RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy5895
         (152 letters)



>1ow1_A Smart/HDAC1 associated repressor protein; beta-alpha-barrel, SPOC
           domain,, transcription; 1.80A {Homo sapiens} SCOP:
           b.131.1.3
          Length = 195

 Score =  171 bits (434), Expect = 3e-55
 Identities = 72/146 (49%), Positives = 106/146 (72%), Gaps = 7/146 (4%)

Query: 1   MHYVFGNHLLARDALPLAAEGGLTPPTPTLRIAQRMRLEQTQIDGVVRKMQTDGEHCMLL 60
           +H+V GN++LA  +LPL+  G      P LRIAQRMRLE TQ++GV R+M  + ++C+LL
Sbjct: 55  LHFVSGNNVLAHRSLPLSEGG------PPLRIAQRMRLEATQLEGVARRMTVETDYCLLL 108

Query: 61  ALPCGRTEVDVVQQSAYLQSGFITYLQQKQAAGIVNIAAPGTQQAAYIVHVFPSCEFANN 120
           ALPCGR + DVV Q+  L++ FITYLQ KQAAGI+N+  PG+ Q AY++ +FP CEF+ +
Sbjct: 109 ALPCGRDQEDVVSQTESLKAAFITYLQAKQAAGIINVPNPGSNQPAYVLQIFPPCEFSES 168

Query: 121 SLAQIDAQLLKKVSEL-TYLVIIIAT 145
            L+++   LL  +S +  +L+I+IA+
Sbjct: 169 HLSRLAPDLLASISNISPHLMIVIAS 194


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 50.8 bits (121), Expect = 3e-08
 Identities = 33/143 (23%), Positives = 58/143 (40%), Gaps = 23/143 (16%)

Query: 2   HYVFGNHLLARDALPLAAEGGLTPPTPTLRIAQRMRLEQTQIDGVVRKMQT---DGEHCM 58
           +  + N  L    L  + E     P+P L I+    L Q Q+   V K  +    G+  +
Sbjct: 311 YEAYPNTSLPPSILEDSLENNEGVPSPMLSIS---NLTQEQVQDYVNKTNSHLPAGKQ-V 366

Query: 59  LLALPCGRTEVDVVQQSAYLQS--GFITYLQQKQAAGIVNIA-APGTQQAAYIVHVF-P- 113
            ++L  G   + VV  S   QS  G    L++ +A   ++ +  P +++     + F P 
Sbjct: 367 EISLVNGAKNL-VV--SGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPV 423

Query: 114 SCEFANNSLAQIDAQLLKKVSEL 136
           +  F  +S       LL   S+L
Sbjct: 424 ASPF--HS------HLLVPASDL 438



 Score = 39.6 bits (92), Expect = 2e-04
 Identities = 15/100 (15%), Positives = 31/100 (31%), Gaps = 21/100 (21%)

Query: 17   LAAEGGLTPPTPTLRI-AQRMRLEQTQIDGVVRKMQTDGEHCMLLALP------CGRTEV 69
            LA+   +      + +   R    Q     V R       + M+   P        +  +
Sbjct: 1770 LASLADVMSIESLVEVVFYRGMTMQVA---VPRDELGRSNYGMIAINPGRVAASFSQEAL 1826

Query: 70   DVVQQSAYLQSGFITYLQQKQAAGIVNIAAPGTQQAAYIV 109
              V +    ++G++  ++      IVN      Q   Y+ 
Sbjct: 1827 QYVVERVGKRTGWL--VE------IVNYNVENQQ---YVA 1855


>3ico_A 6PGL, 6-phosphogluconolactonase; ssgcid, infectious disease, niaid,
           hydrolase, structural genomics; 2.15A {Mycobacterium
           tuberculosis}
          Length = 268

 Score = 26.5 bits (59), Expect = 4.1
 Identities = 4/41 (9%), Positives = 12/41 (29%)

Query: 92  AGIVNIAAPGTQQAAYIVHVFPSCEFANNSLAQIDAQLLKK 132
            G +     G    +  + +FP  +    +  +     +  
Sbjct: 9   MGTLEAQTQGPGSMSSSIEIFPDSDILVAAAGKRLVGAIGA 49


>4efi_A 3-oxoacyl-(acyl-carrier protein) synthase; structural genomics,
           seattle structural genomics center for infectious
           disease, ssgcid; 1.35A {Burkholderia xenovorans}
          Length = 354

 Score = 26.0 bits (58), Expect = 5.1
 Identities = 9/53 (16%), Positives = 15/53 (28%), Gaps = 1/53 (1%)

Query: 38  LEQTQIDGVVR-KMQTDGEHCMLLALPCGRTEVDVVQQSAYLQSGFITYLQQK 89
           LE +  D      +  DG+    L +P G  +         +       L   
Sbjct: 182 LETSNGDAAAHFIIGADGKGARNLIVPSGGFKPYDAAADERMAGKSPECLFMD 234


>2y0f_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; oxidoreductase,
           isoprenoid biosynthesis, non-mevalonate PATH; 2.50A
           {Thermus thermophilus}
          Length = 406

 Score = 25.3 bits (56), Expect = 8.9
 Identities = 6/13 (46%), Positives = 7/13 (53%)

Query: 64  CGRTEVDVVQQSA 76
           CGRT     Q+ A
Sbjct: 300 CGRTTSTFFQELA 312


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.321    0.133    0.380 

Gapped
Lambda     K      H
   0.267   0.0805    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,244,853
Number of extensions: 123079
Number of successful extensions: 234
Number of sequences better than 10.0: 1
Number of HSP's gapped: 233
Number of HSP's successfully gapped: 10
Length of query: 152
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 67
Effective length of database: 4,328,508
Effective search space: 290010036
Effective search space used: 290010036
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.0 bits)