RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5893
(1182 letters)
>d1qkla_ a.143.1.2 (A:) RPB6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 127
Score = 45.6 bits (108), Expect = 3e-06
Identities = 13/50 (26%), Positives = 26/50 (52%)
Query: 179 DDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSKNEHV 228
D++D+ D DD D + DE ++ EEE +E+ + E+ + + +
Sbjct: 3 DNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRI 52
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 38.7 bits (90), Expect = 0.002
Identities = 16/100 (16%), Positives = 39/100 (39%), Gaps = 8/100 (8%)
Query: 438 VVAVVGPPQVGKSTLIRCLIKNFTKTPLSV-IKGPVTLIIKD------SIRDCFVTGKWK 490
++A+ G GK++L+ ++ + + G V+ + +I++ + G
Sbjct: 64 MLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENIIFGVSY 123
Query: 491 ASEDASELLRLDDMDDDEELFGDFEDLETGEKHSGDKSGG 530
+++ + D F + ++ GE SGG
Sbjct: 124 DEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGV-TLSGG 162
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 37.8 bits (87), Expect = 0.006
Identities = 14/79 (17%), Positives = 22/79 (27%), Gaps = 2/79 (2%)
Query: 432 LEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIKDSIRDCFVTGKWKA 491
++ + VAV G GKS+ I L K V + +
Sbjct: 52 IDSSVLNVAVTGETGSGKSSFINTLR-GIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVV 110
Query: 492 SEDASELLRLDDMDDDEEL 510
D + + D L
Sbjct: 111 FWD-LPGIGSTNFPPDTYL 128
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 36.9 bits (84), Expect = 0.008
Identities = 9/44 (20%), Positives = 22/44 (50%)
Query: 436 PIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIKDS 479
P ++ V G GKS++ +++ + + + V ++ +DS
Sbjct: 2 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDS 45
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 37.5 bits (86), Expect = 0.008
Identities = 11/49 (22%), Positives = 16/49 (32%)
Query: 431 PLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIKDS 479
P + + V G P GKST + + L V V +
Sbjct: 49 PYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVT 97
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 35.3 bits (80), Expect = 0.017
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 438 VVAVVGPPQVGKSTLIRCLIKNFTKTPLSVI 468
++A GK+TL++ LI +
Sbjct: 4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPG 34
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 35.2 bits (80), Expect = 0.018
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 438 VVAVVGPPQVGKSTLIRCLIKNFTKTPLSV 467
V VVG GK+TL+ + + V
Sbjct: 3 VWQVVGYKHSGKTTLMEKWVAAAVREGWRV 32
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 35.0 bits (79), Expect = 0.025
Identities = 7/19 (36%), Positives = 14/19 (73%)
Query: 439 VAVVGPPQVGKSTLIRCLI 457
+ + G P VGK+TL++ ++
Sbjct: 3 IIITGEPGVGKTTLVKKIV 21
>d2r1da1 b.29.1.4 (A:36-212) Ligand-binding domain of neurexin 1beta
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 177
Score = 34.8 bits (79), Expect = 0.030
Identities = 14/88 (15%), Positives = 30/88 (34%), Gaps = 7/88 (7%)
Query: 596 HDLDDNARVELEGFRAGLYIRVELDGMPCEL-------IENFDPTYPLIVGGLQPGEETI 648
++D + R+G +++D P + F+ +I+GG + G+
Sbjct: 85 AIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQGQPFQ 144
Query: 649 GCVRARVKKHRWYGKILKSGNPVIMSVG 676
G + + + I VG
Sbjct: 145 GQLSGLYYNGLKVLNMAAENDANIAIVG 172
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 34.8 bits (78), Expect = 0.031
Identities = 10/36 (27%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 424 VPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKN 459
P + P I VA G GKS+ + L
Sbjct: 5 APDIRHLP-SDTGIEVAFAGRSNAGKSSALNTLTNQ 39
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 34.7 bits (79), Expect = 0.035
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 431 PLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSV 467
P+EP VV VVG VGK+T I L + + V
Sbjct: 1 PVEPKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKV 37
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 34.6 bits (78), Expect = 0.059
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 437 IVVAVVGPPQVGKSTLIRCLIKN 459
++V VG GK+TL +
Sbjct: 1 MIVVFVGTAGSGKTTLTGEFGRY 23
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 33.8 bits (76), Expect = 0.064
Identities = 15/84 (17%), Positives = 27/84 (32%)
Query: 438 VVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIKDSIRDCFVTGKWKASEDASE 497
V + GPP VGK+TLI + + + V + + R F +
Sbjct: 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLS 62
Query: 498 LLRLDDMDDDEELFGDFEDLETGE 521
+ L+ E ++
Sbjct: 63 RVGLEPPPGKRECRVGQYVVDLTS 86
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 33.9 bits (76), Expect = 0.064
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 439 VAVVGPPQVGKSTLIRCLIK 458
+A+VG P VGKSTL+ L+
Sbjct: 8 IAIVGRPNVGKSTLLNKLLG 27
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 33.6 bits (75), Expect = 0.070
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 439 VAVVGPPQVGKSTLIRCLIK 458
V +VG P VGKSTL L+K
Sbjct: 3 VLIVGRPNVGKSTLFNKLVK 22
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 34.5 bits (78), Expect = 0.075
Identities = 14/37 (37%), Positives = 15/37 (40%)
Query: 431 PLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSV 467
P I V + G P VGKST I L T V
Sbjct: 46 PQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKV 82
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 34.0 bits (78), Expect = 0.078
Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 22/114 (19%)
Query: 438 VVAVVGPPQVGKSTLIRCL-----------------IKNFTKTPLSVIKGPV---TLIIK 477
VA VG GKSTLI + IK+F L G V ++
Sbjct: 46 TVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFS 105
Query: 478 DSIRDCFVTGKWKAS-EDASELLRLDDMDDDEELFGDFEDLETGEKHSGDKSGG 530
D++++ + G+ A+ E+ E ++ + D D E GE+ SGG
Sbjct: 106 DTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGV-KLSGG 158
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 33.6 bits (75), Expect = 0.081
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 438 VVAVVGPPQVGKSTLIRCLIK 458
VA+VG P VGKSTL+ L+
Sbjct: 7 FVAIVGKPNVGKSTLLNNLLG 27
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 33.0 bits (74), Expect = 0.083
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 437 IVVAVVGPPQVGKSTLIRCLIK 458
+ + +VG P VGKSTL+ L+
Sbjct: 1 LRMVIVGKPNVGKSTLLNRLLN 22
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 33.5 bits (75), Expect = 0.084
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 439 VAVVGPPQVGKSTLIRCLIK 458
V +VG P GKS+L+ + +
Sbjct: 4 VGLVGYPNAGKSSLLAAMTR 23
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 33.2 bits (74), Expect = 0.095
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 439 VAVVGPPQVGKSTLIRCLIK 458
V + G P GKS+L+ L
Sbjct: 4 VVIAGRPNAGKSSLLNALAG 23
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 33.5 bits (75), Expect = 0.096
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 436 PIVVAVVGPPQVGKSTLIRCLIK 458
I VA+VG P VGKSTL ++
Sbjct: 8 AIKVAIVGRPNVGKSTLFNAILN 30
>d1siga_ a.177.1.1 (A:) Sigma70 {Escherichia coli [TaxId: 562]}
Length = 334
Score = 33.7 bits (76), Expect = 0.11
Identities = 10/64 (15%), Positives = 27/64 (42%)
Query: 175 EDNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSKNEHVQELTAK 234
+ +D ++ ++ +++E E+EE+ ++D ++ + E EL A+
Sbjct: 56 PNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQ 115
Query: 235 QKNP 238
Sbjct: 116 YVVT 119
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 33.0 bits (74), Expect = 0.11
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 437 IVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVI 468
VV + GP VGKST++RCL + SV
Sbjct: 3 RVVVLSGPSAVGKSTVVRCLRERIPNLHFSVS 34
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 33.0 bits (74), Expect = 0.13
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 439 VAVVGPPQVGKSTLIRCLIK 458
V +VG P VGKSTL+ +
Sbjct: 4 VGLVGFPSVGKSTLLSVVSS 23
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 32.9 bits (74), Expect = 0.13
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 434 PPPIVVAVVGPPQVGKSTLIRCLIKN 459
P P VV VG P GKST I+ + +
Sbjct: 12 PNPEVVVAVGFPGAGKSTFIQEHLVS 37
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 32.7 bits (73), Expect = 0.13
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 439 VAVVGPPQVGKSTLIRCLIKNFTKT 463
+ G VGKSTLI L +
Sbjct: 3 IIFAGRSNVGKSTLIYRLTGKKVRR 27
>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a
{Human (Homo sapiens) [TaxId: 9606]}
Length = 143
Score = 32.1 bits (73), Expect = 0.17
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 165 RRKVMFDDDLEDNMDDDDDDDDDDETDDDNDEDNEEESEE 204
+ + + N D DDDE D+ D++E+ ++
Sbjct: 103 KAYGELPEHAKINETDTFGPGDDDEIQFDDIGDDDEDIDD 142
Score = 28.3 bits (63), Expect = 2.6
Identities = 11/40 (27%), Positives = 15/40 (37%)
Query: 159 SQDGRKRRKVMFDDDLEDNMDDDDDDDDDDETDDDNDEDN 198
G ++ DDD+ DD DDD D D+
Sbjct: 103 KAYGELPEHAKINETDTFGPGDDDEIQFDDIGDDDEDIDD 142
Score = 28.3 bits (63), Expect = 2.9
Identities = 6/35 (17%), Positives = 17/35 (48%)
Query: 174 LEDNMDDDDDDDDDDETDDDNDEDNEEESEEEEEN 208
L ++ ++ D DD+ D+ + +E+ ++
Sbjct: 108 LPEHAKINETDTFGPGDDDEIQFDDIGDDDEDIDD 142
Score = 27.9 bits (62), Expect = 4.6
Identities = 6/33 (18%), Positives = 17/33 (51%)
Query: 181 DDDDDDDDETDDDNDEDNEEESEEEEENEEDDD 213
+ ++ +T D+D + + +++E+ DD
Sbjct: 110 EHAKINETDTFGPGDDDEIQFDDIGDDDEDIDD 142
Score = 27.1 bits (60), Expect = 6.5
Identities = 5/33 (15%), Positives = 17/33 (51%)
Query: 182 DDDDDDDETDDDNDEDNEEESEEEEENEEDDDE 214
+ ++ +D+E + ++ +++ED D+
Sbjct: 110 EHAKINETDTFGPGDDDEIQFDDIGDDDEDIDD 142
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 32.6 bits (73), Expect = 0.17
Identities = 10/83 (12%), Positives = 26/83 (31%), Gaps = 3/83 (3%)
Query: 438 VVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIKDSIRDCFVTGKWKASEDASE 497
VV V G P VG +T + + N K ++ ++ + ++ + +
Sbjct: 3 VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKE---ENLVSDRDQMRK 59
Query: 498 LLRLDDMDDDEELFGDFEDLETG 520
+ + ++
Sbjct: 60 MDPETQKRIQKMAGRKIAEMAKE 82
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 32.1 bits (73), Expect = 0.28
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 438 VVAVVGPPQVGKSTLIRCL 456
++A GP GKST+ L
Sbjct: 30 IIAFAGPSGGGKSTIFSLL 48
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 32.0 bits (71), Expect = 0.30
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 424 VPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKN 459
+ ++ P P +A+ G VGKS+ I LI
Sbjct: 12 AVKPEQYPEGGLP-EIALAGRSNVGKSSFINSLINR 46
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 31.8 bits (72), Expect = 0.35
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 438 VVAVVGPPQVGKSTLIRCL 456
V VGP GKSTL+R +
Sbjct: 28 FVVFVGPSGCGKSTLLRMI 46
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 31.2 bits (69), Expect = 0.38
Identities = 5/25 (20%), Positives = 12/25 (48%)
Query: 439 VAVVGPPQVGKSTLIRCLIKNFTKT 463
+ ++G GK+T+++ T
Sbjct: 5 LLMLGLDNAGKTTILKKFNGEDVDT 29
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 31.7 bits (72), Expect = 0.39
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 438 VVAVVGPPQVGKSTLIRCL 456
+ ++GP GK+T +R +
Sbjct: 34 FLVLLGPSGCGKTTTLRMI 52
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding
protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 240
Score = 31.5 bits (71), Expect = 0.45
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 432 LEPPPIVVAVVGPPQVGKSTLIRCL 456
E ++GP GKS + +
Sbjct: 20 FEMGRDYCVLLGPTGAGKSVFLELI 44
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 31.5 bits (70), Expect = 0.47
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 436 PIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIKDSIR 481
P ++ +VG P GK+ + + L + L+ I P R
Sbjct: 2 PTLIVMVGLPARGKTYISKKLTRY-----LNFIGVPTREFNVGQYR 42
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 31.5 bits (70), Expect = 0.47
Identities = 7/52 (13%), Positives = 16/52 (30%)
Query: 438 VVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIKDSIRDCFVTGKW 489
+ + GP GK++L+ L + + + + S
Sbjct: 5 SIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFPGH 56
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 31.5 bits (70), Expect = 0.54
Identities = 6/33 (18%), Positives = 13/33 (39%)
Query: 435 PPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSV 467
P + G P GK++L + + + +
Sbjct: 31 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVI 63
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 31.4 bits (71), Expect = 0.54
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 438 VVAVVGPPQVGKSTLIRCL 456
+ ++GP GK+T +R +
Sbjct: 31 FMILLGPSGCGKTTTLRMI 49
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 31.2 bits (70), Expect = 0.56
Identities = 4/19 (21%), Positives = 9/19 (47%)
Query: 438 VVAVVGPPQVGKSTLIRCL 456
++GP GK+ + +
Sbjct: 28 YFVILGPTGAGKTLFLELI 46
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 31.0 bits (70), Expect = 0.57
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 438 VVAVVGPPQVGKSTLIRCL 456
VV GP +GK+TL++ +
Sbjct: 29 VVNFHGPNGIGKTTLLKTI 47
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 31.4 bits (71), Expect = 0.58
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 438 VVAVVGPPQVGKSTLIRCLIKNFTKTPLSVI 468
VA+VG GKST+ + + + ++
Sbjct: 43 TVALVGRSGSGKSTIASLITRFYDIDEGHIL 73
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 30.9 bits (69), Expect = 0.58
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 13/53 (24%)
Query: 439 VAVVGPPQVGKSTLIRCLIKN-------------FTKTPLSVIKGPVTLIIKD 478
+ ++G VGKS L+ +++ F + + V L I D
Sbjct: 5 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWD 57
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 31.1 bits (70), Expect = 0.59
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 438 VVAVVGPPQVGKSTLIRCL 456
V ++GP GKSTLI +
Sbjct: 32 VTLIIGPNGSGKSTLINVI 50
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 31.4 bits (70), Expect = 0.61
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 439 VAVVGPPQVGKSTLIRCLIKNFTKTPLSVI 468
+ V G GKS L+R L ++
Sbjct: 53 LLVNGATGTGKSVLLRELAYTGLLRGDRMV 82
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 31.1 bits (70), Expect = 0.63
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 438 VVAVVGPPQVGKSTLIRCL 456
++ +VGP GKSTL+ +
Sbjct: 27 ILHLVGPNGAGKSTLLARM 45
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 31.2 bits (70), Expect = 0.64
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 438 VVAVVGPPQVGKSTLIRCL 456
++GP GK+T +R +
Sbjct: 33 RFGILGPSGAGKTTFMRII 51
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 30.4 bits (67), Expect = 0.64
Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 1/52 (1%)
Query: 439 VAVVGPPQVGKSTLIRCLIKN-FTKTPLSVIKGPVTLIIKDSIRDCFVTGKW 489
+ +G GK+TL+ L + + L I + F G
Sbjct: 3 LLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGH 54
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 30.8 bits (68), Expect = 0.64
Identities = 13/84 (15%), Positives = 21/84 (25%), Gaps = 3/84 (3%)
Query: 439 VAVVGPPQVGKSTLIRCLIKNF---TKTPLSVIKGPVTLIIKDSIRDCFVTGKWKASEDA 495
V VG GK+ L L+ T+T ++ + + S
Sbjct: 3 VLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRF 62
Query: 496 SELLRLDDMDDDEELFGDFEDLET 519
L R D +
Sbjct: 63 QLLDRFKSSARAVVFVVDSAAFQR 86
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 31.0 bits (70), Expect = 0.64
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 438 VVAVVGPPQVGKSTLIRCL 456
V++++G GKST +RC+
Sbjct: 30 VISIIGSSGSGKSTFLRCI 48
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 30.8 bits (69), Expect = 0.65
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 431 PLE---PPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVI 468
PL P V+ +VG VGK+T I L + F + SV+
Sbjct: 1 PLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVM 41
>d1ux6a2 g.75.1.1 (A:813-936) Thrombospondin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 124
Score = 29.8 bits (66), Expect = 0.67
Identities = 8/69 (11%), Positives = 18/69 (26%)
Query: 127 DSDDENDEDDTSDDDTESGQGSMKKYKEQVVSSQDGRKRRKVMFDDDLEDNMDDDDDDDD 186
++ D ++ G + + + + D D D
Sbjct: 39 NNLDNCPYVPNANQADHDKDGKGDACDHDDDNDGIPDDKDNCRLVPNPDQKDSDGDGRGD 98
Query: 187 DDETDDDND 195
+ D D+D
Sbjct: 99 ACKDDFDHD 107
Score = 29.1 bits (64), Expect = 1.4
Identities = 15/79 (18%), Positives = 23/79 (29%), Gaps = 4/79 (5%)
Query: 129 DDENDEDDTSDDDTESGQGSMKKYKEQVVSSQD----GRKRRKVMFDDDLEDNMDDDDDD 184
N D D + + + +D + D D + DD D
Sbjct: 46 YVPNANQADHDKDGKGDACDHDDDNDGIPDDKDNCRLVPNPDQKDSDGDGRGDACKDDFD 105
Query: 185 DDDDETDDDNDEDNEEESE 203
D DD +N + SE
Sbjct: 106 HDSVPDIDDICPENVDISE 124
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 31.0 bits (70), Expect = 0.68
Identities = 5/19 (26%), Positives = 11/19 (57%)
Query: 438 VVAVVGPPQVGKSTLIRCL 456
+V ++G GK+T + +
Sbjct: 34 IVTLIGANGAGKTTTLSAI 52
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 31.0 bits (70), Expect = 0.69
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 438 VVAVVGPPQVGKSTLIRCLIKNFTKTPLSVI 468
V+ +VG GKSTL + + + + V+
Sbjct: 31 VIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 30.7 bits (68), Expect = 0.69
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 436 PIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVI 468
PIV+ GP GKSTL++ L + + +
Sbjct: 3 PIVI--SGPSGTGKSTLLKKLFAEYPDSFGFSV 33
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI
{Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 31.1 bits (69), Expect = 0.72
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 439 VAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKG-PVTLIIKDSIRDCF 484
V V G GKST +R L + ++G PV+ + I D
Sbjct: 31 VLVFGDRGTGKSTAVRALAALL--PEIEAVEGCPVSSPNVEMIPDWA 75
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 30.4 bits (67), Expect = 0.75
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 434 PPPIV---VAVVGPPQVGKSTLIRCLIKN 459
PPP + VVG VGKS L I++
Sbjct: 1 PPPSETHKLVVVGGGGVGKSALTIQFIQS 29
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 31.0 bits (70), Expect = 0.76
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 438 VVAVVGPPQVGKSTLIRCLIKNFTKTPLSVI 468
V A+VGP GKST+ L + T ++
Sbjct: 42 VTALVGPNGSGKSTVAALLQNLYQPTGGQLL 72
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 30.9 bits (69), Expect = 0.76
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 428 DRTPL---EPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVI 468
D+ P + P V+ +VG GK+T L + K V
Sbjct: 1 DKEPKVIPDKIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVG 44
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 30.7 bits (69), Expect = 0.77
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 438 VVAVVGPPQVGKSTLIRCL 456
+ ++GP GK+T +R +
Sbjct: 30 IFGLIGPNGAGKTTTLRII 48
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 30.9 bits (68), Expect = 0.79
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 438 VVAVVGPPQVGKSTLIRCLIKNF 460
+ V+G + GKS++I+ I
Sbjct: 31 ITLVLGLRRTGKSSIIKIGINEL 53
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 30.4 bits (67), Expect = 0.80
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 433 EPPPIVVAVVGPPQVGKSTLIRCLIKN 459
P I VVG VGK+ L+ N
Sbjct: 2 SPQAIKCVVVGDGAVGKTCLLISYTTN 28
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 30.3 bits (67), Expect = 0.83
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 436 PIVVAVVGPPQVGKSTLIRCLIKNF 460
P+V+ GP GKSTL++ L +
Sbjct: 2 PVVL--SGPSGAGKSTLLKKLFQEH 24
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 30.4 bits (67), Expect = 0.89
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 439 VAVVGPPQVGKSTLIRCLIKN 459
V ++G VGK++L+ +
Sbjct: 5 VIILGDSGVGKTSLMNQYVNK 25
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 959
Score = 31.4 bits (70), Expect = 0.89
Identities = 10/85 (11%), Positives = 28/85 (32%), Gaps = 4/85 (4%)
Query: 167 KVMFDDDLEDNMDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNSKNE 226
++ + + +D D D ++ + S+ +E+ D + + N
Sbjct: 862 SIIETASSQSIANLKNDYVDLDNLEEISTFG-SHFSKLVSISEKPFDPLPEIDVNNGVRL 920
Query: 227 HVQEL--TAKQKNPKAFTFQSVIKG 249
+V E + F +++
Sbjct: 921 YVAEALNKYNAISGNTF-LNTILPQ 944
>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 319
Score = 31.0 bits (69), Expect = 0.90
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 439 VAVVGPPQVGKSTLIRCL 456
+ VVG P VGKST
Sbjct: 3 IGVVGKPNVGKSTFFSAA 20
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 30.9 bits (68), Expect = 0.90
Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 413 RKEDIQAKKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNF 460
R++ +Q + R P P ++G P GK+ +R L + +
Sbjct: 21 REQQLQQLDILLGNWLRNPGHHYPRAT-LLGRPGTGKTVTLRKLWELY 67
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Length = 207
Score = 30.5 bits (68), Expect = 1.0
Identities = 8/40 (20%), Positives = 14/40 (35%)
Query: 429 RTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVI 468
R P+ + +VG GK+T L + +
Sbjct: 3 RLPVLKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPL 42
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 30.1 bits (66), Expect = 1.1
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 439 VAVVGPPQVGKSTLIRCLIKN 459
+ VVG VGKS++I+ K
Sbjct: 5 MVVVGNGAVGKSSMIQRYCKG 25
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 29.8 bits (66), Expect = 1.1
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 13/53 (24%)
Query: 439 VAVVGPPQVGKSTLIRCLIKN-------------FTKTPLSVIKGPVTLIIKD 478
+ ++G VGK+ L+R + F + + V L I D
Sbjct: 8 IVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWD 60
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 30.0 bits (66), Expect = 1.1
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 439 VAVVGPPQVGKSTLIRCLIKN 459
V ++G VGK++L+ + +
Sbjct: 5 VIILGDSGVGKTSLMHRYVND 25
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 30.1 bits (66), Expect = 1.2
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 436 PIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVI 468
+V+ + G + GK+TL L + + +SV
Sbjct: 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVC 54
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 30.2 bits (67), Expect = 1.2
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 433 EPPPIVVAVVGPPQVGKSTLIRCLIK 458
+ + + V+G VGKS+ + +I
Sbjct: 29 DVNSLTILVMGKGGVGKSSTVNSIIG 54
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 29.7 bits (65), Expect = 1.2
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 439 VAVVGPPQVGKSTLIRCLIKN 459
+ ++G GK+T++ L
Sbjct: 8 ILILGLDGAGKTTILYRLQVG 28
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 29.9 bits (66), Expect = 1.2
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSV 467
+ P VV V+G P GK T ++++F LS
Sbjct: 3 KSKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 29.8 bits (66), Expect = 1.3
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 435 PPIVVAVVGPPQVGKSTLIRCLIKN 459
+ + ++G VGKS+L+ +
Sbjct: 6 TTLKILIIGESGVGKSSLLLRFTDD 30
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 30.1 bits (67), Expect = 1.3
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 435 PPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVI 468
PP V+ VVG GK+T L K F SV+
Sbjct: 10 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVV 43
>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 296
Score = 30.2 bits (67), Expect = 1.3
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 439 VAVVGPPQVGKSTLIRCLIKN 459
+VG P VGKST R + K+
Sbjct: 13 TGIVGMPNVGKSTFFRAITKS 33
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 30.0 bits (66), Expect = 1.3
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 438 VVAVVGPPQVGKSTLIRCLIKNFTKTPLSVI 468
+ V G P VGKST++ + + ++
Sbjct: 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNK 33
>d2b5ic1 b.1.2.1 (C:130-224) Cytokine receptor common gamma chain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 28.4 bits (62), Expect = 1.4
Identities = 5/48 (10%), Positives = 14/48 (29%)
Query: 614 YIRVELDGMPCELIENFDPTYPLIVGGLQPGEETIGCVRARVKKHRWY 661
++ D ++ D + + + + VR+R
Sbjct: 35 LVQYRTDWDHSWTEQSVDYRHKFSLPSVDGQKRYTFRVRSRFNPLCGS 82
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 29.8 bits (66), Expect = 1.4
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 437 IVVAVVGPPQVGKSTLIRCLIKNF 460
+ V P GKS+LI+ L+K
Sbjct: 3 TLYIVSAPSGAGKSSLIQALLKTQ 26
>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding
protein 1 (GBP1), N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 277
Score = 30.0 bits (67), Expect = 1.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 432 LEPPPIVVAVVGPPQVGKSTLIRCL 456
+ P +VVA+VG + GKS L+ L
Sbjct: 28 ITQPMVVVAIVGLYRTGKSYLMNKL 52
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 29.7 bits (65), Expect = 1.5
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 439 VAVVGPPQVGKSTLIRCLIKNF 460
V ++G P VGKS L R
Sbjct: 4 VLLLGAPGVGKSALARIFGGVE 25
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 29.5 bits (65), Expect = 1.5
Identities = 4/21 (19%), Positives = 11/21 (52%)
Query: 439 VAVVGPPQVGKSTLIRCLIKN 459
+ ++G VGK++ + +
Sbjct: 8 ILIIGNSSVGKTSFLFRYADD 28
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 29.4 bits (65), Expect = 1.5
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 439 VAVVGPPQVGKSTLIRCLIKNF 460
+ ++G VG+ + LI
Sbjct: 6 LVLLGAHGVGRRHIKNTLITKH 27
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 29.5 bits (65), Expect = 1.5
Identities = 6/51 (11%), Positives = 15/51 (29%)
Query: 439 VAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIKDSIRDCFVTGKW 489
+ ++G GK+TL++ L + + +
Sbjct: 19 ILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGG 69
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 29.2 bits (64), Expect = 1.6
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 439 VAVVGPPQVGKSTLIRCLIKN 459
+ +VG GK+T++ L
Sbjct: 3 ILMVGLDAAGKTTILYKLKLG 23
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 29.7 bits (65), Expect = 1.6
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 432 LEPPPIVVAVVGPPQVGKSTLIRCLIK 458
++ +V+V+G GK+TL+ +
Sbjct: 1 MKIRSPIVSVLGHVDHGKTTLLDHIRG 27
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 29.3 bits (64), Expect = 1.7
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 439 VAVVGPPQVGKSTLIRCLIKN 459
+ +VG GK+T + +
Sbjct: 5 LTLVGLQYSGKTTFVNVIASG 25
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 194
Score = 29.6 bits (65), Expect = 1.7
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 436 PIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSV 467
P+VV V+G P GK T +++ + T LS
Sbjct: 1 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSA 32
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 29.5 bits (65), Expect = 1.8
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 439 VAVVGPPQVGKSTLIRCLIKN 459
V ++G VGKS L+ +N
Sbjct: 7 VVLIGDSGVGKSNLLSRFTRN 27
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major
[TaxId: 5664]}
Length = 174
Score = 29.2 bits (64), Expect = 1.8
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNF 460
+P I + + G P GK+++ +
Sbjct: 2 QPKGINILITGTPGTGKTSMAEMIAAEL 29
>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli
[TaxId: 562]}
Length = 222
Score = 29.6 bits (65), Expect = 1.9
Identities = 23/194 (11%), Positives = 49/194 (25%), Gaps = 5/194 (2%)
Query: 428 DRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFT-KTPLSVIKGPVTLIIKDSIRDCFVT 486
+ +V + G GKST + + L + RD +
Sbjct: 16 FARTFDLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLH 75
Query: 487 GKWKASEDASELLRLDDMDDDEELFGDFEDLETGEKHSGDKSGGGSGGVSGGGSGDDKPK 546
GK KA +L + + G G D G+
Sbjct: 76 GKLKAGV-CYSMLDTINSRHQRVVVGVRLQQVAGRDRKVDIKPFAIQGLPMSVQPTQLVT 134
Query: 547 TRAELMEKKRKLKEQFDAEYDDKDGGGNTYYDDLK--TQATRQAELNRQQFHDLDDNARV 604
+ + + + + +G ++ + + ++ D ++
Sbjct: 135 ETLNERQARVLPLNELKDKLEAMEGVQFKQFNSITDYHSLMFDLGIIARRLRSASDRSKF 194
Query: 605 ELEGFRAGLYIRVE 618
A LY +
Sbjct: 195 -YRLIEASLYGGIS 207
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
domain {Methanococcus maripaludis [TaxId: 39152]}
Length = 179
Score = 29.3 bits (64), Expect = 1.9
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 437 IVVAVVGPPQVGKSTLIRCLIK 458
I + + G GK+TL + L +
Sbjct: 6 INLGIFGHIDHGKTTLSKVLTE 27
>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal
domain {Haemophilus influenzae [TaxId: 727]}
Length = 278
Score = 29.5 bits (66), Expect = 2.0
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 439 VAVVGPPQVGKSTLIRCLIKN 459
+VG P VGKSTL L K
Sbjct: 5 CGIVGLPNVGKSTLFNALTKA 25
>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type
1, different strains [TaxId: 10298]}
Length = 329
Score = 29.6 bits (66), Expect = 2.0
Identities = 10/40 (25%), Positives = 21/40 (52%)
Query: 434 PPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVT 473
P + V + GP +GK+T + L+ ++ + + P+T
Sbjct: 2 PTLLRVYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEPMT 41
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 29.5 bits (66), Expect = 2.1
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 438 VVAVVGPPQVGKSTLIRCLIKNFTKT 463
+ V+G GKSTLIRC+ T
Sbjct: 33 IYGVIGASGAGKSTLIRCVNLLERPT 58
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 29.2 bits (64), Expect = 2.2
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 439 VAVVGPPQVGKSTLIRCLIKN 459
VAV G VGKS+L+ +K
Sbjct: 5 VAVFGAGGVGKSSLVLRFVKG 25
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 29.1 bits (64), Expect = 2.2
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 439 VAVVGPPQVGKSTLIRCLIKN 459
+ +G VGK+T + N
Sbjct: 8 LLALGDSGVGKTTFLYRYTDN 28
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 29.0 bits (64), Expect = 2.3
Identities = 4/21 (19%), Positives = 12/21 (57%)
Query: 439 VAVVGPPQVGKSTLIRCLIKN 459
+ ++G VGK+ ++ ++
Sbjct: 9 LLLIGDSGVGKTCVLFRFSED 29
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 28.8 bits (63), Expect = 2.4
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 439 VAVVGPPQVGKSTLIRCLIKN 459
+ +G VGK++LI + +
Sbjct: 3 LVFLGEQSVGKTSLITRFMYD 23
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 28.8 bits (63), Expect = 2.5
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 435 PPIVVAVVGPPQVGKSTLIRCLIKN 459
P + + V+G + GKS+LI +
Sbjct: 4 PELRLGVLGDARSGKSSLIHRFLTG 28
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 28.7 bits (63), Expect = 2.6
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 439 VAVVGPPQVGKSTLIRCLIKN 459
V+G GKS L+ I+
Sbjct: 8 FLVIGNAGTGKSCLLHQFIEK 28
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 28.9 bits (63), Expect = 2.6
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 439 VAVVGPPQVGKSTLIRCLIKN 459
+ ++G VGKS+++ + N
Sbjct: 6 LVLLGEAAVGKSSIVLRFVSN 26
>d1p32a_ d.25.1.1 (A:) Acidic mitochondrial matrix protein p32
{Human (Homo sapiens) [TaxId: 9606]}
Length = 209
Score = 29.1 bits (65), Expect = 2.7
Identities = 8/47 (17%), Positives = 15/47 (31%)
Query: 177 NMDDDDDDDDDDETDDDNDEDNEEESEEEEENEEDDDEERKAEKKNS 223
N+++ D E + + EE+ E E K +
Sbjct: 61 NINNSIPPTFDGEEEPSQGQKVEEQEPELTSTPNFVVEVIKNDDGKK 107
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 29.1 bits (64), Expect = 2.7
Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 13/53 (24%)
Query: 439 VAVVGPPQVGKSTLIRCLIKN-------------FTKTPLSVIKGPVTLIIKD 478
+ ++G VGKS L+ + F + + V L I D
Sbjct: 9 LLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 61
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 29.3 bits (64), Expect = 2.8
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 432 LEPPPIVVAVVGPPQVGKSTLIRCL 456
+E + ++G GKS+L+ +
Sbjct: 19 VEFKEGINLIIGQNGSGKSSLLDAI 43
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 28.5 bits (62), Expect = 2.9
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 439 VAVVGPPQVGKSTLIRCLIKN 459
+ V+G VGK+ L
Sbjct: 5 IIVIGDSNVGKTCLTYRFCAG 25
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 28.7 bits (63), Expect = 2.9
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 435 PPIVVAVVGPPQVGKSTLIRCLIKNF 460
P+ V + G P GK T + +
Sbjct: 2 DPLKVMISGAPASGKGTQCELIKTKY 27
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 28.8 bits (63), Expect = 2.9
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 439 VAVVGPPQVGKSTLIRCLIKN 459
+ VVG VGKS L LI+N
Sbjct: 6 LVVVGAGGVGKSALTIQLIQN 26
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 28.8 bits (63), Expect = 2.9
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 434 PPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSV 467
P + ++GPP GK T L KNF L+
Sbjct: 1 PKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 34
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 28.9 bits (63), Expect = 3.0
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 439 VAVVGPPQVGKSTLIRCLIKNF 460
+ +G GK+TL+ L +
Sbjct: 16 LVFLGLDNAGKTTLLHMLKDDR 37
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 29.0 bits (65), Expect = 3.1
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 438 VVAVVGPPQVGKSTLIRC 455
V+++GP GKST++
Sbjct: 33 FVSIMGPSGSGKSTMLNI 50
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 28.4 bits (62), Expect = 3.1
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 439 VAVVGPPQVGKSTLIRCLIKNFTKT 463
V +VG GK+T++ N
Sbjct: 18 VIIVGLDNAGKTTILYQFSMNEVVH 42
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 29.0 bits (64), Expect = 3.1
Identities = 8/38 (21%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 421 KHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIK 458
++P+ T P+ + GP GKS +
Sbjct: 13 DKYIPEWFETG-NKCPLFIFFSGPQGSGKSFTSIQIYN 49
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId:
1313]}
Length = 223
Score = 28.8 bits (63), Expect = 3.2
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 436 PIVVAVVGPPQVGKSTLIRCLIKNF 460
I +A+ GP GKST+ + + K+F
Sbjct: 3 TIQIAIDGPASSGKSTVAKIIAKDF 27
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 28.7 bits (63), Expect = 3.3
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 439 VAVVGPPQVGKSTLIRCLIKN 459
++G VGKS L+
Sbjct: 6 YIIIGDTGVGKSCLLLQFTDK 26
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 28.4 bits (62), Expect = 3.3
Identities = 6/21 (28%), Positives = 14/21 (66%)
Query: 439 VAVVGPPQVGKSTLIRCLIKN 459
V ++G VGKS+++ +++
Sbjct: 7 VCLLGDTGVGKSSIMWRFVED 27
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin
(Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 28.4 bits (62), Expect = 3.3
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 439 VAVVGPPQVGKSTLIRCLIKN 459
V +VG VGKS L + +
Sbjct: 7 VIMVGSGGVGKSALTLQFMYD 27
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 28.4 bits (62), Expect = 3.3
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 439 VAVVGPPQVGKSTLIRCLIKN 459
V ++G VGK++L+ +N
Sbjct: 6 VVLLGEGCVGKTSLVLRYCEN 26
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli
[TaxId: 562]}
Length = 308
Score = 28.9 bits (64), Expect = 3.3
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 418 QAKKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTP 464
++ + Q T + P ++++ G VGKST R L ++ P
Sbjct: 62 LRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWP 108
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 29.0 bits (65), Expect = 3.4
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 10/77 (12%)
Query: 434 PPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGP--VTLIIKDS---IRDCFVTGK 488
P V +VGPP GK+ L + + K P I G V + + +RD F
Sbjct: 43 KIPKGVLMVGPPGTGKTLLAKAIAGE-AKVPFFTISGSDFVEMFVGVGASRVRDMFE--- 98
Query: 489 WKASEDASELLRLDDMD 505
+A + A ++ +D++D
Sbjct: 99 -QAKKAAPCIIFIDEID 114
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 28.3 bits (62), Expect = 3.5
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 439 VAVVGPPQVGKSTLIRCLIKN 459
V +VG VGK+ L+
Sbjct: 9 VMLVGDSGVGKTCLLVRFKDG 29
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 28.1 bits (61), Expect = 3.7
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 438 VVAVVGPPQVGKSTLIRCLIKNFTKTPLS 466
++ +G P GKST R I
Sbjct: 4 IILTIGCPGSGKSTWAREFIAKNPGFYNI 32
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 197
Score = 28.4 bits (62), Expect = 3.7
Identities = 8/35 (22%), Positives = 11/35 (31%)
Query: 436 PIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKG 470
P V + G GK+T + K L
Sbjct: 9 PFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPV 43
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 28.3 bits (62), Expect = 3.8
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 439 VAVVGPPQVGKSTLIRCLIKN 459
++G VGKS L+ +
Sbjct: 7 YIIIGDMGVGKSCLLHQFTEK 27
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 28.3 bits (62), Expect = 3.9
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 439 VAVVGPPQVGKSTLIRCLIKN-FTKTPLSVI 468
V V+G VGKS L + F + I
Sbjct: 6 VVVLGSGGVGKSALTVQFVTGTFIEKYDPTI 36
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 28.1 bits (61), Expect = 4.1
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 439 VAVVGPPQVGKSTLIRCLIKN 459
+ +VG GK+T ++ +
Sbjct: 6 LVLVGDGGTGKTTFVKRHLTG 26
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 28.2 bits (61), Expect = 4.1
Identities = 11/52 (21%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 439 VAVVGPPQVGKSTLIRCLIKN-FTKTPLSVIKGPVTLIIKDSIRDCFVTGKW 489
+A++G VGKS+L ++ F + I+ T +I + ++ +
Sbjct: 7 IAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVD 58
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 28.4 bits (62), Expect = 4.1
Identities = 13/98 (13%), Positives = 35/98 (35%), Gaps = 9/98 (9%)
Query: 439 VAVVGPPQVGKSTLIRCLIKNFTKTP--------LSVIKGPVTLIIKDSIRDCFVTGKWK 490
+ ++G GK+T++ L T ++ + L + D + W+
Sbjct: 20 ILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWR 79
Query: 491 AS-EDASELLRLDDMDDDEELFGDFEDLETGEKHSGDK 527
D + ++ + D D + + ++L + +
Sbjct: 80 CYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQ 117
>d1lqya_ d.167.1.1 (A:) Peptide deformylase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 184
Score = 28.3 bits (62), Expect = 4.2
Identities = 12/81 (14%), Positives = 23/81 (28%)
Query: 1089 NMNCFSFQARVKKHRWYGKILKSGNPVIMSVGWRRFQTLPIYSKQEDNMRYRMLKYTPQH 1148
+ + + Y L + V SV T + ++ +L+Y
Sbjct: 69 SKRMIAVHVTDENGTLYSYALFNPKIVSHSVQQCYLTTGEGCLSVDRDVPGYVLRYARIT 128
Query: 1149 VACMAHFWGPITRSGTGFLAV 1169
V +T G A+
Sbjct: 129 VTGTTLDGEEVTLRLKGLPAI 149
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 28.1 bits (61), Expect = 4.3
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 439 VAVVGPPQVGKSTLIRCLIKNF 460
VA++G GKS L+ L F
Sbjct: 10 VAILGGESSGKSVLVNKLAAVF 31
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 28.0 bits (61), Expect = 4.4
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 439 VAVVGPPQVGKSTLIRCLIKN 459
V ++G VGKS+L+ + N
Sbjct: 9 VILLGDGGVGKSSLMNRYVTN 29
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 28.1 bits (61), Expect = 4.7
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 439 VAVVGPPQVGKSTLIRCLIKN 459
+ ++G VGKS+L+ +K
Sbjct: 9 LVLLGESAVGKSSLVLRFVKG 29
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 28.4 bits (63), Expect = 4.8
Identities = 7/44 (15%), Positives = 16/44 (36%)
Query: 196 EDNEEESEEEEENEEDDDEERKAEKKNSKNEHVQELTAKQKNPK 239
+ E+ + +E E +E + K ++ E + P
Sbjct: 75 QPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVKGIPS 118
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 28.1 bits (61), Expect = 4.8
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 439 VAVVGPPQVGKSTLIRCLIKN 459
+A+ G VGKS L+ +
Sbjct: 5 LAIFGRAGVGKSALVVRFLTK 25
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 27.8 bits (60), Expect = 5.0
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 439 VAVVGPPQVGKSTLIRCLIKN 459
V ++G VGKSTL
Sbjct: 6 VVLIGEQGVGKSTLANIFAGV 26
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 28.6 bits (62), Expect = 5.1
Identities = 6/30 (20%), Positives = 15/30 (50%)
Query: 433 EPPPIVVAVVGPPQVGKSTLIRCLIKNFTK 462
++ +G +GK+TL + +K ++
Sbjct: 43 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSE 72
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 28.1 bits (61), Expect = 5.3
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 439 VAVVGPPQVGKSTLIRCLIKN 459
+ VVG Q GK+ L+ K+
Sbjct: 5 IVVVGDSQCGKTALLHVFAKD 25
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 27.7 bits (60), Expect = 5.7
Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 439 VAVVGPPQVGKSTLIRCLIKN-FTKTPLSVI 468
+ +VG GK+ L+ K+ F + + +
Sbjct: 5 LVIVGDGACGKTCLLIVNSKDQFPEVYVPTV 35
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 28.2 bits (61), Expect = 5.8
Identities = 10/88 (11%), Positives = 20/88 (22%)
Query: 434 PPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIKDSIRDCFVTGKWKASE 493
+ G + GK+ L L G + I + A
Sbjct: 35 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADR 94
Query: 494 DASELLRLDDMDDDEELFGDFEDLETGE 521
+ + D + +E +
Sbjct: 95 FNVDHDAVLDNVLYARAYTSEHQMELLD 122
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 28.6 bits (63), Expect = 5.9
Identities = 19/134 (14%), Positives = 45/134 (33%), Gaps = 4/134 (2%)
Query: 420 KKHHVPQVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIKDS 479
++ + + R + P I++ +GP VGK+ + R L K P ++
Sbjct: 35 RRMQLQEPLRHEVTPKNILM--IGPTGVGKTEIARRLAK-LANAPFIKVEA-TKFTEVGY 90
Query: 480 IRDCFVTGKWKASEDASELLRLDDMDDDEELFGDFEDLETGEKHSGDKSGGGSGGVSGGG 539
+ + ++ A +L+R ++ + D + + +
Sbjct: 91 VGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDS 150
Query: 540 SGDDKPKTRAELME 553
+ R +L E
Sbjct: 151 HSSTRQAFRKKLRE 164
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 27.7 bits (60), Expect = 6.0
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 438 VVAVVGPPQVGKSTLIRCLIKNF 460
+ + GP VGKST + L
Sbjct: 4 LYIITGPAGVGKSTTCKRLAAQL 26
>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 222
Score = 27.9 bits (61), Expect = 6.0
Identities = 13/78 (16%), Positives = 27/78 (34%), Gaps = 3/78 (3%)
Query: 434 PPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPV--TLIIKDSIRDCFVTGKWKA 491
P + + + G GK+TL+R ++ ++VI+ + I D K
Sbjct: 2 PIAVTL-LTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLT 60
Query: 492 SEDASELLRLDDMDDDEE 509
+ + D +
Sbjct: 61 NGCICCSRSNELEDALLD 78
>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum
[TaxId: 44689]}
Length = 306
Score = 28.3 bits (62), Expect = 6.3
Identities = 24/112 (21%), Positives = 45/112 (40%), Gaps = 11/112 (9%)
Query: 426 QVDRTPLEPPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVT-LIIKDSIRDCF 484
+ PL+ P IVV VG GKS+++ ++ + L G VT + +
Sbjct: 16 TLGSDPLDLPQIVV--VGSQSSGKSSVLENIVG---RDFLPRGSGIVTRRPLILQLTHLP 70
Query: 485 VTGKWKASEDASELLRLDDMDDDEELFGDFEDLETGEKHSGDKSGGGSGGVS 536
+ +++ E L ++F DF ++ D+ G + G+S
Sbjct: 71 IADDGSQTQEWGEFL-----HKPNDMFYDFSEIREEIIRDTDRMTGKNKGIS 117
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 27.6 bits (60), Expect = 6.4
Identities = 7/46 (15%), Positives = 20/46 (43%)
Query: 439 VAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIKDSIRDCF 484
+ ++G GK+T++ L + T + + V + +++
Sbjct: 15 ILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNV 60
>d1vi1a_ c.77.1.4 (A:) Fatty acid/phospholipid synthesis protein PlsX
{Bacillus subtilis [TaxId: 1423]}
Length = 334
Score = 28.1 bits (62), Expect = 6.5
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 7/61 (11%)
Query: 982 KDIFRTLRMPKVMGVLTHLDMLKNNKTLKTTKKMLKHRFWTEVYAGAKLFYLSGIV---H 1038
IF+ +R + + L LK K +++ Y GA LF L V H
Sbjct: 241 LSIFKMMRDVMTSTLTSKLAAAVLKPKLKEMKMKMEYS----NYGGASLFGLKAPVIKAH 296
Query: 1039 G 1039
G
Sbjct: 297 G 297
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 27.6 bits (60), Expect = 6.6
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 439 VAVVGPPQVGKSTLIRCLIKN 459
VVG VGK+ L+ +
Sbjct: 12 CVVVGDGAVGKTCLLMSYAND 32
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 27.7 bits (60), Expect = 6.7
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 438 VVAVVGPPQVGKSTLIRCLIK 458
++ + G GKS ++RCL
Sbjct: 5 MIILNGGSSAGKSGIVRCLQS 25
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 27.6 bits (60), Expect = 6.7
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 438 VVAVVGPPQVGKSTLIRCLIK 458
++ + G P GKST+ L
Sbjct: 6 ILLLSGHPGSGKSTIAEALAN 26
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 28.0 bits (61), Expect = 6.9
Identities = 16/128 (12%), Positives = 37/128 (28%)
Query: 434 PPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLIIKDSIRDCFVTGKWKASE 493
++ G GK+ L+ ++N I +R+ + G
Sbjct: 24 FKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEM 83
Query: 494 DASELLRLDDMDDDEELFGDFEDLETGEKHSGDKSGGGSGGVSGGGSGDDKPKTRAELME 553
+ LL++ + D + E + + +S G R ++
Sbjct: 84 ERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIG 143
Query: 554 KKRKLKEQ 561
K++
Sbjct: 144 VTGYAKQE 151
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 27.6 bits (60), Expect = 6.9
Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 439 VAVVGPPQVGKSTLIRCLIKN-FTKTPLSVIKGPVTLIIKDSIRDCFVTGKW 489
+ V+G VGKS L ++ F + I+ ++ + C +
Sbjct: 6 LVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILD 57
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 169
Score = 27.3 bits (59), Expect = 7.0
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 439 VAVVGPPQVGKSTLIRCLIKN 459
+ VVG VGKS L +
Sbjct: 7 LVVVGDGGVGKSALTIQFFQK 27
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 208
Score = 27.9 bits (61), Expect = 7.0
Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 5/70 (7%)
Query: 416 DIQAKKHHVPQVDRTPLEP-PPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTL 474
+I + + +RT L + + + G GKSTL L +
Sbjct: 3 NITFHASALTRSERTELRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRV----HAYR 58
Query: 475 IIKDSIRDCF 484
+ D+IR
Sbjct: 59 LDGDNIRFGL 68
>d1ofcx3 a.187.1.1 (X:697-798) HAND domain of the nucleosome
remodeling ATPase ISWI {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 102
Score = 26.3 bits (58), Expect = 7.5
Identities = 6/33 (18%), Positives = 12/33 (36%)
Query: 188 DETDDDNDEDNEEESEEEEENEEDDDEERKAEK 220
+ + + E + + + E EE EK
Sbjct: 61 NTELGSDATKVQREEQRKIDEAEPLTEEEIQEK 93
>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus
[TaxId: 10335]}
Length = 331
Score = 28.0 bits (62), Expect = 7.8
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 437 IVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVI 468
+ + + G +GK+T + +F TP ++
Sbjct: 6 LRIYLDGAYGIGKTTAAEEFLHHFAITPNRIL 37
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 251
Score = 27.8 bits (60), Expect = 7.8
Identities = 8/43 (18%), Positives = 11/43 (25%)
Query: 434 PPPIVVAVVGPPQVGKSTLIRCLIKNFTKTPLSVIKGPVTLII 476
+ + G + GKS L L L I
Sbjct: 32 ETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYI 74
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 27.3 bits (59), Expect = 8.3
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 439 VAVVGPPQVGKSTLIRCLIKN 459
VVG VGK+ L+ N
Sbjct: 6 CVVVGDGAVGKTCLLISYTTN 26
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 27.3 bits (59), Expect = 8.5
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 439 VAVVGPPQVGKSTLIRCLIKN 459
+ VVG VGKS L I++
Sbjct: 8 LVVVGGGGVGKSALTIQFIQS 28
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 27.7 bits (60), Expect = 8.6
Identities = 22/119 (18%), Positives = 34/119 (28%), Gaps = 18/119 (15%)
Query: 424 VPQVDRTPLEPPPI-----------VVAVVGPPQVGKSTLIRCLIKNFTK-----TPLSV 467
+ ++ PPP+ V A+V P GKS L L +
Sbjct: 6 INILEAFAAAPPPLDYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGEL 65
Query: 468 IKGPVTLIIKDSIRDCFVT--GKWKASEDASELLRLDDMDDDEELFGDFEDLETGEKHS 524
GPV + + A A E + D + L G ++ E
Sbjct: 66 PTGPVIYLPAEDPPTAIHHRLHALGAHLSAEERQAVADGLLIQPLIGSLPNIMAPEWFD 124
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 27.3 bits (59), Expect = 9.5
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 438 VVAVVGPPQVGKSTLIRCLIKNF 460
V+ + GP GK TL + + +
Sbjct: 5 VITIDGPSGAGKGTLCKAMAEAL 27
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.132 0.385
Gapped
Lambda K H
0.267 0.0387 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,401,693
Number of extensions: 216977
Number of successful extensions: 960
Number of sequences better than 10.0: 1
Number of HSP's gapped: 901
Number of HSP's successfully gapped: 203
Length of query: 1182
Length of database: 2,407,596
Length adjustment: 95
Effective length of query: 1087
Effective length of database: 1,103,246
Effective search space: 1199228402
Effective search space used: 1199228402
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (27.0 bits)