BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5895
(152 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8SX83|SPEN_DROME Protein split ends OS=Drosophila melanogaster GN=spen PE=1 SV=2
Length = 5560
Score = 191 bits (485), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 90/145 (62%), Positives = 110/145 (75%), Gaps = 4/145 (2%)
Query: 1 MHYVFGNHLLARDALPLAAEGGLTPPTPTLRIAQRMRLEQTQIDGVVRKMQTDGEHCMLL 60
MH+V GN +AR +LP E TP LRIAQRMRLEQTQ++GV +KMQ D EHCMLL
Sbjct: 5419 MHFVHGNPNVARASLPSLVETN----TPLLRIAQRMRLEQTQLEGVAKKMQVDKEHCMLL 5474
Query: 61 ALPCGRTEVDVVQQSAYLQSGFITYLQQKQAAGIVNIAAPGTQQAAYIVHVFPSCEFANN 120
ALPCGR DV+Q S LQ+GFITYLQQK AAGIVNI PG++QAAY+VH+FPSC+FAN
Sbjct: 5475 ALPCGRDHADVLQHSRNLQTGFITYLQQKMAAGIVNIPIPGSEQAAYVVHIFPSCDFANE 5534
Query: 121 SLAQIDAQLLKKVSELTYLVIIIAT 145
+L + L +V+EL +L+I+IAT
Sbjct: 5535 NLERAAPDLKNRVAELAHLLIVIAT 5559
>sp|Q96T58|MINT_HUMAN Msx2-interacting protein OS=Homo sapiens GN=SPEN PE=1 SV=1
Length = 3664
Score = 152 bits (385), Expect = 5e-37, Method: Composition-based stats.
Identities = 74/146 (50%), Positives = 109/146 (74%), Gaps = 7/146 (4%)
Query: 1 MHYVFGNHLLARDALPLAAEGGLTPPTPTLRIAQRMRLEQTQIDGVVRKMQTDGEHCMLL 60
+H+V GN++LA +LPL+ EGG P LRIAQRMRLE TQ++GV R+M + ++C+LL
Sbjct: 3524 LHFVSGNNVLAHRSLPLS-EGG-----PPLRIAQRMRLEATQLEGVARRMTVETDYCLLL 3577
Query: 61 ALPCGRTEVDVVQQSAYLQSGFITYLQQKQAAGIVNIAAPGTQQAAYIVHVFPSCEFANN 120
ALPCGR + DVV Q+ L++ FITYLQ KQAAGI+N+ PG+ Q AY++ +FP CEF+ +
Sbjct: 3578 ALPCGRDQEDVVSQTESLKAAFITYLQAKQAAGIINVPNPGSNQPAYVLQIFPPCEFSES 3637
Query: 121 SLAQIDAQLLKKVSELT-YLVIIIAT 145
L+++ LL +S ++ +L+I+IA+
Sbjct: 3638 HLSRLAPDLLASISNISPHLMIVIAS 3663
>sp|Q62504|MINT_MOUSE Msx2-interacting protein OS=Mus musculus GN=Spen PE=1 SV=2
Length = 3644
Score = 150 bits (380), Expect = 2e-36, Method: Composition-based stats.
Identities = 73/146 (50%), Positives = 109/146 (74%), Gaps = 7/146 (4%)
Query: 1 MHYVFGNHLLARDALPLAAEGGLTPPTPTLRIAQRMRLEQTQIDGVVRKMQTDGEHCMLL 60
+H+V GN++LA +LPL+ EGG P LRIAQRMRLE +Q++GV R+M + ++C+LL
Sbjct: 3504 LHFVSGNNVLAHRSLPLS-EGG-----PPLRIAQRMRLEASQLEGVARRMTVETDYCLLL 3557
Query: 61 ALPCGRTEVDVVQQSAYLQSGFITYLQQKQAAGIVNIAAPGTQQAAYIVHVFPSCEFANN 120
ALPCGR + DVV Q+ L++ FITYLQ KQAAGI+N+ PG+ Q AY++ +FP CEF+ +
Sbjct: 3558 ALPCGRDQEDVVSQTESLKAAFITYLQAKQAAGIINVPNPGSNQPAYVLQIFPPCEFSES 3617
Query: 121 SLAQIDAQLLKKVSELT-YLVIIIAT 145
L+++ LL +S ++ +L+I+IA+
Sbjct: 3618 HLSRLAPDLLASISNISPHLMIVIAS 3643
>sp|Q96T37|RBM15_HUMAN Putative RNA-binding protein 15 OS=Homo sapiens GN=RBM15 PE=1 SV=2
Length = 977
Score = 67.4 bits (163), Expect = 3e-11, Method: Composition-based stats.
Identities = 49/151 (32%), Positives = 75/151 (49%), Gaps = 17/151 (11%)
Query: 8 HLLARD---ALPLAAEGGLTPPTPTLRIAQRMRLEQTQIDGVVRKMQTDGE--HCMLLAL 62
HLL D A L EG L+I QR+RL+Q ++D V R+++ G + +LLA+
Sbjct: 804 HLLQGDLQVASSLLVEGSTGGKVAQLKITQRLRLDQPKLDEVTRRIKVAGPNGYAILLAV 863
Query: 63 PCGRTEVDVVQQSAYLQS--------GFITYLQQKQAAGIVNIAAPGTQ--QAAYIVHVF 112
P +A + ++YL+QKQAAG++++ G + + ++H F
Sbjct: 864 PGSSDSRSSSSSAASDTATSTQRPLRNLVSYLKQKQAAGVISLPVGGNKDKENTGVLHAF 923
Query: 113 PSCEFANNSLAQIDAQLLKKVSELTYLVIII 143
P CEF+ L L K SE YLV+II
Sbjct: 924 PPCEFSQQFLDSPAKALAK--SEEDYLVMII 952
>sp|Q6PHZ5|RB15B_MOUSE Putative RNA-binding protein 15B OS=Mus musculus GN=Rbm15b PE=1
SV=2
Length = 887
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 39/129 (30%), Positives = 73/129 (56%), Gaps = 12/129 (9%)
Query: 30 LRIAQRMRLEQTQIDGVVRKMQ--TDGEHCMLLALPC-----GRTEVDVVQQSAY--LQS 80
L+IAQR+RL+Q ++D V R+++ + + +LLA+ G + VV+ L
Sbjct: 760 LKIAQRLRLDQPKLDEVTRRIKQGSPNGYAVLLAIQSTPSGPGAEGMPVVEPGLQRRLLR 819
Query: 81 GFITYLQQKQAAGIVNIAAPGTQ--QAAYIVHVFPSCEFANNSLAQIDAQLLKKVSELTY 138
++YL+QKQAAG++++ G++ +++ FP C+F+ L Q + L K+ E
Sbjct: 820 NLVSYLKQKQAAGVISLPVGGSKGRDNTGMLYAFPPCDFSQQYL-QSALRTLGKLEEEHM 878
Query: 139 LVIIIATTA 147
+++I+ TA
Sbjct: 879 VIVIVRDTA 887
>sp|Q8NDT2|RB15B_HUMAN Putative RNA-binding protein 15B OS=Homo sapiens GN=RBM15B PE=1
SV=3
Length = 890
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 39/130 (30%), Positives = 73/130 (56%), Gaps = 14/130 (10%)
Query: 30 LRIAQRMRLEQTQIDGVVRKMQ--TDGEHCMLLALPC--------GRTEVDVVQQSAYLQ 79
L+IAQR+RL+Q ++D V R+++ + + +LLA G V+ Q L+
Sbjct: 763 LKIAQRLRLDQPKLDEVTRRIKQGSPNGYAVLLATQATPSGLGTEGMPTVEPGLQRRLLR 822
Query: 80 SGFITYLQQKQAAGIVNIAAPGTQ--QAAYIVHVFPSCEFANNSLAQIDAQLLKKVSELT 137
+ ++YL+QKQAAG++++ G++ +++ FP C+F+ L Q + L K+ E
Sbjct: 823 N-LVSYLKQKQAAGVISLPVGGSKGRDGTGMLYAFPPCDFSQQYL-QSALRTLGKLEEEH 880
Query: 138 YLVIIIATTA 147
+++I+ TA
Sbjct: 881 MVIVIVRDTA 890
>sp|A1KH25|Y945_MYCBP Putative S-adenosyl-L-methionine-dependent methyltransferase
BCG_0945c OS=Mycobacterium bovis (strain BCG / Pasteur
1173P2) GN=BCG_0945c PE=3 SV=1
Length = 325
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 70 DVVQQSAYLQSGFITYL----QQKQAAGIVNIAAPGTQQAAYIVHVFPSCEFA 118
D + SA++ G + YL QQ+ GI +A+PG+ A CEFA
Sbjct: 170 DANRPSAWIAEGLLVYLSAEAQQRLFIGIDTLASPGSHVAVEEATPLDPCEFA 222
>sp|P64748|Y917_MYCBO Putative S-adenosyl-L-methionine-dependent methyltransferase
Mb0917c OS=Mycobacterium bovis (strain ATCC BAA-935 /
AF2122/97) GN=Mb0917c PE=3 SV=1
Length = 325
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 70 DVVQQSAYLQSGFITYL----QQKQAAGIVNIAAPGTQQAAYIVHVFPSCEFA 118
D + SA++ G + YL QQ+ GI +A+PG+ A CEFA
Sbjct: 170 DANRPSAWIAEGLLVYLSAEAQQRLFIGIDTLASPGSHVAVEEATPLDPCEFA 222
>sp|A5U0T2|Y901_MYCTA Putative S-adenosyl-L-methionine-dependent methyltransferase
MRA_0901 OS=Mycobacterium tuberculosis (strain ATCC
25177 / H37Ra) GN=MRA_0901 PE=3 SV=1
Length = 325
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 70 DVVQQSAYLQSGFITYL----QQKQAAGIVNIAAPGTQQAAYIVHVFPSCEFA 118
D + SA++ G + YL QQ+ GI +A+PG+ A CEFA
Sbjct: 170 DANRPSAWIAEGLLVYLSAEAQQRLFIGIDTLASPGSHVAVEEATPLDPCEFA 222
>sp|P64747|Y893_MYCTU Putative S-adenosyl-L-methionine-dependent methyltransferase
Rv0893c/MT0917 OS=Mycobacterium tuberculosis GN=Rv0893c
PE=3 SV=1
Length = 325
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 70 DVVQQSAYLQSGFITYL----QQKQAAGIVNIAAPGTQQAAYIVHVFPSCEFA 118
D + SA++ G + YL QQ+ GI +A+PG+ A CEFA
Sbjct: 170 DANRPSAWIAEGLLVYLSAEAQQRLFIGIDTLASPGSHVAVEEATPLDPCEFA 222
>sp|A4T523|Y743_MYCGI Putative S-adenosyl-L-methionine-dependent methyltransferase
Mflv_0743 OS=Mycobacterium gilvum (strain PYR-GCK)
GN=Mflv_0743 PE=3 SV=1
Length = 309
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 67 TEVDVVQQSAYLQSGFITYL----QQKQAAGIVNIAAPGTQQAAYI--VHVFPSCEFANN 120
T D + +A+L G + YL Q + A I ++APG+Q AA VH E
Sbjct: 175 TGFDPARPTAWLAEGLLMYLPADAQDRLFAQITELSAPGSQVAAESMGVHAPDRRERMRE 234
Query: 121 SLAQIDAQLL---KKVSELTY 138
A I +Q+ ++ELTY
Sbjct: 235 RFASIASQIDIEPMDITELTY 255
>sp|Q9QXE2|DPOLL_MOUSE DNA polymerase lambda OS=Mus musculus GN=Poll PE=2 SV=1
Length = 573
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
Query: 48 RKMQTDGEHCMLLALPCGRTE-------VDVVQQSAYLQSGFITYL---QQKQAAGIVNI 97
R T G+ +L+ P GR+ +D ++Q +L ++ QQ++ G+ +
Sbjct: 418 RGKMTCGDVDVLITHPDGRSHRGIFSCLLDSLRQQGFLTDDLVSQEENGQQQKYLGVCRL 477
Query: 98 AAPGTQQAAYIVHVFPSCEFA 118
PG + + V P CEFA
Sbjct: 478 PGPGKRHRRLDIIVVPYCEFA 498
>sp|Q01514|GBP1_MOUSE Interferon-induced guanylate-binding protein 1 OS=Mus musculus
GN=Gbp1 PE=1 SV=1
Length = 589
Score = 30.8 bits (68), Expect = 3.5, Method: Composition-based stats.
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 3/103 (2%)
Query: 37 RLEQTQIDGVVRKMQTDGEHCM-LLALPCGRTEVDVVQQSAYLQSGFITYLQQKQAAGIV 95
+LE + V + M HC LL E +V Q + Y G+ +LQ+KQ
Sbjct: 385 QLEAKRDAFVKKNMDMSSAHCSDLLEGLFAHLEEEVKQGTFYKPGGYYLFLQRKQELEKK 444
Query: 96 NIAAPGT--QQAAYIVHVFPSCEFANNSLAQIDAQLLKKVSEL 136
I PG Q + F S E ++L ++D L +K ++
Sbjct: 445 YIQTPGKGLQAEVMLRKYFESKEDLADTLLKMDQSLTEKEKQI 487
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.133 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,032,316
Number of Sequences: 539616
Number of extensions: 1683245
Number of successful extensions: 4067
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 4052
Number of HSP's gapped (non-prelim): 23
length of query: 152
length of database: 191,569,459
effective HSP length: 107
effective length of query: 45
effective length of database: 133,830,547
effective search space: 6022374615
effective search space used: 6022374615
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)