Query psy5894
Match_columns 233
No_of_seqs 96 out of 98
Neff 3.4
Searched_HMMs 46136
Date Fri Aug 16 20:59:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5894.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5894hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4795|consensus 100.0 9.7E-40 2.1E-44 290.8 11.1 124 5-129 8-135 (264)
2 PF09816 EAF: RNA polymerase I 100.0 4.4E-34 9.6E-39 224.4 10.7 99 11-109 1-108 (109)
3 PF07930 DAP_B: D-aminopeptida 60.5 32 0.0007 27.5 5.9 55 52-108 31-85 (88)
4 PF09671 Spore_GerQ: Spore coa 57.6 17 0.00037 28.7 3.8 39 56-94 23-63 (81)
5 PF08796 DUF1797: Protein of u 47.7 25 0.00054 26.7 3.2 22 79-100 27-48 (67)
6 TIGR02728 spore_gerQ spore coa 43.3 26 0.00056 27.7 2.8 40 55-94 20-61 (82)
7 PF04715 Anth_synt_I_N: Anthra 42.0 25 0.00053 27.3 2.6 15 80-94 126-140 (140)
8 PF12134 PRP8_domainIV: PRP8 d 40.8 20 0.00043 33.0 2.1 48 49-101 19-67 (231)
9 PF13964 Kelch_6: Kelch motif 35.2 50 0.0011 21.6 2.9 26 68-93 15-41 (50)
10 COG3041 Uncharacterized protei 31.5 46 0.001 26.7 2.6 33 68-100 48-87 (91)
11 PF08208 RNA_polI_A34: DNA-dir 31.4 87 0.0019 26.8 4.5 75 38-112 13-94 (198)
12 PF14263 DUF4354: Domain of un 28.7 1.8E+02 0.0039 24.4 5.8 53 46-102 36-90 (124)
13 PF15232 DUF4585: Domain of un 27.0 39 0.00084 26.3 1.4 34 49-96 12-45 (75)
14 PRK11625 Rho-binding antitermi 25.4 1.3E+02 0.0028 23.5 4.1 42 56-100 25-71 (84)
15 PF07348 Syd: Syd protein (SUK 21.9 1.2E+02 0.0026 26.6 3.7 34 65-100 125-158 (176)
16 PF08547 CIA30: Complex I inte 21.7 4.4E+02 0.0096 21.4 7.7 38 26-63 48-88 (157)
17 smart00605 CW CW domain. 20.7 1.5E+02 0.0033 22.1 3.7 36 79-114 35-70 (94)
No 1
>KOG4795|consensus
Probab=100.00 E-value=9.7e-40 Score=290.84 Aligned_cols=124 Identities=36% Similarity=0.520 Sum_probs=110.1
Q ss_pred CCCCCceeecccccccCCCCCCCceeeeeeccccCCCCCCCceeEEecCCccEEEEeCC---CCceeeEEecCC-CCccc
Q psy5894 5 LGLNPDIRELKLGSSFTNANKGSSFHTLRYDFKPASMDPNEVAKLDVGESNQVTVTVPH---GSRETVFKGSHK-PYQKE 80 (233)
Q Consensus 5 l~l~~~~y~L~LG~SF~~~~~~~~FHTLRYDFKPASVD~SkpG~L~vg~~nqVTVtlPn---g~p~tvFkGs~k-p~kkE 80 (233)
..++.+||+|+||+||+++ .++.||||||+|||||||++++|.|+++++|+|||+||| +.|++||+|+++ ++.||
T Consensus 8 a~~~~~~~~l~LG~s~~~~-~~~~F~TlRYeFKPASIDts~~G~l~~~k~n~Vti~~~n~q~~~P~tvFkGsked~k~Kd 86 (264)
T KOG4795|consen 8 APLDRRWYNLTLGESFEKN-PSPKFCTLRYEFKPASIDTSKEGLLHKGKDNKVTIEFQNNQSTKPKTVFKGSKEDPKDKD 86 (264)
T ss_pred CcCCcceeeeeechhhccC-CCcceeEEEeecccccccCCCccceeecCCCeEEEEecCCCCCCCeeEeccccCCCCccc
Confidence 3579999999999999995 579999999999999999999999999999999999999 789999999999 56789
Q ss_pred eEEEEeCCCCcEEEeeeecceeeeecccCCCCCCcccCCCCCCCccccc
Q psy5894 81 CVLIIDNVTGEITLEKLSNNIQLKKTRTAPTNKTDTSHVMPSAIPLSRL 129 (233)
Q Consensus 81 CVLIfD~~TGeftLEKLsS~i~VKktR~~~~sk~~~~~~~~~~~p~~~~ 129 (233)
||||||+.|++++||||.++|+|||+|.++++|+...-+-.++++..++
T Consensus 87 cvLffd~~t~~~rLek~~s~i~vkkT~~E~as~~~~veq~~t~v~~~ak 135 (264)
T KOG4795|consen 87 CVLFFDEKTRLERLEKLVSNIKVKKTPDESASASRRVEQQVTPVWNSAK 135 (264)
T ss_pred eEEEEecCcchhhhhhhhhcceEeecccccccceeehhhccCccccccC
Confidence 9999999999999999999999999999999998544333333333333
No 2
>PF09816 EAF: RNA polymerase II transcription elongation factor; InterPro: IPR019194 This entry represents the N-terminal domain of ELL-associated factor (Eaf) proteins, which act as transcriptional transactivators of ELL and ELL2 RNA Polymerase II (Pol II) transcriptional elongation factors [, , , ]. Eaf proteins form a stable heterodimer complex with ELL proteins to facilitate the binding of RNA polymerase II to activate transcription elongation. ELL and EAF1 are components of Cajal bodies, which have a role in leukemogenesis []. EAF1 also has the capacity to interact with ELL1 and ELL2. The N terminus of approx 120 of EAF1 has a region of high serine, aspartic acid, and glutamic acid residues [, ].
Probab=100.00 E-value=4.4e-34 Score=224.36 Aligned_cols=99 Identities=47% Similarity=0.792 Sum_probs=89.5
Q ss_pred eeecccccccCCCCCC--CceeeeeeccccCCCCCCCceeEEec-CCccEEEEeCC--C-C--ceeeEEecCCCCc-cce
Q psy5894 11 IRELKLGSSFTNANKG--SSFHTLRYDFKPASMDPNEVAKLDVG-ESNQVTVTVPH--G-S--RETVFKGSHKPYQ-KEC 81 (233)
Q Consensus 11 ~y~L~LG~SF~~~~~~--~~FHTLRYDFKPASVD~SkpG~L~vg-~~nqVTVtlPn--g-~--p~tvFkGs~kp~k-kEC 81 (233)
+|+|+||++|...... ..||+|||||||+|||.+++|.|.++ ++++|+|++|+ + . ..++|+|++++++ +||
T Consensus 1 eY~i~LG~sl~~~~~~~~~~f~tirYnfKP~S~d~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~f~G~~~~~~~~ec 80 (109)
T PF09816_consen 1 EYPIDLGDSLLGKSSSSSPSFHTIRYNFKPASVDTSKPGTLYVGSSNDEYTLTLPNPNGSGNNETYVFKGSQRPSKEKEC 80 (109)
T ss_pred CccEEechhhccCCCcccCCEEEEEcccCCCCCCCCCCeEEEecCCCCeEEEEEeCCCCCCCcccEEEEeccCCCCCcEE
Confidence 6999999999954433 39999999999999999999999999 78899999977 2 2 2599999999987 799
Q ss_pred EEEEeCCCCcEEEeeeecceeeeecccC
Q psy5894 82 VLIIDNVTGEITLEKLSNNIQLKKTRTA 109 (233)
Q Consensus 82 VLIfD~~TGeftLEKLsS~i~VKktR~~ 109 (233)
|||||++||+|+||||+++|+|+++|++
T Consensus 81 VLifD~~~~~f~LErl~s~~~~n~~R~~ 108 (109)
T PF09816_consen 81 VLIFDPETGEFVLERLSSTINLNKTRAP 108 (109)
T ss_pred EEEEECCCCEEEEEEcceEEEEEeeccC
Confidence 9999999999999999999999999986
No 3
>PF07930 DAP_B: D-aminopeptidase, domain B; InterPro: IPR012856 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. D-aminopeptidase (Q9ZBA9 from SWISSPROT) is a dimeric enzyme with each monomer being composed of three domains. Domain B is organised to form a beta barrel made up of eight antiparallel beta strands. It is connected to domain A, the catalytic domain, by an eight-residue sequence, and also interacts with both domains A and C via non-covalent bonds. Domain B probably functions in maintaining domain C in a good position to interact with the catalytic domain []. This domain is found in peptidases that belong to MEROPS peptidase family S12 (D-Ala-D-Ala carboxypeptidase B family, clan ME).; GO: 0004177 aminopeptidase activity; PDB: 1EI5_A.
Probab=60.48 E-value=32 Score=27.49 Aligned_cols=55 Identities=16% Similarity=0.222 Sum_probs=34.5
Q ss_pred cCCccEEEEeCCCCceeeEEecCCCCccceEEEEeCCCCcEEEeeeecceeeeeccc
Q psy5894 52 GESNQVTVTVPHGSRETVFKGSHKPYQKECVLIIDNVTGEITLEKLSNNIQLKKTRT 108 (233)
Q Consensus 52 g~~nqVTVtlPng~p~tvFkGs~kp~kkECVLIfD~~TGeftLEKLsS~i~VKktR~ 108 (233)
+...+|.+.+-.+.....-.|.-+.-.---+++.|+++ .+|+|+.-|.+|.-.|-
T Consensus 31 ~~~G~~~~rya~~pE~l~~~~~~~a~s~~~~~~rDGd~--l~m~R~~ENltl~~~Rl 85 (88)
T PF07930_consen 31 AGQGRVKLRYATSPEMLDLVSENEARSSGTVLRRDGDM--LRMERLDENLTLNMKRL 85 (88)
T ss_dssp -STTEEEEE-SSS-EEEEEEETTEEE-SS-EEEEETTE--EEEEEGGGTEEEEEEE-
T ss_pred CCCceEEEEecCCCceeeccCCCcccCcceEEEEcCCe--EEEeecccceEEEeehc
Confidence 33446777776654443333433333346899999988 99999999999887774
No 4
>PF09671 Spore_GerQ: Spore coat protein (Spore_GerQ); InterPro: IPR014099 Members of this protein family are the spore coat protein GerQ of endospore-forming Firmicutes (low GC Gram-positive bacteria). This protein is cross-linked by a spore coat-associated transglutaminase.
Probab=57.56 E-value=17 Score=28.66 Aligned_cols=39 Identities=23% Similarity=0.330 Sum_probs=31.7
Q ss_pred cEEEEeCCC--CceeeEEecCCCCccceEEEEeCCCCcEEE
Q psy5894 56 QVTVTVPHG--SRETVFKGSHKPYQKECVLIIDNVTGEITL 94 (233)
Q Consensus 56 qVTVtlPng--~p~tvFkGs~kp~kkECVLIfD~~TGeftL 94 (233)
.+-+|+.|+ -...+|+|-.+...+|-|+|=|++||.--|
T Consensus 23 T~Y~Tyenn~ewnakvf~GviE~aGRDhiiisDp~tg~ryL 63 (81)
T PF09671_consen 23 TFYMTYENNSEWNAKVFRGVIEAAGRDHIIISDPKTGKRYL 63 (81)
T ss_pred EEEEEecCchhhhheeeEEEehhcCcceEEEeCCCCCcEEE
Confidence 455588883 235799999999999999999999997554
No 5
>PF08796 DUF1797: Protein of unknown function (DUF1797); InterPro: IPR014904 The function of this protein is unknown. It forms a central anti-parallel beta sheet with flanking alpha helical regions. ; PDB: 2FFG_B.
Probab=47.65 E-value=25 Score=26.68 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=18.9
Q ss_pred cceEEEEeCCCCcEEEeeeecc
Q psy5894 79 KECVLIIDNVTGEITLEKLSNN 100 (233)
Q Consensus 79 kECVLIfD~~TGeftLEKLsS~ 100 (233)
.=|..-||..|++|+||.....
T Consensus 27 ~~c~V~y~~~t~~F~l~~~~~~ 48 (67)
T PF08796_consen 27 EVCTVTYDQETETFELEEYRQK 48 (67)
T ss_dssp EEEEEEEETTTTEEEEEEEETT
T ss_pred EEEEEEEECCCCeEEEEEecCC
Confidence 3599999999999999987643
No 6
>TIGR02728 spore_gerQ spore coat protein GerQ. Members of this protein family are the spore coat protein GerQ of endospore-forming Firmicutes (low GC Gram-positive bacteria). This protein is cross-linked by a spore coat-associated transglutaminase.
Probab=43.31 E-value=26 Score=27.68 Aligned_cols=40 Identities=23% Similarity=0.336 Sum_probs=31.9
Q ss_pred ccEEEEeCCCC--ceeeEEecCCCCccceEEEEeCCCCcEEE
Q psy5894 55 NQVTVTVPHGS--RETVFKGSHKPYQKECVLIIDNVTGEITL 94 (233)
Q Consensus 55 nqVTVtlPng~--p~tvFkGs~kp~kkECVLIfD~~TGeftL 94 (233)
..|-+|+.|+. ...+|+|-.+...+|-|+|=|+.||.--|
T Consensus 20 ~T~y~Tfenn~ew~akvf~G~iE~AGRDhiiisdp~tg~RyL 61 (82)
T TIGR02728 20 ATVYMTFENSPEWAARVFRGQIENAGRDHIVISDPQSGMRYL 61 (82)
T ss_pred EEEEEEEcCChHhhhhheeeehhhcCcceEEEcCCCCCcEEE
Confidence 35566788732 24799999999999999999999997554
No 7
>PF04715 Anth_synt_I_N: Anthranilate synthase component I, N terminal region; InterPro: IPR006805 Anthranilate synthase catalyses the first step in the biosynthesis of tryptophan. Component I catalyses the formation of anthranilate using ammonia and chorismate. The catalytic site lies in the adjacent region, described in the chorismate binding enzyme family (IPR005801 from INTERPRO). This region is involved in feedback inhibition by tryptophan []. This family also contains a region of Para-aminobenzoate synthase component I.; GO: 0016833 oxo-acid-lyase activity, 0009058 biosynthetic process; PDB: 1K0G_B 1K0E_A 1I1Q_A 1I7S_C 1I7Q_C 1QDL_A.
Probab=42.03 E-value=25 Score=27.26 Aligned_cols=15 Identities=40% Similarity=0.685 Sum_probs=13.7
Q ss_pred ceEEEEeCCCCcEEE
Q psy5894 80 ECVLIIDNVTGEITL 94 (233)
Q Consensus 80 ECVLIfD~~TGeftL 94 (233)
+.+|||||.+|+..|
T Consensus 126 ~~~lv~Dh~~~~~~L 140 (140)
T PF04715_consen 126 DRVLVFDHQTGRLYL 140 (140)
T ss_dssp CEEEEEETTTTEEEE
T ss_pred ceEeEEECCCCeEeC
Confidence 799999999999876
No 8
>PF12134 PRP8_domainIV: PRP8 domain IV core; InterPro: IPR021983 This domain is found in eukaryotes, and is about 20 amino acids in length. It is found associated with PF10597 from PFAM, PF10596 from PFAM, PF10598 from PFAM, PF08083 from PFAM, PF08082 from PFAM, PF01398 from PFAM, PF08084 from PFAM. There is a conserved LILR sequence motif. The domain is a selenomethionine domain in a subunit of the spliceosome. The function of PRP8 domain IV is believed to be interaction with the splicosomal core. ; PDB: 3E66_A 3E9P_A 3SBT_A 3E9O_A 3SBG_A 3LRU_A 3E9L_A 3ENB_A.
Probab=40.76 E-value=20 Score=33.00 Aligned_cols=48 Identities=21% Similarity=0.381 Sum_probs=28.5
Q ss_pred EEecCCccEEEEeCCCCceeeEEecCCCCc-cceEEEEeCCCCcEEEeeeecce
Q psy5894 49 LDVGESNQVTVTVPHGSRETVFKGSHKPYQ-KECVLIIDNVTGEITLEKLSNNI 101 (233)
Q Consensus 49 L~vg~~nqVTVtlPng~p~tvFkGs~kp~k-kECVLIfD~~TGeftLEKLsS~i 101 (233)
+=|+..+-+.|++. ..|+|+..... --||+|||+.||..-|-=++.+.
T Consensus 19 ~fVDDtnvYrvt~h-----~t~eGn~~tkpiNG~ifIfnP~TGqLflKiihtsv 67 (231)
T PF12134_consen 19 WFVDDTNVYRVTIH-----KTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSV 67 (231)
T ss_dssp EEEEETTSSEEEEE-----E-TTS-EEEEEE-EEEEEE-TTT-EEEEEEE-GGG
T ss_pred EEEecCceEEEEEE-----eeccCCceeccccceEEEEeCCCCcEEEEEEeehh
Confidence 44444444555554 55667666432 38999999999999998887664
No 9
>PF13964 Kelch_6: Kelch motif
Probab=35.17 E-value=50 Score=21.58 Aligned_cols=26 Identities=23% Similarity=0.080 Sum_probs=18.6
Q ss_pred eeEEecCCCC-ccceEEEEeCCCCcEE
Q psy5894 68 TVFKGSHKPY-QKECVLIIDNVTGEIT 93 (233)
Q Consensus 68 tvFkGs~kp~-kkECVLIfD~~TGeft 93 (233)
-||-|..... --.+|.+||.+|++.+
T Consensus 15 yv~GG~~~~~~~~~~v~~yd~~t~~W~ 41 (50)
T PF13964_consen 15 YVFGGYDNSGKYSNDVERYDPETNTWE 41 (50)
T ss_pred EEECCCCCCCCccccEEEEcCCCCcEE
Confidence 4666666643 3589999999997654
No 10
>COG3041 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.51 E-value=46 Score=26.75 Aligned_cols=33 Identities=21% Similarity=0.355 Sum_probs=22.9
Q ss_pred eeEEecCCCC-----ccceEEEEeCC--CCcEEEeeeecc
Q psy5894 68 TVFKGSHKPY-----QKECVLIIDNV--TGEITLEKLSNN 100 (233)
Q Consensus 68 tvFkGs~kp~-----kkECVLIfD~~--TGeftLEKLsS~ 100 (233)
+--.|..+.+ +-||||||=-. ..+.+|+|+.|-
T Consensus 48 H~LtG~wkg~RdCHi~pD~lLIY~v~~~~~~L~l~RlGsH 87 (91)
T COG3041 48 HPLTGDWKGYRDCHIKPDLLLIYTVKEQEDVLRLVRLGSH 87 (91)
T ss_pred CccccCccchhhcccCCCEEEEEEEeccCCEEEEEEecch
Confidence 3445666654 23999998544 677889998764
No 11
>PF08208 RNA_polI_A34: DNA-directed RNA polymerase I subunit RPA34.5; InterPro: IPR013240 This is a family of proteins conserved from yeasts to human. Subunit A34.5 of RNA polymerase I is a non-essential subunit which is thought to help Pol I overcome topological constraints imposed on ribosomal DNA during the process of transcription [].; PDB: 3NFG_N.
Probab=31.44 E-value=87 Score=26.76 Aligned_cols=75 Identities=15% Similarity=0.207 Sum_probs=31.3
Q ss_pred cCCCCCCCceeEEe--cCCccEEEEeCC-CCceeeEEecC--CCCccceEEEEeCCCCcEEE--eeeecceeeeecccCC
Q psy5894 38 PASMDPNEVAKLDV--GESNQVTVTVPH-GSRETVFKGSH--KPYQKECVLIIDNVTGEITL--EKLSNNIQLKKTRTAP 110 (233)
Q Consensus 38 PASVD~SkpG~L~v--g~~nqVTVtlPn-g~p~tvFkGs~--kp~kkECVLIfD~~TGeftL--EKLsS~i~VKktR~~~ 110 (233)
|++||.++=-.|.| ++...+.-.+-+ +..-.+..... .....-+|||.+..++.+.+ =.++..++|...-...
T Consensus 13 P~~~~~~~l~~l~i~l~~~~~~~~~~~~~~~~Y~i~~~~~~~~~~~~~~lL~p~~~~~~~~~~~~~~~~~~~I~e~~~ip 92 (198)
T PF08208_consen 13 PASFPISSLKGLPIPLSKSQTGKPILKHKGKDYQISEDSINQEESSSISLLLPSKKGGGYLVASKPFDRFLHISEIVQIP 92 (198)
T ss_dssp ETTS-GGG-SEE---S---SBSEEEEEETTEEEEEEEGGGSGS--TTEEEEEE-SSSTTEEESB---SEEEEEEE-----
T ss_pred CCCCCHHHhCCceeeeeeccCCccceeeCCceEEEEecccCccccCCeEEEeEcCCCCceeccCCCcceEEEEEEecCCC
Confidence 77777776556666 333333323332 21112222221 23345799999999999887 3445666666555444
Q ss_pred CC
Q psy5894 111 TN 112 (233)
Q Consensus 111 ~s 112 (233)
..
T Consensus 93 ~~ 94 (198)
T PF08208_consen 93 QI 94 (198)
T ss_dssp --
T ss_pred Cc
Confidence 43
No 12
>PF14263 DUF4354: Domain of unknown function (DUF4354); PDB: 3NRF_B 3SB3_A.
Probab=28.75 E-value=1.8e+02 Score=24.40 Aligned_cols=53 Identities=23% Similarity=0.224 Sum_probs=34.5
Q ss_pred ceeEEecCCccEEEEeCCCCceeeEEecCCCC--ccceEEEEeCCCCcEEEeeeeccee
Q psy5894 46 VAKLDVGESNQVTVTVPHGSRETVFKGSHKPY--QKECVLIIDNVTGEITLEKLSNNIQ 102 (233)
Q Consensus 46 pG~L~vg~~nqVTVtlPng~p~tvFkGs~kp~--kkECVLIfD~~TGeftLEKLsS~i~ 102 (233)
.|.+.++.....|.++- ..|+..+.++- .+=|+-.||++..+|.|.-++..++
T Consensus 36 ~Gs~sv~~k~~ytktF~----V~vaN~s~~~idLsk~Cf~a~~~~gk~f~ldTVd~~L~ 90 (124)
T PF14263_consen 36 QGSVSVGGKSFYTKTFD----VTVANLSDKDIDLSKMCFKAYSPDGKEFKLDTVDEELT 90 (124)
T ss_dssp EEEEEETTEEEEEEEEE----EEEEE-SSS-EE-TT-EEEEEETTS-EEEEEEE-GGGG
T ss_pred CccEeecCccceEEEEE----EEEecCCCCccccccchhhhccccCCEEEecccchhhh
Confidence 36666666655555554 45666666653 4679999999999999999887754
No 13
>PF15232 DUF4585: Domain of unknown function (DUF4585)
Probab=26.98 E-value=39 Score=26.34 Aligned_cols=34 Identities=21% Similarity=0.168 Sum_probs=21.0
Q ss_pred EEecCCccEEEEeCCCCceeeEEecCCCCccceEEEEeCCCCcEEEee
Q psy5894 49 LDVGESNQVTVTVPHGSRETVFKGSHKPYQKECVLIIDNVTGEITLEK 96 (233)
Q Consensus 49 L~vg~~nqVTVtlPng~p~tvFkGs~kp~kkECVLIfD~~TGeftLEK 96 (233)
++..+|..+-|++|- +---=++||.|||.|.==-
T Consensus 12 ~DP~SG~Yy~vd~P~--------------Qp~~k~lfDPETGqYVeV~ 45 (75)
T PF15232_consen 12 QDPESGQYYVVDAPV--------------QPKTKTLFDPETGQYVEVL 45 (75)
T ss_pred ecCCCCCEEEEecCC--------------CcceeeeecCCCCcEEEEe
Confidence 344555566666662 1124478999999996433
No 14
>PRK11625 Rho-binding antiterminator; Provisional
Probab=25.41 E-value=1.3e+02 Score=23.53 Aligned_cols=42 Identities=19% Similarity=0.327 Sum_probs=28.2
Q ss_pred cEEEEeCCCCceeeEEecCCC----CccceEEEEe-CCCCcEEEeeeecc
Q psy5894 56 QVTVTVPHGSRETVFKGSHKP----YQKECVLIID-NVTGEITLEKLSNN 100 (233)
Q Consensus 56 qVTVtlPng~p~tvFkGs~kp----~kkECVLIfD-~~TGeftLEKLsS~ 100 (233)
.+++++.+|. .++|.-.. .+.||++|=. +++..+||++|-+.
T Consensus 25 ~l~l~l~dGe---~~~g~A~D~~~~~k~EyL~l~~~g~~~~iRLD~I~s~ 71 (84)
T PRK11625 25 MLTLELKDGE---VLQAKASDLVSRKNVEYLVVEAAGETRELRLDKIASF 71 (84)
T ss_pred eEEEEECCCC---EEEEEEEeeecCCceEEEEEEcCCCEEEEEeeeEeec
Confidence 5777887753 46666654 2349999844 44448899988764
No 15
>PF07348 Syd: Syd protein (SUKH-2); InterPro: IPR009948 This family contains a number of bacterial Syd proteins approximately 180 residues long. It has been suggested that Syd is loosely associated with the cytoplasmic surface of the cytoplasmic membrane, and that interaction with SecY may be involved in this membrane association [].; GO: 0009898 internal side of plasma membrane; PDB: 3FFV_B.
Probab=21.88 E-value=1.2e+02 Score=26.62 Aligned_cols=34 Identities=26% Similarity=0.581 Sum_probs=25.3
Q ss_pred CceeeEEecCCCCccceEEEEeCCCCcEEEeeeecc
Q psy5894 65 SRETVFKGSHKPYQKECVLIIDNVTGEITLEKLSNN 100 (233)
Q Consensus 65 ~p~tvFkGs~kp~kkECVLIfD~~TGeftLEKLsS~ 100 (233)
-+.|+|=|.... .+.|+.+|-.||+.-||.+...
T Consensus 125 q~pT~FIg~t~~--e~~lisv~N~sGeV~LE~~G~~ 158 (176)
T PF07348_consen 125 QPPTLFIGTTDS--EDMLISVDNESGEVILEQFGTK 158 (176)
T ss_dssp ---EEEEEEESS--TTEEEEEETTT--EEEEETTSS
T ss_pred cCCceeEEEecC--CCcEEEEECCCCeEEEEeCCCC
Confidence 356999998774 6899999999999999998654
No 16
>PF08547 CIA30: Complex I intermediate-associated protein 30 (CIA30); InterPro: IPR013857 Mitochondrial complex I intermediate-associated protein 30 (CIA30) is present in human and mouse, and also in Schizosaccharomyces pombe (Fission yeast) which does not contain the NADH dehydrogenase component of complex I, or many of the other essential subunits. This means it is possible that it is not directly involved in oxidative phosphorylation [, ].
Probab=21.68 E-value=4.4e+02 Score=21.41 Aligned_cols=38 Identities=21% Similarity=0.345 Sum_probs=24.7
Q ss_pred CCceeeeeeccccCCCCCCCceeE--Ee-cCCccEEEEeCC
Q psy5894 26 GSSFHTLRYDFKPASMDPNEVAKL--DV-GESNQVTVTVPH 63 (233)
Q Consensus 26 ~~~FHTLRYDFKPASVD~SkpG~L--~v-g~~nqVTVtlPn 63 (233)
...|+++|+.+....+|.+.---| .+ +.++.+.|.|-.
T Consensus 48 ~~GFa~~r~~~~~~~~dls~y~~l~l~vrgdGr~Y~~~l~~ 88 (157)
T PF08547_consen 48 NGGFASVRTPSFPSPLDLSGYDGLELRVRGDGRTYKVNLRT 88 (157)
T ss_pred CCceEEEEEccCCCcCCCCCCcEEEEEEEcCCceEEEEEEe
Confidence 478999999777777777644333 33 555556666644
No 17
>smart00605 CW CW domain.
Probab=20.69 E-value=1.5e+02 Score=22.15 Aligned_cols=36 Identities=22% Similarity=0.309 Sum_probs=26.6
Q ss_pred cceEEEEeCCCCcEEEeeeecceeeeecccCCCCCC
Q psy5894 79 KECVLIIDNVTGEITLEKLSNNIQLKKTRTAPTNKT 114 (233)
Q Consensus 79 kECVLIfD~~TGeftLEKLsS~i~VKktR~~~~sk~ 114 (233)
.+|||.|........|=.....+.|+++......++
T Consensus 35 ~~Cvlay~~~~~~C~~f~~~~~~~v~~~~~~~~~~V 70 (94)
T smart00605 35 SNCVLAYGNSSETCYLFSYGTVLTVKKLSSSSGKKV 70 (94)
T ss_pred CceEEEecCCCCceEEEEcCCeEEEEEccCCCCcEE
Confidence 499999986556788888887788888876544444
Done!