BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy5894
         (233 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1LSH|A Chain A, Lipid-Protein Interactions In Lipovitellin
          Length = 1056

 Score = 29.6 bits (65), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 7/88 (7%)

Query: 1   MADKLGLNPDIRELKLGSSFTNANKGSSFHTLRYDFKPASMDPNEVAKLDVGESNQVTVT 60
           +AD L  N    EL++ ++ + +    +   L  D   A M  +      +G + ++ + 
Sbjct: 830 LADLLATNI---ELRVAATTSMSQHAVAIMGLTTDLAKAGMQTHYKTSAGLGVNGKIEMN 886

Query: 61  VPHGSRETVFKGSHKPYQKECVLIIDNV 88
               +RE+ FK S KP+Q++ V+++  +
Sbjct: 887 ----ARESNFKASLKPFQQKTVVVLSTM 910


>pdb|3I57|A Chain A, Type 2 Repeat Of The Mucus Binding Protein Mub From
           Lactobacillus Reuteri
 pdb|3I57|B Chain B, Type 2 Repeat Of The Mucus Binding Protein Mub From
           Lactobacillus Reuteri
          Length = 185

 Score = 27.3 bits (59), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 6/99 (6%)

Query: 17  GSSFTNANKGSSFHTLRYDFKPASMDPNEVAKLDVGESNQVTVTVPH----GSRETVFKG 72
           G  F N +    F+T+ +     ++DPN  +      +  +T TV +    G++    + 
Sbjct: 56  GEKFDNDDTNDQFYTVIFKHHRENVDPNHSSADGTKGTKTLTETVHYKYANGTKAAEDQT 115

Query: 73  SHKPYQKECVLIIDNVTGEITLEKLSNNIQLKKTRTAPT 111
           +   + +  VL  D+VTG +   K +   Q  K  T+PT
Sbjct: 116 AQVTFTRNGVL--DDVTGIVAWGKWNEASQSYKALTSPT 152


>pdb|1LGP|A Chain A, Crystal Structure Of The Fha Domain Of The Chfr Mitotic
           Checkpoint Protein Complexed With Tungstate
          Length = 116

 Score = 26.9 bits (58), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 6/46 (13%)

Query: 81  CVLIIDNVTGEITLEKLS------NNIQLKKTRTAPTNKTDTSHVM 120
           C +++D  +G++TLE  S      N +++ K +T P    D  +++
Sbjct: 49  CRIVVDEKSGQVTLEDTSTSGTVINKLKVVKKQTCPLQTGDVIYLV 94


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.309    0.127    0.357 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,658,434
Number of Sequences: 62578
Number of extensions: 257720
Number of successful extensions: 499
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 448
Number of HSP's gapped (non-prelim): 63
length of query: 233
length of database: 14,973,337
effective HSP length: 96
effective length of query: 137
effective length of database: 8,965,849
effective search space: 1228321313
effective search space used: 1228321313
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 50 (23.9 bits)