect = 8e-04
Identities = 7/65 (10%), Positives = 24/65 (36%)
Query: 171 DDDLEDNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSKNEHVQE 230
+ E N D D ++++++ ++ E + +E + + + + + E +
Sbjct: 293 IIESESNSIVSDVDSSYSSSENNSNYNSYESNNSAYNDENSNVDTNEYDDNEEEEEGAKS 352
Query: 231 LTAKQ 235
Sbjct: 353 NEDPL 357
Score = 41.1 bits (95), Expect = 0.002
Identities = 6/50 (12%), Positives = 16/50 (32%)
Query: 178 MDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSKNEH 227
+ + + +D D+ + E + E ++ NE+
Sbjct: 291 GIIIESESNSIVSDVDSSYSSSENNSNYNSYESNNSAYNDENSNVDTNEY 340
Score = 40.3 bits (93), Expect = 0.003
Identities = 10/60 (16%), Positives = 21/60 (35%)
Query: 171 DDDLEDNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSKNEHVQE 230
++ D D + ++N N ES N+E+ + + N + E +
Sbjct: 292 IIIESESNSIVSDVDSSYSSSENNSNYNSYESNNSAYNDENSNVDTNEYDDNEEEEEGAK 351
Score = 33.0 bits (74), Expect = 0.63
Identities = 10/90 (11%), Positives = 28/90 (31%), Gaps = 27/90 (30%)
Query: 126 DDSDDENDEDDTSDDDTESGQGSMKKYKEQVVSSQDGRKRRKVMFDDDLEDNMDDDDDDD 185
+ + D S + +++ N + ++
Sbjct: 295 ESESNSIVSDVDSSYSSS---------------------------ENNSNYNSYESNNSA 327
Query: 186 DDDETDDDNDEDNEEESEEEEENEEDDDEE 215
+DE + + + ++ EEEE + ++D
Sbjct: 328 YNDENSNVDTNEYDDNEEEEEGAKSNEDPL 357
Score = 31.4 bits (70), Expect = 1.8
Identities = 13/95 (13%), Positives = 30/95 (31%), Gaps = 30/95 (31%)
Query: 118 AMSGAISSDDSDDENDEDDTSDDDTESGQGSMKKYKEQVVSSQDGRKRRKVMFDDDLEDN 177
+ +S SD ++ + ++ +
Sbjct: 293 IIESESNSIVSDVDSSYSSSENN------------------------------SNYNSYE 322
Query: 178 MDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDD 212
++ +D++ D + +DNEEE E + NE+
Sbjct: 323 SNNSAYNDENSNVDTNEYDDNEEEEEGAKSNEDPL 357
>3h0g_F DNA-directed RNA polymerases I, II, and III subunit rpabc2;
transcription, multi-protein complex, DNA- binding,
magnesium; 3.65A {Schizosaccharomyces pombe}
Length = 142
Score = 42.7 bits (100), Expect = 9e-05
Identities = 8/62 (12%), Positives = 20/62 (32%)
Query: 178 MDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSKNEHVQELTAKQKN 237
M D ++D+ +E+ +E +E + E + + ++
Sbjct: 1 MSDYEEDEAFGMDGAVMEEEVDELEMIDENGQSQQGVSHPGEPSTTVITEDVASSKTAQS 60
Query: 238 PK 239
K
Sbjct: 61 GK 62
Score = 42.0 bits (98), Expect = 2e-04
Identities = 9/69 (13%), Positives = 25/69 (36%)
Query: 169 MFDDDLEDNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSKNEHV 228
M D + ++ D +++ + + ++N + + E + +SK
Sbjct: 1 MSDYEEDEAFGMDGAVMEEEVDELEMIDENGQSQQGVSHPGEPSTTVITEDVASSKTAQS 60
Query: 229 QELTAKQKN 237
+ AK+
Sbjct: 61 GKAVAKEDR 69
Score = 36.2 bits (83), Expect = 0.019
Identities = 13/105 (12%), Positives = 29/105 (27%), Gaps = 24/105 (22%)
Query: 125 SDDSDDENDEDDTSDDDTESGQGSMKKYKEQVVSSQDGRKRRKVMFDDDLEDNMDDDDDD 184
SD +DE D + + E + + +++N
Sbjct: 2 SDYEEDEAFGMDGAVMEEEVDE------------------------LEMIDENGQSQQGV 37
Query: 185 DDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSKNEHVQ 229
E ++ S+ + + E+R +K E +
Sbjct: 38 SHPGEPSTTVITEDVASSKTAQSGKAVAKEDRTTTPYMTKYERAR 82
Score = 30.0 bits (67), Expect = 2.2
Identities = 11/73 (15%), Positives = 20/73 (27%)
Query: 195 DEDNEEESEEEEENEEDDDEERKAEKKNSKNEHVQELTAKQKNPKAFTFQSVIKGERKFR 254
E++E + EE+ DE ++ + V S +
Sbjct: 4 YEEDEAFGMDGAVMEEEVDELEMIDENGQSQQGVSHPGEPSTTVITEDVASSKTAQSGKA 63
Query: 255 STKPTVVPQPRMS 267
K P M+
Sbjct: 64 VAKEDRTTTPYMT 76
>1qkl_A RPB6, DNA-directed RNA polymerase II 14.4 KD polypeptide;
transcription; NMR {Homo sapiens} SCOP: a.143.1.2
Length = 127
Score = 42.3 bits (99), Expect = 9e-05
Identities = 13/52 (25%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 178 MDDDDDDDDDDETDDDNDEDNEEESE-EEEENEEDDDEERKAEKKNSKNEHV 228
M D++D+ D D+ DD +++ ++ E EEE +E+ + E+ + + +
Sbjct: 1 MSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRI 52
Score = 36.5 bits (84), Expect = 0.012
Identities = 14/54 (25%), Positives = 26/54 (48%)
Query: 179 DDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSKNEHVQELT 232
+D+ D DD D+ ++D D+ E +EEE + + + + N K +T
Sbjct: 5 EDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMT 58
Score = 36.1 bits (83), Expect = 0.013
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 172 DDLEDNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSK 224
D EDN D DD DD +++ D+ E+ EEE +E E + + +K+ +
Sbjct: 2 SDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITT 54
Score = 33.4 bits (76), Expect = 0.12
Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 169 MFDDDLEDNMDDDDDDDDDDETDDDNDEDNEEESEEE---EENEEDDDEERKAEKKNSKN 225
M D++ + DD DD ++D+ DD + + E + E +++R +K
Sbjct: 1 MSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKY 60
Query: 226 EHVQ 229
E +
Sbjct: 61 ERAR 64
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone
chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A
{Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A
3c9b_A 3q33_B* 3q35_B* 3dm7_A
Length = 264
Score = 43.6 bits (102), Expect = 2e-04
Identities = 10/44 (22%), Positives = 20/44 (45%)
Query: 178 MDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKK 221
D +D++ E+ D D+E++ E + +E + KK
Sbjct: 218 EAQRDLEDEEGESGLSADGDSEDDDGSLGEVDLPLSDEEPSSKK 261
Score = 41.2 bits (96), Expect = 0.001
Identities = 5/44 (11%), Positives = 16/44 (36%)
Query: 181 DDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSK 224
D +D++ + + + E+ + + + + K K
Sbjct: 220 QRDLEDEEGESGLSADGDSEDDDGSLGEVDLPLSDEEPSSKKRK 263
Score = 40.9 bits (95), Expect = 0.002
Identities = 9/42 (21%), Positives = 21/42 (50%)
Query: 180 DDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKK 221
D +D++ + D D ++++ S E + D+E ++K
Sbjct: 222 DLEDEEGESGLSADGDSEDDDGSLGEVDLPLSDEEPSSKKRK 263
Score = 40.1 bits (93), Expect = 0.003
Identities = 9/49 (18%), Positives = 23/49 (46%)
Query: 169 MFDDDLEDNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERK 217
+ + D D++ + + D ++D+ + E + +EE ++RK
Sbjct: 215 YYAEAQRDLEDEEGESGLSADGDSEDDDGSLGEVDLPLSDEEPSSKKRK 263
Score = 38.5 bits (89), Expect = 0.008
Identities = 6/40 (15%), Positives = 19/40 (47%)
Query: 179 DDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKA 218
+D++ + D D+++D+ E + +++ +K
Sbjct: 223 LEDEEGESGLSADGDSEDDDGSLGEVDLPLSDEEPSSKKR 262
Score = 31.6 bits (71), Expect = 1.2
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 189 ETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSKNE 226
D DE+ E + ++E+DD + + S E
Sbjct: 219 AQRDLEDEEGESGLSADGDSEDDDGSLGEVDLPLSDEE 256
Score = 29.3 bits (65), Expect = 7.1
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 126 DDSDDENDEDDTSDDDTESGQGSMKKYKEQVVSSQDGRKRRKV 168
D D+E + ++D D+E GS+ + + + K+RKV
Sbjct: 222 DLEDEEGESGLSADGDSEDDDGSLGEVDLPLSDEEPSSKKRKV 264
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein
complex, translation regulation; 2.74A
{Schizosaccharomyces pombe}
Length = 592
Score = 43.6 bits (103), Expect = 4e-04
Identities = 14/153 (9%), Positives = 45/153 (29%)
Query: 176 DNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSKNEHVQELTAKQ 235
D+ + D++ +++ T++ +E + E E++ E +
Sbjct: 13 DDYELDEEPGEEELTEEQEEEFRSAVATVRETLLGVPISEKEIADTVWYYYFDVEKSVNY 72
Query: 236 KNPKAFTFQSVIKGERKFRSTKPTVVPQPRMSDKDLAIRHKITSALAGLNSKEEEEEEQE 295
KA + + + + + ++ + L+ + +E +
Sbjct: 73 LLQKASSKAGAKEKQNTDSQKEKKQNKSKEALADAKDPLDESSNGIKNLSLNKNDEPAFQ 132
Query: 296 DSAFSDESADDNSSDEDETVEPKTHKDSKNPEE 328
+ S ++ E + K +
Sbjct: 133 TNGEVKMKNSSESDNQPEKKKIKKQNPTDLVSV 165
Score = 37.0 bits (86), Expect = 0.038
Identities = 20/167 (11%), Positives = 52/167 (31%), Gaps = 5/167 (2%)
Query: 163 RKRRKVMFDDDLEDNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKN 222
R + + DD D ++ +++ +E +++ E + E
Sbjct: 5 RDVKNLDLDDYELD--EEPGEEELTEEQEEEFRSAVATVRETLLGVPISEKEIADTVWYY 62
Query: 223 SKN-EHVQELTAKQKNPKAFTFQSVIKGERKFRSTKPTVVPQPRMSDKDLAIRHKITSAL 281
+ E ++ + KA + +K + + + KD
Sbjct: 63 YFDVEKSVNYLLQKASSKAGAKEKQNTDSQKEKKQNKS--KEALADAKDPLDESSNGIKN 120
Query: 282 AGLNSKEEEEEEQEDSAFSDESADDNSSDEDETVEPKTHKDSKNPEE 328
LN +E + S++ ++ E + ++ + D + E
Sbjct: 121 LSLNKNDEPAFQTNGEVKMKNSSESDNQPEKKKIKKQNPTDLVSVPE 167
Score = 36.6 bits (85), Expect = 0.053
Identities = 26/152 (17%), Positives = 49/152 (32%), Gaps = 7/152 (4%)
Query: 184 DDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSKNEHVQELTAK------QKN 237
D DD E D++ E+ E E+EEE R+ +E T +K+
Sbjct: 11 DLDDYELDEEPGEEELTE-EQEEEFRSAVATVRETLLGVPISEKEIADTVWYYYFDVEKS 69
Query: 238 PKAFTFQSVIKGERKFRSTKPTVVPQPRMSDKDLAIRHKITSALAGLNSKEEEEEEQEDS 297
++ K K + + + + K+ K + K + ++
Sbjct: 70 VNYLLQKASSKAGAKEKQNTDSQKEKKQNKSKEALADAKDPLDESSNGIKNLSLNKNDEP 129
Query: 298 AFSDESADDNSSDEDETVEPKTHKDSKNPEED 329
AF + + +P+ K K D
Sbjct: 130 AFQTNGEVKMKNSSESDNQPEKKKIKKQNPTD 161
Score = 31.6 bits (72), Expect = 2.0
Identities = 12/151 (7%), Positives = 54/151 (35%), Gaps = 3/151 (1%)
Query: 126 DDSDDENDEDDTSDDDTESGQGSMKKYKEQVVSSQDGRKRRK---VMFDDDLEDNMDDDD 182
+ D+E E++ +++ E + ++ +E ++ K + D+E +++
Sbjct: 15 YELDEEPGEEELTEEQEEEFRSAVATVRETLLGVPISEKEIADTVWYYYFDVEKSVNYLL 74
Query: 183 DDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSKNEHVQELTAKQKNPKAFT 242
+ + ++ +++ +++E + + ++S L +
Sbjct: 75 QKASSKAGAKEKQNTDSQKEKKQNKSKEALADAKDPLDESSNGIKNLSLNKNDEPAFQTN 134
Query: 243 FQSVIKGERKFRSTKPTVVPQPRMSDKDLAI 273
+ +K + + + + +++
Sbjct: 135 GEVKMKNSSESDNQPEKKKIKKQNPTDLVSV 165
>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer
complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ
HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F*
1p84_F* 2ibz_H* 1kyo_F*
Length = 146
Score = 40.6 bits (94), Expect = 6e-04
Identities = 11/60 (18%), Positives = 38/60 (63%)
Query: 171 DDDLEDNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSKNEHVQE 230
DD+ + + ++ ++E D++++++E+E ++++++E++++EE ++ EH +
Sbjct: 27 DDNEQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEEEEEVTDQLEDLREHFKN 86
Score = 40.6 bits (94), Expect = 7e-04
Identities = 14/49 (28%), Positives = 33/49 (67%)
Query: 171 DDDLEDNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAE 219
DDD E + + + ++ +E + D DED +E+ +++++++ED++EE +
Sbjct: 26 DDDNEQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEEEEEVT 74
Score = 39.5 bits (91), Expect = 0.001
Identities = 19/69 (27%), Positives = 41/69 (59%)
Query: 156 VVSSQDGRKRRKVMFDDDLEDNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEE 215
VV++ + + + ++++ D+D+DE +D++D+D+++E EEEEE D E+
Sbjct: 20 VVAAAEDDDNEQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEEEEEVTDQLED 79
Query: 216 RKAEKKNSK 224
+ KN++
Sbjct: 80 LREHFKNTE 88
Score = 39.5 bits (91), Expect = 0.002
Identities = 13/57 (22%), Positives = 34/57 (59%)
Query: 171 DDDLEDNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSKNEH 227
++ + + ++++ D+DE +D++++D++++ E+EEE EE D+ + E
Sbjct: 33 EEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEEEEEVTDQLEDLREHFKNTEE 89
Score = 35.6 bits (81), Expect = 0.033
Identities = 21/57 (36%), Positives = 35/57 (61%)
Query: 171 DDDLEDNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSKNEH 227
++ E+ D+D+D+D+DE DDD+D+++EEE EE + ED E K ++ H
Sbjct: 39 GEEKEEENGDEDEDEDEDEDDDDDDDEDEEEEEEVTDQLEDLREHFKNTEEGKALVH 95
Score = 35.3 bits (80), Expect = 0.035
Identities = 13/65 (20%), Positives = 39/65 (60%)
Query: 176 DNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSKNEHVQELTAKQ 235
++ D++ ++ E ++ +E+ +E+ +E+E+ ++DDD++ E++ + +++L
Sbjct: 25 EDDDNEQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEEEEEVTDQLEDLREHF 84
Query: 236 KNPKA 240
KN +
Sbjct: 85 KNTEE 89
Score = 30.2 bits (67), Expect = 1.7
Identities = 17/72 (23%), Positives = 37/72 (51%)
Query: 171 DDDLEDNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSKNEHVQE 230
+++ D +D+D+D+DDD+ DD+++E+ EE +++ E+ E + + E E
Sbjct: 43 EEENGDEDEDEDEDEDDDDDDDEDEEEEEEVTDQLEDLREHFKNTEEGKALVHHYEECAE 102
Query: 231 LTAKQKNPKAFT 242
Q+ +
Sbjct: 103 RVKIQQQQPGYA 114
Score = 29.1 bits (64), Expect = 4.6
Identities = 11/46 (23%), Positives = 25/46 (54%)
Query: 181 DDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSKNE 226
+DDD++ + + + +EE +E+ +ED+DE+ + + E
Sbjct: 24 AEDDDNEQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEE 69
Score = 28.3 bits (62), Expect = 8.9
Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 16/89 (17%)
Query: 122 AISSDDSDDENDEDDTSDDDTESGQGSMKKYKEQVVSSQDGRKRRKVMFDDDLEDNMDDD 181
+ + E+D+++ ++ G+ ++ + +D+ ED +DD
Sbjct: 16 TVVPVVAAAEDDDNEQHEEKAAEGEEKEEENGD----------------EDEDEDEDEDD 59
Query: 182 DDDDDDDETDDDNDEDNEEESEEEEENEE 210
DDDDD+DE +++ D E+ E +N E
Sbjct: 60 DDDDDEDEEEEEEVTDQLEDLREHFKNTE 88
>1zyi_A Methylosome subunit picln; PH domain, cell volume regulation, RNA
splicing, translation; NMR {Canis lupus familiaris}
Length = 171
Score = 39.8 bits (92), Expect = 0.002
Identities = 27/173 (15%), Positives = 63/173 (36%), Gaps = 18/173 (10%)
Query: 35 PVCTAPNNEGIHRQEFEIEPITFIECNNDINSMIDISKVADLVLLLIDASFGFEMEIFEF 94
+ EG+ +Q+ E E + + I++ + L + GF E+
Sbjct: 15 SFPPPGSAEGLRQQQPETE--AVLNGKGLGTGTLYIAE--SRLSWLDGSGLGFS---LEY 67
Query: 95 LNICQVHGESTEKSMMEIDGIHGAMSGAISSDDSDDENDEDDTSDDDTESGQGSMKKYKE 154
I +H S + + + ++ ++ + + +E+D+ DD E
Sbjct: 68 PTIS-LHAVSRDLNAYPREHLYVMVNAKFGEESKESVAEEEDSDDDVEPI--------AE 118
Query: 155 QVVSSQDGRKRRKV--MFDDDLEDNMDDDDDDDDDDETDDDNDEDNEEESEEE 205
D + + + D +D+D DD + ++ + E +E+ E +
Sbjct: 119 FRFVPSDKSALEAMFTAMCECQALHPDPEDEDSDDYDGEEYDVEAHEQGQEND 171
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics,
nysgxrc T18, GTPase, PSI, protein structure initiative;
HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Length = 282
Score = 40.4 bits (95), Expect = 0.002
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 392 KQKNPKAFTFQSVIKGERKFRRKEDIQAKKHHVPQVDRTPLEPPPIVVAVVGPPQVGKST 451
+ + ++ + SV + + ++ ++P I ++G P VGKST
Sbjct: 76 ENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKST 135
Query: 452 LIRCLI-KNFTKT 463
LI L KN KT
Sbjct: 136 LINRLAKKNIAKT 148
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay,
ribosomal protein,hydrolase; 9.50A {Saccharomyces
cerevisiae}
Length = 611
Score = 40.9 bits (96), Expect = 0.003
Identities = 22/155 (14%), Positives = 50/155 (32%), Gaps = 5/155 (3%)
Query: 175 EDNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSKNEHVQELTAK 234
D D DD D + + +D N++E E NE + + + + +L
Sbjct: 4 SDYSDGADDMPDFHDEGEFDDYLNDDEY--ELMNEVFPTLKAQLQDYQGWDNLSLKLALF 61
Query: 235 QKNPKAFTFQSVIKGERKFRSTKPTVVPQPRMSDKDLAIRHKITSALAGLNSKEEEEEEQ 294
N + + +K K + T + S K+ + + +
Sbjct: 62 DNNFDLESTLAELKKTLKKKKTPKKPIAAANGSANVTQ---KLANISISQQRPNDRLPDW 118
Query: 295 EDSAFSDESADDNSSDEDETVEPKTHKDSKNPEED 329
D S+ + +++++TV+ +
Sbjct: 119 LDEEESEGERNGEEANDEKTVQRYYKTTVPTKPKK 153
Score = 38.9 bits (91), Expect = 0.011
Identities = 24/162 (14%), Positives = 49/162 (30%), Gaps = 12/162 (7%)
Query: 171 DDDLEDNMDDDDDDDDDDE--TDDDNDEDNE----EESEEEEENEEDDDEERKAEKKNSK 224
D D+M D D+ + D+ DD+ + NE +++ ++ D+ + A N+
Sbjct: 6 YSDGADDMPDFHDEGEFDDYLNDDEYELMNEVFPTLKAQLQDYQGWDNLSLKLALFDNNF 65
Query: 225 N--EHVQELTAKQKNPKAFTFQSVIKGERKFRSTKPTVVPQPRMSDKDLAIRHKITSALA 282
+ + EL K K + K + + D
Sbjct: 66 DLESTLAELKKTLKKKKTPKKPIAAANGSANVTQKLANISISQQRPNDRLPDWLDEEESE 125
Query: 283 GLNSKEEEEEEQEDSAFSDESADDNSSDEDETVE----PKTH 320
G + EE +E+ + + + H
Sbjct: 126 GERNGEEANDEKTVQRYYKTTVPTKPKKPHDISAFVKSALPH 167
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma
factor, transcription regulation; 2.60A {Escherichia
coli} SCOP: a.177.1.1
Length = 339
Score = 39.5 bits (92), Expect = 0.004
Identities = 14/68 (20%), Positives = 25/68 (36%)
Query: 169 MFDDDLEDNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSKNEHV 228
++DL + ++ DDD DED E+ ++ +++ D E EK
Sbjct: 60 NAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQY 119
Query: 229 QELTAKQK 236
K
Sbjct: 120 VVTRDTIK 127
Score = 38.0 bits (88), Expect = 0.017
Identities = 9/53 (16%), Positives = 25/53 (47%)
Query: 172 DDLEDNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSK 224
DL D + ++D T + +E +++E+E+++D + + ++
Sbjct: 50 SDLITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNS 102
Score = 37.2 bits (86), Expect = 0.026
Identities = 13/63 (20%), Positives = 29/63 (46%)
Query: 174 LEDNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSKNEHVQELTA 233
L D + D + +++ E S+E+ +++ED+DEE + + + A
Sbjct: 49 LSDLITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELA 108
Query: 234 KQK 236
++K
Sbjct: 109 REK 111
Score = 32.6 bits (74), Expect = 0.66
Identities = 19/56 (33%), Positives = 28/56 (50%)
Query: 171 DDDLEDNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSKNE 226
+DL+D+ D+D++D DDD DDDN D E E+ E R K ++
Sbjct: 78 QEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSH 133
Score = 31.8 bits (72), Expect = 1.4
Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 171 DDDLEDNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSKNEHVQE 230
+ + +D DDD+DE D ++ +++ ++++ + + E+ AE +
Sbjct: 69 ATHVGSELSQEDLDDDEDE---DEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDT 125
Query: 231 LTAKQKNPKAF 241
+ AK ++
Sbjct: 126 IKAKGRSHATA 136
Score = 31.8 bits (72), Expect = 1.4
Identities = 12/66 (18%), Positives = 29/66 (43%)
Query: 171 DDDLEDNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSKNEHVQE 230
+L DDD+D+D+++ DDD+ +D+ E + + + +++ +
Sbjct: 73 GSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRS 132
Query: 231 LTAKQK 236
Q+
Sbjct: 133 HATAQE 138
Score = 29.5 bits (66), Expect = 6.0
Identities = 13/66 (19%), Positives = 27/66 (40%)
Query: 171 DDDLEDNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSKNEHVQE 230
+ D+ +D+D++D DD++ DD++ + E + E+ + K H
Sbjct: 77 SQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATA 136
Query: 231 LTAKQK 236
K
Sbjct: 137 QEEILK 142
Score = 29.1 bits (65), Expect = 8.5
Identities = 11/67 (16%), Positives = 26/67 (38%)
Query: 171 DDDLEDNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSKNEHVQE 230
+ ED DD+D+D++D + D +D+++ + E+ E +
Sbjct: 75 ELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHA 134
Query: 231 LTAKQKN 237
++
Sbjct: 135 TAQEEIL 141
>1rm1_C Transcription initiation factor IIA large chain; yeast TFIIA, TBP
protein, ATA-box DNA, transcription/DNA complex; 2.50A
{Saccharomyces cerevisiae}
Length = 286
Score = 39.1 bits (89), Expect = 0.006
Identities = 21/107 (19%), Positives = 40/107 (37%)
Query: 96 NICQVHGESTEKSMMEIDGIHGAMSGAISSDDSDDENDEDDTSDDDTESGQGSMKKYKEQ 155
V + + EI+ + + D+ +DD ++ K+ EQ
Sbjct: 140 TNADVTSQPKIEVKPEIELTINNANITTVENIDDESEKKDDEEKEEDVEKTRKEKEQIEQ 199
Query: 156 VVSSQDGRKRRKVMFDDDLEDNMDDDDDDDDDDETDDDNDEDNEEES 202
V KR ++ D++ +DD DDD E ++D ++N
Sbjct: 200 VKLQAKKEKRSALLDTDEVGSELDDSDDDYLISEGEEDGPDENLMLC 246
Score = 38.0 bits (86), Expect = 0.012
Identities = 14/86 (16%), Positives = 33/86 (38%)
Query: 127 DSDDENDEDDTSDDDTESGQGSMKKYKEQVVSSQDGRKRRKVMFDDDLEDNMDDDDDDDD 186
+ N T ++ + + + KE+ V K + + D D
Sbjct: 157 ELTINNANITTVENIDDESEKKDDEEKEEDVEKTRKEKEQIEQVKLQAKKEKRSALLDTD 216
Query: 187 DDETDDDNDEDNEEESEEEEENEEDD 212
+ ++ D+ +D+ SE EE+ +++
Sbjct: 217 EVGSELDDSDDDYLISEGEEDGPDEN 242
Score = 37.6 bits (85), Expect = 0.016
Identities = 15/115 (13%), Positives = 45/115 (39%)
Query: 103 ESTEKSMMEIDGIHGAMSGAISSDDSDDENDEDDTSDDDTESGQGSMKKYKEQVVSSQDG 162
+ T + +E+ + ++ +DE + DD+ + + +++ +
Sbjct: 143 DVTSQPKIEVKPEIELTINNANITTVENIDDESEKKDDEEKEEDVEKTRKEKEQIEQVKL 202
Query: 163 RKRRKVMFDDDLEDNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERK 217
+ +++ D + + DD DDD + +ED +E+ ++ + +
Sbjct: 203 QAKKEKRSALLDTDEVGSELDDSDDDYLISEGEEDGPDENLMLCLYDKVTRTKAR 257
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET:
GDP; 2.50A {Bacillus subtilis}
Length = 436
Score = 39.4 bits (93), Expect = 0.006
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 423 HVPQVDRTPLEPPPIVVAVVGPPQVGKSTLI 453
H + T I ++G P VGKS+L+
Sbjct: 162 HFKNIPETKYNEEVIQFCLIGRPNVGKSSLV 192
Score = 33.6 bits (78), Expect = 0.41
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 438 VVAVVGPPQVGKSTL 452
VVA+VG P VGKST+
Sbjct: 5 VVAIVGRPNVGKSTI 19
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 39.3 bits (92), Expect = 0.006
Identities = 15/55 (27%), Positives = 32/55 (58%)
Query: 166 RKVMFDDDLEDNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEK 220
R+V + + DD ++ DE ++D +E+ E +S E E +EE+ +++ A++
Sbjct: 326 REVFSTRGRGELDELDDMEELTDEEEEDEEEEAESQSPEPETSEEEKEDKELADE 380
Score = 35.8 bits (83), Expect = 0.084
Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 13/77 (16%)
Query: 173 DLEDNMDDDDDD-------------DDDDETDDDNDEDNEEESEEEEENEEDDDEERKAE 219
+L N ++DD + + DD +E +EE E+EEE E E +
Sbjct: 309 ELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEELTDEEEEDEEEEAESQSPEPETS 368
Query: 220 KKNSKNEHVQELTAKQK 236
++ +++ + + +K
Sbjct: 369 EEEKEDKELADELSKAH 385
>3k8p_C DSL1, KLLA0C02695P; intracellular trafficking, DSL1 complex,
multisubunit tethering complex, snare proteins; 2.60A
{Kluyveromyces lactis}
Length = 357
Score = 38.9 bits (90), Expect = 0.007
Identities = 10/66 (15%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 157 VSSQDGRKRRKVMFDDDLEDNMDDDDDDDDDDETD-DDNDEDNEEESEEEEENEEDDDEE 215
V + + + DLE + ++ D + ++N + +E + +EE + + D+
Sbjct: 36 VQFKTDGGKYEKGEKQDLELSEKKTENGKDTESWGWNENQDSDEHDGWDEELDIDVDNVP 95
Query: 216 RKAEKK 221
+
Sbjct: 96 IQVSVF 101
Score = 38.1 bits (88), Expect = 0.016
Identities = 10/80 (12%), Positives = 31/80 (38%), Gaps = 10/80 (12%)
Query: 130 DENDEDDTSDDDTESGQGSMKKYKEQVVSSQDGRKRRKVMFDDDLEDNMDDDDDDDDDDE 189
E + + ++ G +K ++Q + + + E+ D + ++++
Sbjct: 26 PEEEYHELVSVQFKTDGGKYEKGEKQDLELSEKKT----------ENGKDTESWGWNENQ 75
Query: 190 TDDDNDEDNEEESEEEEENE 209
D++D +EE + +
Sbjct: 76 DSDEHDGWDEELDIDVDNVP 95
Score = 32.4 bits (73), Expect = 1.0
Identities = 8/80 (10%), Positives = 27/80 (33%)
Query: 152 YKEQVVSSQDGRKRRKVMFDDDLEDNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEED 211
+E+ + + + E + + ++ D ++ NE + +E + ++
Sbjct: 26 PEEEYHELVSVQFKTDGGKYEKGEKQDLELSEKKTENGKDTESWGWNENQDSDEHDGWDE 85
Query: 212 DDEERKAEKKNSKNEHVQEL 231
+ + + VQ
Sbjct: 86 ELDIDVDNVPIQVSVFVQSA 105
Score = 31.6 bits (71), Expect = 1.8
Identities = 12/72 (16%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
Query: 171 DDDLEDNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSKNEHVQE 230
D + + D + + +T++ D ++ +E ++ + + D + + N +Q
Sbjct: 41 DGGKYEKGEKQDLELSEKKTENGKDTESWGWNENQDSD--EHDGWDEELDIDVDNVPIQV 98
Query: 231 LTAKQKNPKAFT 242
Q K FT
Sbjct: 99 SVFVQSAAKVFT 110
>2dyt_A Autophagy-related protein 3; E2 fold, ligase; 2.50A {Saccharomyces
cerevisiae}
Length = 312
Score = 39.0 bits (90), Expect = 0.007
Identities = 12/86 (13%), Positives = 33/86 (38%), Gaps = 5/86 (5%)
Query: 122 AISSDDSDDENDEDDTSDDDTESGQGSMKKYKEQVVSSQDGRKRRKVMFDDDLEDNMDDD 181
+ D + +D +DD GS ++ + + K DD+++ + D
Sbjct: 87 EVEGPDVIMKGFAEDGDEDDVLEYIGSETEHVQSTPAGGT-----KDSSIDDIDELIQDM 141
Query: 182 DDDDDDDETDDDNDEDNEEESEEEEE 207
+ ++D+ D + +++ +
Sbjct: 142 EIKEEDENDDTEEFNAKGGLAKDMAQ 167
Score = 33.7 bits (76), Expect = 0.35
Identities = 9/58 (15%), Positives = 19/58 (32%)
Query: 171 DDDLEDNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSKNEHV 228
+++ D + DD DE ++ +EE+ +D +E
Sbjct: 111 IGSETEHVQSTPAGGTKDSSIDDIDELIQDMEIKEEDENDDTEEFNAKGGLAKDMAQE 168
Score = 31.3 bits (70), Expect = 1.6
Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 18/80 (22%)
Query: 171 DDDLEDNMDDDDDDDDDDETDDD------------------NDEDNEEESEEEEENEEDD 212
D + +D D+DD E +D D + E +E +E+D
Sbjct: 91 PDVIMKGFAEDGDEDDVLEYIGSETEHVQSTPAGGTKDSSIDDIDELIQDMEIKEEDEND 150
Query: 213 DEERKAEKKNSKNEHVQELT 232
D E K + QE
Sbjct: 151 DTEEFNAKGGLAKDMAQERY 170
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double
chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces
cerevisiae}
Length = 800
Score = 39.0 bits (91), Expect = 0.011
Identities = 12/77 (15%), Positives = 24/77 (31%), Gaps = 10/77 (12%)
Query: 171 DDDLEDNMDDDDDDDDDDETDDDNDEDNEEESEEEE----------ENEEDDDEERKAEK 220
DDDL ++ DD ++ E + N + + + E+ K
Sbjct: 4 DDDLLESEDDYGSEEALSEENVHEASANPQPEDFHGIDIVINHRLKTSLEEGKVLEKTVP 63
Query: 221 KNSKNEHVQELTAKQKN 237
+ + E K +
Sbjct: 64 DLNNCKENYEFLIKWTD 80
Score = 32.0 bits (73), Expect = 1.5
Identities = 13/71 (18%), Positives = 21/71 (29%)
Query: 183 DDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSKNEHVQELTAKQKNPKAFT 242
DDD + DD E+ E E + E+ + L + K
Sbjct: 4 DDDLLESEDDYGSEEALSEENVHEASANPQPEDFHGIDIVINHRLKTSLEEGKVLEKTVP 63
Query: 243 FQSVIKGERKF 253
+ K +F
Sbjct: 64 DLNNCKENYEF 74
>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB
prenylation, post-translational modification, protein
binding/protein transport complex; HET: GER GDP PG4;
2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB:
1vg9_A* 1ltx_R*
Length = 650
Score = 38.4 bits (88), Expect = 0.014
Identities = 21/162 (12%), Positives = 48/162 (29%), Gaps = 15/162 (9%)
Query: 55 ITFIECNNDINSMIDISKVADLVLLLIDASFGFEMEIFEFLNICQVHGESTEKSMMEIDG 114
+ + C + + D+ +V + ++ + + ++ + S + D
Sbjct: 502 LVHLTCMSSKTAREDLERVVQKLFTPYTEIEAENEQVEKPRLLWALYFNMRDSSDISRDC 561
Query: 115 IHGAMSGAISSDDSDDENDEDDTSDDDTESGQGSMKKYKEQVVSSQDGRKRRKVMFDDDL 174
+ S D D+ + +Q+ ++D +
Sbjct: 562 YNDLPSNVYVCSGPDSGLGNDNAVKQ--------AETLFQQICPNEDFCPAP-----PNP 608
Query: 175 EDNMDDDDDDDDDDETDDDNDEDNEEESEE--EEENEEDDDE 214
ED + D D + E N E +E N E+ E
Sbjct: 609 EDIVLDGDSSQQEVPESSVTPETNSETPKESTVLGNPEEPSE 650
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 37.0 bits (86), Expect = 0.018
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 431 PLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVI 468
P +P +VA+ G P GKSTL L + L
Sbjct: 17 PRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAE 54
>3fby_A COMP, cartilage oligomeric matrix protein; signature domain, cell
adhesion, disease mutation, dwarfism, EGF-like domain,
glycoprotein, secreted; HET: NAG MAN; 3.15A {Homo
sapiens}
Length = 551
Score = 38.0 bits (88), Expect = 0.019
Identities = 14/72 (19%), Positives = 21/72 (29%), Gaps = 20/72 (27%)
Query: 126 DDSDDENDEDDTSDDDTESGQGSMKKYKEQVVSSQDGRKRRKVMFDDDLEDNMDDDDDDD 185
D D ++ D S Q DG D + D D+
Sbjct: 167 IDGDRIRNQADNCPRVPNSDQ-----------KDSDG---------DGIGDACDNCPQKS 206
Query: 186 DDDETDDDNDED 197
+ D+ D D+D
Sbjct: 207 NPDQADVDHDFV 218
Score = 37.6 bits (87), Expect = 0.023
Identities = 14/75 (18%), Positives = 18/75 (24%), Gaps = 17/75 (22%)
Query: 126 DDSDDENDEDDTSDDDTESGQGSMKKYKEQVVSSQDGRKRRKVMFDDDLEDNMDDDDDDD 185
D D D D + +Q D D D+ D D D
Sbjct: 190 SDGDGIGDACDNCPQKSNP---------DQADVDHDF--------VGDACDSDQDQDGDG 232
Query: 186 DDDETDDDNDEDNEE 200
D D+ N
Sbjct: 233 HQDSRDNCPTVPNSA 247
Score = 37.2 bits (86), Expect = 0.030
Identities = 19/91 (20%), Positives = 28/91 (30%), Gaps = 12/91 (13%)
Query: 126 DDSDDENDEDDTSDDDTESGQGSMKKYKEQVVSSQDGRKRRKVMFDDDLEDNMDDDDDDD 185
D D +E D +Q + +D D+ D D D
Sbjct: 108 ADGDGVPNEKDNCPLVRNP---------DQRNTDEDKWGDACDNCRSQKNDDQKDTDQDG 158
Query: 186 DDDETDDDNDED---NEEESEEEEENEEDDD 213
D DDD D D N+ ++ N + D
Sbjct: 159 RGDACDDDIDGDRIRNQADNCPRVPNSDQKD 189
Score = 36.8 bits (85), Expect = 0.038
Identities = 14/92 (15%), Positives = 29/92 (31%), Gaps = 15/92 (16%)
Query: 124 SSDDSDDENDEDDTSDDDTESGQGSMKKYKEQVVSSQDGRKRRKVMFDDDLEDNMDDDDD 183
+ D D + D + DD G + + D + D D
Sbjct: 148 NDDQKDTDQDGRGDACDDDIDGDR--------IRNQADN-------CPRVPNSDQKDSDG 192
Query: 184 DDDDDETDDDNDEDNEEESEEEEENEEDDDEE 215
D D D+ + N ++++ + + D +
Sbjct: 193 DGIGDACDNCPQKSNPDQADVDHDFVGDACDS 224
Score = 34.5 bits (79), Expect = 0.25
Identities = 17/72 (23%), Positives = 21/72 (29%), Gaps = 17/72 (23%)
Query: 126 DDSDDENDEDDTSDDDTESGQGSMKKYKEQVVSSQDGRKRRKVMFDDDLEDNMDDDDDDD 185
D D D D+ D G S+D +D D D
Sbjct: 213 VDHDFVGDACDSDQDQDGDG----------HQDSRDN-------CPTVPNSAQEDSDHDG 255
Query: 186 DDDETDDDNDED 197
D DDD+D D
Sbjct: 256 QGDACDDDDDND 267
Score = 33.0 bits (75), Expect = 0.65
Identities = 18/76 (23%), Positives = 20/76 (26%), Gaps = 21/76 (27%)
Query: 126 DDSDDENDEDDTSDDDTESGQGSMKKYKEQVVSSQDGRKRRKVMFDDDLEDNMDDDDDDD 185
D D D D S Q D D D DDDDD+D
Sbjct: 228 QDGDGHQDSRDNCPTVPNSAQ-----------EDSDH---------DGQGDACDDDDDND 267
Query: 186 D-DDETDDDNDEDNEE 200
D D+ N
Sbjct: 268 GVPDSRDNCRLVPNPG 283
Score = 32.2 bits (73), Expect = 1.3
Identities = 12/86 (13%), Positives = 16/86 (18%), Gaps = 38/86 (44%)
Query: 113 DGIHGAMSGAISSDDSDDENDEDDTSDDDTESGQGSMKKYKEQVVSSQDGRKRRKVMFDD 172
DG D+ + D+
Sbjct: 65 DGF---------PDEKLRCPERQCRKDNC-----------------------------VT 86
Query: 173 DLEDNMDDDDDDDDDDETDDDNDEDN 198
+D D D D D D D D
Sbjct: 87 VPNSGQEDVDRDGIGDACDPDADGDG 112
Score = 31.1 bits (70), Expect = 2.7
Identities = 18/106 (16%), Positives = 29/106 (27%), Gaps = 17/106 (16%)
Query: 113 DGIHGAMSGAISSDDSDDENDEDDTSDDDTESGQGSMKKYKEQVVSSQDGRKRRKVMFDD 172
DG A I D ++ D + +Q S DG
Sbjct: 157 DGRGDACDDDIDGDRIRNQADNCPRVPNS------------DQKDSDGDGIGDACDNCPQ 204
Query: 173 DLEDNMDDDDDD-----DDDDETDDDNDEDNEEESEEEEENEEDDD 213
+ D D D D D+ D + + ++ N +D
Sbjct: 205 KSNPDQADVDHDFVGDACDSDQDQDGDGHQDSRDNCPTVPNSAQED 250
Score = 31.1 bits (70), Expect = 2.8
Identities = 5/44 (11%), Positives = 9/44 (20%)
Query: 171 DDDLEDNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDE 214
L + + D N + E D+
Sbjct: 343 WVVLNQGREIVQTMNSDPGLAVGYTAFNGVDFEGTFHVNTVTDD 386
Score = 30.7 bits (69), Expect = 3.1
Identities = 13/89 (14%), Positives = 23/89 (25%), Gaps = 24/89 (26%)
Query: 124 SSDDSDDENDEDDTSDDDTESGQGSMKKYKEQVVSSQDGRKRRKVMFDDDLEDNMDDDDD 183
+ D SGQ D D D + D D
Sbjct: 70 EKLRCPERQCRKDNCVTVPNSGQE-----------------------DVD-RDGIGDACD 105
Query: 184 DDDDDETDDDNDEDNEEESEEEEENEEDD 212
D D + + ++ ++ N ++D
Sbjct: 106 PDADGDGVPNEKDNCPLVRNPDQRNTDED 134
Score = 30.3 bits (68), Expect = 4.8
Identities = 9/71 (12%), Positives = 19/71 (26%), Gaps = 14/71 (19%)
Query: 125 SDDSDDENDEDDTSDDDTESGQGSMKKYKEQVVSSQDGRKRRKVMFDDDLEDNMDDDDDD 184
+ + + E Q ++S G + + +D +
Sbjct: 333 PEGDAQIDPNWVVLNQGREI---------VQTMNSDPG-----LAVGYTAFNGVDFEGTF 378
Query: 185 DDDDETDDDND 195
+ TDDD
Sbjct: 379 HVNTVTDDDYA 389
Score = 29.9 bits (67), Expect = 5.8
Identities = 17/76 (22%), Positives = 21/76 (27%), Gaps = 21/76 (27%)
Query: 126 DDSDDENDEDDTSDDDTESGQGSMKKYKEQVVSSQDGRKRRKVMFDDDLEDNMDDDDDDD 185
DD+D D D GQ D D D ++ DD D
Sbjct: 264 DDNDGVPDSRDNCRLVPNPGQE-------------D--------ADRDGVGDVCQDDFDA 302
Query: 186 DDDETDDDNDEDNEEE 201
D D +N E
Sbjct: 303 DKVVDKIDVCPENAEV 318
Score = 29.1 bits (65), Expect = 9.6
Identities = 12/82 (14%), Positives = 17/82 (20%), Gaps = 34/82 (41%)
Query: 121 GAISSDDSD-----DENDEDDTSDDDTESGQGSMKKYKEQVVSSQDGRKRRKVMFDDDLE 175
G + D+D DE D+
Sbjct: 55 GILCGRDTDLDGFPDEKLRCPERQCR-----------------------------KDNCV 85
Query: 176 DNMDDDDDDDDDDETDDDNDED 197
+ +D D D D D D
Sbjct: 86 TVPNSGQEDVDRDGIGDACDPD 107
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal
nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO
MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G*
3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 3bdm_F* 1fnt_G* 2zcy_F*
Length = 288
Score = 37.0 bits (86), Expect = 0.025
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 9/69 (13%)
Query: 156 VVSSQDGRKRRKVMFDDDLED---------NMDDDDDDDDDDETDDDNDEDNEEESEEEE 206
S + K + D L++ N DDD+D+DD D +DE+ +
Sbjct: 218 WCSLSETNGLHKFVKGDLLQEAIDFAQKEINGDDDEDEDDSDNVMSSDDENAPVATNANA 277
Query: 207 ENEEDDDEE 215
+++ D
Sbjct: 278 TTDQEGDIH 286
Score = 31.9 bits (73), Expect = 1.0
Identities = 12/40 (30%), Positives = 16/40 (40%)
Query: 171 DDDLEDNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEE 210
DD ED D D+ DDE N +E + + E
Sbjct: 249 GDDDEDEDDSDNVMSSDDENAPVATNANATTDQEGDIHLE 288
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport
protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo
sapiens}
Length = 349
Score = 36.8 bits (85), Expect = 0.035
Identities = 14/46 (30%), Positives = 19/46 (41%)
Query: 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSV 467
+H Q +P V + GPP GKST I K T+ +
Sbjct: 60 YHREQEQSNKGKPLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKL 105
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for structural
genomics, JCSG; HET: MSE; 1.70A {Chloroflexus
aurantiacus}
Length = 193
Score = 36.1 bits (83), Expect = 0.036
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 10/66 (15%)
Query: 435 PPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIKDSIRDCFVTGKWKASED 494
P ++ V G P GK+TL + L + L+ KD+ ++ G + +
Sbjct: 4 TPALIIVTGHPATGKTTLSQALATGL----------RLPLLSKDAFKEVMFDGLGWSDRE 53
Query: 495 ASELLR 500
S +
Sbjct: 54 WSRRVG 59
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 37.1 bits (85), Expect = 0.037
Identities = 27/172 (15%), Positives = 59/172 (34%), Gaps = 16/172 (9%)
Query: 148 SMKKYKEQVVSSQDGRKRRKVMFDDDLEDNMDDDDDDDDDDETDDDNDEDNEEESEEEEE 207
++K V+S+ K R + N ++ + ++ E + E +++ +
Sbjct: 806 EVEKVATAVLSTTARAKARAKKTKKEKGPNEEEKKKEHEEKEKE-------RETNKKGIK 858
Query: 208 NEEDDDEERKAEKKNSKNEHVQELTAKQKNPKAFTFQSVIKGERKFRSTKPTVVPQPRMS 267
+++DEE K +SK V +T + P+ + S IK +R F + +
Sbjct: 859 ETKENDEEFYKNKYSSKPYKVDNMT--RILPQQSRYISFIKDDR-FVPVRKFKGNNGVVV 915
Query: 268 DKDLAIRHKITSALAGLNSKEEEEEEQEDSAFSDESADDNSSDEDETVEPKT 319
+D + + K+ D D ++P
Sbjct: 916 LRDREPKEPVALIETVRQMKDVNAPLPTPFKVDDN------VDFPSALQPSL 961
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 36.9 bits (85), Expect = 0.039
Identities = 10/89 (11%), Positives = 25/89 (28%), Gaps = 2/89 (2%)
Query: 126 DDSDDENDEDDTSDDDTESGQGSMKKYKEQVV-SSQDGRKRRKVMFDDDLEDNMDDDDDD 184
D+D+ D DD ++ + + ++ + + + + +
Sbjct: 389 FDNDNIPDIDDVCPENNAISETDFRNFQMVPLDPKGTTQIDPNWVIRHQ-GKELVQTANS 447
Query: 185 DDDDETDDDNDEDNEEESEEEEENEEDDD 213
D D + + DDD
Sbjct: 448 DPGIAVGFDEFGSVDFSGTFYVNTDRDDD 476
Score = 34.2 bits (78), Expect = 0.26
Identities = 17/72 (23%), Positives = 24/72 (33%), Gaps = 20/72 (27%)
Query: 126 DDSDDENDEDDTSDDDTESGQGSMKKYKEQVVSSQDGRKRRKVMFDDDLEDNMDDDDDDD 185
D DD +E D + Q DG D + D+ D+
Sbjct: 256 IDGDDVFNERDNCPYVYNTDQRD-----------TDG---------DGVGDHCDNCPLVH 295
Query: 186 DDDETDDDNDED 197
+ D+TD DND
Sbjct: 296 NPDQTDVDNDLV 307
Score = 33.1 bits (75), Expect = 0.69
Identities = 15/76 (19%), Positives = 23/76 (30%), Gaps = 21/76 (27%)
Query: 126 DDSDDENDEDDTSDDDTESGQGSMKKYKEQVVSSQDGRKRRKVMFDDDLEDNMDDDDDDD 185
D D + D + + Q + D D D D DDD+D
Sbjct: 317 IDDDGHQNNQDNCPYISNANQ-----------ADHDR---------DGQGDACDPDDDND 356
Query: 186 D-DDETDDDNDEDNEE 200
D+ D+ N +
Sbjct: 357 GVPDDRDNCRLVFNPD 372
Score = 32.7 bits (74), Expect = 0.97
Identities = 15/80 (18%), Positives = 25/80 (31%), Gaps = 3/80 (3%)
Query: 126 DDSDDENDEDDTSDDDTESGQGSMKKYKEQVVSSQDGRKRRKVMFDDDLEDNMDDDDDDD 185
D DD++D D +D+ Q +D R D D++
Sbjct: 191 DACDDDDDNDGVTDEKDNCQLLF---NPRQADYDKDEVGDRCDNCPYVHNPAQIDTDNNG 247
Query: 186 DDDETDDDNDEDNEEESEEE 205
+ D D D D+ +
Sbjct: 248 EGDACSVDIDGDDVFNERDN 267
Score = 32.3 bits (73), Expect = 0.98
Identities = 18/88 (20%), Positives = 31/88 (35%)
Query: 126 DDSDDENDEDDTSDDDTESGQGSMKKYKEQVVSSQDGRKRRKVMFDDDLEDNMDDDDDDD 185
DD D++ D+ + K++V D D ++N + D
Sbjct: 195 DDDDNDGVTDEKDNCQLLFNPRQADYDKDEVGDRCDNCPYVHNPAQIDTDNNGEGDACSV 254
Query: 186 DDDETDDDNDEDNEEESEEEEENEEDDD 213
D D D N+ DN ++ + D D
Sbjct: 255 DIDGDDVFNERDNCPYVYNTDQRDTDGD 282
Score = 32.3 bits (73), Expect = 1.2
Identities = 18/89 (20%), Positives = 29/89 (32%), Gaps = 15/89 (16%)
Query: 127 DSDDENDEDDTSDDDTESGQGSMKKYKEQVVSSQDGRKRRKVMFDDDLEDNMDDDDDDDD 186
D DD+ND D+ +Q DG D+ DD D+D+
Sbjct: 350 DPDDDNDGVPDDRDNCRLVFNP-----DQEDLDGDG--------RGDICK--DDFDNDNI 394
Query: 187 DDETDDDNDEDNEEESEEEEENEEDDDEE 215
D D + + E++ D +
Sbjct: 395 PDIDDVCPENNAISETDFRNFQMVPLDPK 423
Score = 32.3 bits (73), Expect = 1.2
Identities = 18/88 (20%), Positives = 26/88 (29%), Gaps = 25/88 (28%)
Query: 121 GAISSDDSDDENDEDDTSDDDTESGQGSMKKYKEQVVSSQDGRKRRKVMFDDDLEDNMD- 179
G D+ D +D D + D + + DD ++N D
Sbjct: 283 GVGDHCDNCPLVHNPDQTDVDNDL--------------VGDQCDNNEDIDDDGHQNNQDN 328
Query: 180 ----------DDDDDDDDDETDDDNDED 197
D D D D D D+D D
Sbjct: 329 CPYISNANQADHDRDGQGDACDPDDDND 356
Score = 32.3 bits (73), Expect = 1.2
Identities = 17/88 (19%), Positives = 26/88 (29%), Gaps = 23/88 (26%)
Query: 126 DDSDDENDEDDTSDDDTESGQGSMKKYKEQVVSSQDGRKRRKVMFDDDLEDNMDDDDDDD 185
D D D D Q D+DL + D+++D
Sbjct: 279 TDGDGVGDHCDNCPLVHNPDQTD---------------------VDNDLVGDQCDNNEDI 317
Query: 186 DDDETDDDNDEDNEEESEEEEENEEDDD 213
DDD ++ DN + + D D
Sbjct: 318 DDDGHQNNQ--DNCPYISNANQADHDRD 343
Score = 31.5 bits (71), Expect = 1.8
Identities = 18/79 (22%), Positives = 26/79 (32%), Gaps = 27/79 (34%)
Query: 125 SDDSDDENDEDDTSDDDTESGQGSMKKYKEQVVSSQDGRKRRKVMFDDDLEDNMDDD--- 181
+D D+ D ++ DDD ++QD + D D
Sbjct: 304 NDLVGDQCDNNEDIDDDG-------------HQNNQD------NCPYISNANQADHDRDG 344
Query: 182 -----DDDDDDDETDDDND 195
D DDD+D DD D
Sbjct: 345 QGDACDPDDDNDGVPDDRD 363
Score = 30.8 bits (69), Expect = 3.5
Identities = 12/90 (13%), Positives = 24/90 (26%), Gaps = 2/90 (2%)
Query: 126 DDSDDENDEDDTSDDDTESGQGSMKKYK--EQVVSSQDGRKRRKVMFDDDLEDNMDDDDD 183
+ D+ + G S YK Q + DG + D +
Sbjct: 103 NPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAGDGLICGEDSDLDGWPNLNLVCAT 162
Query: 184 DDDDDETDDDNDEDNEEESEEEEENEEDDD 213
+ D+ E+ +++ D
Sbjct: 163 NATYHCIKDNCPHLPNSGQEDFDKDGIGDA 192
Score = 30.8 bits (69), Expect = 3.8
Identities = 11/99 (11%), Positives = 22/99 (22%), Gaps = 20/99 (20%)
Query: 97 ICQVHGESTEKSMMEIDGIHGAMSGAISSDDSDDENDEDDTSDDDTESGQGSMKKYKEQV 156
+C + +E + G D + + S G
Sbjct: 400 VCPENNAISETDFRNFQMVPLDPKGTTQIDPNWVIRHQGKELVQTANSDPG--------- 450
Query: 157 VSSQDGRKRRKVMFDDDLEDNMDDDDDDDDDDETDDDND 195
+ D ++D + + DDD
Sbjct: 451 -----------IAVGFDEFGSVDFSGTFYVNTDRDDDYA 478
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET:
MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10
PDB: 2qm7_A*
Length = 337
Score = 36.7 bits (85), Expect = 0.043
Identities = 14/37 (37%), Positives = 15/37 (40%)
Query: 431 PLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSV 467
P I V + G P VGKST I L T V
Sbjct: 50 PQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKV 86
>1nvp_C Transcription initiation factor IIA beta chain; transcription
regulation, DNA, complex, transcription/DNA complex;
2.10A {Homo sapiens} SCOP: b.56.1.1
Length = 76
Score = 33.4 bits (76), Expect = 0.047
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 182 DDDDDDDETDDDNDEDNEEESEEEEENEEDD 212
+D E + N ED+ + E +E + ++
Sbjct: 3 GAEDGQVEEEPLNSEDDVSDEEGQELFDTEN 33
Score = 33.0 bits (75), Expect = 0.057
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 171 DDDLEDNMDDDDDDDDDDETDDDNDEDN 198
D +E+ + +DD D+E + D +N
Sbjct: 6 DGQVEEEPLNSEDDVSDEEGQELFDTEN 33
Score = 32.2 bits (73), Expect = 0.11
Identities = 5/30 (16%), Positives = 14/30 (46%)
Query: 179 DDDDDDDDDDETDDDNDEDNEEESEEEEEN 208
+D +++ + ++D +EE E +
Sbjct: 3 GAEDGQVEEEPLNSEDDVSDEEGQELFDTE 32
Score = 32.2 bits (73), Expect = 0.13
Identities = 6/32 (18%), Positives = 15/32 (46%)
Query: 177 NMDDDDDDDDDDETDDDNDEDNEEESEEEEEN 208
+ +D +++ +D+ D E + + EN
Sbjct: 2 SGAEDGQVEEEPLNSEDDVSDEEGQELFDTEN 33
Score = 31.9 bits (72), Expect = 0.19
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 175 EDNMDDDDDDDDDDETDDDNDEDNEEESEEE 205
D +++ + DD +DE+ +E + E
Sbjct: 2 SGAEDGQVEEEPLNSEDDVSDEEGQELFDTE 32
Score = 30.3 bits (68), Expect = 0.62
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 180 DDDDDDDDDETDDDNDEDNEEESEEEEENE 209
+D ++E + D+ ++EE +E + E
Sbjct: 3 GAEDGQVEEEPLNSEDDVSDEEGQELFDTE 32
Score = 28.8 bits (64), Expect = 1.9
Identities = 4/30 (13%), Positives = 14/30 (46%)
Query: 173 DLEDNMDDDDDDDDDDETDDDNDEDNEEES 202
ED +++ + +D+ D+ ++ +
Sbjct: 3 GAEDGQVEEEPLNSEDDVSDEEGQELFDTE 32
Score = 28.8 bits (64), Expect = 2.1
Identities = 5/30 (16%), Positives = 16/30 (53%)
Query: 172 DDLEDNMDDDDDDDDDDETDDDNDEDNEEE 201
+ ++++ + +DD +D++ E + E
Sbjct: 3 GAEDGQVEEEPLNSEDDVSDEEGQELFDTE 32
Score = 28.8 bits (64), Expect = 2.2
Identities = 5/28 (17%), Positives = 11/28 (39%)
Query: 171 DDDLEDNMDDDDDDDDDDETDDDNDEDN 198
+D + + +DD DE + +
Sbjct: 5 EDGQVEEEPLNSEDDVSDEEGQELFDTE 32
Score = 28.8 bits (64), Expect = 2.3
Identities = 3/30 (10%), Positives = 12/30 (40%)
Query: 171 DDDLEDNMDDDDDDDDDDETDDDNDEDNEE 200
+ ++ + +DD ++ + + E
Sbjct: 3 GAEDGQVEEEPLNSEDDVSDEEGQELFDTE 32
Score = 27.6 bits (61), Expect = 5.0
Identities = 5/26 (19%), Positives = 14/26 (53%)
Query: 169 MFDDDLEDNMDDDDDDDDDDETDDDN 194
+++ ++ DD D++ + D +N
Sbjct: 8 QVEEEPLNSEDDVSDEEGQELFDTEN 33
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD,
transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP:
c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Length = 252
Score = 36.0 bits (83), Expect = 0.051
Identities = 11/64 (17%), Positives = 26/64 (40%)
Query: 416 DIQAKKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLI 475
+ Q + P P ++ V G GKS++ +++ + + + V ++
Sbjct: 2 GMAGDSEQTLQNHQQPNGGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVIL 61
Query: 476 IKDS 479
+DS
Sbjct: 62 SQDS 65
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 36.6 bits (84), Expect = 0.053
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 402 QSVIKGERKFRRKEDIQAKKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLI 457
Q ++ R +IQ + + ++ + VAV G GKS+ I L
Sbjct: 36 QEILNLIELRMRAGNIQLTNSAISDALKE-IDSSVLNVAVTGETGSGKSSFINTLR 90
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 35.7 bits (81), Expect = 0.056
Identities = 19/166 (11%), Positives = 50/166 (30%), Gaps = 7/166 (4%)
Query: 179 DDDDDDDDDDETDDDNDEDNEEESEEEEENE----EDDDEERKAEKKNSKNEHVQELTAK 234
D + + +ED ++E+E E+D+ +
Sbjct: 4 DFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSQGGLAQPGPASGA 63
Query: 235 QKNPKAFTFQSVIKGERKFRSTKPTVVPQPRMSDKDLAIRHKITSALAGLNSKEEEEEEQ 294
++ A V + + R++ + +IR L + +
Sbjct: 64 SEDMGATVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASKVM 123
Query: 295 EDSAFS--DESADDNSSDEDETVEPKTHKDSKNPEEDTGLNWKSDL 338
E + ++ + + E VE K +++ ++ +D+
Sbjct: 124 EQEWREKAKKDLEEWNQRQSEQVE-KNKINNRIADKAFYQQPDADI 168
Score = 30.7 bits (68), Expect = 2.3
Identities = 15/106 (14%), Positives = 37/106 (34%), Gaps = 18/106 (16%)
Query: 505 DDDEELFGDFEDLETGEKHSGDKSGGG--------------SGGVSGGGSGDDKPKTRAE 550
+++E FG + G G SG + G + G + + +
Sbjct: 38 IENDEGFGAPAGSQGGLAQPGPASGASEDMGATVNGDVFQEANGPADGYAAIAQADRLTQ 97
Query: 551 LMEKKRKLKEQFDAEYDDKDGGGNTYYDDLKTQATRQAELNRQQFH 596
E RK +E+ + D ++ + +A+ + ++++
Sbjct: 98 EPESIRKWREEQRKRLQELDAASK----VMEQEWREKAKKDLEEWN 139
Score = 28.7 bits (63), Expect = 9.4
Identities = 18/111 (16%), Positives = 34/111 (30%), Gaps = 18/111 (16%)
Query: 129 DDENDEDDTSDDDTESGQGSMKKYKEQVVSSQDGRKRRKVMFDDDLEDNMDDDDDDDDDD 188
ENDE + ++ G Q + +D+ ++ D + +
Sbjct: 37 GIENDEGFGAPAGSQGGL-------AQPGPASGA--------SEDMGATVNGDVFQEANG 81
Query: 189 ETDDDNDEDNEEESEEEEENEEDDDEERK---AEKKNSKNEHVQELTAKQK 236
D + +E E+ EE++ E + QE K K
Sbjct: 82 PADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAK 132
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 36.5 bits (83), Expect = 0.058
Identities = 11/142 (7%), Positives = 35/142 (24%), Gaps = 14/142 (9%)
Query: 189 ETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSKNEHVQELTAKQKNPKAFTFQSVIK 248
E+ + EE E ++ + + + + ++ + +
Sbjct: 8 HGHHHQLENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEG 67
Query: 249 GERKFRSTKPTVVPQPRMSDKDLAIRHKITSALAGLNSKEEEEEEQEDSAFSDESADDNS 308
+ P + + + EE+ ++ + +
Sbjct: 68 VATASETASPASNEAATTETAE--------------AASAAKPEEKASEVVAETPSAEAK 113
Query: 309 SDEDETVEPKTHKDSKNPEEDT 330
D+ E K ++ E
Sbjct: 114 PKSDKETEAKPEATNQGDESKP 135
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T*
1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S*
3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z
1pnu_T 1pny_T 1vor_W ...
Length = 237
Score = 35.5 bits (82), Expect = 0.060
Identities = 7/52 (13%), Positives = 16/52 (30%)
Query: 175 EDNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSKNE 226
E + + E+ E E + + E+ E + + +E
Sbjct: 180 ELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSE 231
Score = 35.5 bits (82), Expect = 0.071
Identities = 6/52 (11%), Positives = 13/52 (25%)
Query: 175 EDNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSKNE 226
+ + ++E E E + EE E + +
Sbjct: 181 LEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSED 232
Score = 35.1 bits (81), Expect = 0.097
Identities = 4/56 (7%), Positives = 19/56 (33%)
Query: 171 DDDLEDNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSKNE 226
+ + +++ + E ++ EE E ++ + +++ +
Sbjct: 181 LEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDNSDA 236
Score = 28.9 bits (65), Expect = 9.4
Identities = 11/42 (26%), Positives = 14/42 (33%)
Query: 199 EEESEEEEENEEDDDEERKAEKKNSKNEHVQELTAKQKNPKA 240
EE E E + + E E V E A + KA
Sbjct: 178 AEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKA 219
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem
G-domains, ligand binding protein; HET: GDP; 1.90A
{Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Length = 439
Score = 35.9 bits (84), Expect = 0.066
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 425 PQVDRTPLEPPPIVVAVVGPPQVGKSTLI 453
++ P I VA+VG P VGKSTL
Sbjct: 169 LDLESKPEITDAIKVAIVGRPNVGKSTLF 197
Score = 33.6 bits (78), Expect = 0.39
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 438 VVAVVGPPQVGKSTL 452
V +VG P VGKSTL
Sbjct: 3 TVLIVGRPNVGKSTL 17
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein
structure initiative, NEW YORK SGX research for
structural genomics; 1.80A {Escherichia coli} SCOP:
c.37.1.10
Length = 341
Score = 35.9 bits (83), Expect = 0.069
Identities = 10/37 (27%), Positives = 14/37 (37%)
Query: 431 PLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSV 467
P + + V G P GKST + + L V
Sbjct: 51 PYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKV 87
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 35.1 bits (80), Expect = 0.070
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 8/54 (14%)
Query: 196 EDNEEESEEEEENEEDDDEERKAEKKNSKNE---HVQELTAKQK-----NPKAF 241
E+ + +E + + ++E + + K E E K K KAF
Sbjct: 92 EEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAF 145
Score = 34.7 bits (79), Expect = 0.084
Identities = 12/72 (16%), Positives = 27/72 (37%), Gaps = 4/72 (5%)
Query: 544 KPKTRAELMEKKRKLKEQFDAEYDDKDGGGNTYYDDLKTQATRQ-AELNRQQFHDLD--- 599
+ + E RK +E+ + D + + +A + E N++Q ++
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK 135
Query: 600 DNARVELEGFRA 611
N R+ + F
Sbjct: 136 INNRIADKAFYQ 147
Score = 34.4 bits (78), Expect = 0.14
Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 32/95 (33%)
Query: 478 DSIRDCFVTGKWKASEDASELLRLDDMDDDEELFGDFEDLETGEKHSGDKSGGGSGGVSG 537
+SIR KW+ + RL ++D ++ + E EK D
Sbjct: 85 ESIR------KWREEQRK----RLQELDAASKV----MEQEWREKAKKDL---------- 120
Query: 538 GGSGDDKPKTRAELMEKK----RKLKEQFDAEYDD 568
++ + ++E +EK R + F + D
Sbjct: 121 ----EEWNQRQSEQVEKNKINNRIADKAFYQQPDA 151
Score = 32.1 bits (72), Expect = 0.78
Identities = 12/75 (16%), Positives = 30/75 (40%), Gaps = 11/75 (14%)
Query: 148 SMKKYKEQVVSSQDGRKRRKVMFDDDLEDNMDDDDDDDDDDETDDDNDEDNEEESEEEEE 207
S++K++E+ Q R + D M+ + + + ++ N +E+ + +
Sbjct: 86 SIRKWREE----QRKRLQEL----DAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKIN 137
Query: 208 NEEDDDE---ERKAE 219
N D + A+
Sbjct: 138 NRIADKAFYQQPDAD 152
Score = 30.1 bits (67), Expect = 2.6
Identities = 10/74 (13%), Positives = 26/74 (35%), Gaps = 20/74 (27%)
Query: 284 LNSKEEEEEEQEDS--AFSDESADDNSSDEDETVEPKTHKDSKNPEEDTGLNWKSDLAQK 341
L + + E + + ++ + + E VE K +++ ++
Sbjct: 98 LQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVE-KNKINNRIADK------------- 143
Query: 342 AASAFL-ERQANIV 354
AF + A+I+
Sbjct: 144 ---AFYQQPDADII 154
Score = 29.4 bits (65), Expect = 6.0
Identities = 9/67 (13%), Positives = 22/67 (32%), Gaps = 10/67 (14%)
Query: 199 EEESEEE----EENE---EDDDEERKAEKKNSKNEHVQELT---AKQKNPKAFTFQSVIK 248
+E E EE ++ D K ++ + + ++L +Q +
Sbjct: 81 TQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRI 140
Query: 249 GERKFRS 255
++ F
Sbjct: 141 ADKAFYQ 147
Score = 28.6 bits (63), Expect = 8.3
Identities = 13/88 (14%), Positives = 28/88 (31%), Gaps = 22/88 (25%)
Query: 896 PKALQKELPYHMKPKYKSKETPKPQRVAVIHSEREQKVASLMKMLRT-------NYSEKN 948
L +E P ++ K +E + +R+ + + + + + SE+
Sbjct: 77 ADRLTQE-PESIR---KWREEQR-KRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQV 131
Query: 949 SKEKQAMKARMVALKLRAKAAEEAKQQR 976
K K + A + QQ
Sbjct: 132 EKNKINNRI----------ADKAFYQQP 149
>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein
complex, RNA-RNA complex, PROT complex, peptidyl
transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS;
2.20A {Haloarcula marismortui} SCOP: j.84.1.1 PDB:
1k73_I* 1k8a_I* 1k9m_I* 1kc8_I* 1kd1_I* 1kqs_G* 1m1k_I*
1m90_I* 1n8r_I* 1nji_I* 1q7y_I* 1q81_I* 1q82_I* 1q86_I*
1qvf_G 1qvg_G 1s72_G* 1vq4_G* 1vq5_G* 1vq6_G* ...
Length = 348
Score = 35.6 bits (81), Expect = 0.080
Identities = 26/170 (15%), Positives = 58/170 (34%), Gaps = 15/170 (8%)
Query: 48 QEFEIEPITFIECNNDINSMIDISKVADLVLLLIDASFGFEMEIFEFLNICQVHGESTEK 107
E IEP + + + + +L L + + + N+ T
Sbjct: 180 NELGIEPKEVGLDLRAVFADGVLFEPEELELDIDEYRSDIQAAAGRAFNLSVNADYPTAT 239
Query: 108 SMME--IDGIHGAMSGAISSDDSDDENDEDDTSDDDTESGQGSMKKYKEQVVSSQDGRKR 165
+ A S A+ + D E D S D + + +
Sbjct: 240 TAPTMLQSDRGNAKSLALQAAIEDPEVVPDLVSKADAQV-------------RALASQID 286
Query: 166 RKVMFDDDLEDNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEE 215
+ ++L+ D ++ D+ DDD +++ ++++ E +DDD++
Sbjct: 287 DEEALPEELQGVEADVATEEPTDDQDDDTASEDDADADDAAEEADDDDDD 336
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium
tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A*
Length = 355
Score = 35.6 bits (82), Expect = 0.096
Identities = 12/37 (32%), Positives = 15/37 (40%)
Query: 431 PLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSV 467
P V + G P VGKST I L + + V
Sbjct: 74 PDSGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRV 110
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 35.4 bits (82), Expect = 0.12
Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 18/85 (21%)
Query: 438 VVAVVGPPQVGKSTLIRCL----------------IKNFTKTPLSVIKGPVTLIIKDSIR 481
++ ++G GK+TLI+ L + + G V + IR
Sbjct: 380 ILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIR 439
Query: 482 DCFVTGKWKASEDASELLRLDDMDD 506
F+ +++ D + LR+DD+ D
Sbjct: 440 GQFLNPQFQ--TDVVKPLRIDDIID 462
>3pow_A Calreticulin; legume lectin fold, CNX/CRT family, multi-functional,
carboh binding, peptide binding, multi-compartmental,
chaperone; 1.55A {Homo sapiens} PDB: 3pos_A 3o0w_A*
3o0v_A* 3o0x_A*
Length = 265
Score = 34.7 bits (79), Expect = 0.15
Identities = 8/55 (14%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 168 VMFDDDLEDNMDDDDD---DDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAE 219
+ D + D+ +D+ ++ +E E++ ++ DEE++ +
Sbjct: 211 LGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETWGVTKAAEKQMKDKQDEEQRLK 265
Score = 30.9 bits (69), Expect = 2.3
Identities = 9/57 (15%), Positives = 19/57 (33%), Gaps = 2/57 (3%)
Query: 172 DDLEDNMDDDDDDDDDDETDDDNDEDNEEESEE--EEENEEDDDEERKAEKKNSKNE 226
D+ D D+ ++E +EE E E++ + K + +
Sbjct: 206 DNFGVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETWGVTKAAEKQMKDKQDEEQ 262
Score = 30.5 bits (68), Expect = 2.8
Identities = 6/50 (12%), Positives = 19/50 (38%)
Query: 171 DDDLEDNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEK 220
+ D+ +D+ ++ + ++ E+ +D +E + K
Sbjct: 216 WQVKSGTIFDNFLITNDEAYAEEFGNETWGVTKAAEKQMKDKQDEEQRLK 265
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed
alpha-beta fold, elongated beta-sheet, walker A motif,
P-loop structural motif; 1.90A {Escherichia coli} SCOP:
c.37.1.10 PDB: 1p9n_A
Length = 174
Score = 33.7 bits (76), Expect = 0.17
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 438 VVAVVGPPQVGKSTLIRCLIKNFTKTPLSVI 468
++A GK+TL++ LI +
Sbjct: 8 LLAFAAWSGTGKTTLLKKLIPALCARGIRPG 38
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics,
midwest center for structura genomics, protein structure
initiative; 2.50A {Fusobacterium nucleatum subsp}
Length = 164
Score = 33.7 bits (77), Expect = 0.17
Identities = 16/81 (19%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 163 RKRRKVMFDDDLEDNMDDDDDDDDDDETDDDNDEDNEEESEEEE--ENEEDDDEERKAEK 220
++ ++ ++ L+ N +D DDE + N+ + E + EE EE ++ ++ +E
Sbjct: 49 NTQKHMVLNEALKTNAILEDSAYFDDEGHNINNYKSSESNPEEAYLLKEEIEEFKKFSEN 108
Query: 221 KNSKNE------HVQELTAKQ 235
SK E ++ + ++
Sbjct: 109 NFSKFEKEVLTYLIRGYSYRE 129
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear
import, heat motif, NLS-binding; 2.30A {Homo sapiens}
SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A
2qna_A
Length = 876
Score = 35.2 bits (80), Expect = 0.17
Identities = 21/146 (14%), Positives = 48/146 (32%), Gaps = 13/146 (8%)
Query: 55 ITFIECNNDINSMIDISKVADLVLLLIDASFGFEMEIFEFLN-ICQVHGESTEKSMMEID 113
+ F + N D S + + + + L I ++ + E M
Sbjct: 202 LEFTKANFDKESERHFI-MQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPA- 259
Query: 114 GIHGAMSGAISSDDSD--------DENDEDDTSDDDTESGQGSMKKYKEQVVSSQDGRKR 165
+ A+ SD + N D+ D E+ + + + + S +
Sbjct: 260 -LFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGA 318
Query: 166 RKVMFDDDLEDNMDDDDDDDDDDETD 191
+ + + + D++DDDD+ +
Sbjct: 319 LQYLVPILTQT-LTKQDENDDDDDWN 343
>1nh2_C Transcription initiation factor IIA large chain; transcription/DNA;
HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP:
b.56.1.1 PDB: 1ytf_C*
Length = 79
Score = 31.9 bits (72), Expect = 0.17
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 171 DDDLEDNMDDDDDDDDDDETDDDNDEDN 198
D++ +DD DDD E ++D ++N
Sbjct: 8 TDEVGSELDDSDDDYLISEGEEDGPDEN 35
Score = 31.5 bits (71), Expect = 0.23
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 175 EDNMDDDDDDDDDDETDDDNDEDNEEE 201
D + + DD DDD + +ED +E
Sbjct: 8 TDEVGSELDDSDDDYLISEGEEDGPDE 34
Score = 31.1 bits (70), Expect = 0.28
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 179 DDDDDDDDDDETDDDNDEDNEEESEEEEENEEDD 212
D D+ ++ D+ +D+ SE EE+ +++
Sbjct: 2 SSALLDTDEVGSELDDSDDDYLISEGEEDGPDEN 35
Score = 30.0 bits (67), Expect = 0.82
Identities = 8/34 (23%), Positives = 16/34 (47%)
Query: 180 DDDDDDDDDETDDDNDEDNEEESEEEEENEEDDD 213
D D+ + +D D++ E EE+ D++
Sbjct: 2 SSALLDTDEVGSELDDSDDDYLISEGEEDGPDEN 35
Score = 28.8 bits (64), Expect = 2.4
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 171 DDDLEDNMDDDDDDDDDDETDDDNDEDNEE 200
D ++ + DD DDD + ++ +E
Sbjct: 5 LLDTDEVGSELDDSDDDYLISEGEEDGPDE 34
Score = 28.4 bits (63), Expect = 2.5
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 178 MDDDDDDDDDDETDDDNDEDNEEESEEEE 206
+D D+ + D++DDD EE +E
Sbjct: 6 LDTDEVGSELDDSDDDYLISEGEEDGPDE 34
Score = 28.0 bits (62), Expect = 4.0
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 176 DNMDDDDDDDDDDETDDDNDEDNEEESEEEEEN 208
+ D D+ + D D+D E E+ +
Sbjct: 2 SSALLDTDEVGSELDDSDDDYLISEGEEDGPDE 34
Score = 27.6 bits (61), Expect = 6.2
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 173 DLEDNMDDDDDDDDDDETDDDNDEDNEEESEEE 205
D+ + DD DD + EE+ +E
Sbjct: 2 SSALLDTDEVGSELDDSDDDYLISEGEEDGPDE 34
Score = 27.3 bits (60), Expect = 7.1
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 121 GAISSDDSDDENDEDDTSDDDTESGQGSMKKYKEQVVSSQ 160
G+ + D+D+ E D SDDD +G E ++
Sbjct: 1 GSSALLDTDEVGSELDDSDDDYLISEGEEDGPDENLMLCL 40
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A
{Geobacillus kaustophilus}
Length = 213
Score = 33.9 bits (78), Expect = 0.17
Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 2/75 (2%)
Query: 160 QDGRKRRKVMFDDDLEDNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAE 219
+ G K+ D + +++ ++ EE EE + AE
Sbjct: 2 EQGEKQVMEQATYDEPEREQPIEEEAAPQPEEESGGVPLEEAGGEEAAEPAEKAPT--AE 59
Query: 220 KKNSKNEHVQELTAK 234
+ + + EL AK
Sbjct: 60 ELAAAKAQIAELEAK 74
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP,
signaling protein; HET: GNP; 2.00A {Thermotoga maritima}
PDB: 3cnn_A* 3cno_A*
Length = 262
Score = 34.2 bits (79), Expect = 0.18
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 434 PPPIVVAVVGPPQVGKSTLIRCLIK 458
V +VG P GKST+I L
Sbjct: 97 DRLARVLIVGVPNTGKSTIINKLKG 121
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural
genomics; HET: GDP; 1.96A {Thermus thermophilus}
Length = 161
Score = 33.6 bits (78), Expect = 0.18
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 438 VVAVVGPPQVGKSTL 452
V +VG P VGKS+L
Sbjct: 3 KVVIVGRPNVGKSSL 17
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 33.5 bits (76), Expect = 0.19
Identities = 16/92 (17%), Positives = 29/92 (31%), Gaps = 10/92 (10%)
Query: 438 VVAVVGPPQVGKSTLIRCLIKNFTKTPLSV--IK------GPVTLIIKDSIR--DCFVTG 487
V VVG GK+TL+ + + V +K P DS+R
Sbjct: 6 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPARPEGVDSVRHERAGAVA 65
Query: 488 KWKASEDASELLRLDDMDDDEELFGDFEDLET 519
+ +L + +++ + L
Sbjct: 66 TAVEGDGLLQLHLRRPLWRLDDVLALYAPLRL 97
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 34.1 bits (79), Expect = 0.19
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 438 VVAVVGPPQVGKSTLIRCL 456
VV V+GP GKST +RCL
Sbjct: 52 VVVVIGPSGSGKSTFLRCL 70
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 34.3 bits (78), Expect = 0.21
Identities = 12/129 (9%), Positives = 27/129 (20%), Gaps = 23/129 (17%)
Query: 338 LAQKAASAFLERQANIVNLAKYVYGDMEDVSVTMEGDEAPNKKVHRKRQAELTAKQKNPK 397
L Q + + N+ + V + + ++ +N
Sbjct: 44 LCQIINEKYHTFLSEHPNVIEVNDRLKPMV--------NLVDSLKTLQPNKVAEMIENQG 95
Query: 398 AFTFQSVIKGERKFRRKEDIQAKKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLI 457
F + K + + AVV + I +
Sbjct: 96 LF--------KDHVEDVNFQPVKYSALTSNNE-------ECTAVVARGGTANAIRIAAVD 140
Query: 458 KNFTKTPLS 466
L+
Sbjct: 141 NPVNVNKLA 149
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces
cerevisiae}
Length = 1030
Score = 34.5 bits (79), Expect = 0.25
Identities = 12/62 (19%), Positives = 27/62 (43%)
Query: 502 DDMDDDEELFGDFEDLETGEKHSGDKSGGGSGGVSGGGSGDDKPKTRAELMEKKRKLKEQ 561
D +D+ ++FGD D + + ++ G+ D+ + +KK L++
Sbjct: 11 DKIDEMYDIFGDGHDYDWALEIENEELENGNDNNEAEEEEIDEETGAIKSTKKKISLQDI 70
Query: 562 FD 563
+D
Sbjct: 71 YD 72
Score = 31.8 bits (72), Expect = 1.6
Identities = 21/127 (16%), Positives = 45/127 (35%), Gaps = 23/127 (18%)
Query: 177 NMDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSKNEHVQELTAKQK 236
+ D D+ D D +D D E E EE +D+ E + E+ + + ++ K
Sbjct: 7 GLSSDKIDEMYDIFGDGHDYDWALEIENEELENGNDNNEAEEEEIDEETGAIKSTKKKIS 66
Query: 237 NPKAFTFQSVIKGERKFRSTKPTVVPQPRMSDKDLAIRH--------KITSALAGLNSKE 288
+ + + M++ D+ IR ++ + + +
Sbjct: 67 LQDIY---------------DLEDLKKNLMTEGDMKIRKTDIPERYQELRAGITDYGNMS 111
Query: 289 EEEEEQE 295
E++E E
Sbjct: 112 SEDQELE 118
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB);
structural genomics, PSI, protein structure initiative;
2.10A {Archaeoglobus fulgidus}
Length = 171
Score = 33.1 bits (75), Expect = 0.27
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 436 PIVVAVVGPPQVGKSTLIRCLIKNFTK 462
+++++VG GK+TLI ++ +
Sbjct: 2 SLILSIVGTSDSGKTTLITRMMPILRE 28
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein
transport importin, transportin, transport protein;
2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A
2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Length = 852
Score = 34.4 bits (78), Expect = 0.27
Identities = 16/146 (10%), Positives = 40/146 (27%), Gaps = 13/146 (8%)
Query: 55 ITFIECNNDINSMIDISKVADLVLLLIDASFGFEMEIFEFLN-ICQVHGESTEKSMMEID 113
+ + + +L L D + L + +V + M
Sbjct: 201 FIISRTQALMLHIDSF--IENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM---H 255
Query: 114 GIHGAMSGAISSDDSD--DENDEDDTSDDDTESGQGSMKKYKEQVVSSQDGRKRRKVMFD 171
I M D + E E + + + + ++ +++ M
Sbjct: 256 NIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLI-----PVLVNGMKY 310
Query: 172 DDLEDNMDDDDDDDDDDETDDDNDED 197
D++ + D + D +D +
Sbjct: 311 SDIDIILLKGDVEGGSGGDDTISDWN 336
>3ay5_A Cyclin-D1-binding protein 1; dominant-negative helix-loop-helix
transcriptional regulator cycle; 2.50A {Homo sapiens}
Length = 360
Score = 34.1 bits (77), Expect = 0.27
Identities = 5/37 (13%), Positives = 16/37 (43%)
Query: 171 DDDLEDNMDDDDDDDDDDETDDDNDEDNEEESEEEEE 207
+ ++ D+ + +D+ + SE+++E
Sbjct: 203 GLLNDTEENNSDNHNHEDDVLGFPSNQDLYWSEDDQE 239
Score = 32.6 bits (73), Expect = 0.82
Identities = 8/79 (10%), Positives = 25/79 (31%)
Query: 164 KRRKVMFDDDLEDNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNS 223
D ++D ++ + ++ + D EE + + +E+D +
Sbjct: 174 LLMLTKNVDFVKDAHEEMEQAVEESDPYSGLLNDTEENNSDNHNHEDDVLGFPSNQDLYW 233
Query: 224 KNEHVQELTAKQKNPKAFT 242
+ + + +A
Sbjct: 234 SEDDQELIIPCLALVRASK 252
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex,
transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Length = 460
Score = 34.0 bits (77), Expect = 0.30
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 422 HHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKT 463
H + + R P VV +VG Q GK++L R L K
Sbjct: 125 HFMLEKIRMSNFEGPRVV-IVGGSQTGKTSLSRTLCSYALKF 165
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 33.6 bits (78), Expect = 0.32
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 439 VAVVGPPQVGKSTLIRCLI 457
+A+VG P VGKSTL+ L+
Sbjct: 11 IAIVGRPNVGKSTLLNKLL 29
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 33.3 bits (77), Expect = 0.33
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 438 VVAVVGPPQVGKSTLIRCL 456
V++++G GKST +RC+
Sbjct: 34 VISIIGSSGSGKSTFLRCI 52
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1
a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F*
2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Length = 423
Score = 33.7 bits (77), Expect = 0.33
Identities = 30/233 (12%), Positives = 69/233 (29%), Gaps = 47/233 (20%)
Query: 129 DDENDEDDTSDDDTESGQGSMKKYKEQVVSSQDGRKRRKVMFDDDLEDNMDDDDDDDDDD 188
+ + + ++ E ++ + D DLED +DD D
Sbjct: 12 QEAQETEVLVQEEAE-----------ELPEFPE------GEPDPDLEDPDLALEDDLLDL 54
Query: 189 ETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSKNEHVQELTAKQKNPKAFTFQSVIK 248
+ + + EEE + D R+ + + V LT +++ ++
Sbjct: 55 PEEGEGLDLEEEEEDLPIPKISTSDPVRQYLHEIGQ---VPLLTLEEE----------VE 101
Query: 249 GERKFRSTKPTVVPQPRMSDKDLAIRHKITSALAGLNSKEEEEEEQEDSAFSDESADDNS 308
RK + ++ D + ++ + + +
Sbjct: 102 LARKVEEGMEAIKKLSEITGLDPDLIREV--------VRAKILGSARVRHIPGLKETLDP 153
Query: 309 SDEDETVEPKTHKDSKNPEEDTGLNWKSDLAQKAASAFLERQAN---IVNLAK 358
+E + P+E + + A +E AN +V++AK
Sbjct: 154 KTVEEIDQK----LKSLPKEHKRYLHIAREGEAARQHLIE--ANLRLVVSIAK 200
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA,
30S ribosome ASSE GTP-binding, nucleotide-binding; HET:
GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 33.6 bits (78), Expect = 0.35
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 439 VAVVGPPQVGKSTLIRCLI 457
VA+VG P VGKSTL+ L+
Sbjct: 13 VAIVGKPNVGKSTLLNNLL 31
>3o4z_A Telomere length regulation protein TEL2; heat like helical repeats,
protein binding; 3.10A {Saccharomyces cerevisiae}
Length = 647
Score = 34.0 bits (77), Expect = 0.35
Identities = 16/143 (11%), Positives = 46/143 (32%), Gaps = 21/143 (14%)
Query: 158 SSQDGRKRRKVMF-DDDLEDNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEER 216
S + R + MF L + D + + + + +++ D +
Sbjct: 334 GSNEREARERAMFIAKLLSGGHLKYESDFKINIPNVKFESN---------SDDKIIDFQS 384
Query: 217 KAEKKNSKNEHVQELTA---KQKNPKAFTFQSVIKGERKFRSTKPTVVPQPRMSDKDLA- 272
+ + +++L K + ++K ++ Q ++
Sbjct: 385 LKREIVKRIVFLKDLMKEYEKTGESRKAPLIPLLK-------QTVKLIRQKADFQLEVGY 437
Query: 273 IRHKITSALAGLNSKEEEEEEQE 295
I S++ LN++ +E ++
Sbjct: 438 YAQGILSSIVCLNNEFDEPLFEQ 460
Score = 30.9 bits (69), Expect = 3.2
Identities = 15/148 (10%), Positives = 37/148 (25%), Gaps = 28/148 (18%)
Query: 263 QPRMSDKDLAIRHK--ITSALAGLNSKEEEEEEQEDSAFSDESADDNSSDEDETVEPK-- 318
+ + R + + L + E + + + ++ + D +
Sbjct: 330 TKHLGSNEREARERAMFIAKLLSGGHLKYESDFKINIPNVKFESNSDDKIIDFQSLKREI 389
Query: 319 ---------------THKDSKNPEEDTGLNWKSDLAQKAASAFLERQANIVNLAKYVYGD 363
+S+ L L ++ A LE + +
Sbjct: 390 VKRIVFLKDLMKEYEKTGESRKAPLIPLLKQTVKLIRQKADFQLEVGYYAQGILSSI--- 446
Query: 364 MEDVSVTMEGDEAPNKKVHRKRQAELTA 391
V + +E + R LT+
Sbjct: 447 -----VCLN-NEFDEPLFEQWRINALTS 468
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 33.8 bits (78), Expect = 0.36
Identities = 32/172 (18%), Positives = 57/172 (33%), Gaps = 28/172 (16%)
Query: 358 KYVYGDMEDVSVTMEGDEAPNKK-----VHRKRQAELTAKQKNPKAFTFQSVIKGERKFR 412
VYG + G K + R E+ K +K + K+
Sbjct: 214 SSVYGRVSKSYAARVGINNFLKGYLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWT 273
Query: 413 RKEDIQAKKHHVPQVDRTPLE-PPPIVVAVVGPPQVGKSTLIRCLIK---------NFTK 462
+ KK Q+ E ++ ++GP +GK+T R L+ K
Sbjct: 274 KII----KKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK 329
Query: 463 TPLS--------VIKGPVTLIIKDSIRDCFVTGKWKASEDASELLRLDDMDD 506
LS G V ++++ +D T W E+ ++ L L + +
Sbjct: 330 QILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFF-EEVTKRLNLHRLLE 380
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO,
heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens}
PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Length = 640
Score = 33.9 bits (77), Expect = 0.40
Identities = 17/99 (17%), Positives = 34/99 (34%)
Query: 128 SDDENDEDDTSDDDTESGQGSMKKYKEQVVSSQDGRKRRKVMFDDDLEDNMDDDDDDDDD 187
++ +D + ++ + K E S DD D D
Sbjct: 534 HSEDLGKDVEFEVVGDAPEKVGPKQAEDAAKSITNGSDDGAQPSTSTAQEQDDVLIVDSD 593
Query: 188 DETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSKNE 226
+E +N + +EEE + + +E ++ K + K E
Sbjct: 594 EEDSSNNADVSEEERSRKRKLDEKENLSAKRSRIEQKEE 632
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 33.2 bits (77), Expect = 0.50
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 439 VAVVGPPQVGKSTLIRCLI 457
VA+VG P VGKSTL+ L+
Sbjct: 10 VAIVGKPNVGKSTLLNNLL 28
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class
I, activator, RNA polymeras holoenzyme, sigma70, open
complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia
coli k-12}
Length = 613
Score = 33.5 bits (76), Expect = 0.51
Identities = 25/158 (15%), Positives = 55/158 (34%), Gaps = 9/158 (5%)
Query: 178 MDDDDDDDDDDETDDDNDEDNEEESEEEEENEED-----DDEERKAEKKNSKNEHVQELT 232
M++ D DD ++ DED E + + + E D R ++ V+ LT
Sbjct: 56 MEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGT---VELLT 112
Query: 233 AKQKNPKAFTFQSVIKGERKFRSTKPTVVPQPR-MSDKDLAIRHKITSALAGLNSKEEEE 291
+ + A + I + + P + ++ A +++ + G EE
Sbjct: 113 REGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYNRVEAEEARLSDLITGFVDPNAEE 172
Query: 292 EEQEDSAFSDESADDNSSDEDETVEPKTHKDSKNPEED 329
+ + D+DE + + D +++
Sbjct: 173 DLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDN 210
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 33.0 bits (75), Expect = 0.54
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 436 PIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVI 468
V VVG VGKST I +IK F+ +VI
Sbjct: 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVI 192
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc
finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus
musculus} PDB: 3av5_A* 3av6_A*
Length = 1330
Score = 33.4 bits (75), Expect = 0.58
Identities = 12/124 (9%), Positives = 36/124 (29%), Gaps = 12/124 (9%)
Query: 104 STEKSMMEIDGIHGAMSGAISSDDSDDENDEDDTSDDDTESGQGSMKKYKEQVVSSQDGR 163
+ ++ E + ++ D +DE +E + ++ + +
Sbjct: 1 AAKRRPKEAEP--EQVAPETPEDRDEDEREEKRRKTTRKKLESHTVPVQSRSERKAAQSK 58
Query: 164 KRRKVMFDDDLEDNMDDDDDDD------DDDETDDDNDEDNEE----ESEEEEENEEDDD 213
+ + DD + +D D+ +E+ +S + +D
Sbjct: 59 SVIPKINSPKCPECGQHLDDPNLKYQQHPEDAVDEPQMLTSEKLSIYDSTSTWFDTYEDS 118
Query: 214 EERK 217
+
Sbjct: 119 PMHR 122
Score = 30.3 bits (67), Expect = 5.2
Identities = 10/62 (16%), Positives = 21/62 (33%)
Query: 163 RKRRKVMFDDDLEDNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKN 222
KRR + + +D D+D+ E + ES + + +++
Sbjct: 2 AKRRPKEAEPEQVAPETPEDRDEDEREEKRRKTTRKKLESHTVPVQSRSERKAAQSKSVI 61
Query: 223 SK 224
K
Sbjct: 62 PK 63
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 32.3 bits (74), Expect = 0.60
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 438 VVAVVGPPQVGKSTLIRCLI 457
+ G VGKSTLI L
Sbjct: 3 TIIFAGRSNVGKSTLIYRLT 22
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.61
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 9/30 (30%)
Query: 951 EKQAMKARMVALKLRA---------KAAEE 971
EKQA+K +LKL A KA E
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATME 47
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces
cerevisiae}
Length = 1219
Score = 32.9 bits (75), Expect = 0.70
Identities = 12/62 (19%), Positives = 27/62 (43%)
Query: 502 DDMDDDEELFGDFEDLETGEKHSGDKSGGGSGGVSGGGSGDDKPKTRAELMEKKRKLKEQ 561
D +D+ ++FGD D + + ++ G+ D+ + +KK L++
Sbjct: 8 DKIDEMYDIFGDGHDYDWALEIENEELENGNDNNEAEEEEIDEETGAIKSTKKKISLQDI 67
Query: 562 FD 563
+D
Sbjct: 68 YD 69
Score = 32.2 bits (73), Expect = 1.2
Identities = 20/138 (14%), Positives = 49/138 (35%), Gaps = 23/138 (16%)
Query: 192 DDNDEDNEEESEEEEENEEDDDEERKAEKKNSKNEHVQELTAKQKNPKAFTFQSVIKGER 251
D +D D E E EE +D+ E + E+ + + ++ K +
Sbjct: 19 DGHDYDWALEIENEELENGNDNNEAEEEEIDEETGAIKSTKKKISLQDIY---------- 68
Query: 252 KFRSTKPTVVPQPRMSDKDLAIRHK--------ITSALAGLNSKEEEEEEQEDSAFSDES 303
+ + M++ D+ IR + + + + E++E E + +++
Sbjct: 69 -----DLEDLKKNLMTEGDMKIRKTDIPERYQELRAGITDYGNMSSEDQELERNWIAEKI 123
Query: 304 ADDNSSDEDETVEPKTHK 321
+ D + D + +
Sbjct: 124 SVDKNFDANYDLTEFKEA 141
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 32.7 bits (75), Expect = 0.76
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 439 VAVVGPPQVGKSTLIRCLI 457
+ V G VGKS+ + L+
Sbjct: 37 IVVAGRRNVGKSSFMNALV 55
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 32.2 bits (74), Expect = 0.77
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 438 VVAVVGPPQVGKSTLIRCL 456
++AV+G GKSTL+ L
Sbjct: 33 ILAVLGQNGCGKSTLLDLL 51
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 32.1 bits (74), Expect = 0.78
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 438 VVAVVGPPQVGKSTLIRCL 456
++ +VGP GKSTL+ +
Sbjct: 28 ILHLVGPNGAGKSTLLARM 46
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 32.7 bits (75), Expect = 0.78
Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 3/98 (3%)
Query: 360 VYGDMEDVSVTMEGDEAPNKKVHRKRQAELTAKQKNPKAFTFQSVIKGERKFRRKEDIQA 419
VYG T G + + + + + ER+ +
Sbjct: 307 VYGIFSKPKGTRNGINEFLQGYLKDENVRF--RPYEIRFTKLSERVDVERETLVEYPRLV 364
Query: 420 KKHHVPQVDRTPLE-PPPIVVAVVGPPQVGKSTLIRCL 456
K + +++ P E V+ +VGP +GK+T ++ L
Sbjct: 365 KDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKML 402
>1rxt_A Myristoyl-, glycylpeptide N-tetradecanoyltransferase 1; alpha-beta
structure, unique N-myristoyltransferase fold; 3.00A
{Homo sapiens} SCOP: d.108.1.2 d.108.1.2
Length = 496
Score = 32.8 bits (74), Expect = 0.80
Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
Query: 178 MDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSKNEHVQELTAKQKN 237
M + + + + +D +N+EDN + D ++K +K+ K E E + Q
Sbjct: 19 MMEGNGNGHEHCSDCENEEDN-SYNRGGLSPANDTGAKKKKKKQKKKKEKGSETDSAQDQ 77
Query: 238 PKAFTFQSVIKGERKFR 254
P + + +
Sbjct: 78 PVKMNSLPAERIQEIQK 94
Score = 30.5 bits (68), Expect = 3.4
Identities = 18/106 (16%), Positives = 34/106 (32%), Gaps = 26/106 (24%)
Query: 179 DDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSKNEHVQELTAKQKNP 238
+ + + + D +E++ + D ++K +K+ K E E + Q P
Sbjct: 19 MMEGNGNGHEHCSDCENEEDNSYNRGGLSPANDTGAKKKKKKQKKKKEKGSETDSAQDQP 78
Query: 239 ---------------KAFTFQSVIKG-----------ERKFRSTKP 258
KA SV +G +F T+P
Sbjct: 79 VKMNSLPAERIQEIQKAIELFSVGQGPAKTMEEASKRSYQFWDTQP 124
>3t5v_C 26S proteasome complex subunit SEM1; PCI, mRNA nuclear export,
mRNA, nuclear, transcription; 2.90A {Saccharomyces
cerevisiae}
Length = 89
Score = 30.2 bits (67), Expect = 0.86
Identities = 16/86 (18%), Positives = 36/86 (41%)
Query: 142 TESGQGSMKKYKEQVVSSQDGRKRRKVMFDDDLEDNMDDDDDDDDDDETDDDNDEDNEEE 201
T+ + + + ++ + DD+ ED D + + +++ + EE
Sbjct: 3 TDVAAAQAQSKIDLTKKKNEEINKKSLEEDDEFEDFPIDTWANGETIKSNAVTQTNIWEE 62
Query: 202 SEEEEENEEDDDEERKAEKKNSKNEH 227
+ ++ E ++D E KAE K E+
Sbjct: 63 NWDDVEVDDDFTNELKAELDRYKREN 88
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A
{Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A*
1zny_A* 1znz_A* 1s4q_A 1z8f_A
Length = 207
Score = 31.8 bits (73), Expect = 0.97
Identities = 15/49 (30%), Positives = 20/49 (40%)
Query: 419 AKKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSV 467
+ R VV + GP VGKST++RCL + SV
Sbjct: 3 GEGPDTKPTARGQPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSV 51
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding,
nucleoside kinase, nucleotide-binding; 2.50A {Homo
sapiens} PDB: 2uvq_A*
Length = 245
Score = 32.1 bits (73), Expect = 0.99
Identities = 9/44 (20%), Positives = 21/44 (47%)
Query: 436 PIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIKDS 479
P ++ V G GKST+ +++ + + + V ++ +D
Sbjct: 25 PFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDR 68
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold,
winged-helix-turn-helix, antiparallel-coiled-COI domain,
ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces
cerevisiae}
Length = 1108
Score = 32.5 bits (73), Expect = 1.1
Identities = 20/126 (15%), Positives = 38/126 (30%), Gaps = 19/126 (15%)
Query: 172 DDLEDNMDDDD------------------DDDDDDETDDDNDEDNEEESEEEEENEEDDD 213
D + MD D + + D D D +++ EEE EE ++
Sbjct: 30 DPFTEFMDSTDLFDVFEETPVELPTDSNGEKNADTNVGDTPDHTQDKKHGLEEEKEEHEE 89
Query: 214 EERKAEKKNSKNEHVQELTAKQKNPKAF-TFQSVIKGERKFRSTKPTVVPQPRMSDKDLA 272
+ +K S ++ K P +F+ E D +
Sbjct: 90 NNSENKKIKSNKSKTEDKNKKVVVPVLADSFEQEASREVDASKGLTNSETLQVEQDGKVR 149
Query: 273 IRHKIT 278
+ H++
Sbjct: 150 LSHQVR 155
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 31.4 bits (72), Expect = 1.1
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 422 HHVPQVDRTPLEPP-PIVVAVVGPPQVGKSTLIRCLIKNF 460
HH + + +V+ +G VG+S + L+
Sbjct: 6 HHSSGRENLYFQGRKTLVL--IGASGVGRSHIKNALLSQN 43
>3rj1_B Mediator of RNA polymerase II transcription subun; RNA polymeras
II, POL II, head module, head, regulator, helical
bundle; 4.30A {Saccharomyces cerevisiae}
Length = 583
Score = 32.2 bits (72), Expect = 1.2
Identities = 15/87 (17%), Positives = 36/87 (41%)
Query: 133 DEDDTSDDDTESGQGSMKKYKEQVVSSQDGRKRRKVMFDDDLEDNMDDDDDDDDDDETDD 192
+E + ++ + G S + + + + ++ D D D D+ D +ETD
Sbjct: 23 NEKELQNEIKQLGSDSSDGHNSEKKDTDGADENVQIGEDFMEVDYEDKDNPVDSRNETDH 82
Query: 193 DNDEDNEEESEEEEENEEDDDEERKAE 219
+E+ E + E ++ +R+ +
Sbjct: 83 KTNENGETDDNIETVMTQEQFVKRRRD 109
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 402
Score = 31.8 bits (71), Expect = 1.3
Identities = 8/54 (14%), Positives = 17/54 (31%)
Query: 153 KEQVVSSQDGRKRRKVMFDDDLEDNMDDDDDDDDDDETDDDNDEDNEEESEEEE 206
+ V ++ D L + D + E + D + + +EE
Sbjct: 349 RSFVERKLAFTANERMAEMDILTQKYEAPAYDSTEKEGAEQVDGEQRDGQLQEE 402
Score = 30.2 bits (67), Expect = 4.0
Identities = 9/65 (13%), Positives = 25/65 (38%), Gaps = 5/65 (7%)
Query: 153 KEQVVSSQDGRKRRKVMFDDDLEDNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDD 212
++ ++ +R+ ++ MD + D E+E E+ + E+ D
Sbjct: 342 NDEFSRTRSFVERKLAFTANERMAEMDILTQKYEAPAYDST-----EKEGAEQVDGEQRD 396
Query: 213 DEERK 217
+ ++
Sbjct: 397 GQLQE 401
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 31.8 bits (72), Expect = 1.4
Identities = 12/37 (32%), Positives = 15/37 (40%)
Query: 436 PIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPV 472
V VVG VGKST I +I+ T +
Sbjct: 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYF 198
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic
transport, nuclear trafficking, importin- beta, complex;
1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB:
2bku_B 3ea5_B* 3nd2_A
Length = 861
Score = 32.1 bits (72), Expect = 1.4
Identities = 8/75 (10%), Positives = 29/75 (38%), Gaps = 6/75 (8%)
Query: 123 ISSDDSDDEN------DEDDTSDDDTESGQGSMKKYKEQVVSSQDGRKRRKVMFDDDLED 176
I++ S ++ + T ++ + ++ + + S + +L +
Sbjct: 272 IATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLN 331
Query: 177 NMDDDDDDDDDDETD 191
+ ++D +DD+ +
Sbjct: 332 LLTRQNEDPEDDDWN 346
>3n44_F E1 envelope glycoprotein; viral protein, immature heterodimer,
alphavirus, receptor BI membrane fusion; HET: NAG; 2.35A
{Chikungunya virus} PDB: 3n41_F* 3n42_F* 3n43_F* 2xfc_A
Length = 473
Score = 31.9 bits (72), Expect = 1.4
Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 512 GDFEDLE--TGEKHSGDKSGGGSGGVSGGGS 540
G FED + G H + GGGSGG SGGGS
Sbjct: 435 GPFEDDDDKAGWSHPQFEKGGGSGGGSGGGS 465
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like
domain, protein binding; 1.31A {Homo sapiens} SCOP:
c.37.1.1
Length = 180
Score = 30.9 bits (71), Expect = 1.4
Identities = 6/25 (24%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 436 PIVVAVVGPPQVGKSTLIRCLIKNF 460
+V+ +G VG+ + LI
Sbjct: 7 TLVL--LGAHGVGRRHIKNTLITKH 29
>3qv0_A Mitochondrial acidic protein MAM33; A BOWL like structure,
mitochondrial oxidative phosphorylati protein binding;
2.10A {Saccharomyces cerevisiae}
Length = 227
Score = 31.2 bits (70), Expect = 1.5
Identities = 9/45 (20%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 167 KVMFDDDLEDNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEED 211
V FD + + ++ D+ T+ + D NE++ + +N +
Sbjct: 71 HVFFD--VAQIANLPYNNAMDENTEQNEDGINEDDFDALSDNFAN 113
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat
repeat, transcription factor, nucleus; 2.85A
{Saccharomyces cerevisiae}
Length = 649
Score = 31.8 bits (71), Expect = 1.5
Identities = 10/58 (17%), Positives = 29/58 (50%)
Query: 169 MFDDDLEDNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSKNE 226
+ D+E + D+ DDD D+ D + + +++ +++ ++DD+ + ++
Sbjct: 259 IISIDVELQNELDELDDDVDDDDLEEVDLEDDDDLDDDSGDDDDENCGNSNEELRSGA 316
Score = 29.5 bits (65), Expect = 7.3
Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 5/54 (9%)
Query: 144 SGQGSMKKYKEQVVSSQDG-----RKRRKVMFDDDLEDNMDDDDDDDDDDETDD 192
S M QD +K+RKV F D ++ D+ +
Sbjct: 19 SHMAMMAFENTSKRPPQDFVAPIDQKKRKVQFSDSTGLVTLQPEEIKDEVFSAA 72
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 31.9 bits (73), Expect = 1.5
Identities = 28/162 (17%), Positives = 55/162 (33%), Gaps = 17/162 (10%)
Query: 360 VYGDMEDVSVTMEGDEAPNKKVHRKRQAELTAKQKNPKAFTFQSVIKGERKFRRKEDIQA 419
VYG T G + + + + I+ E
Sbjct: 237 VYGIFSQPKGTRNGINEFLRGYLKDENVRFRPYEIKFTKTGERVEIERETLVTYPR--LV 294
Query: 420 KKHHVPQVDRTPLE-PPPIVVAVVGPPQVGKSTLIRCLIKNFTKT------PLSVIKGP- 471
K + +++ P E V+ +VGP +GK+T ++ L T L+V P
Sbjct: 295 KDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQ 354
Query: 472 -VTLIIKDSIRDCF---VTGKWKASEDASELLR---LDDMDD 506
+ + ++ + K ++ +ELL+ + D+ D
Sbjct: 355 YIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYD 396
>2o8g_I IPP-2, protein phosphatase inhibitor 2; hydrolase-inhibitor comple;
2.50A {Mus musculus} PDB: 2o8a_I
Length = 206
Score = 31.3 bits (70), Expect = 1.5
Identities = 18/102 (17%), Positives = 41/102 (40%), Gaps = 10/102 (9%)
Query: 124 SSDDSDDENDEDDTSDDDTESGQGSMKKYKEQVVSSQDGRKRRKVMFDDDL------EDN 177
+++ S+ + + E S E+ + +RK+ +++ L +
Sbjct: 107 AAEGSEPKYRTREQESSGEEDNDLSP----EEREKKRQFEMKRKLHYNEGLNIKLARQLI 162
Query: 178 MDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAE 219
D DDD+D+E + D D+ E + + D + K++
Sbjct: 163 SKDLHDDDEDEEMAETADGDSMNVEESSQGSTTSDHLQHKSQ 204
>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium,
cell adhesion, EGF-like domain, glycoprotein, membrane,
metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C*
2wqz_C* 1c4r_A 3bop_A 3mw4_A*
Length = 178
Score = 31.0 bits (70), Expect = 1.6
Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 7/62 (11%)
Query: 598 LDDNARVELEGFRAGLYIRVELDGMPCEL-------IENFDPTYPLIVGGLQPGEETIGC 650
++D + R+G +++D P + F+ +I+GG + G+ G
Sbjct: 88 INDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQGQPFQGQ 147
Query: 651 VR 652
+
Sbjct: 148 LS 149
>2yle_A Protein spire homolog 1; actin-binding protein, actin
polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A
3rbw_A
Length = 229
Score = 30.9 bits (69), Expect = 1.8
Identities = 9/39 (23%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 172 DDLEDNM-DDDDDDDDDDETDDDNDEDNEEESEEEEENE 209
+ L D+M + + D +DE + +E +E E+ + +
Sbjct: 147 EQLIDHMANTVEADGSNDEGYEAAEEGLGDEDEKRKISA 185
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 30.8 bits (69), Expect = 1.9
Identities = 7/20 (35%), Positives = 15/20 (75%)
Query: 439 VAVVGPPQVGKSTLIRCLIK 458
+ + G P VGK+TL++ +++
Sbjct: 3 IIITGEPGVGKTTLVKKIVE 22
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug
gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A
{Herpes simplex virus} SCOP: c.37.1.1
Length = 376
Score = 31.4 bits (70), Expect = 1.9
Identities = 13/62 (20%), Positives = 27/62 (43%)
Query: 412 RRKEDIQAKKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGP 471
RR ++ +V P + V + GP +GK+T + L+ ++ + + P
Sbjct: 25 RRTALRPRRQQEATEVRPEQKMPTLLRVYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEP 84
Query: 472 VT 473
+T
Sbjct: 85 MT 86
>1j7n_A Lethal factor precursor; anthrax, lethal toxin, zinc
metalloprotease, mapkk, MEK; 2.30A {Bacillus anthracis}
SCOP: d.92.1.14 d.92.1.14 d.166.1.1 PDB: 1jky_A 1pwp_A*
1pwq_A* 1pwv_A 1zxv_A* 1pwu_A* 1pww_A 3kwv_C
Length = 776
Score = 31.5 bits (70), Expect = 2.0
Identities = 15/131 (11%), Positives = 42/131 (32%), Gaps = 1/131 (0%)
Query: 142 TESGQGSMKKYKEQVVSSQDGRKRRKVMFDDDLEDNMDDDDDDDDDDETDDD-NDEDNEE 200
+E G+G +KK + + +D + +L + D D E + +
Sbjct: 286 SEEGRGLLKKLQIPIEPKKDDIIHSLSQEEKELLKRIQIDSSDFLSTEEKEFLKKLQIDI 345
Query: 201 ESEEEEENEEDDDEERKAEKKNSKNEHVQELTAKQKNPKAFTFQSVIKGERKFRSTKPTV 260
EE +E + + + + L + + + + ++ +
Sbjct: 346 RDSLSEEEKELLNRIQVDSSNPLSEKEKEFLKKLKLDIQPYDINQRLQDTGGLIDSPSIN 405
Query: 261 VPQPRMSDKDL 271
+ + +D+
Sbjct: 406 LDVRKQYKRDI 416
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 30.9 bits (70), Expect = 2.0
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 439 VAVVGPPQVGKSTLIRCL 456
+ + G P VGKS+ + +
Sbjct: 32 IILSGAPNVGKSSFMNIV 49
>3ecq_A Protein SPR0328, endo-alpha-N-acetylgalactosaminidase; distorted
(beta/alpha)8 (TIM) barrel glycoside hydrolase DOM WALL;
2.90A {Streptococcus pneumoniae}
Length = 1531
Score = 31.4 bits (70), Expect = 2.1
Identities = 15/146 (10%), Positives = 42/146 (28%), Gaps = 2/146 (1%)
Query: 175 EDNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSKNEHVQELTAK 234
N+ D ++D + + E++ + E D + E+ + +
Sbjct: 10 TANLPADLATALATAKENDGHDFEAPKVGEDQGSPEVTDGPKTEEELLALEKEKPAEEKP 69
Query: 235 QKNPKAFTFQSVIKGERKFRSTKPTVVPQ--PRMSDKDLAIRHKITSALAGLNSKEEEEE 292
+++ A K T Q + ++ ++++S N+ +
Sbjct: 70 KEDKPAAAKPETPKTVTPEWQTVEKKEQQGTVTIREEKGVRYNQLSSTAQNDNAGKPALF 129
Query: 293 EQEDSAFSDESADDNSSDEDETVEPK 318
E++ + E
Sbjct: 130 EKKGLTVDANGNATVDLTFKDDSEKG 155
>3q6m_A Heat shock protein HSP 90-alpha; three domains, trimer of dimer,
hexamer, chaperone; 3.00A {Homo sapiens} PDB: 3q6n_A
Length = 448
Score = 31.1 bits (71), Expect = 2.1
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 189 ETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSKNEH 227
+ DD +D EE E DD+ + E+ + + H
Sbjct: 409 DEDDPTADDTSAAVTEEMPPLEGDDDTSRMEEVDHHHHH 447
Score = 31.1 bits (71), Expect = 2.1
Identities = 9/39 (23%), Positives = 14/39 (35%)
Query: 177 NMDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEE 215
+D+DD DD + E ++ EE D
Sbjct: 407 GIDEDDPTADDTSAAVTEEMPPLEGDDDTSRMEEVDHHH 445
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET:
BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Length = 341
Score = 31.3 bits (70), Expect = 2.2
Identities = 9/41 (21%), Positives = 21/41 (51%)
Query: 428 DRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVI 468
D+T ++ + + + G +GK+T + +F TP ++
Sbjct: 4 DKTDVKMGVLRIYLDGAYGIGKTTAAEEFLHHFAITPNRIL 44
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 30.2 bits (69), Expect = 2.4
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 437 IVVAVVGPPQVGKSTLIRCLIK 458
+ V + G P GKS+L+ L
Sbjct: 5 MKVVIAGRPNAGKSSLLNALAG 26
>3k8t_A Ribonucleoside-diphosphate reductase large chain; eukaryotic
ribonucleotide reductase, nucleotide analogs, all enzyme
ATP-binding; HET: DGT 2A5; 2.10A {Saccharomyces
cerevisiae} PDB: 1zyz_A 2cvs_A 2cvt_A* 2cvu_A* 2cvv_A*
1zzd_A* 2cvw_A* 2cvy_A* 2eud_A* 2zlf_A 2zlg_A* 2cvx_A*
3paw_A 3s87_A* 3s8b_A* 3s8c_A* 3s8a_A* 3tb9_A* 3tba_A*
Length = 888
Score = 31.4 bits (71), Expect = 2.4
Identities = 16/122 (13%), Positives = 35/122 (28%), Gaps = 1/122 (0%)
Query: 104 STEKSMMEIDGIHGAMSG-AISSDDSDDENDEDDTSDDDTESGQGSMKKYKEQVVSSQDG 162
+ + ++ A A S+ S ++ ++
Sbjct: 750 AAIQFTIDQKIADQATENVADISNLKRPSYMPSSASYAASDFVPAAVTANATIPSLDSSS 809
Query: 163 RKRRKVMFDDDLEDNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKN 222
R+ ++ + + E+ + E EE+ DDEE + + N
Sbjct: 810 EASREASPAPTGSHSLTKGMAELNVQESKVEVPEVPAPTKNEEKAAPIVDDEETEFDIYN 869
Query: 223 SK 224
SK
Sbjct: 870 SK 871
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase;
NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 30.5 bits (68), Expect = 2.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 439 VAVVGPPQVGKSTLIRCLIKNFTKTPLSV 467
V + GPP VGK+TLI + + + V
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPV 32
>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding,
phosphorylation, protein biosynthesis, translation
inititation; 1.8A {Homo sapiens}
Length = 208
Score = 30.5 bits (68), Expect = 2.7
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 200 EESEEEEENEEDDDEERKAEKKNSKNEHVQELTAKQKNPK 239
+E+EEE E++DE+ E SK E V ++ + + K
Sbjct: 152 KEAEEESSGGEEEDEDENIEVVYSKLESVPKVETVKSDNK 191
Score = 30.1 bits (67), Expect = 3.1
Identities = 9/53 (16%), Positives = 28/53 (52%)
Query: 175 EDNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSKNEH 227
E++ +++D+D++ + ++ + E + + +DDD + A ++ + H
Sbjct: 156 EESSGGEEEDEDENIEVVYSKLESVPKVETVKSDNKDDDIDIDAILEHHHHHH 208
>2xqy_A GH, envelope glycoprotein H; immune system-viral protein complex,
envelope protein; HET: NAG; 2.05A {Suid herpesvirus}
Length = 572
Score = 31.0 bits (69), Expect = 2.7
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 515 EDLETGEKHSGDKSGGGSGGVSGGGS 540
+D + G H + GGGSGG SGGGS
Sbjct: 539 DDDKAGWSHPQFEKGGGSGGGSGGGS 564
>3uze_C Envelope protein; dengue antibody neutralization, immune system;
HET: EPE; 2.04A {Dengue virus 3}
Length = 139
Score = 29.6 bits (66), Expect = 2.7
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 515 EDLETGEKHSGDKSGGGSGGVSGGGS 540
+D + G H + GGGSGG SGGGS
Sbjct: 106 DDDKAGWSHPQFEKGGGSGGGSGGGS 131
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori
complex, nuclear pore complex, macromolecular assembly,
MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C
3f3p_C 3ewe_B
Length = 570
Score = 31.0 bits (69), Expect = 2.9
Identities = 21/125 (16%), Positives = 31/125 (24%), Gaps = 9/125 (7%)
Query: 178 MDDDDD---DDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSKNEHVQELTAK 234
+DD + D D + DD +EEE D A
Sbjct: 3 IDDSNRLLMDVDQFDFLDDGTAQLSNNKTDEEEQLYKRDPVSGAILVPMTVNDQPIEKNG 62
Query: 235 QKNPKAFTFQSVIKGERKFRSTK------PTVVPQPRMSDKDLAIRHKITSALAGLNSKE 288
K P F + F + K P +P+ S + A + L
Sbjct: 63 DKMPLKFKLGPLSYQNMAFITAKDKYKLYPVRIPRLDTSKEFSAYVSGLFEIYRDLGDDR 122
Query: 289 EEEEE 293
Sbjct: 123 VFNVP 127
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway,
envelope stress, transduction; HET: MSE; 1.45A
{Escherichia coli str} PDB: 3qzc_A
Length = 145
Score = 29.6 bits (66), Expect = 2.9
Identities = 11/69 (15%), Positives = 25/69 (36%), Gaps = 1/69 (1%)
Query: 931 QKVASLMKMLRTNYSEKNSKEKQAMKARMVALKL-RAKAAEEAKQQRQRVMKKDIFRTLR 989
Q++ LM+ R N E + M + A +A++ + + +
Sbjct: 52 QQMRDLMQQARHEQPPVNVSELETMHRLVTAENFDENAVRAQAEKMANEQIARQVEMAKV 111
Query: 990 MPKVMGVLT 998
++ +LT
Sbjct: 112 RNQMYRLLT 120
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis,
nucleotide binding binding, cytoplasm,
nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium
tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A*
2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A*
2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A*
3avo_A* 3avq_A*
Length = 312
Score = 30.6 bits (69), Expect = 3.0
Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 426 QVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIKDS 479
+ + P P P ++ V G VGKST R L + V L+ D
Sbjct: 80 EPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH---PRVDLVTTDG 130
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB:
1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 30.4 bits (68), Expect = 3.1
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 435 PPIVVAVVGPPQVGKSTLIRCLIK 458
++V VG GK+TL +
Sbjct: 13 ASMIVVFVGTAGSGKTTLTGEFGR 36
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 30.0 bits (68), Expect = 3.1
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 436 PIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVI 468
+V+ + G + GK+TL L + + +SV
Sbjct: 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVC 54
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A
{Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Length = 308
Score = 30.7 bits (69), Expect = 3.2
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 418 QAKKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIK 477
++ + Q T + P ++++ G VGKST R L ++ P V LI
Sbjct: 62 LRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEH---RRVELITT 118
Query: 478 DS 479
D
Sbjct: 119 DG 120
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 30.0 bits (67), Expect = 3.2
Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 7/73 (9%)
Query: 438 VVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIKDSIRDCFVTGKWKASEDASE 497
VV V G P VG +T + + N K ++ + + + + D
Sbjct: 5 VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYK----MVSFGSVMFEVAKEENLVSDRDQ-- 58
Query: 498 LLRLDDMDDDEEL 510
+R D + + +
Sbjct: 59 -MRKMDPETQKRI 70
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA
helicase, DEAD-BOX, ATP-binding, HE hydrolase,
mitochondrion; HET: ANP; 1.90A {Saccharomyces
cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A*
Length = 563
Score = 30.9 bits (70), Expect = 3.2
Identities = 12/71 (16%), Positives = 25/71 (35%)
Query: 175 EDNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSKNEHVQELTAK 234
+ N D + + + + ++ S + EDDDE + SK HV +
Sbjct: 6 DGNRDQRNFGRNQRNNNSNRYRNSRFNSRPRTRSREDDDEVHFDKTTFSKLIHVPKEDNS 65
Query: 235 QKNPKAFTFQS 245
++ +
Sbjct: 66 KEVTLDSLLEE 76
>3oeo_A Spheroplast protein Y; LTXXQ, extracytoplasmic stress
response-related, signaling P; 2.70A {Escherichia coli}
Length = 138
Score = 29.6 bits (66), Expect = 3.2
Identities = 12/70 (17%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 930 EQKVASLMKMLRTNYSEKNSKEKQAMKARMVALKL-RAKAAEEAKQQRQRVMKKDIFRTL 988
+Q++ +MK R +E++AM + + + KA + + ++ +
Sbjct: 39 KQQIREIMKGQRDQMKRPPLEERRAMHDIITSDTFDKVKAEAQIAKMEEQRKANMLAHME 98
Query: 989 RMPKVMGVLT 998
K+ +LT
Sbjct: 99 TQNKIYNILT 108
>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion,
splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB:
3biw_E*
Length = 226
Score = 30.4 bits (68), Expect = 3.3
Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 7/62 (11%)
Query: 598 LDDNARVELEGFRAGLYIRVELDGMP-------CELIENFDPTYPLIVGGLQPGEETIGC 650
++D + R+G +++D P + F+ +I+GG + G+ G
Sbjct: 122 INDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQGQPFQGQ 181
Query: 651 VR 652
+
Sbjct: 182 LS 183
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor,
phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila
melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A*
3gfc_A 3cfs_B 3cfv_B
Length = 430
Score = 30.5 bits (69), Expect = 3.4
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 194 NDEDNEEESEEEEENEEDDDEERKAEKKNSK 224
+ DN ES ++ E +EE K KKN+
Sbjct: 3 DRSDNAAESFDDAVEERVINEEYKIWKKNTP 33
>3qfg_A Uncharacterized protein; structural genomics, center for structural
genomics of infec diseases, csgid, unknown function;
3.08A {Staphylococcus aureus subsp}
Length = 242
Score = 30.3 bits (67), Expect = 3.6
Identities = 10/42 (23%), Positives = 22/42 (52%)
Query: 178 MDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAE 219
+ ++ + E + + + E+E E+E+E ++DDD E
Sbjct: 200 RAETREEVEKKEKEFEEEYKKEQEREKEKEKQKDDDHSGLDE 241
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 29.7 bits (66), Expect = 3.6
Identities = 9/61 (14%), Positives = 21/61 (34%), Gaps = 4/61 (6%)
Query: 429 RTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTK----TPLSVIKGPVTLIIKDSIRDCF 484
+ +P I + + G P GK+++ + ++K D+ D
Sbjct: 3 GSMEQPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTELDTH 62
Query: 485 V 485
+
Sbjct: 63 I 63
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial
conjugation, F1-ATPase-like quaternary structure, ring
helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB:
1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Length = 437
Score = 30.6 bits (69), Expect = 3.6
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 439 VAVVGPPQVGKSTLIRCLIKNFTKTPLSVI 468
+ V G GKS L+R L ++
Sbjct: 56 LLVNGATGTGKSVLLRELAYTGLLRGDRMV 85
>3uc0_A Envelope protein; dengue antibody membrane fusion, viral
protein-immune system; 2.71A {Dengue virus 4}
Length = 165
Score = 29.8 bits (66), Expect = 3.6
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 511 FGDFE--DLETGEKHSGDKSGGGSGGVSGGGSGDDK 544
FE D + G H + GGGSGG SGGGS
Sbjct: 126 MSPFEDDDDKAGWSHPQFEKGGGSGGGSGGGSWSHP 161
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding
motif, ATP- binding, nucleotide-binding, transferase;
HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB:
3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Length = 260
Score = 30.2 bits (68), Expect = 3.7
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 438 VVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIKDSIRD 482
++ + G P VGKST + L K +K + VI ++ D IR+
Sbjct: 6 LIILTGLPGVGKSTFSKNLAKILSKNNIDVI-----VLGSDLIRE 45
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 30.3 bits (69), Expect = 3.9
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 434 PPPIVVAVVGPPQVGKSTLIRCL 456
P +A+VGP GKST++R L
Sbjct: 78 MPGQTLALVGPSGAGKSTILRLL 100
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar
mRNA localization, translation; 1.90A {Drosophila
melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Length = 165
Score = 29.4 bits (66), Expect = 4.2
Identities = 7/71 (9%), Positives = 25/71 (35%)
Query: 173 DLEDNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSKNEHVQELT 232
D+++ + + D+D D ++ + + + E+ ++++ E
Sbjct: 6 DIDNAEEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPG 65
Query: 233 AKQKNPKAFTF 243
++ F
Sbjct: 66 PQRSVEGWILF 76
>1e69_A Chromosome segregation SMC protein; structural maintenance of
chromosomes, coiled coil; 3.1A {Thermotoga maritima}
SCOP: c.37.1.12
Length = 322
Score = 30.0 bits (68), Expect = 4.2
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 427 VDRTPLEPPPIVVAVVGPPQVGKSTLI 453
+ + V A+VGP GKS +I
Sbjct: 15 GRPSLIGFSDRVTAIVGPNGSGKSNII 41
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 30.4 bits (68), Expect = 4.2
Identities = 21/94 (22%), Positives = 26/94 (27%), Gaps = 1/94 (1%)
Query: 379 KKVHRKRQAELTAKQKNPKAFT-FQSVIKGERKFRRKEDIQAKKHHVPQVDRTPLEPPPI 437
K +L K P ++ K K E D
Sbjct: 641 KAYEELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNMEFQYPGTSKPQITDINFQCSLSS 700
Query: 438 VVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGP 471
+AV+GP GKSTLI L T V
Sbjct: 701 RIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHE 734
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop,
rossman fold, AAA+, photosynthesis, metal transport;
2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB:
2x31_G
Length = 350
Score = 30.1 bits (68), Expect = 4.2
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 439 VAVVGPPQVGKSTLIRCL 456
V V G GKST +R L
Sbjct: 48 VLVFGDRGTGKSTAVRAL 65
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding,
exonucle binding, mitochondrion, rRNA processing; 3.00A
{Saccharomyces cerevisiae}
Length = 977
Score = 30.5 bits (69), Expect = 4.2
Identities = 12/76 (15%), Positives = 26/76 (34%), Gaps = 3/76 (3%)
Query: 155 QVVSSQDGRKRRKVMFDDDLEDNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEE---D 211
QV+ + K L+ D +D+ D + DDD++ ++ + + +
Sbjct: 291 QVIVELLPQSEWKAPSSIVLDSEHFDVNDNPDIEAGDDDDNNESSSNTTVISDKQRRLLA 350
Query: 212 DDEERKAEKKNSKNEH 227
D K +
Sbjct: 351 KDAMIAQRSKKIQPTA 366
>1ux6_A Thrombospondin-1; extracellular matrix, calcium binding, L-type
lectin, glycoprotein, cell adhesion, calcium-binding,
heparin- binding; 1.9A {Homo sapiens} SCOP: b.29.1.16
g.75.1.1
Length = 350
Score = 30.4 bits (68), Expect = 4.3
Identities = 9/29 (31%), Positives = 10/29 (34%)
Query: 170 FDDDLEDNMDDDDDDDDDDETDDDNDEDN 198
N D D D D D D+D D
Sbjct: 54 CPYVPNANQADHDKDGKGDACDHDDDNDG 82
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical,
structural genomics, montreal-kingston bacter structural
genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Length = 108
Score = 28.6 bits (64), Expect = 4.3
Identities = 13/69 (18%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 931 QKVASLMKMLRTNYSEKNSKEKQAMKARMVALKLRAKAAEEAKQQRQRVMKKDIFRTLRM 990
Q++ +MK R +E++AM + + AE + + K ++ +
Sbjct: 24 QQIREIMKGQRDQMKRPPLEERRAMHDIIASDTFDKAKAEAQIAKMEEQRKANMLAHMET 83
Query: 991 P-KVMGVLT 998
K+ +LT
Sbjct: 84 QNKIYNILT 92
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 30.2 bits (69), Expect = 4.3
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 74 ADLVLLLIDASFGFEMEIFEFLNICQ 99
AD+VL ++DAS + E + L +
Sbjct: 324 ADIVLFVLDASSPLDEEDRKILERIK 349
Score = 29.8 bits (68), Expect = 6.7
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 437 IVVAVVGPPQVGKSTLIRCLIK 458
+ + +VG P VGKSTL+ L+
Sbjct: 244 LRMVIVGKPNVGKSTLLNRLLN 265
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule,
nucleation, GTPase, lateral interaction, structural
protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB:
1z5v_A* 1z5w_A*
Length = 475
Score = 30.4 bits (69), Expect = 4.5
Identities = 7/44 (15%), Positives = 17/44 (38%)
Query: 172 DDLEDNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEE 215
+ ++ +D+ D E + + ++ +EED E
Sbjct: 426 EIVQQLIDEYHAATRPDYISWGTQEQVDVDGGQKLISEEDLLLE 469
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding
protein; 2.30A {Archaeoglobus fulgidus}
Length = 221
Score = 29.9 bits (68), Expect = 4.5
Identities = 12/59 (20%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 414 KEDIQAKKHHVPQVDRTPLEPP-PIVVAVVGPPQVGKSTLIRCLIKNF-TKTPLSVIKG 470
+D+ A+ + + +R L + V ++G GK+ LI I+ + + + G
Sbjct: 7 NQDLLAENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLG 65
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein,
feedback inhibition, deoxyribonucleoside kinase, salvage
pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP:
c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A*
2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A*
1zm7_A* 1zmx_A*
Length = 230
Score = 29.7 bits (66), Expect = 4.7
Identities = 8/41 (19%), Positives = 13/41 (31%)
Query: 425 PQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPL 465
+ + P V + G GK+T + K L
Sbjct: 9 RKGTKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKYKNDICL 49
>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase,
TG2, transferas; 2.00A {Homo sapiens} SCOP: b.1.18.9
b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A*
Length = 687
Score = 30.0 bits (67), Expect = 5.2
Identities = 11/75 (14%), Positives = 25/75 (33%), Gaps = 10/75 (13%)
Query: 417 IQAKKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLS---------- 466
++ LE P I + ++G P+ + + ++N L
Sbjct: 569 EPVINSYLLAERDLYLENPEIKIRILGEPKQKRKLVAEVSLQNPLPVALEGCTFTVEGAG 628
Query: 467 VIKGPVTLIIKDSIR 481
+ + T+ I D +
Sbjct: 629 LTEEQKTVEIPDPVE 643
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 30.2 bits (69), Expect = 5.3
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 74 ADLVLLLIDASFGFEMEIFEFLNICQ 99
ADLVLL IDA+ G+ E +
Sbjct: 304 ADLVLLTIDAATGWTTGDQEIYEQVK 329
Score = 29.4 bits (67), Expect = 8.9
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 437 IVVAVVGPPQVGKSTL 452
+ VA+VG P VGKS+L
Sbjct: 225 LKVAIVGRPNVGKSSL 240
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1
c.37.1.8 d.242.1.1
Length = 416
Score = 29.8 bits (68), Expect = 5.4
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 439 VAVVGPPQVGKSTLIR 454
V +VG P GKS+L+
Sbjct: 160 VGLVGYPNAGKSSLLA 175
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 29.5 bits (67), Expect = 5.4
Identities = 10/38 (26%), Positives = 22/38 (57%)
Query: 189 ETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSKNE 226
+T+ + EEE+ +EE+ + DD+ + E++ K +
Sbjct: 217 KTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPK 254
>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative,
center for eukaryotic structural genomics, CESG,
structural genomics; NMR {Arabidopsis thaliana}
Length = 150
Score = 28.8 bits (64), Expect = 5.7
Identities = 6/30 (20%), Positives = 15/30 (50%)
Query: 184 DDDDDETDDDNDEDNEEESEEEEENEEDDD 213
D+D++ + +D ++ E+ +DD
Sbjct: 108 DEDEEVNSETASDDESAFVNQDSESSDDDG 137
Score = 28.4 bits (63), Expect = 7.1
Identities = 6/34 (17%), Positives = 17/34 (50%)
Query: 176 DNMDDDDDDDDDDETDDDNDEDNEEESEEEEENE 209
+ D+D++ + + DD ++SE +++
Sbjct: 104 NKWCDEDEEVNSETASDDESAFVNQDSESSDDDG 137
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A
{Sulfolobus acidocaldarius} SCOP: c.37.1.1
Length = 194
Score = 29.3 bits (65), Expect = 5.9
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 438 VVAVVGPPQVGKSTLIRCLIKNFTKTPLSV 467
+ V G P VGKST++ + + ++
Sbjct: 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINN 32
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger,
ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Length = 1230
Score = 30.1 bits (66), Expect = 6.0
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 173 DLEDNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKA 218
D N DD+D+D++ + D +D+D + E ++++ R A
Sbjct: 308 DPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAA 353
>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue
transglutaminase,acyltransferase; 2.50A {Pagrus major}
SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4
Length = 695
Score = 29.6 bits (66), Expect = 6.7
Identities = 11/50 (22%), Positives = 16/50 (32%)
Query: 417 IQAKKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLS 466
+ + V PL P ++V V G V + N PL
Sbjct: 567 APGENGPIMTVANIPLSTPELLVQVPGKAVVWEPLTAYVSFTNPLPVPLK 616
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 28.9 bits (64), Expect = 6.7
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 433 EPPPIVVAVVGPPQVGKSTLIRCL 456
+ ++ + G P GKST+ L
Sbjct: 6 DLGGNILLLSGHPGSGKSTIAEAL 29
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase,
G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima}
PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Length = 258
Score = 29.2 bits (66), Expect = 6.8
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 437 IVVAVVGPPQVGKSTLI 453
+ VA+ G P VGK++L
Sbjct: 6 VKVALAGCPNVGKTSLF 22
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron
transport, GTPase, transmembrane, potassium; HET: GGM;
1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A*
3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Length = 272
Score = 29.2 bits (66), Expect = 7.4
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 436 PIVVAVVGPPQVGKSTLI 453
+A++G P GK++L
Sbjct: 3 MTEIALIGNPNSGKTSLF 20
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 29.1 bits (66), Expect = 7.5
Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 19/75 (25%)
Query: 439 VAVVGPPQVGKSTLIRCL----------------IKNFTKTPLSVIKGPV---TLIIKDS 479
A+VG GKST+ + L + + + + I G V T++ ++
Sbjct: 49 CALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNET 108
Query: 480 IRDCFVTGKWKASED 494
I+ + GK A+++
Sbjct: 109 IKYNILYGKLDATDE 123
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell
membrane, ION transport, transmembrane; HET: GNP; 1.90A
{Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Length = 165
Score = 28.6 bits (65), Expect = 7.7
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 436 PIVVAVVGPPQVGKSTL 452
+A++G P VGKST+
Sbjct: 3 SYEIALIGNPNVGKSTI 19
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 29.8 bits (67), Expect = 7.7
Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 14/91 (15%)
Query: 434 PPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGP--VTLIIKDS---IRDCFVTGK 488
PP + + GPP GK+ + R + T +I GP ++ + +S +R F
Sbjct: 236 KPPRGILLYGPPGTGKTLIARAVANE-TGAFFFLINGPEIMSKLAGESESNLRKAFE--- 291
Query: 489 WKASEDASELLRLDDMD----DDEELFGDFE 515
+A ++A ++ +D++D E+ G+ E
Sbjct: 292 -EAEKNAPAIIFIDELDAIAPKREKTHGEVE 321
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining,
protein/nucleic acid complex, alpha/beta domain, beta
barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1
c.62.1.3 PDB: 1jeq_A* 3rzx_B
Length = 609
Score = 29.5 bits (65), Expect = 7.9
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 184 DDDDDETDDDNDEDNEEESEEEEENEEDDDEERK 217
+ + DE+ EEE EE E D +
Sbjct: 2 SGWESYYKTEGDEEAEEEQEENLEASGDYKYSGR 35
Score = 29.5 bits (65), Expect = 8.7
Identities = 4/32 (12%), Positives = 15/32 (46%)
Query: 179 DDDDDDDDDDETDDDNDEDNEEESEEEEENEE 210
+ + D+E +++ +E+ E + + +
Sbjct: 5 ESYYKTEGDEEAEEEQEENLEASGDYKYSGRD 36
>3fnd_A Chitinase; TIM-barrel, structural genomics, PSI-2, P structure
initiative, NEW YORK SGX research center for STRU
genomics, nysgxrc; 1.90A {Bacteroides thetaiotaomicron}
PDB: 3co4_A
Length = 312
Score = 29.2 bits (66), Expect = 8.0
Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 6/47 (12%)
Query: 536 SGGGSGDDKPKTRAELMEKKRKLKEQFDAEYDDKDGGGNTYYDDLKT 582
S G+ DD R + + E DKD G TYY+ T
Sbjct: 220 SLQGAVDDVRGIR------YSGILKHLGNEAADKDNIGKTYYNGRPT 260
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear
transport receptor, cell cycle, translation; HET: GNP;
2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A
1f59_A 1o6o_A 1o6p_A
Length = 462
Score = 29.4 bits (65), Expect = 8.0
Identities = 21/145 (14%), Positives = 47/145 (32%), Gaps = 12/145 (8%)
Query: 55 ITFIECNNDINSMIDISKVADLVLLLIDASFGFEMEIFEFLN-ICQVHGESTEKSMMEID 113
+ F + N D S + + + + L I ++ + E M
Sbjct: 202 LEFTKANFDKESERHFI-MQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPA- 259
Query: 114 GIHGAMSGAISSDDSDD--ENDEDDTS------DDDTESGQGSMKKYKEQVVSSQDGRKR 165
+ A+ SD + + E ++ D E+ + + + + S +
Sbjct: 260 -LFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGA 318
Query: 166 RKVMFDDDLEDNMDDDDDDDDDDET 190
+ + + D++DDDDD
Sbjct: 319 LQYLVPILTQTLTKQDENDDDDDWN 343
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO,
cell inner membrane, cell ME GTP-binding, ION transport,
membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A*
3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Length = 274
Score = 29.2 bits (66), Expect = 8.5
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 436 PIVVAVVGPPQVGKSTL 452
+ + ++G P GK+TL
Sbjct: 3 KLTIGLIGNPNSGKTTL 19
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus
musculus} SCOP: c.37.1.1
Length = 198
Score = 28.6 bits (65), Expect = 8.6
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 436 PIVVAVVGPPQVGKSTLIRCLIKNF-TKTPLSV 467
P+V++ GP GKSTL++ L + + SV
Sbjct: 6 PVVLS--GPSGAGKSTLLKKLFQEHSSIFGFSV 36
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes,
fatty acid metabolism, structure-based drug design; HET:
S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1
c.30.1.1 d.142.1.2 PDB: 1w93_A
Length = 554
Score = 29.2 bits (66), Expect = 8.8
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 693 MRYRMLKYTPQHVACMAHFWGPITRSGTGFLAVQDVAKREPGFRVIATGTILDAN 747
M Y + Y+ +H HF G T ++D K G VI IL AN
Sbjct: 2 MEYEITNYSERHTELPGHFIGLNTVDKLEESPLRDFVKSHGGHTVI--SKILIAN 54
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 29.6 bits (65), Expect = 8.9
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 432 LEPPPIVVAVVGPPQVGKSTLIRCLI 457
L+ + V+G + GKST + LI
Sbjct: 65 LQQGVFRLLVLGDMKRGKSTFLNALI 90
>3ux9_B SCFV antibody; five helices, long loop connecting helix,
hydrophobic intera cytokine-immune system complex; 2.80A
{Homo sapiens}
Length = 256
Score = 28.8 bits (65), Expect = 9.1
Identities = 5/24 (20%), Positives = 7/24 (29%)
Query: 527 KSGGGSGGVSGGGSGDDKPKTRAE 550
GGS S + +E
Sbjct: 112 LGSGGSTITSYNVYYTKLSSSGSE 135
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex,
transferase; HET: DTP; 2.80A {Homo sapiens} SCOP:
c.37.1.1
Length = 241
Score = 28.9 bits (64), Expect = 9.4
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 436 PIVVAVVGPPQVGKSTLIRCLIKNFTK 462
P +++ G VGKST ++ L K + +
Sbjct: 2 PRRLSIEGNIAVGKSTFVKLLTKTYPE 28
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 29.0 bits (66), Expect = 9.4
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 437 IVVAVVGPPQVGKSTLIRCLIK 458
+ + G P GKSTL+ L+
Sbjct: 234 VSTVIAGKPNAGKSTLLNTLLG 255
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent
factor, stress response, sporulation, large G-protein,
structural genomics, PSI; HET: G4P; 2.60A {Bacillus
subtilis} SCOP: b.117.1.1 c.37.1.8
Length = 342
Score = 29.1 bits (66), Expect = 9.6
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 439 VAVVGPPQVGKSTLIR 454
V +VG P VGKSTL+
Sbjct: 161 VGLVGFPSVGKSTLLS 176
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation;
2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X
2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
Length = 365
Score = 29.1 bits (66), Expect = 9.6
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 493 EDASELLRLDDMDDDEELFGDFEDLE 518
+ EL+ ++ E L + E+
Sbjct: 70 QGLLELMEELPAEEREALKPELEEAA 95
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle,
G-protein, prokaryote, GTP-BIND nucleotide-binding,
metal transport; 2.70A {Pyrococcus furiosus}
Length = 271
Score = 28.8 bits (65), Expect = 9.6
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 437 IVVAVVGPPQVGKSTLI 453
VA+VG P VGK+T+
Sbjct: 4 KTVALVGNPNVGKTTIF 20
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 28.6 bits (65), Expect = 9.7
Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 438 VVAVVGPPQVGKSTLIRCLIKNF 460
++A GP GKST+ L++ F
Sbjct: 30 IIAFAGPSGGGKSTIFS-LLERF 51
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.132 0.385
Gapped
Lambda K H
0.267 0.0494 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 18,065,164
Number of extensions: 1134444
Number of successful extensions: 5524
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4568
Number of HSP's successfully gapped: 465
Length of query: 1182
Length of database: 6,701,793
Length adjustment: 104
Effective length of query: 1078
Effective length of database: 3,798,009
Effective search space: 4094253702
Effective search space used: 4094253702
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.6 bits)