Query psy5895
Match_columns 152
No_of_seqs 94 out of 96
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 21:01:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5895.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5895hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ow1_A Smart/HDAC1 associated 100.0 8E-61 2.7E-65 385.5 13.3 140 1-146 55-195 (195)
2 1wi9_A Protein C20ORF116 homol 31.8 9.6 0.00033 25.8 -0.1 16 76-91 6-21 (72)
3 2nwu_A UPF0201 protein SSO1042 27.8 11 0.00037 28.7 -0.4 41 88-128 89-131 (155)
4 2hnl_A Glutathione S-transfera 26.8 42 0.0014 24.9 2.8 39 81-121 4-42 (225)
5 3fst_A 5,10-methylenetetrahydr 21.3 44 0.0015 27.6 2.1 14 49-62 138-151 (304)
6 3c9g_A UPF0200/UPF0201 protein 21.1 22 0.00075 26.5 0.2 42 88-129 87-130 (142)
7 2qlw_A RHAU; mutarotase, isome 20.7 48 0.0017 24.9 2.0 56 6-61 17-86 (144)
8 4aez_B MAD2, mitotic spindle c 16.4 71 0.0024 25.0 2.2 31 118-148 60-92 (203)
9 2id1_A Hypothetical protein; a 16.3 1.8E+02 0.006 21.2 4.2 40 73-115 46-93 (130)
10 2rrl_A FLIK, flagellar HOOK-le 16.2 89 0.003 24.0 2.7 22 35-56 90-111 (169)
No 1
>1ow1_A Smart/HDAC1 associated repressor protein; beta-alpha-barrel, SPOC domain,, transcription; 1.80A {Homo sapiens} SCOP: b.131.1.3
Probab=100.00 E-value=8e-61 Score=385.48 Aligned_cols=140 Identities=52% Similarity=0.954 Sum_probs=131.9
Q ss_pred CceeeCCHHHHHhhcCCCcCCCCCCCCCceeeeeecCCCCCcchhhhhhcccCCCeEEEEEeccCCCcchhhhhHHHHHH
Q psy5895 1 MHYVFGNHLLARDALPLAAEGGLTPPTPTLRIAQRMRLEQTQIDGVVRKMQTDGEHCMLLALPCGRTEVDVVQQSAYLQS 80 (152)
Q Consensus 1 mH~l~Gn~~v~~~~L~~~~~g~~~~~~~~LrItQRlRLd~~~Ld~V~rri~~~~~~cilLAlp~~~~~~d~~~q~~~l~~ 80 (152)
||+|+||.+++.++|++. ++ .++|||+||||||++|||+|+|||+.+++||+|||+||+++.+|+.+|+++|++
T Consensus 55 mh~v~Gn~~l~~~~L~~~-~~-----~~~LRItQRmRLd~~qLe~V~rRi~~~~~~cilLAlp~~~~~~d~~~q~~~L~~ 128 (195)
T 1ow1_A 55 LHFVSGNNVLAHRSLPLS-EG-----GPPLRIAQRMRLEATQLEGVARRMTVETDYCLLLALPCGRDQEDVVSQTESLKA 128 (195)
T ss_dssp EEEEEECHHHHHHHSCCC---------CCEEECEEEECSHHHHHHHHHHTSSTTTEEEEEEEECCSSHHHHHHHHHHHHH
T ss_pred EEEEeCcHHHHHHhCCCC-CC-----CCceeeehhhccChHHHHHHHHHHhCCCCceEEEEecCCCCchhhHhhhhHHHH
Confidence 799999999999999764 32 389999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccceEEecCCCCCCCCceEEEEeCCChhHHHHHHHHhHHHHhhccC-CCcEEEEEEec
Q psy5895 81 GFITYLQQKQAAGIVNIAAPGTQQAAYIVHVFPSCEFANNSLAQIDAQLLKKVSE-LTYLVIIIATT 146 (152)
Q Consensus 81 ~lV~YLkqKqAAGIisl~~~~~~~~~~vlhiFPPCeFs~~~L~~~Ap~L~~~~~~-~~hLviVi~~~ 146 (152)
+||+||++||||||||++++|+++++||||||||||||++||+++||+|++.+.+ ++|||||||++
T Consensus 129 ~fV~YL~qKqAAGIisl~~~~s~~~~~vlhiFPPCeFs~~~L~~~AP~L~~~l~~~~~hLliVI~~~ 195 (195)
T 1ow1_A 129 AFITYLQAKQAAGIINVPNPGSNQPAYVLQIFPPCEFSESHLSRLAPDLLASISNISPHLMIVIASV 195 (195)
T ss_dssp HTHHHHHHHTEEEEEEECCTTCCSCCEEEEEECSSHHHHHHHHHHCHHHHHHHTTTSCCEEEEEEEC
T ss_pred HHHHHHHhCccceEEecCCCCCCCcceEEEEcCCcHHHHHHHHHHChHHHhhhccCCCeEEEEEEeC
Confidence 9999999999999999999999999999999999999999999999999998775 58999999986
No 2
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=31.80 E-value=9.6 Score=25.77 Aligned_cols=16 Identities=19% Similarity=0.521 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhhhccc
Q psy5895 76 AYLQSGFITYLQQKQA 91 (152)
Q Consensus 76 ~~l~~~lV~YLkqKqA 91 (152)
+.+++.||+|+|++..
T Consensus 6 ~~ll~~Fi~yIk~~Kv 21 (72)
T 1wi9_A 6 SGFLTEFINYIKKSKV 21 (72)
T ss_dssp CCHHHHHHHHHHHCSE
T ss_pred HHHHHHHHHHHHHcCe
Confidence 4567899999999874
No 3
>2nwu_A UPF0201 protein SSO1042; conserved hypothetical protein, sulfolobus solfataricus P2, structural genomics, PSI-2; 2.40A {Sulfolobus solfataricus} SCOP: d.77.1.2
Probab=27.78 E-value=11 Score=28.68 Aligned_cols=41 Identities=12% Similarity=0.244 Sum_probs=19.7
Q ss_pred hcccc--eEEecCCCCCCCCceEEEEeCCChhHHHHHHHHhHH
Q psy5895 88 QKQAA--GIVNIAAPGTQQAAYIVHVFPSCEFANNSLAQIDAQ 128 (152)
Q Consensus 88 qKqAA--GIisl~~~~~~~~~~vlhiFPPCeFs~~~L~~~Ap~ 128 (152)
.|||| |.|++..++...+-+++++==-.+=-.++++-+||.
T Consensus 89 ~KQaAy~G~v~~~d~d~espLg~I~V~I~~~~~~~~idwLaP~ 131 (155)
T 2nwu_A 89 HKQAAAVGVLSFVDSDKESPLGAIKFYIEYQNPKEIVDWLAPK 131 (155)
T ss_dssp CHHHHHTTCCCBC---------CEEEEEECSCHHHHHHHHSCC
T ss_pred EHHHHhCCCEEeccCCCCCCCCCEEEEEEeCCHHHHHHHhCCC
Confidence 58988 999998655223334444422111245566666665
No 4
>2hnl_A Glutathione S-transferase 1; prostaglandin synthase, river BLI onchocerca volvulus, immune modulation; HET: GSH; 2.00A {Onchocerca volvulus}
Probab=26.78 E-value=42 Score=24.86 Aligned_cols=39 Identities=10% Similarity=0.025 Sum_probs=14.3
Q ss_pred HHHHHhhhcccceEEecCCCCCCCCceEEEEeCCChhHHHH
Q psy5895 81 GFITYLQQKQAAGIVNIAAPGTQQAAYIVHVFPSCEFANNS 121 (152)
Q Consensus 81 ~lV~YLkqKqAAGIisl~~~~~~~~~~vlhiFPPCeFs~~~ 121 (152)
|...|+.-++|+.+-+.-.+.. +...||.||.|.|+..-
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~m--~~~~Ly~~~~s~~~~~v 42 (225)
T 2hnl_A 4 NANQAITSENSIKPKGKLQPQM--EKYTLTYFNGRGRAEVI 42 (225)
T ss_dssp --------------------CC--CCEEEEEESSSGGGHHH
T ss_pred cchhhhhhhhHHHHHhhccccC--CCeEEEEcCCCCchHHH
Confidence 5667888888877644322222 35899999999998753
No 5
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=21.31 E-value=44 Score=27.56 Aligned_cols=14 Identities=7% Similarity=0.062 Sum_probs=8.5
Q ss_pred hcccCCCeEEEEEe
Q psy5895 49 KMQTDGEHCMLLAL 62 (152)
Q Consensus 49 ri~~~~~~cilLAl 62 (152)
-|+..+++|+-.|.
T Consensus 138 ~ir~~~~f~IgvA~ 151 (304)
T 3fst_A 138 LLKEVADFDISVAA 151 (304)
T ss_dssp HHHHHCCCEEEEEE
T ss_pred HHHHcCCCeEEEEe
Confidence 34444688886664
No 6
>3c9g_A UPF0200/UPF0201 protein AF_1395; uncharacterized UPF0201 protein AF_135, structural genomics, PSI-II, dimer; 2.30A {Archaeoglobus fulgidus dsm 4304}
Probab=21.14 E-value=22 Score=26.48 Aligned_cols=42 Identities=17% Similarity=0.038 Sum_probs=24.0
Q ss_pred hcccc--eEEecCCCCCCCCceEEEEeCCChhHHHHHHHHhHHH
Q psy5895 88 QKQAA--GIVNIAAPGTQQAAYIVHVFPSCEFANNSLAQIDAQL 129 (152)
Q Consensus 88 qKqAA--GIisl~~~~~~~~~~vlhiFPPCeFs~~~L~~~Ap~L 129 (152)
.|||| |.|++..+++.=..-.+.|-=+.+=-.++++-+||..
T Consensus 87 dKQaAy~G~v~~~d~dspLd~I~v~i~~~~~~~~~~idwlaP~T 130 (142)
T 3c9g_A 87 NKQTATVSRINFCDENAVLSPIKVTFRLNNIPFSRFLDYIAPET 130 (142)
T ss_dssp CHHHHTTTCCCBCCTTCC-CCEEEEEEESSSCHHHHHHHHSCST
T ss_pred EhHHHhCCCEEeccCCCCCCCEEEEEEeCCCCHHHHHHHhCCCC
Confidence 58877 9999996653211233333223333566777777763
No 7
>2qlw_A RHAU; mutarotase, isomerase; HET: MSE; 1.60A {Rhizobium leguminosarum BV} PDB: 2qlx_A*
Probab=20.67 E-value=48 Score=24.85 Aligned_cols=56 Identities=13% Similarity=0.118 Sum_probs=25.8
Q ss_pred CCHHHHHhhcCCC-cCCCCCCCCCceeeeeecCCCCCcchhhhhh-----------ccc--CCCeEEEEE
Q psy5895 6 GNHLLARDALPLA-AEGGLTPPTPTLRIAQRMRLEQTQIDGVVRK-----------MQT--DGEHCMLLA 61 (152)
Q Consensus 6 Gn~~v~~~~L~~~-~~g~~~~~~~~LrItQRlRLd~~~Ld~V~rr-----------i~~--~~~~cilLA 61 (152)
|-..++++...++ .|-=..+..+.-|+++.|+|.+..++|=.+| |+. -.+|.|.+-
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~MkR~af~m~Lkp~~~eEYk~~Ha~VWPEv~~~Lk~aGI~nYSIfl~ 86 (144)
T 2qlw_A 17 GGQQMGRDLYDDDDKDRWGSGDMTLEKHAFKMQLNPGMEAEYRKRHDEIWPELVDLLHQSGASDYSIHLD 86 (144)
T ss_dssp --------------------CCCCEEEEEEEEEBCTTCHHHHHHHHHTCCHHHHHHHHHHTCEEEEEEEE
T ss_pred hhHHHHHHHhcccchhhhccCCccceEEEEEEEcCchHHHHHHHHHHhCCHHHHHHHHHcCCeEEEEEEE
Confidence 4455666666541 1111123467789999999999998764433 221 247777766
No 8
>4aez_B MAD2, mitotic spindle checkpoint component MAD2; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=16.40 E-value=71 Score=24.99 Aligned_cols=31 Identities=19% Similarity=0.324 Sum_probs=21.8
Q ss_pred HHHHHHHHhHHHHhhccC--CCcEEEEEEeccC
Q psy5895 118 ANNSLAQIDAQLLKKVSE--LTYLVIIIATTAN 148 (152)
Q Consensus 118 s~~~L~~~Ap~L~~~~~~--~~hLviVi~~~~~ 148 (152)
-++|++.+.-++...+.+ ...+++||.+..+
T Consensus 60 l~~YI~~~l~~v~~wL~~g~v~klvlvI~~~~t 92 (203)
T 4aez_B 60 VKTYIRKIVSQLHKWMFAKKIQKLILVITSKCS 92 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEEEEEETTT
T ss_pred HHHHHHHHHHHHHHHHHhCCceEEEEEEEcCCC
Confidence 467777777777666643 4678888887653
No 9
>2id1_A Hypothetical protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.00A {Chromobacterium violaceum} SCOP: d.218.1.12
Probab=16.33 E-value=1.8e+02 Score=21.24 Aligned_cols=40 Identities=23% Similarity=0.360 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHhhhcccceEEecCCCCCCC--------CceEEEEeCCC
Q psy5895 73 QQSAYLQSGFITYLQQKQAAGIVNIAAPGTQQ--------AAYIVHVFPSC 115 (152)
Q Consensus 73 ~q~~~l~~~lV~YLkqKqAAGIisl~~~~~~~--------~~~vlhiFPPC 115 (152)
.|-+.+-.++...||+ +|+-.+..+|.+. ..-|||+|=|=
T Consensus 46 rqv~Aiad~v~~~lk~---~g~~~~~~EG~~~~~WvLlD~GdVvVHIf~~e 93 (130)
T 2id1_A 46 RQVKALANSVQVKLKE---AGVDIVGSEGHESGEWVLVDAGDVVVHVMLPA 93 (130)
T ss_dssp HHHHHHHHHHHHHHHH---TTCCCCBCCSTTTSSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHH---cCCcCccccCCCCCCEEEEecCCEEEEcCCHH
Confidence 4556667788888874 4765555555544 35789999763
No 10
>2rrl_A FLIK, flagellar HOOK-length control protein; FLHB, bacterial flagella motor, P transport; NMR {Salmonella typhimurium}
Probab=16.18 E-value=89 Score=23.95 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=18.7
Q ss_pred ecCCCCCcchhhhhhcccCCCe
Q psy5895 35 RMRLEQTQIDGVVRKMQTDGEH 56 (152)
Q Consensus 35 RlRLd~~~Ld~V~rri~~~~~~ 56 (152)
++|||++.|-.|.=||+..+|-
T Consensus 90 ~IrL~PpeLG~l~V~l~~~~~q 111 (169)
T 2rrl_A 90 QLRLHPEELGQVHISLKLDDNQ 111 (169)
T ss_dssp EECCSSGGGCCEEEEEEEETTE
T ss_pred EEEECccccCcEEEEEEEECCE
Confidence 4899999999999999876664
Done!