RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5895
         (152 letters)



>d1ow1a_ b.131.1.3 (A:) SMART/HDAC1 associated repressor protein,
           SHARP {Human (Homo sapiens) [TaxId: 9606]}
          Length = 170

 Score =  170 bits (433), Expect = 8e-56
 Identities = 71/146 (48%), Positives = 105/146 (71%), Gaps = 7/146 (4%)

Query: 1   MHYVFGNHLLARDALPLAAEGGLTPPTPTLRIAQRMRLEQTQIDGVVRKMQTDGEHCMLL 60
           +H+V GN++LA  +LPL+         P LRIAQRMRLE TQ++GV R+M  + ++C+LL
Sbjct: 30  LHFVSGNNVLAHRSLPLS------EGGPPLRIAQRMRLEATQLEGVARRMTVETDYCLLL 83

Query: 61  ALPCGRTEVDVVQQSAYLQSGFITYLQQKQAAGIVNIAAPGTQQAAYIVHVFPSCEFANN 120
           ALPCGR + DVV Q+  L++ FITYLQ KQAAGI+N+  PG+ Q AY++ +FP CEF+ +
Sbjct: 84  ALPCGRDQEDVVSQTESLKAAFITYLQAKQAAGIINVPNPGSNQPAYVLQIFPPCEFSES 143

Query: 121 SLAQIDAQLLKKVSEL-TYLVIIIAT 145
            L+++   LL  +S +  +L+I+IA+
Sbjct: 144 HLSRLAPDLLASISNISPHLMIVIAS 169


>d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation
          factor SelB {Moorella thermoacetica [TaxId: 1525]}
          Length = 64

 Score = 26.2 bits (58), Expect = 0.55
 Identities = 7/47 (14%), Positives = 20/47 (42%), Gaps = 3/47 (6%)

Query: 10 LARDALPLAAEGGLTPPTPTLR-IAQRMRLEQTQIDGVVRKMQTDGE 55
          L +D           P  P+ + +A    L+ ++++ ++  +  +G 
Sbjct: 8  LLKDLEDKYRVSRWQP--PSFKEVAGSFNLDPSELEELLHYLVREGV 52


>d7reqa1 c.1.19.1 (A:4-560) Methylmalonyl-CoA mutase alpha subunit,
           domain 1 {Propionibacterium freudenreichii, subsp.
           shermanii [TaxId: 1744]}
          Length = 557

 Score = 24.3 bits (52), Expect = 7.8
 Identities = 11/94 (11%), Positives = 28/94 (29%), Gaps = 7/94 (7%)

Query: 17  LAAEGGLTPPTPTLRIAQRMRLEQTQIDGVVRKMQTDGEHCMLLALPCGRTEVDVVQQSA 76
           +     + PP P++RI   +    +        +   G H                 + A
Sbjct: 202 MVRNTYIYPPQPSMRIISEIFAYTSANMPKWNSISISGYHMQ-------EAGATADIEMA 254

Query: 77  YLQSGFITYLQQKQAAGIVNIAAPGTQQAAYIVH 110
           Y  +  + Y++  ++ G+            + + 
Sbjct: 255 YTLADGVDYIRAGESVGLNVDQFAPRLSFFWGIG 288


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.133    0.380 

Gapped
Lambda     K      H
   0.267   0.0506    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 520,712
Number of extensions: 20886
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 5
Length of query: 152
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 74
Effective length of database: 1,336,656
Effective search space: 98912544
Effective search space used: 98912544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.2 bits)