BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5899
(201 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4EQE|A Chain A, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Lys-Ams
pdb|4EQE|B Chain B, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Lys-Ams
pdb|4EQG|A Chain A, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Ala-Ams
pdb|4EQG|B Chain B, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Ala-Ams
pdb|4EQH|A Chain A, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Trp-Ams
pdb|4EQH|B Chain B, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Trp-Ams
Length = 128
Score = 124 bits (311), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 60/119 (50%), Positives = 78/119 (65%), Gaps = 1/119 (0%)
Query: 84 TQKLKHRNNGLFDKIVRKEVPCDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAA 143
Q + + +F KI+RKE+P + EDD C+AF DI+PQAP HFLV+PKK I +S+A
Sbjct: 10 AQVARPGGDTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAE 69
Query: 144 DEDAKILGHLMIXXXX-XXXXXLIRNYRVVVNNGWEAVQFSGHLHLHVLGGRPLHWPPG 201
D+D +LGHLMI L + YR+VVN G + Q H+HLHVLGGR +HWPPG
Sbjct: 70 DDDESLLGHLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMHWPPG 128
>pdb|3TW2|A Chain A, High Resolution Structure Of Human Histidine Triad
Nucleotide-binding Protein 1 (hhint1)/amp Complex In A
Monoclinic Space Group
pdb|3TW2|B Chain B, High Resolution Structure Of Human Histidine Triad
Nucleotide-binding Protein 1 (hhint1)/amp Complex In A
Monoclinic Space Group
Length = 126
Score = 124 bits (310), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 60/119 (50%), Positives = 78/119 (65%), Gaps = 1/119 (0%)
Query: 84 TQKLKHRNNGLFDKIVRKEVPCDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAA 143
Q + + +F KI+RKE+P + EDD C+AF DI+PQAP HFLV+PKK I +S+A
Sbjct: 8 AQVARPGGDTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAE 67
Query: 144 DEDAKILGHLMIXXXX-XXXXXLIRNYRVVVNNGWEAVQFSGHLHLHVLGGRPLHWPPG 201
D+D +LGHLMI L + YR+VVN G + Q H+HLHVLGGR +HWPPG
Sbjct: 68 DDDESLLGHLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMHWPPG 126
>pdb|1KPA|A Chain A, Pkci-1-Zinc
pdb|1KPA|B Chain B, Pkci-1-Zinc
pdb|1KPC|A Chain A, Pkci-1-Apo+zinc
pdb|1KPC|B Chain B, Pkci-1-Apo+zinc
pdb|1KPC|C Chain C, Pkci-1-Apo+zinc
pdb|1KPC|D Chain D, Pkci-1-Apo+zinc
pdb|1KPE|A Chain A, Pkci-Transition State Analog
pdb|1KPF|A Chain A, Pkci-Substrate Analog
pdb|1AV5|A Chain A, Pkci-Substrate Analog
pdb|1AV5|B Chain B, Pkci-Substrate Analog
pdb|1KPE|B Chain B, Pkci-Transition State Analog
Length = 126
Score = 124 bits (310), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 60/119 (50%), Positives = 78/119 (65%), Gaps = 1/119 (0%)
Query: 84 TQKLKHRNNGLFDKIVRKEVPCDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAA 143
Q + + +F KI+RKE+P + EDD C+AF DI+PQAP HFLV+PKK I +S+A
Sbjct: 8 AQVARPGGDTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAE 67
Query: 144 DEDAKILGHLMIXXXX-XXXXXLIRNYRVVVNNGWEAVQFSGHLHLHVLGGRPLHWPPG 201
D+D +LGHLMI L + YR+VVN G + Q H+HLHVLGGR +HWPPG
Sbjct: 68 DDDESLLGHLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMHWPPG 126
>pdb|1KPB|A Chain A, Pkci-1-Apo
pdb|1KPB|B Chain B, Pkci-1-Apo
Length = 125
Score = 124 bits (310), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 60/119 (50%), Positives = 78/119 (65%), Gaps = 1/119 (0%)
Query: 84 TQKLKHRNNGLFDKIVRKEVPCDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAA 143
Q + + +F KI+RKE+P + EDD C+AF DI+PQAP HFLV+PKK I +S+A
Sbjct: 7 AQVARPGGDTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAE 66
Query: 144 DEDAKILGHLMIXXXX-XXXXXLIRNYRVVVNNGWEAVQFSGHLHLHVLGGRPLHWPPG 201
D+D +LGHLMI L + YR+VVN G + Q H+HLHVLGGR +HWPPG
Sbjct: 67 DDDESLLGHLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMHWPPG 125
>pdb|3O1X|A Chain A, High Resolution Crystal Structure Of Histidine Triad
Nucleotide- Binding Protein 1 (Hint1) C84a Mutant From
Rabbit Complexed With Adenosine
Length = 126
Score = 121 bits (304), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/119 (49%), Positives = 76/119 (63%), Gaps = 1/119 (0%)
Query: 84 TQKLKHRNNGLFDKIVRKEVPCDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAA 143
Q + + +F KI+RKE+P + EDD C+AF DI+PQAP HFLV+PKK I +S A
Sbjct: 8 AQVARPGGDTIFGKIIRKEIPAKIIFEDDQCLAFHDISPQAPTHFLVIPKKHISQISAAE 67
Query: 144 DEDAKILGHLMIXXXXXXXX-XLIRNYRVVVNNGWEAVQFSGHLHLHVLGGRPLHWPPG 201
D D +LGHLMI L + YR+VVN G + Q H+HLHVLGGR ++WPPG
Sbjct: 68 DADESLLGHLMIVGKKAAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMNWPPG 126
>pdb|1RZY|A Chain A, Crystal Structure Of Rabbit Hint Complexed With N-
Ethylsulfamoyladenosine
pdb|3QGZ|A Chain A, Re-Investigated High Resolution Crystal Structure Of
Histidine Triad Nucleotide-Binding Protein 1 (Hint1)
From Rabbit Complexed With Adenosine
Length = 126
Score = 120 bits (301), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 59/119 (49%), Positives = 76/119 (63%), Gaps = 1/119 (0%)
Query: 84 TQKLKHRNNGLFDKIVRKEVPCDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAA 143
Q + + +F KI+RKE+P + EDD C+AF DI+PQAP HFLV+PKK I +S A
Sbjct: 8 AQVARPGGDTIFGKIIRKEIPAKIIFEDDQCLAFHDISPQAPTHFLVIPKKHISQISAAE 67
Query: 144 DEDAKILGHLMIXXXX-XXXXXLIRNYRVVVNNGWEAVQFSGHLHLHVLGGRPLHWPPG 201
D D +LGHLMI L + YR+VVN G + Q H+HLHVLGGR ++WPPG
Sbjct: 68 DADESLLGHLMIVGKKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMNWPPG 126
>pdb|3RHN|A Chain A, Histidine Triad Nucleotide-Binding Protein (Hint) From
Rabbit Complexed With Gmp
pdb|4RHN|A Chain A, Histidine Triad Nucleotide-binding Protein (hint) From
Rabbit Complexed With Adenosine
pdb|5RHN|A Chain A, Histidine Triad Nucleotide-Binding Protein (Hint) From
Rabbit Complexed With 8-Br-Amp
pdb|6RHN|A Chain A, Histidine Triad Nucleotide-Binding Protein (Hint) From
Rabbit Without Nucleotide
Length = 115
Score = 119 bits (299), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 58/112 (51%), Positives = 74/112 (66%), Gaps = 1/112 (0%)
Query: 91 NNGLFDKIVRKEVPCDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAADEDAKIL 150
+ +F KI+RKE+P + EDD C+AF DI+PQAP HFLV+PKK I +S A D D +L
Sbjct: 4 GDTIFGKIIRKEIPAKIIFEDDQCLAFHDISPQAPTHFLVIPKKHISQISAAEDADESLL 63
Query: 151 GHLMIXXXX-XXXXXLIRNYRVVVNNGWEAVQFSGHLHLHVLGGRPLHWPPG 201
GHLMI L + YR+VVN G + Q H+HLHVLGGR ++WPPG
Sbjct: 64 GHLMIVGKKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMNWPPG 115
>pdb|3O1Z|A Chain A, High Resolution Crystal Structure Of Histidine Triad
Nucleotide- Binding Protein 1 (Hint1) Double Cysteine
Mutant From Rabbit
Length = 126
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 57/112 (50%), Positives = 73/112 (65%), Gaps = 1/112 (0%)
Query: 91 NNGLFDKIVRKEVPCDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAADEDAKIL 150
+ +F KI+RKE+P + EDD +AF DI+PQAP HFLV+PKK I +S A D D +L
Sbjct: 15 GDTIFGKIIRKEIPAKIIFEDDQALAFHDISPQAPTHFLVIPKKHISQISAAEDADESLL 74
Query: 151 GHLMIXXXXXXXX-XLIRNYRVVVNNGWEAVQFSGHLHLHVLGGRPLHWPPG 201
GHLMI L + YR+VVN G + Q H+HLHVLGGR ++WPPG
Sbjct: 75 GHLMIVGKKAAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMNWPPG 126
>pdb|3O1C|A Chain A, High Resolution Crystal Structure Of Histidine Triad
Nucleotide- Binding Protein 1 (Hint1) C38a Mutant From
Rabbit Complexed With Adenosine
Length = 126
Score = 117 bits (293), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 75/119 (63%), Gaps = 1/119 (0%)
Query: 84 TQKLKHRNNGLFDKIVRKEVPCDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAA 143
Q + + +F KI+RKE+P + EDD +AF DI+PQAP HFLV+PKK I +S A
Sbjct: 8 AQVARPGGDTIFGKIIRKEIPAKIIFEDDQALAFHDISPQAPTHFLVIPKKHISQISAAE 67
Query: 144 DEDAKILGHLMIXXXX-XXXXXLIRNYRVVVNNGWEAVQFSGHLHLHVLGGRPLHWPPG 201
D D +LGHLMI L + YR+VVN G + Q H+HLHVLGGR ++WPPG
Sbjct: 68 DADESLLGHLMIVGKKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMNWPPG 126
>pdb|3OJ7|A Chain A, Crystal Structure Of A Histidine Triad Family Protein From
Entamoeba Histolytica, Bound To Sulfate
pdb|3OMF|A Chain A, Crystal Structure Of A Histidine Triad Family Protein From
Entamoeba Histolytica, Bound To Amp
pdb|3OXK|A Chain A, Crystal Structure Of A Histidine Triad Family Protein From
Entamoeba Histolytica, Bound To Gmp
Length = 117
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 62/108 (57%)
Query: 91 NNGLFDKIVRKEVPCDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAADEDAKIL 150
++ +F KI +K++P ++EDD AF DINP AP H LV+PK+ I SL+ +E+ +
Sbjct: 7 DSCIFCKIAQKQIPSTIVYEDDEIFAFKDINPIAPIHILVIPKQHIASLNEITEENEAFI 66
Query: 151 GHLMIXXXXXXXXXLIRNYRVVVNNGWEAVQFSGHLHLHVLGGRPLHW 198
G ++ YRVV N G +A Q H+H H+LGG+ L W
Sbjct: 67 GKVLYKVSLIGKKECPEGYRVVNNIGEDAGQTVKHIHFHILGGKKLAW 114
>pdb|3N1S|A Chain A, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|B Chain B, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|E Chain E, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|F Chain F, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|I Chain I, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|J Chain J, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|M Chain M, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|N Chain N, Crystal Structure Of Wild Type Echint Gmp Complex
Length = 119
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 62/105 (59%), Gaps = 2/105 (1%)
Query: 94 LFDKIVRKEVPCDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAADEDAKILGHL 153
+F KI+R+E+P D +++DDL AF DI+PQAP H L++P I +++ + E + LG +
Sbjct: 6 IFSKIIRREIPSDIVYQDDLVTAFRDISPQAPTHILIIPNILIPTVNDVSAEHEQALGRM 65
Query: 154 MIXXXXXXXXXLIR--NYRVVVNNGWEAVQFSGHLHLHVLGGRPL 196
+ I YR+++N Q H+H+H+LGGRPL
Sbjct: 66 ITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIHMHLLGGRPL 110
>pdb|3N1T|A Chain A, Crystal Structure Of The H101a Mutant Echint Gmp Complex
pdb|3N1T|B Chain B, Crystal Structure Of The H101a Mutant Echint Gmp Complex
pdb|3N1T|E Chain E, Crystal Structure Of The H101a Mutant Echint Gmp Complex
pdb|3N1T|F Chain F, Crystal Structure Of The H101a Mutant Echint Gmp Complex
Length = 119
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 61/105 (58%), Gaps = 2/105 (1%)
Query: 94 LFDKIVRKEVPCDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAADEDAKILGHL 153
+F KI+R+E+P D +++DDL AF DI+PQAP H L++P I +++ + E + LG +
Sbjct: 6 IFSKIIRREIPSDIVYQDDLVTAFRDISPQAPTHILIIPNILIPTVNDVSAEHEQALGRM 65
Query: 154 MIXXXXXXXXXLIR--NYRVVVNNGWEAVQFSGHLHLHVLGGRPL 196
+ I YR+++N Q H+ +H+LGGRPL
Sbjct: 66 ITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIAMHLLGGRPL 110
>pdb|1XQU|A Chain A, Hit Family Hydrolase From Clostridium Thermocellum Cth-393
pdb|1XQU|B Chain B, Hit Family Hydrolase From Clostridium Thermocellum Cth-393
Length = 147
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 66/124 (53%), Gaps = 5/124 (4%)
Query: 72 AQSSGGEQKQSVTQKLKHRNNGLFDKIVRKEVPCDFLHEDDLCVAFDDINPQAPEHFLVL 131
+QS+ +K + L+ N +F KI+++E+P +ED+ +A DINP AP H L++
Sbjct: 19 SQSTSLYKKAGLXYTLE---NCVFCKIIKRELPSTIYYEDERVIAIKDINPAAPVHVLII 75
Query: 132 PKKKIVSLSLAADEDAKIL--GHLMIXXXXXXXXXLIRNYRVVVNNGWEAVQFSGHLHLH 189
PK+ I ++ + +A+IL H + YR++ N G A Q HLH H
Sbjct: 76 PKEHIANVKEINESNAQILIDIHKAANKVAEDLGIAEKGYRLITNCGVAAGQTVFHLHYH 135
Query: 190 VLGG 193
+LGG
Sbjct: 136 LLGG 139
>pdb|4EGU|A Chain A, 0.95a Resolution Structure Of A Histidine Triad Protein
From Clostridium Difficile
pdb|4EGU|B Chain B, 0.95a Resolution Structure Of A Histidine Triad Protein
From Clostridium Difficile
Length = 119
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 59/109 (54%), Gaps = 2/109 (1%)
Query: 90 RNNGLFDKIVRKEVPCDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAADEDAKI 149
R + +F KI E+P ++EDD +AF+D+NP AP H LV+PKK SL D++ I
Sbjct: 3 RMDCIFCKIANGEIPSTKVYEDDRVLAFNDLNPVAPYHILVVPKKHYDSLIDIPDKEMDI 62
Query: 150 LGHL--MIXXXXXXXXXLIRNYRVVVNNGWEAVQFSGHLHLHVLGGRPL 196
+ H+ +I +RV+ N G + Q HLH H+L G+ L
Sbjct: 63 VSHIHVVINKIAKEKGFDQTGFRVINNCGSDGGQEVKHLHYHILAGKKL 111
>pdb|3LB5|A Chain A, Crystal Structure Of Hit-Like Protein Involved In
Cell-Cycle Regulation From Bartonella Henselae With
Unknown Ligand
pdb|3LB5|B Chain B, Crystal Structure Of Hit-Like Protein Involved In
Cell-Cycle Regulation From Bartonella Henselae With
Unknown Ligand
pdb|3LB5|C Chain C, Crystal Structure Of Hit-Like Protein Involved In
Cell-Cycle Regulation From Bartonella Henselae With
Unknown Ligand
pdb|3LB5|D Chain D, Crystal Structure Of Hit-Like Protein Involved In
Cell-Cycle Regulation From Bartonella Henselae With
Unknown Ligand
Length = 161
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 41/64 (64%), Gaps = 7/64 (10%)
Query: 72 AQSSG-GEQKQSVTQKLKHRNNGLFDKIVRKEVPCDFLHEDDLCVAFDDINPQAPEHFLV 130
AQ+ G G KQ+ + NN +F K++R E+P ++EDD +AF DI PQAP H LV
Sbjct: 14 AQTQGPGSMKQA------YDNNNIFAKLIRNEIPSVRVYEDDDVIAFMDIMPQAPGHTLV 67
Query: 131 LPKK 134
+PKK
Sbjct: 68 IPKK 71
>pdb|3KSV|A Chain A, Hypothetical Protein From Leishmania Major
Length = 149
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
Query: 92 NGLFDKIVRKEVPCDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAADEDAKILG 151
N +F KI++ ++PC + E +AF DINP + H LV+PK+ L EDA +G
Sbjct: 12 NCIFCKIIKGDIPCAKVAETSKALAFMDINPLSRGHMLVIPKEHASCLHELGMEDAADVG 71
Query: 152 HLMIXXXXXXXX-XLIRNYRVVVNNGWEAVQFSGHLHLHVL 191
L+ Y V+ NNG A Q H+H H++
Sbjct: 72 VLLAKASRAVAGPDGSMQYNVLQNNGSLAHQEVPHVHFHII 112
>pdb|3P0T|A Chain A, Crystal Structure Of An Hit-Like Protein From
Mycobacterium Paratuberculosis
pdb|3P0T|B Chain B, Crystal Structure Of An Hit-Like Protein From
Mycobacterium Paratuberculosis
Length = 138
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Query: 94 LFDKIVRKEVPCDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAADEDAKILGHL 153
+F KI+ +E+P F++EDD VAF I P H LV+P+++I + D D+ +
Sbjct: 8 IFTKIINRELPGRFVYEDDDVVAFLTIEPMTQGHTLVVPREEIDNWQ---DVDSAAFNRV 64
Query: 154 MIXXXXXXXXXLIRNYRVVVNNGWEAVQFSGHLHLHVLGGRPL 196
M + + +R + A HLH+HV R L
Sbjct: 65 M-GVSQLIGKAVCKAFRTERSGLIIAGLEVPHLHVHVFPTRSL 106
>pdb|3L7X|A Chain A, The Crystal Structure Of Smu.412c From Streptococcus
Mutans Ua159
Length = 173
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 6/123 (4%)
Query: 70 YVAQSSGGEQKQSVTQKLKHRNNGLFDKIVRKEVPCDFLHEDDLCVAFDDINPQAPEHFL 129
++A +GG+Q + N+ LF KIV ++P ++ED+ +AF DI+ H L
Sbjct: 20 HMASMTGGQQMGRGSM-----NDCLFCKIVAGDIPSSKVYEDEDVLAFLDISQATKGHTL 74
Query: 130 VLPKKKIV-SLSLAADEDAKILGHLMIXXXXXXXXXLIRNYRVVVNNGWEAVQFSGHLHL 188
V+PK+ + +L + + A + + ++ NN A Q H H+
Sbjct: 75 VIPKEHVRNALEMTQTQAANLFARIPKIARALQKATKADGLNIINNNEETAGQTVFHAHV 134
Query: 189 HVL 191
H++
Sbjct: 135 HLV 137
>pdb|1Y23|A Chain A, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
pdb|1Y23|B Chain B, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
pdb|1Y23|C Chain C, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
pdb|1Y23|D Chain D, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
pdb|1Y23|E Chain E, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
Length = 145
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 11/106 (10%)
Query: 92 NGLFDKIVRKEVPCDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAADEDAKILG 151
N +F KI+ ++P ++ED+ +AF DI+ H LV+PK I ++ DE AK
Sbjct: 6 NCIFCKIIAGDIPSAKVYEDEHVLAFLDISQVTKGHTLVIPKTHIENVYEFTDELAKQYF 65
Query: 152 HLMIXXXXXXXXXLIRN------YRVVVNNGWEAVQFSGHLHLHVL 191
H + IR+ + NNG +A Q H H+H++
Sbjct: 66 HAV-----PKIARAIRDEFEPIGLNTLNNNGEKAGQSVFHYHMHII 106
>pdb|2EO4|A Chain A, Crystal Structure Of Hypothetical Histidine Triad
Nucleotide-Binding Protein St2152 From Sulfolobus
Tokodaii Strain7
Length = 149
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 95 FDKIVRKEVPCDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAADED--AKILGH 152
F I+ +E+ F++ED+ A D P + H LV+PKK + L ADED A++
Sbjct: 3 FCSIINRELEGYFVYEDEKFAAILDKYPVSLGHTLVIPKKHFENY-LEADEDTLAELAKV 61
Query: 153 LMIXXXXXXXXXLIRNYRVVVNNGWEAVQFSGHLHLHVL 191
+ + R++ N G A Q HLH+H++
Sbjct: 62 VKLVSLGIKDAVKADGLRLLTNIGRSAGQVIFHLHVHII 100
>pdb|3O0M|A Chain A, Crystal Structure Of A Zn-Bound Histidine Triad Family
Protein From Mycobacterium Smegmatis
pdb|3O0M|B Chain B, Crystal Structure Of A Zn-Bound Histidine Triad Family
Protein From Mycobacterium Smegmatis
Length = 149
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
Query: 94 LFDKIVRKEVPCDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAADEDAKILGHL 153
+F IV + P ++ED+ + DI P H LV+PK V L+ E + +
Sbjct: 8 VFCAIVSGDAPAIRIYEDENFLGILDIRPFTRGHTLVIPKTHTVDLTDTPPETVAGMAAV 67
Query: 154 --MIXXXXXXXXXLIRNYRVVVNNGWEAVQFSGHLHLHVL 191
I + +N+G A Q H+HLHV+
Sbjct: 68 GQRIARAARESGLHADGNNIAINDGKAAFQTVFHIHLHVV 107
>pdb|3IMI|A Chain A, 2.01 Angstrom Resolution Crystal Structure Of A Hit Family
Protein From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3IMI|B Chain B, 2.01 Angstrom Resolution Crystal Structure Of A Hit Family
Protein From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3IMI|C Chain C, 2.01 Angstrom Resolution Crystal Structure Of A Hit Family
Protein From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3IMI|D Chain D, 2.01 Angstrom Resolution Crystal Structure Of A Hit Family
Protein From Bacillus Anthracis Str. 'ames Ancestor'
Length = 147
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 1/102 (0%)
Query: 91 NNGLFDKIVRKEVPCDFLHEDDLCVAFDDINPQAPEHFLVLPK-KKIVSLSLAADEDAKI 149
+N +F KI+ ++ C ++ED+ +AF DI+ H LV+PK K +L + + I
Sbjct: 9 DNCIFCKIIDGQILCSKVYEDEHVLAFLDISQVTKGHTLVIPKVHKQDIFALTPEIASHI 68
Query: 150 LGHLMIXXXXXXXXXLIRNYRVVVNNGWEAVQFSGHLHLHVL 191
+ + ++ NNG +A Q H HLH++
Sbjct: 69 FSVVPKIANAIKAEFNPVGFNLLNNNGEKAGQTVFHFHLHLI 110
>pdb|1EMS|A Chain A, Crystal Structure Of The C. Elegans Nitfhit Protein
pdb|1EMS|B Chain B, Crystal Structure Of The C. Elegans Nitfhit Protein
Length = 440
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 2/100 (2%)
Query: 97 KIVRKEVPCD-FLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAAD-EDAKILGHLM 154
K R +P D + F ++ P H LV PK+ + L+ D E A +
Sbjct: 300 KFARFNIPADHIFYSTPHSFVFVNLKPVTDGHVLVSPKRVVPRLTDLTDAETADLFIVAK 359
Query: 155 IXXXXXXXXXLIRNYRVVVNNGWEAVQFSGHLHLHVLGGR 194
+ + + V +G +A Q H+H+H+L R
Sbjct: 360 KVQAMLEKHHNVTSTTICVQDGKDAGQTVPHVHIHILPRR 399
>pdb|3ANO|A Chain A, Crystal Structure Of A Novel Diadenosine
5',5'''-P1,P4-Tetraphosphate Phosphorylase From
Mycobacterium Tuberculosis H37rv
pdb|3ANO|B Chain B, Crystal Structure Of A Novel Diadenosine
5',5'''-P1,P4-Tetraphosphate Phosphorylase From
Mycobacterium Tuberculosis H37rv
Length = 218
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 113 LCVAFDDINPQAPEHFLVLPKKKIVSLSLAAD-EDAKILGHLMIXXXXXXXXXLIRNYRV 171
L A ++ P P H +V+P +++ L D E A+++ + V
Sbjct: 92 LVYAVLNLYPYNPGHLMVVPYRRVSELEDLTDLESAELMAFTQKAIRVIKNVSRPHGFNV 151
Query: 172 VVNNGWEA-VQFSGHLHLHVL 191
+N G A + HLH+HV+
Sbjct: 152 GLNLGTSAGGSLAEHLHVHVV 172
>pdb|3R6F|A Chain A, Crystal Structure Of A Zinc-Containing Hit Family Protein
From Encephalitozoon Cuniculi
Length = 135
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 7/98 (7%)
Query: 94 LFDKIVRKEVPCDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAADEDAKILGHL 153
+F + RK + ++E D A D P + HFLV+PK L E+ L +
Sbjct: 9 IFCTLYRK--GANIIYETDRLFALIDRYPLSKGHFLVIPKAHHPYLHNYKPEE---LSGV 63
Query: 154 MIXXXXXXXXXLIRNYRVVVNNGWEAVQFSGHLHLHVL 191
+ Y ++ NNG F H+H HV+
Sbjct: 64 LDTIRHLVQKFGFERYNILQNNGNHQEVF--HVHFHVI 99
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,992,969
Number of Sequences: 62578
Number of extensions: 224140
Number of successful extensions: 446
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 387
Number of HSP's gapped (non-prelim): 44
length of query: 201
length of database: 14,973,337
effective HSP length: 94
effective length of query: 107
effective length of database: 9,091,005
effective search space: 972737535
effective search space used: 972737535
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)