Query psy5894
Match_columns 233
No_of_seqs 96 out of 98
Neff 3.4
Searched_HMMs 13730
Date Fri Aug 16 21:00:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5894.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5894hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3enba1 c.55.3.14 (A:1771-1989 56.7 2.9 0.00021 34.6 2.7 49 48-101 7-56 (219)
2 d1zunb2 b.44.1.1 (B:330-434) S 56.1 12 0.00085 26.4 5.7 83 1-91 13-96 (105)
3 d3e9oa1 c.55.3.14 (A:1835-2087 47.9 2.9 0.00021 35.4 1.3 46 51-101 18-64 (253)
4 d1o12a1 b.92.1.5 (A:1-43,A:332 36.1 7.8 0.00057 27.2 1.9 15 80-94 4-18 (76)
5 d1uura2 b.2.5.5 (A:360-576) ST 33.7 24 0.0018 28.7 4.8 77 65-149 12-91 (217)
6 d1ll8a_ d.110.3.5 (A:) N-termi 29.1 22 0.0016 23.4 3.2 37 78-114 7-43 (114)
7 d2ffga1 d.317.1.1 (A:2-79) Hyp 25.9 24 0.0018 24.7 3.1 21 79-99 34-54 (78)
8 d1v43a2 b.40.6.3 (A:304-373) H 24.3 15 0.0011 23.3 1.6 13 79-91 55-67 (70)
9 d1z8ma1 d.298.1.2 (A:1-88) Hyp 24.2 17 0.0012 25.1 1.9 33 68-100 47-84 (88)
10 d1mzka_ b.26.1.2 (A:) Kinase a 23.0 73 0.0053 22.3 5.4 22 78-99 51-72 (122)
11 d2awna1 b.40.6.3 (A:236-370) M 22.5 13 0.00093 25.6 1.0 18 80-99 115-132 (135)
No 1
>d3enba1 c.55.3.14 (A:1771-1989) Pre-mRNA-splicing factor 8, Prp8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=56.70 E-value=2.9 Score=34.63 Aligned_cols=49 Identities=20% Similarity=0.359 Sum_probs=34.6
Q ss_pred eEEecCCccEEEEeCCCCceeeEEecCCCCc-cceEEEEeCCCCcEEEeeeecce
Q psy5894 48 KLDVGESNQVTVTVPHGSRETVFKGSHKPYQ-KECVLIIDNVTGEITLEKLSNNI 101 (233)
Q Consensus 48 ~L~vg~~nqVTVtlPng~p~tvFkGs~kp~k-kECVLIfD~~TGeftLEKLsS~i 101 (233)
.+=|+..+-+.|++. ..|+|+..... --||+|||+.||..-|--++..+
T Consensus 7 ~~fVDDtnvYrvt~h-----kT~egn~~tkpiNG~ifI~NP~tGqLflKiihtSv 56 (219)
T d3enba1 7 IWFVDDTNVYRVTIH-----KTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSV 56 (219)
T ss_dssp EEEEECTTSSEEEEE-----ECTTSCEEEEEECEEEEEECTTTCEEEEEEECGGG
T ss_pred EEEEeCCceEEEEEE-----ecccCCceeccccceEEEEeCCCCcEEEEEEeehh
Confidence 334555555555554 56777776543 48999999999999998888653
No 2
>d1zunb2 b.44.1.1 (B:330-434) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain 3-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}
Probab=56.12 E-value=12 Score=26.41 Aligned_cols=83 Identities=16% Similarity=0.270 Sum_probs=52.7
Q ss_pred CCccCCCCCceeecccccccCCCCCCCceeeeeeccccCCCCCCCceeEEecCCccEEEEeCCCCceeeEEecCCCCc-c
Q psy5894 1 MADKLGLNPDIRELKLGSSFTNANKGSSFHTLRYDFKPASMDPNEVAKLDVGESNQVTVTVPHGSRETVFKGSHKPYQ-K 79 (233)
Q Consensus 1 mae~l~l~~~~y~L~LG~SF~~~~~~~~FHTLRYDFKPASVD~SkpG~L~vg~~nqVTVtlPng~p~tvFkGs~kp~k-k 79 (233)
|.+.--+....|.|++|..... ...-.|.|-.-+.+.....+-.|+.+.=..|++++- ....| =.+..++ -
T Consensus 13 m~~~pl~~g~~y~lk~~t~~~~----a~v~~i~~~id~~t~~~~~~~~l~~Ndi~~v~i~~~---~~i~~-d~y~~n~~~ 84 (105)
T d1zunb2 13 MAEEPMLPGKKYDIKRATSYVP----GSIASITHRVDVNTLEEGPASSLQLNEIGRVKVSLD---APIAL-DGYSSNRTT 84 (105)
T ss_dssp CCSSCBCTTCCEEEECSSCEEE----EEEEEEEEEECTTTCCCCCCSCBCTTCEEEEEEEEE---EEEEC-CCTTTCTTT
T ss_pred ecCCcCCCCCEEEEEEcccEEE----EEecceeEEEecCCcccccccccCCccEEEEEEEEC---Ccccc-CccccCcCc
Confidence 4544445677888888855443 455568888888888776666666655557777775 23444 2344443 3
Q ss_pred ceEEEEeCCCCc
Q psy5894 80 ECVLIIDNVTGE 91 (233)
Q Consensus 80 ECVLIfD~~TGe 91 (233)
-..+++|..||+
T Consensus 85 G~fiLiD~~~~~ 96 (105)
T d1zunb2 85 GAFIVIDRLTNG 96 (105)
T ss_dssp TEEEEECTTTCC
T ss_pred eeEEEEECCCCC
Confidence 677778877654
No 3
>d3e9oa1 c.55.3.14 (A:1835-2087) Pre-mRNA-splicing factor 8, Prp8 {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=47.94 E-value=2.9 Score=35.37 Aligned_cols=46 Identities=24% Similarity=0.485 Sum_probs=32.7
Q ss_pred ecCCccEEEEeCCCCceeeEEecCCCCc-cceEEEEeCCCCcEEEeeeecce
Q psy5894 51 VGESNQVTVTVPHGSRETVFKGSHKPYQ-KECVLIIDNVTGEITLEKLSNNI 101 (233)
Q Consensus 51 vg~~nqVTVtlPng~p~tvFkGs~kp~k-kECVLIfD~~TGeftLEKLsS~i 101 (233)
|+..+-+.|++. ..|+|+..... --||+|||+.||..-|-=++..+
T Consensus 18 VDDtnvYrvt~h-----kt~egn~~tkpiNG~ifIfNP~tGqLflKiiHtSv 64 (253)
T d3e9oa1 18 VDDTNVYRVTVH-----KTFEGNVATKAINGCIFTLNPKTGHLFLKIIHTSV 64 (253)
T ss_dssp EECTTSSEEEEE-----ECTTSCEEEEEECEEEEEECTTTCEEEEEEECGGG
T ss_pred EecCceEEEEEE-----ecccCCceeeeccceEEEEeCCCCcEEEEEEeehh
Confidence 555555555554 45666666432 48999999999999998887653
No 4
>d1o12a1 b.92.1.5 (A:1-43,A:332-364) N-acetylglucosamine-6-phosphate deacetylase, NagA {Thermotoga maritima [TaxId: 2336]}
Probab=36.14 E-value=7.8 Score=27.23 Aligned_cols=15 Identities=53% Similarity=0.700 Sum_probs=13.4
Q ss_pred ceEEEEeCCCCcEEE
Q psy5894 80 ECVLIIDNVTGEITL 94 (233)
Q Consensus 80 ECVLIfD~~TGeftL 94 (233)
|-|||.|+..||||=
T Consensus 4 E~VLIVDPidGEyTG 18 (76)
T d1o12a1 4 EKVLIVDPIDGEFTG 18 (76)
T ss_dssp EEEEEEETTTEEEEE
T ss_pred eeEEEEcCCCCcEee
Confidence 679999999999983
No 5
>d1uura2 b.2.5.5 (A:360-576) STAT homologue {Dictyostelium discoideum [TaxId: 44689]}
Probab=33.71 E-value=24 Score=28.72 Aligned_cols=77 Identities=12% Similarity=0.072 Sum_probs=46.1
Q ss_pred CceeeEEecCCCCccceEEEEeCCCCcEEEeeeecceeeeecccCCCCCCcccCCCCCCCcccc---ccccccccccccc
Q psy5894 65 SRETVFKGSHKPYQKECVLIIDNVTGEITLEKLSNNIQLKKTRTAPTNKTDTSHVMPSAIPLSR---LKKKTSGKANNNH 141 (233)
Q Consensus 65 ~p~tvFkGs~kp~kkECVLIfD~~TGeftLEKLsS~i~VKktR~~~~sk~~~~~~~~~~~p~~~---~~~~~~~r~~~~t 141 (233)
-|+++|+|..-.-..-||+|+-+...++.. .-..|+......++..-+.+.++++. ..-+.+.-+.=+-
T Consensus 12 fp~VIsk~K~l~e~~~vv~ll~G~~~~~~~--------~~pV~Atmi~es~~~sK~s~t~~iE~~~~~l~~~~~~A~f~i 83 (217)
T d1uura2 12 FPVVISKGKQLGENQLVVLVLTGARSNFHI--------NGPVKATMICDSHPTNKNNPTTPLEMDSQPIYPATLTAHFPL 83 (217)
T ss_dssp CSCEEETTCBCCTTTSEEEEECCSSCCEEE--------EEEEEEEEECSSCC-----CCCCEECCEECCBTTTTEEECCC
T ss_pred cceeeecccccCcceEEEEEEcccccccee--------cCceEEEEEEccCCCCCCCCCCcccccceecccccceEEeeE
Confidence 357899987776556899999888766654 13334433222222222344445544 3445566666678
Q ss_pred eeeccCCC
Q psy5894 142 KTKSGNNL 149 (233)
Q Consensus 142 kv~~g~~~ 149 (233)
|+..|.|+
T Consensus 84 Kfl~gTRk 91 (217)
T d1uura2 84 KFLAGTRK 91 (217)
T ss_dssp EECSCCSS
T ss_pred EEeccccc
Confidence 99999999
No 6
>d1ll8a_ d.110.3.5 (A:) N-terminal PAS domain of Pas kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.08 E-value=22 Score=23.39 Aligned_cols=37 Identities=14% Similarity=0.086 Sum_probs=21.8
Q ss_pred ccceEEEEeCCCCcEEEeeeecceeeeecccCCCCCC
Q psy5894 78 QKECVLIIDNVTGEITLEKLSNNIQLKKTRTAPTNKT 114 (233)
Q Consensus 78 kkECVLIfD~~TGeftLEKLsS~i~VKktR~~~~sk~ 114 (233)
--+||+|+|.++|.+..=-=..+-.+.+.|.+--.+.
T Consensus 7 ~n~AI~~id~~~G~I~~~N~a~~~l~Gy~~~el~g~~ 43 (114)
T d1ll8a_ 7 FNKAIFTVDAKTTEILVANDKACGLLGYSSQDLIGQK 43 (114)
T ss_dssp TTCEEEEEETTTCBEEEECTTHHHHHTCCTTTTTTSB
T ss_pred cCcEEEEEECCCCEEEEECHHHHHhhcCCHHHHcCCC
Confidence 3589999999998775311112223455666555544
No 7
>d2ffga1 d.317.1.1 (A:2-79) Hypothetical protein YkuJ {Bacillus subtilis [TaxId: 1423]}
Probab=25.86 E-value=24 Score=24.68 Aligned_cols=21 Identities=14% Similarity=0.164 Sum_probs=18.3
Q ss_pred cceEEEEeCCCCcEEEeeeec
Q psy5894 79 KECVLIIDNVTGEITLEKLSN 99 (233)
Q Consensus 79 kECVLIfD~~TGeftLEKLsS 99 (233)
.=|-.-||+.|++|+||.+..
T Consensus 34 ~~c~V~y~~~t~tf~l~~~~~ 54 (78)
T d2ffga1 34 KICSVKYFEKNQTFELTVFQK 54 (78)
T ss_dssp EEEEEEEETTTTEEEEEEEET
T ss_pred EEEEEEEecCCCeEEEEEecC
Confidence 469999999999999997753
No 8
>d1v43a2 b.40.6.3 (A:304-373) Hypothetical protein PH0022, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=24.26 E-value=15 Score=23.28 Aligned_cols=13 Identities=15% Similarity=0.271 Sum_probs=11.0
Q ss_pred cceEEEEeCCCCc
Q psy5894 79 KECVLIIDNVTGE 91 (233)
Q Consensus 79 kECVLIfD~~TGe 91 (233)
.+.+.+||.+||+
T Consensus 55 ~~~~~lFD~~tg~ 67 (70)
T d1v43a2 55 LDMIHVFDKDTEK 67 (70)
T ss_dssp GGGCEEEETTTCB
T ss_pred cccEEEEcchhcc
Confidence 3788999999985
No 9
>d1z8ma1 d.298.1.2 (A:1-88) Hypothetical protein HP0894 {Helicobacter pylori [TaxId: 210]}
Probab=24.21 E-value=17 Score=25.07 Aligned_cols=33 Identities=24% Similarity=0.476 Sum_probs=24.7
Q ss_pred eeEEecCCCC-----ccceEEEEeCCCCcEEEeeeecc
Q psy5894 68 TVFKGSHKPY-----QKECVLIIDNVTGEITLEKLSNN 100 (233)
Q Consensus 68 tvFkGs~kp~-----kkECVLIfD~~TGeftLEKLsS~ 100 (233)
+.-+|+...+ +-||+|||--+..++.|.++.+-
T Consensus 47 H~L~G~~~g~rechi~~D~llIy~~~~~~i~L~riGsH 84 (88)
T d1z8ma1 47 HALKGKWKPFRECHIKPDVLLVYLVKDDELILLRLGSH 84 (88)
T ss_dssp EECSGGGTTSEECCSSTTCEEEEEEETTEEEEEEEECT
T ss_pred ccccCcccCeeEEEEcCCEEEEEEEcCCEEEEEEecch
Confidence 4446766653 34999999988899999888764
No 10
>d1mzka_ b.26.1.2 (A:) Kinase associated protein phosphatase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=22.99 E-value=73 Score=22.25 Aligned_cols=22 Identities=9% Similarity=0.093 Sum_probs=19.2
Q ss_pred ccceEEEEeCCCCcEEEeeeec
Q psy5894 78 QKECVLIIDNVTGEITLEKLSN 99 (233)
Q Consensus 78 kkECVLIfD~~TGeftLEKLsS 99 (233)
..-|.|.||.+++.|.++-|.|
T Consensus 51 r~Ha~i~~~~~~~~~~v~DlgS 72 (122)
T d1mzka_ 51 GKHAQITWNSTKFKWELVDMGS 72 (122)
T ss_dssp SEEEEEEEETTTTEEEEEETTC
T ss_pred ccceEEEEeCCCCEEEEeeCCC
Confidence 4689999999999999999954
No 11
>d2awna1 b.40.6.3 (A:236-370) Maltose transport protein MalK, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=22.55 E-value=13 Score=25.57 Aligned_cols=18 Identities=17% Similarity=0.266 Sum_probs=12.8
Q ss_pred ceEEEEeCCCCcEEEeeeec
Q psy5894 80 ECVLIIDNVTGEITLEKLSN 99 (233)
Q Consensus 80 ECVLIfD~~TGeftLEKLsS 99 (233)
+.+.+||.+ |+ +++||+.
T Consensus 115 ~~~~lFd~~-G~-~~~rl~~ 132 (135)
T d2awna1 115 ERCHLFRED-GT-ACRRLHK 132 (135)
T ss_dssp GGCEEECTT-SB-BCCBCSC
T ss_pred hhEEEECCC-CC-EeccccC
Confidence 778899976 43 6777653
Done!