RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5895
(152 letters)
>gnl|CDD|219549 pfam07744, SPOC, SPOC domain. The SPOC (Spen paralogue and
orthologue C-terminal) domain is involved in
developmental signalling.
Length = 109
Score = 68.9 bits (169), Expect = 5e-16
Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 22/114 (19%)
Query: 1 MHYVFGNHLLARDALPLAAEGGLTPPTPTLRIAQRMRLEQTQIDGVVRKMQTDGE-HCML 59
H V G+ L LPL R+ R RL+ +Q++ +RK++ ++
Sbjct: 17 AHLVSGDEKLVNSLLPL-------------RLEIRGRLDLSQVEKYLRKLRKSSTKAVVV 63
Query: 60 LALPCGRTEVDVVQQSAYLQSGFITYLQQKQAAGIVNIAAPGTQQAAYIVHVFP 113
LAL D A I YLQ KQ AG+ + PG+Q +++ P
Sbjct: 64 LAL-----SPDSESDRAAFDE-LIDYLQSKQRAGVAKVGDPGSQ--VKDLYLIP 109
>gnl|CDD|222179 pfam13501, SoxY, Sulfur oxidation protein SoxY. This domain is
found in the sulfur oxidation protein SoxY. It is
closely related to the Desulfoferrodoxin family
pfam01880. Dissimilatory oxidation of thiosulfate is
carried out by the ubiquitous sulfur-oxidizing (Sox)
multi-enzyme system. In this system, SoxY plays a key
role, functioning as the sulfur substrate-binding
protein that offers its sulfur substrate, which is
covalently bound to a conserved C-terminal cysteine, to
another oxidizing Sox enzyme. The structure of this
domain shows an Ig-like fold.
Length = 110
Score = 28.3 bits (64), Expect = 0.91
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 16 PLAAEGGLTPPTPTLRIAQRMRLEQTQ 42
PLAA LTP ++ R+R+ QT
Sbjct: 57 PLAATFELTPAGGKPYVSTRIRMAQTS 83
>gnl|CDD|236738 PRK10701, PRK10701, DNA-binding transcriptional regulator RstA;
Provisional.
Length = 240
Score = 28.1 bits (63), Expect = 1.6
Identities = 15/55 (27%), Positives = 20/55 (36%), Gaps = 4/55 (7%)
Query: 9 LLARDALPL----AAEGGLTPPTPTLRIAQRMRLEQTQIDGVVRKMQTDGEHCML 59
LLAR L L A +L + + ID V R++ GE L
Sbjct: 108 LLARLRLHLRQNEQATQTKGLQETSLTPYKALHFGTLTIDPVNRQVTLAGEEISL 162
>gnl|CDD|239260 cd02962, TMX2, TMX2 family; composed of proteins similar to human
TMX2, a 372-amino acid TRX-related transmembrane
protein, identified and characterized through the
cloning of its cDNA from a human fetal library. It
contains a TRX domain but the redox active CXXC motif
is replaced with SXXC. Sequence analysis predicts that
TMX2 may be a Type I membrane protein, with its
C-terminal half protruding on the luminal side of the
endoplasmic reticulum (ER). In addition to the TRX
domain, transmembrane region and ER-retention signal,
TMX2 also contains a Myb DNA-binding domain repeat
signature and a dileucine motif in the tail.
Length = 152
Score = 27.7 bits (62), Expect = 2.0
Identities = 7/34 (20%), Positives = 11/34 (32%), Gaps = 8/34 (23%)
Query: 57 CMLLALPCGRTEVDVVQQSAYLQSGFITYLQQKQ 90
C+++ L Q Y+ I Y K
Sbjct: 12 CIVVYLLA--------PQPLYMGPEHIKYFTPKT 37
>gnl|CDD|165707 PLN00139, PLN00139, hypothetical protein; Provisional.
Length = 320
Score = 28.0 bits (62), Expect = 2.1
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 20 EGGLTPPTPTLRIAQRMRLEQTQIDGVVRKMQTDG 54
EGG TP P+ R+ +RM LE + V +++ G
Sbjct: 139 EGGQTPFVPSFRVTERM-LE--EFPEAVEEVEAKG 170
>gnl|CDD|129223 TIGR00117, acnB, aconitate hydratase 2. Aconitate hydratase
(aconitase) is an enzyme of the TCA cycle. This model
describes aconitase 2, AcnB, which has weak similarity
to aconitase 1. It is found almost exclusively in the
Proteobacteria [Energy metabolism, TCA cycle].
Length = 844
Score = 27.6 bits (61), Expect = 3.7
Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 20/123 (16%)
Query: 18 AAEGGLTPPTPTLRIAQRMRLEQTQIDGVVRKMQTD--GEHCMLLALPCGRTEVDVVQQS 75
AAEG PP P L Q+ +V ++ GE LL L R V ++
Sbjct: 13 AAEG--IPPLP---------LNANQMAALVELLKNPPAGEEEFLLDLLTNRVPPGV-DEA 60
Query: 76 AYLQSGFITYLQQKQA-----AGIVNIAAPGTQQAAYIVH-VFPSCEFANNSLAQIDAQL 129
AY+++GF+ + + +A + I GT Q Y VH + + + + ++A I A+
Sbjct: 61 AYVKAGFLAAIAKGEAKCPLISPEKAIELLGTMQGGYNVHPLIDALDSQDANIAPIAAKA 120
Query: 130 LKK 132
L
Sbjct: 121 LSH 123
>gnl|CDD|217322 pfam03022, MRJP, Major royal jelly protein. Royal jelly is the
food of queen bee larvae, and is responsible for the
high reproductive ability of the queen. Major royal
jelly proteins make up around 90% of larval jelly
proteins. This family also the sequence-related yellow
protein of drosophila which controls pigmentation of the
adult cuticle and larval mouth parts.
Length = 285
Score = 26.9 bits (60), Expect = 4.9
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
Query: 92 AGIVNIAAPGTQQAAYIVHVFPSCEFANNSLAQ---IDAQLLKKVSELTYLVIIIATTAN 148
+GIVN P Q + VF + A + L + + A + K S L LV+ +
Sbjct: 19 SGIVNTLQPPKQICPPKLLVF---DLATDKLLKRFELPADVAKGNSRLVNLVVDVGDDTC 75
Query: 149 SATV 152
T
Sbjct: 76 DDTF 79
>gnl|CDD|206649 cd01850, CDC_Septin, CDC/Septin GTPase family. Septins are a
conserved family of GTP-binding proteins associated with
diverse processes in dividing and non-dividing cells.
They were first discovered in the budding yeast S.
cerevisiae as a set of genes (CDC3, CDC10, CDC11 and
CDC12) required for normal bud morphology. Septins are
also present in metazoan cells, where they are required
for cytokinesis in some systems, and implicated in a
variety of other processes involving organization of the
cell cortex and exocytosis. In humans, 12 septin genes
generate dozens of polypeptides, many of which comprise
heterooligomeric complexes. Since septin mutants are
commonly defective in cytokinesis and formation of the
neck formation of the neck filaments/septin rings,
septins have been considered to be the primary
constituents of the neck filaments. Septins belong to
the GTPase superfamily for their conserved GTPase motifs
and enzymatic activities.
Length = 275
Score = 26.4 bits (59), Expect = 7.1
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 120 NSLAQIDAQLLKKVSELTYLVIIIA 144
+ L +D + +KK+S+ ++ +IA
Sbjct: 126 HGLKPLDIEFMKKLSKKVNIIPVIA 150
>gnl|CDD|181896 PRK09482, PRK09482, flap endonuclease-like protein; Provisional.
Length = 256
Score = 26.0 bits (58), Expect = 9.6
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 94 IVNIAAPGTQQAAYIVHVFPSCEFANNSLAQIDAQLLKKVSE 135
I +A G + AA +++ F S E SL + + KK+ E
Sbjct: 184 IPGVAGIGPKSAAELLNQFRSLENIYESLDALPEKWRKKLEE 225
>gnl|CDD|223891 COG0821, gcpE, 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate
synthase [Lipid metabolism].
Length = 361
Score = 26.0 bits (58), Expect = 9.8
Identities = 19/94 (20%), Positives = 31/94 (32%), Gaps = 18/94 (19%)
Query: 58 MLLALP-CGRTEVDVVQQSAYLQSGFITYLQQKQAA--G-IVN-----------IAAPGT 102
++A P CGRTE DV+Q ++ + A G +VN IA G
Sbjct: 260 EVIACPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVNGPGEAKHADIGIAGGGK 319
Query: 103 QQAAYIVHVFPSCEFANNSLAQIDAQLLKKVSEL 136
V + + + +L +
Sbjct: 320 GSGPVFVKGEIIKKLPEEDIVE---ELEALIEAY 350
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.133 0.380
Gapped
Lambda K H
0.267 0.0815 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,620,409
Number of extensions: 670796
Number of successful extensions: 481
Number of sequences better than 10.0: 1
Number of HSP's gapped: 481
Number of HSP's successfully gapped: 20
Length of query: 152
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 64
Effective length of database: 7,034,450
Effective search space: 450204800
Effective search space used: 450204800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (24.8 bits)