Query psy5899
Match_columns 201
No_of_seqs 267 out of 1124
Neff 6.3
Searched_HMMs 46136
Date Fri Aug 16 21:06:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5899.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5899hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3275|consensus 100.0 3.3E-32 7.1E-37 207.0 11.3 112 90-201 15-127 (127)
2 PRK11720 galactose-1-phosphate 100.0 1.5E-32 3.3E-37 246.0 10.9 148 54-201 156-315 (346)
3 TIGR00209 galT_1 galactose-1-p 100.0 2.1E-32 4.6E-37 245.2 10.9 148 54-201 156-315 (347)
4 cd00608 GalT Galactose-1-phosp 100.0 4.9E-31 1.1E-35 234.7 10.4 153 48-201 141-305 (329)
5 PRK10687 purine nucleoside pho 100.0 2.1E-30 4.5E-35 200.4 11.9 107 91-197 3-111 (119)
6 PLN02643 ADP-glucose phosphory 100.0 1.6E-29 3.4E-34 225.8 11.8 135 54-194 160-303 (336)
7 cd01276 PKCI_related Protein K 100.0 1.5E-28 3.2E-33 183.6 11.9 102 92-193 1-104 (104)
8 cd01277 HINT_subgroup HINT (hi 99.9 3.7E-27 8.1E-32 175.1 12.5 102 92-193 1-103 (103)
9 COG0537 Hit Diadenosine tetrap 99.9 3.2E-27 6.9E-32 186.8 12.7 102 92-196 2-107 (138)
10 cd01275 FHIT FHIT (fragile his 99.9 2.7E-26 5.9E-31 177.6 12.5 102 93-194 1-104 (126)
11 cd01278 aprataxin_related apra 99.9 6.2E-25 1.3E-29 164.3 11.6 99 92-192 1-104 (104)
12 PF01230 HIT: HIT domain; Int 99.9 1.8E-24 3.9E-29 160.3 10.0 93 100-195 1-97 (98)
13 COG1085 GalT Galactose-1-phosp 99.9 8.1E-23 1.8E-27 181.5 8.6 145 54-201 147-305 (338)
14 cd00468 HIT_like HIT family: H 99.9 1.6E-21 3.4E-26 140.0 9.8 82 108-192 1-86 (86)
15 KOG3379|consensus 99.8 3.8E-19 8.3E-24 139.0 10.7 102 92-196 6-109 (150)
16 PF11969 DcpS_C: Scavenger mRN 99.8 1.1E-19 2.5E-24 139.6 7.0 99 92-194 1-105 (116)
17 KOG2958|consensus 99.7 5.7E-17 1.2E-21 140.8 6.2 135 55-192 162-308 (354)
18 PF02744 GalP_UDP_tr_C: Galact 99.7 2.3E-16 5E-21 128.4 8.0 108 91-201 13-133 (166)
19 KOG4359|consensus 99.6 2.4E-14 5.2E-19 112.6 9.6 100 91-192 31-135 (166)
20 KOG3275|consensus 99.3 6.8E-14 1.5E-18 107.0 -2.0 76 43-140 15-90 (127)
21 PF04677 CwfJ_C_1: Protein sim 99.0 1.3E-08 2.9E-13 78.9 11.7 98 91-193 11-108 (121)
22 KOG2476|consensus 98.4 1.3E-06 2.8E-11 80.8 8.9 97 91-193 319-416 (528)
23 KOG0562|consensus 98.1 2.1E-06 4.5E-11 69.8 3.6 88 106-194 16-106 (184)
24 KOG3969|consensus 97.2 0.0022 4.8E-08 56.2 9.3 86 104-193 159-256 (310)
25 PLN03103 GDP-L-galactose-hexos 97.0 0.0023 4.9E-08 58.9 7.4 73 110-192 167-241 (403)
26 KOG2477|consensus 96.8 0.01 2.2E-07 56.1 9.6 99 91-193 407-507 (628)
27 cd00608 GalT Galactose-1-phosp 96.5 0.015 3.2E-07 52.1 8.5 63 127-192 95-161 (329)
28 COG4360 APA2 ATP adenylyltrans 96.4 0.0046 9.9E-08 53.5 4.7 72 112-193 92-163 (298)
29 PLN02643 ADP-glucose phosphory 95.4 0.13 2.8E-06 46.4 9.5 64 126-192 108-175 (336)
30 PRK10687 purine nucleoside pho 95.1 0.014 3.1E-07 44.9 2.2 32 45-76 4-35 (119)
31 COG1085 GalT Galactose-1-phosp 94.7 0.12 2.6E-06 46.8 7.2 62 128-192 97-162 (338)
32 KOG2720|consensus 94.5 0.037 8.1E-07 50.2 3.4 72 110-191 165-237 (431)
33 PRK05471 CDP-diacylglycerol py 94.1 0.26 5.6E-06 42.9 7.7 65 124-191 72-144 (252)
34 TIGR00672 cdh CDP-diacylglycer 94.0 0.27 5.9E-06 42.7 7.7 76 111-191 60-143 (250)
35 PRK11720 galactose-1-phosphate 93.9 0.32 7E-06 44.1 8.5 64 126-192 106-171 (346)
36 COG0537 Hit Diadenosine tetrap 93.9 0.067 1.5E-06 42.2 3.5 32 45-76 2-33 (138)
37 TIGR00209 galT_1 galactose-1-p 93.1 0.72 1.6E-05 41.8 9.2 64 126-192 106-171 (347)
38 PF02611 CDH: CDP-diacylglycer 92.5 0.45 9.7E-06 40.7 6.6 76 111-191 32-115 (222)
39 COG5075 Uncharacterized conser 92.0 0.28 6.1E-06 42.7 4.8 85 104-192 154-250 (305)
40 PF01087 GalP_UDP_transf: Gala 91.1 0.08 1.7E-06 43.5 0.6 21 54-74 163-183 (183)
41 PF11969 DcpS_C: Scavenger mRN 89.8 0.1 2.2E-06 39.8 0.2 43 45-101 1-43 (116)
42 COG2134 Cdh CDP-diacylglycerol 88.4 3.5 7.5E-05 35.3 8.3 84 91-191 53-144 (252)
43 PF01087 GalP_UDP_transf: Gala 83.8 4 8.6E-05 33.4 6.4 65 127-192 112-178 (183)
44 cd01276 PKCI_related Protein K 79.3 1.6 3.5E-05 31.8 2.3 31 45-75 1-31 (104)
45 PF01230 HIT: HIT domain; Int 70.3 4 8.8E-05 29.4 2.5 23 53-75 1-23 (98)
46 PF14317 YcxB: YcxB-like prote 63.4 18 0.00039 23.0 4.4 38 106-153 23-60 (62)
47 cd01277 HINT_subgroup HINT (hi 54.6 11 0.00024 27.0 2.3 32 45-76 1-32 (103)
48 PF03432 Relaxase: Relaxase/Mo 47.2 38 0.00082 28.0 4.7 33 154-192 75-109 (242)
49 cd01278 aprataxin_related apra 46.8 16 0.00035 26.4 2.2 30 47-76 3-34 (104)
50 KOG3210|consensus 42.8 7.9 0.00017 32.2 -0.1 40 8-48 109-148 (226)
51 PF09928 DUF2160: Predicted sm 42.4 19 0.00042 26.5 1.9 39 13-52 15-53 (88)
52 PRK13878 conjugal transfer rel 36.1 41 0.00089 33.8 3.7 32 156-193 89-122 (746)
53 PF01076 Mob_Pre: Plasmid reco 31.9 1.3E+02 0.0028 24.7 5.6 41 150-194 100-142 (196)
54 cd01275 FHIT FHIT (fragile his 26.7 52 0.0011 24.7 2.2 30 47-76 2-32 (126)
55 COG2928 Uncharacterized conser 26.6 1.7E+02 0.0037 25.1 5.4 30 111-140 152-182 (222)
56 COG1943 Transposase and inacti 26.0 1.3E+02 0.0029 23.3 4.4 19 122-140 10-28 (136)
57 PF01446 Rep_1: Replication pr 24.6 3.6E+02 0.0079 23.0 7.2 42 148-191 40-87 (233)
58 TIGR03793 TOMM_pelo TOMM prope 23.8 91 0.002 22.2 2.8 21 126-149 53-73 (77)
No 1
>KOG3275|consensus
Probab=99.98 E-value=3.3e-32 Score=206.99 Aligned_cols=112 Identities=57% Similarity=0.941 Sum_probs=107.4
Q ss_pred CCCceeccccCccccccEEEEcCcEEEEecCCCCCCeEEEEEecccccCccCCChhhHHHHHHHHHHHHHHHHh-hCCCC
Q psy5899 90 RNNGLFDKIVRKEVPCDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAADEDAKILGHLMIVAKKVAAK-KLIRN 168 (201)
Q Consensus 90 ~~~C~FC~Ii~~ei~~~iv~edd~~~af~d~~P~~pGHlLVvPkrHv~~l~dLt~ee~~~l~~l~~~~k~ll~~-~l~~~ 168 (201)
+++|.||+|+++|+|+.++||||.++||.|.+|..|+|+|||||+|++.++.+.+.+.+++++++.++|+++++ ++++|
T Consensus 15 ~~~tIF~kIi~keIPa~ii~Edd~~lAF~Di~Pqap~HfLvIPK~hi~~~s~aed~~~e~Lg~ll~~~k~vak~~Gl~~g 94 (127)
T KOG3275|consen 15 AAPTIFCKIIRKEIPAKIIFEDDRCLAFHDIAPQAPGHFLVIPKKHITQLSKAEDRDDELLGHLLPVAKKVAKALGLEDG 94 (127)
T ss_pred CCCcEeeeeecccCCcceEeeccceEEEEecCCCCCceEEEeecccccchhhcccCCHHHHHHHHHHHHHHHHHhCcccc
Confidence 47999999999999999999999999999999999999999999998888888777888999999999999999 99899
Q ss_pred eEEEEecccCCCCccceeEEEEEcCCCCCCCCC
Q psy5899 169 YRVVVNNGWEAVQFSGHLHLHVLGGRPLHWPPG 201 (201)
Q Consensus 169 y~v~~n~G~~agqsv~HlHlHIIPRrklkw~a~ 201 (201)
||+.+|+|..+.|+|+|+|+||+|++.++|++|
T Consensus 95 Yrvv~NnG~~g~QsV~HvH~HvlgGrqm~WPpg 127 (127)
T KOG3275|consen 95 YRVVQNNGKDGHQSVYHVHLHVLGGRQMQWPPG 127 (127)
T ss_pred eeEEEcCCcccceEEEEEEEEEeCCcccCCCCC
Confidence 999999999999999999999999999999997
No 2
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=99.98 E-value=1.5e-32 Score=246.04 Aligned_cols=148 Identities=14% Similarity=0.099 Sum_probs=124.5
Q ss_pred eecCceeecCCCeEEeeeccCCccccchhhhhc-ccCCCCceeccccCcccc--ccEEEEcCcEEEEecCCCCCCeEEEE
Q psy5899 54 KEVPCDFLHEDDLLTWYVAQSSGGEQKQSVTQK-LKHRNNGLFDKIVRKEVP--CDFLHEDDLCVAFDDINPQAPEHFLV 130 (201)
Q Consensus 54 ~ei~~~~~h~~~q~~a~~~i~p~~~~~~~~~~~-~~~~~~C~FC~Ii~~ei~--~~iv~edd~~~af~d~~P~~pGHlLV 130 (201)
+++||++.|||+||||++++|++.++++.++++ +...+.|+||+|+++|++ .++|+||++|+||+|++|++|||+||
T Consensus 156 ~~~GaSl~HPH~Qi~a~p~vP~~~~~e~~~~~~y~~~~g~Clfcdii~~E~~~~~RiV~End~fvAf~p~~p~~P~h~lI 235 (346)
T PRK11720 156 AAMGCSNPHPHGQIWANSFLPNEAEREDRLQRAYFAEHGSPLLVDYVQRELADGERIVVETEHWLAVVPYWAAWPFETLL 235 (346)
T ss_pred cccCcCCCCCceeeeeCCCCChHHHHHHHHHHHHHHHcCCeEHHHHHHhhhhcCCeEEEECCCEEEEeccccCCCCeEEE
Confidence 568999999999999999999999988877666 443578999999999986 48999999999999999999999999
Q ss_pred EecccccCccCCChhhHHHHHHHHHHHHHHHHhhCC--CCeEEEEecccCCC--CccceeEEEEEcC-----CCCCCCCC
Q psy5899 131 LPKKKIVSLSLAADEDAKILGHLMIVAKKVAAKKLI--RNYRVVVNNGWEAV--QFSGHLHLHVLGG-----RPLHWPPG 201 (201)
Q Consensus 131 vPkrHv~~l~dLt~ee~~~l~~l~~~~k~ll~~~l~--~~y~v~~n~G~~ag--qsv~HlHlHIIPR-----rklkw~a~ 201 (201)
+||+|+.++.+|++++..+|++++..+.+.+++.++ .+||+++|+++.++ ++++|+|+||+|| .++||++|
T Consensus 236 iPKrH~~~~~dl~dee~~~La~~lk~v~~~l~~~~~~~~pyn~~~h~~p~~~~~~~~~H~HihiiPrl~Rs~~~~k~~aG 315 (346)
T PRK11720 236 LPKAHVLRLTDLTDAQRDDLALALKKLTSRYDNLFQCSFPYSMGWHGAPFNGEENDHWQLHAHFYPPLLRSATVRKFMVG 315 (346)
T ss_pred ecccCCCChhhCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCceeEEecccCCCCCeeEEEEEEEeCCccCccccccceee
Confidence 999999999999988877777655433332333342 48999999999754 6799999999998 36888886
No 3
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=99.98 E-value=2.1e-32 Score=245.19 Aligned_cols=148 Identities=13% Similarity=0.098 Sum_probs=124.4
Q ss_pred eecCceeecCCCeEEeeeccCCccccchhhhhc-ccCCCCceeccccCccc--cccEEEEcCcEEEEecCCCCCCeEEEE
Q psy5899 54 KEVPCDFLHEDDLLTWYVAQSSGGEQKQSVTQK-LKHRNNGLFDKIVRKEV--PCDFLHEDDLCVAFDDINPQAPEHFLV 130 (201)
Q Consensus 54 ~ei~~~~~h~~~q~~a~~~i~p~~~~~~~~~~~-~~~~~~C~FC~Ii~~ei--~~~iv~edd~~~af~d~~P~~pGHlLV 130 (201)
+++||++.|||+||||++++||+.++++.++++ +...+.|+||+|+++|+ +.++|+||++|+||+|++|++|||+||
T Consensus 156 ~~~GaSl~HPH~Qi~a~p~vP~~~~~e~~~~~~y~~~~g~clfcdIi~~E~~~~~riV~End~fvAf~p~~p~~Pgh~lI 235 (347)
T TIGR00209 156 AAMGCSNPHPHGQIWANSFLPNEVEREDRLQKEYFAEHKSPMLVDYVKRELADKSRTVVETEHWIAVVPYWAIWPFETLL 235 (347)
T ss_pred cccCcCCCCCceeeeeCCCCChHHHHHHHHHHHHHHHcCCccHHHHHHhHhhcCCeEEEECCCEEEEeccCCCCCCeEEE
Confidence 578999999999999999999999988887776 54458899999999987 469999999999999999999999999
Q ss_pred EecccccCccCCChhhHHHHHHHHHHHHHHHHhhCC--CCeEEEEecccCCCC--ccceeEEEEEcCC-----CCCCCCC
Q psy5899 131 LPKKKIVSLSLAADEDAKILGHLMIVAKKVAAKKLI--RNYRVVVNNGWEAVQ--FSGHLHLHVLGGR-----PLHWPPG 201 (201)
Q Consensus 131 vPkrHv~~l~dLt~ee~~~l~~l~~~~k~ll~~~l~--~~y~v~~n~G~~agq--sv~HlHlHIIPRr-----klkw~a~ 201 (201)
+||+|+.++.+|++++..++++++..+.+.+++.++ .+||+++|+++.+++ ..+|+|+||+||. ++|+++|
T Consensus 236 iPKrH~~~~~dl~d~e~~~La~~lk~v~~~l~~~~~~~~pYn~~~h~~p~~~~~~~~~H~HihiiPrl~R~~~~~k~~aG 315 (347)
T TIGR00209 236 LPKAHVLRITDLTDAQRSDLALILKKLTSKYDNLFETSFPYSMGWHGAPFNGEENQHWQLHAHFYPPLLRSATVRKFMVG 315 (347)
T ss_pred eeccCCCChhhCCHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeEEecccCCCCCcEEEEEEEEeCCcccccccccceee
Confidence 999999999999988877777655433333333343 389999999998765 6678999999984 5788876
No 4
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
Probab=99.97 E-value=4.9e-31 Score=234.66 Aligned_cols=153 Identities=14% Similarity=0.133 Sum_probs=127.2
Q ss_pred eceeeeeecCceeecCCCeEEeeeccCCccccchhhhhc-ccCCCCceeccccCcccc--ccEEEEcCcEEEEecCCCCC
Q psy5899 48 FDKIVRKEVPCDFLHEDDLLTWYVAQSSGGEQKQSVTQK-LKHRNNGLFDKIVRKEVP--CDFLHEDDLCVAFDDINPQA 124 (201)
Q Consensus 48 ~~~~~r~ei~~~~~h~~~q~~a~~~i~p~~~~~~~~~~~-~~~~~~C~FC~Ii~~ei~--~~iv~edd~~~af~d~~P~~ 124 (201)
|.--. +++||++.|||+|++|++++|++.++++.++++ +...+.|+||+++++|.+ .++|+|||+|+||+|++|++
T Consensus 141 f~N~G-~~aGaSl~HpH~Qi~a~~~vp~~~~~e~~~~~~y~~~~g~clfcdii~~E~~~~~riV~end~~va~~p~~~~~ 219 (329)
T cd00608 141 FENKG-AEMGASLPHPHGQIWALPFLPPEVARELRNQKAYYEKHGRCLLCDYLKLELESKERIVVENEHFVAVVPFWARW 219 (329)
T ss_pred EeecC-cccccCCCCCCeeeeeCCcCChHHHHHHHHHHHHHHHcCCccHHHHHHhhhhcCCeEEEeCCCEEEEEecCCCC
Confidence 44443 457999999999999999999999888877666 433478999999999876 69999999999999999999
Q ss_pred CeEEEEEecccccCccCCChhhHHHHHHHHHHHHHHHHhhCC--CCeEEEEecccCCC----CccceeEEEEEcCC---C
Q psy5899 125 PEHFLVLPKKKIVSLSLAADEDAKILGHLMIVAKKVAAKKLI--RNYRVVVNNGWEAV----QFSGHLHLHVLGGR---P 195 (201)
Q Consensus 125 pGHlLVvPkrHv~~l~dLt~ee~~~l~~l~~~~k~ll~~~l~--~~y~v~~n~G~~ag----qsv~HlHlHIIPRr---k 195 (201)
|||+||+||+|+.++.+|++++..+|++++..+.+.+.+.++ .+||+++|+++..+ +.++|+|+|++||+ +
T Consensus 220 P~e~lIiPKrH~~~~~dl~~~e~~~La~~l~~v~~~l~~~~~~~~pyn~~~h~~P~~~~~~~~~~~H~Hihi~Pr~~~~~ 299 (329)
T cd00608 220 PFEVHILPKRHVSRFTDLTDEEREDLAEILKRLLARYDNLFNCSFPYSMGWHQAPTGGKELENWYYHWHFEIPPRRSATV 299 (329)
T ss_pred CcEEEEecCCCcCChhHCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeccCCCCCcCCcceEEEEEEeCCCcCCCc
Confidence 999999999999999999999887777766544333333333 58999999998764 68999999999986 4
Q ss_pred CCCCCC
Q psy5899 196 LHWPPG 201 (201)
Q Consensus 196 lkw~a~ 201 (201)
+|+++|
T Consensus 300 ~~~~aG 305 (329)
T cd00608 300 LKFMAG 305 (329)
T ss_pred eeeeEE
Confidence 777654
No 5
>PRK10687 purine nucleoside phosphoramidase; Provisional
Probab=99.97 E-value=2.1e-30 Score=200.37 Aligned_cols=107 Identities=38% Similarity=0.726 Sum_probs=100.2
Q ss_pred CCceeccccCccccccEEEEcCcEEEEecCCCCCCeEEEEEecccccCccCCChhhHHHHHHHHHHHHHHHHh-hCC-CC
Q psy5899 91 NNGLFDKIVRKEVPCDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAADEDAKILGHLMIVAKKVAAK-KLI-RN 168 (201)
Q Consensus 91 ~~C~FC~Ii~~ei~~~iv~edd~~~af~d~~P~~pGHlLVvPkrHv~~l~dLt~ee~~~l~~l~~~~k~ll~~-~l~-~~ 168 (201)
+.|+||+|+++++++.+|||||+++||+|.+|..+||+||+||+|++++.||++++..++.+++..++++++. +++ ++
T Consensus 3 ~~CiFC~I~~g~~p~~~v~edd~~~aflD~~P~~~GH~LViPK~H~~~l~dl~~~~~~~l~~l~~~~~~~~~~~~~~~~g 82 (119)
T PRK10687 3 EETIFSKIIRREIPSDIVYQDELVTAFRDISPQAPTHILIIPNILIPTVNDVSAEHEQALGRMITVAAKIAEQEGIAEDG 82 (119)
T ss_pred CCCchhhhhcCCCCCCEEEECCCEEEEEcCCCCCCccEEEEehhHhCChhHCChHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 4799999999999999999999999999999999999999999999999999999999999999999888776 554 79
Q ss_pred eEEEEecccCCCCccceeEEEEEcCCCCC
Q psy5899 169 YRVVVNNGWEAVQFSGHLHLHVLGGRPLH 197 (201)
Q Consensus 169 y~v~~n~G~~agqsv~HlHlHIIPRrklk 197 (201)
|++.+|+|+.+||+|+|+|+|||||+++.
T Consensus 83 ~~l~~n~G~~agQ~V~HlHiHvI~g~~~~ 111 (119)
T PRK10687 83 YRLIMNTNRHGGQEVYHIHMHLLGGRPLG 111 (119)
T ss_pred eEEEEeCCCcCCcccCEEEEEECCCcccC
Confidence 99999999999999999999999998753
No 6
>PLN02643 ADP-glucose phosphorylase
Probab=99.96 E-value=1.6e-29 Score=225.85 Aligned_cols=135 Identities=13% Similarity=0.186 Sum_probs=114.6
Q ss_pred eecCceeecCCCeEEeeeccCCccccchhhhhc-ccCCCCceeccccCccccccEEEEcCcEEEEecCCCCCCeEEEEEe
Q psy5899 54 KEVPCDFLHEDDLLTWYVAQSSGGEQKQSVTQK-LKHRNNGLFDKIVRKEVPCDFLHEDDLCVAFDDINPQAPEHFLVLP 132 (201)
Q Consensus 54 ~ei~~~~~h~~~q~~a~~~i~p~~~~~~~~~~~-~~~~~~C~FC~Ii~~ei~~~iv~edd~~~af~d~~P~~pGHlLVvP 132 (201)
+++||++.|||+||||++++|++.++++.+.++ +...+.|+||+|+++|+ +|+||++|+||+|++|++|||+||+|
T Consensus 160 ~~aGaSl~HPH~Qi~a~~~vP~~~~~el~~~~~y~~~~g~Clfcdii~~E~---iV~en~~f~Af~p~ap~~P~evlIiP 236 (336)
T PLN02643 160 ASAGASMSHSHSQIIALPVVPPSVSARLDGSKEYFEKTGKCSLCEVVKKDL---LIDESSHFVSIAPFAATFPFEIWIIP 236 (336)
T ss_pred ccCCcCCCCCceeeEecCcCChHHHHHHHHHHHHHHHhCCCcHHHHHhCcc---EEEeCCCEEEEeccccCCCCEEEEEe
Confidence 458999999999999999999999888877666 43348899999999886 99999999999999999999999999
Q ss_pred cccccCccCCChhhHHHHHHHHHHHHHHHHh---hCC-CCeEEEEecccCC--CC--ccceeEEEEEcCC
Q psy5899 133 KKKIVSLSLAADEDAKILGHLMIVAKKVAAK---KLI-RNYRVVVNNGWEA--VQ--FSGHLHLHVLGGR 194 (201)
Q Consensus 133 krHv~~l~dLt~ee~~~l~~l~~~~k~ll~~---~l~-~~y~v~~n~G~~a--gq--sv~HlHlHIIPRr 194 (201)
|+|+.++.+|++++..+|+++++ +++++ .++ .+||+++|+|+.. ++ ..+|+|+||+||.
T Consensus 237 KrH~~~~~dl~~~e~~~La~ilk---~v~~~l~~~~~~~pyN~~~~~~P~~~~~~~~~~~H~hihi~PRl 303 (336)
T PLN02643 237 RDHSSNFHEIDDDKAVDLGGLLK---LMLQKISKQLNDPPYNYMIQTSPLGVEESNLPYTHWFLQIVPQL 303 (336)
T ss_pred ccccCChhhCCHHHHHHHHHHHH---HHHHHHHHhcCCCCceeeeecCCCccccCcccceEEEEEEecCc
Confidence 99999999999998877777554 44444 333 5999999999973 44 4567777999986
No 7
>cd01276 PKCI_related Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.
Probab=99.96 E-value=1.5e-28 Score=183.57 Aligned_cols=102 Identities=52% Similarity=0.780 Sum_probs=96.3
Q ss_pred CceeccccCccccccEEEEcCcEEEEecCCCCCCeEEEEEecccccCccCCChhhHHHHHHHHHHHHHHHHh-hC-CCCe
Q psy5899 92 NGLFDKIVRKEVPCDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAADEDAKILGHLMIVAKKVAAK-KL-IRNY 169 (201)
Q Consensus 92 ~C~FC~Ii~~ei~~~iv~edd~~~af~d~~P~~pGHlLVvPkrHv~~l~dLt~ee~~~l~~l~~~~k~ll~~-~l-~~~y 169 (201)
+|+||+++++|.+.++||||++++||+|.+|.+|||+||+||+|++++.||+++|.+++.+++..++++.+. +. .++|
T Consensus 1 ~C~fc~i~~~e~~~~iv~e~~~~~a~~~~~p~~~gh~lIiPk~H~~~~~dl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 80 (104)
T cd01276 1 DCIFCKIIRGEIPAKKVYEDDEVLAFHDINPQAPVHILVIPKKHIASLSDATEEDEELLGHLLSAAAKVAKDLGIAEDGY 80 (104)
T ss_pred CCcceecccCCCccCEEEECCCEEEEECCCCCCCCEEEEEecceeCChHHcccccHHHHHHHHHHHHHHHHHhCCCCCCE
Confidence 499999999999999999999999999999999999999999999999999999999999999999888887 54 3799
Q ss_pred EEEEecccCCCCccceeEEEEEcC
Q psy5899 170 RVVVNNGWEAVQFSGHLHLHVLGG 193 (201)
Q Consensus 170 ~v~~n~G~~agqsv~HlHlHIIPR 193 (201)
|+.+|+|+.+||+++|+|+|||+|
T Consensus 81 n~~~~~g~~~g~~v~H~HiHii~~ 104 (104)
T cd01276 81 RLVINCGKDGGQEVFHLHLHLLGG 104 (104)
T ss_pred EEEEeCCCCCCCceeEEEEEEeCC
Confidence 999999999999999999999986
No 8
>cd01277 HINT_subgroup HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides. This subgroup includes members from all three forms of cellular life. Although the biochemical function has not been characterised for many of the members of this subgroup, the proteins from Yeast have been shown to be involved in secretion, peroxisome formation and gene expression.
Probab=99.95 E-value=3.7e-27 Score=175.10 Aligned_cols=102 Identities=33% Similarity=0.395 Sum_probs=90.2
Q ss_pred CceeccccCccccccEEEEcCcEEEEecCCCCCCeEEEEEecccccCccCCChhhHHHHHHHHHHHHHHHHhhCC-CCeE
Q psy5899 92 NGLFDKIVRKEVPCDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAADEDAKILGHLMIVAKKVAAKKLI-RNYR 170 (201)
Q Consensus 92 ~C~FC~Ii~~ei~~~iv~edd~~~af~d~~P~~pGHlLVvPkrHv~~l~dLt~ee~~~l~~l~~~~k~ll~~~l~-~~y~ 170 (201)
+|+||++++++.+..+|+|+++++||+|.+|.+|||++|+||+|+.++.||+++|..++..++..+.+.+++.++ ++||
T Consensus 1 ~C~~c~ii~~e~~~~iv~e~~~~~a~~~~~~~~pg~~lI~Pk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~n 80 (103)
T cd01277 1 DCIFCKIIAGEIPSYKVYEDDHVLAFLDINPASKGHTLVIPKKHYENLLDLDPEELAELILAAKKVARALKKALKADGLN 80 (103)
T ss_pred CCccccccCCCCCCCEEEeCCCEEEEECCCCCCCeeEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCceE
Confidence 499999999998888999999999999999999999999999999999999988877777765544444444444 6999
Q ss_pred EEEecccCCCCccceeEEEEEcC
Q psy5899 171 VVVNNGWEAVQFSGHLHLHVLGG 193 (201)
Q Consensus 171 v~~n~G~~agqsv~HlHlHIIPR 193 (201)
+.+|+|+.+|++++|+|+||+||
T Consensus 81 ~~~~~~~~~g~~~~H~HiHiiPR 103 (103)
T cd01277 81 ILQNNGRAAGQVVFHVHVHVIPR 103 (103)
T ss_pred EEEeCCcccCcccCEEEEEEccC
Confidence 99999999999999999999998
No 9
>COG0537 Hit Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]
Probab=99.95 E-value=3.2e-27 Score=186.82 Aligned_cols=102 Identities=36% Similarity=0.535 Sum_probs=91.8
Q ss_pred CceeccccCccccccEEEEcCcEEEEecCCCCCCeEEEEEecccccCccCCChhhHHHHHHHHHHHHHHHHh---hCC-C
Q psy5899 92 NGLFDKIVRKEVPCDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAADEDAKILGHLMIVAKKVAAK---KLI-R 167 (201)
Q Consensus 92 ~C~FC~Ii~~ei~~~iv~edd~~~af~d~~P~~pGHlLVvPkrHv~~l~dLt~ee~~~l~~l~~~~k~ll~~---~l~-~ 167 (201)
.|.||.|+.+++++.+||||++++||+|.+|..+||+|||||+|+.++.++++++ +++|+..++++.++ .++ +
T Consensus 2 ~ciFc~ii~~e~~~~~Vye~~~~~afld~~P~~~gH~LviPk~h~~~l~~l~~~~---~~~l~~~~~~ia~al~~~~~~~ 78 (138)
T COG0537 2 MCIFCKIIRGEIPANKVYEDEHVLAFLDIYPAAPGHTLVIPKRHVSDLEDLDPEE---LAELFLLAQKIAKALKEAFGAD 78 (138)
T ss_pred CceeeeeecCCCCceEEEeCCCEEEEecCCCCCCCeEEEEeccchhhhhhCCHHH---HHHHHHHHHHHHHHHHHHhCCC
Confidence 6999999999999999999999999999999999999999999999999997665 56666677777666 344 8
Q ss_pred CeEEEEecccCCCCccceeEEEEEcCCCC
Q psy5899 168 NYRVVVNNGWEAVQFSGHLHLHVLGGRPL 196 (201)
Q Consensus 168 ~y~v~~n~G~~agqsv~HlHlHIIPRrkl 196 (201)
|||+.+|+|..+||.++|+|+|||||++.
T Consensus 79 g~ni~~N~g~~agq~V~HlH~HvIPr~~~ 107 (138)
T COG0537 79 GYNIGINNGKAAGQEVFHLHIHIIPRYKG 107 (138)
T ss_pred ceEEEEecCcccCcCcceEEEEEcCCcCC
Confidence 99999999999999999999999999853
No 10
>cd01275 FHIT FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Fhit plays a very important role in the development of tumours. Infact, Fhit deletions are among the earliest and most frequent genetic alterations in the development of tumours.
Probab=99.94 E-value=2.7e-26 Score=177.62 Aligned_cols=102 Identities=21% Similarity=0.247 Sum_probs=91.6
Q ss_pred ceeccccCcccc-ccEEEEcCcEEEEecCCCCCCeEEEEEecccccCccCCChhhHHHHHHHHHHHHHHHHhhCC-CCeE
Q psy5899 93 GLFDKIVRKEVP-CDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAADEDAKILGHLMIVAKKVAAKKLI-RNYR 170 (201)
Q Consensus 93 C~FC~Ii~~ei~-~~iv~edd~~~af~d~~P~~pGHlLVvPkrHv~~l~dLt~ee~~~l~~l~~~~k~ll~~~l~-~~y~ 170 (201)
|+||++++++.+ .++|+|+++++||+|.+|.+|||+||+||+|++++.+|+++|..++..++..+.+.+++.++ ++||
T Consensus 1 C~fC~i~~~e~~~~~iv~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~~~~~v~~~l~~~~~~~~~n 80 (126)
T cd01275 1 CVFCDIPIKPDEDNLVFYRTKHSFAVVNLYPYNPGHVLVVPYRHVPRLEDLTPEEIADLFKLVQLAMKALKVVYKPDGFN 80 (126)
T ss_pred CccccCccCCCccccEEEeCCCEEEEEcCCCCCCCcEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCceE
Confidence 999999999876 68999999999999999999999999999999999999999888888877655555555343 7999
Q ss_pred EEEecccCCCCccceeEEEEEcCC
Q psy5899 171 VVVNNGWEAVQFSGHLHLHVLGGR 194 (201)
Q Consensus 171 v~~n~G~~agqsv~HlHlHIIPRr 194 (201)
+.+|+|+.+||+++|+|+|||||+
T Consensus 81 ~~~~~g~~~gq~v~H~HiHiiPR~ 104 (126)
T cd01275 81 IGINDGKAGGGIVPHVHIHIVPRW 104 (126)
T ss_pred EEEeCCcccCCCcCEEEEEEeCCc
Confidence 999999988999999999999997
No 11
>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome. All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin.
Probab=99.92 E-value=6.2e-25 Score=164.32 Aligned_cols=99 Identities=33% Similarity=0.482 Sum_probs=88.9
Q ss_pred CceeccccCccc--cccEEEEcCcEEEEecCCCCCCeEEEEEecccccCccCCChhhHHHHHHHHHHHHHHHHh--hCC-
Q psy5899 92 NGLFDKIVRKEV--PCDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAADEDAKILGHLMIVAKKVAAK--KLI- 166 (201)
Q Consensus 92 ~C~FC~Ii~~ei--~~~iv~edd~~~af~d~~P~~pGHlLVvPkrHv~~l~dLt~ee~~~l~~l~~~~k~ll~~--~l~- 166 (201)
.|+||+|+++|. +.+++++|++++||.|.+|.+|||+||+||+|+.++.+|++++.++++++++.+.+.+++ .++
T Consensus 1 ~c~fc~i~~~e~~~~~~iv~~~~~~~a~~~~~p~~~~h~lIiPk~h~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~ 80 (104)
T cd01278 1 LCHFCDIAKRRDPDPEDQVYEDDRVVVFKDIYPKARHHYLVIPKEHIASLKALTKEDVPLLEHMETVGREKLLRSDNTDP 80 (104)
T ss_pred CCccccCccCCCCCCccEEEeCCCEEEEECCCCCCCceEEEEecCCCCChHHCCHhHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 399999999887 469999999999999999999999999999999999999999999999998877775544 454
Q ss_pred CCeEEEEecccCCCCccceeEEEEEc
Q psy5899 167 RNYRVVVNNGWEAVQFSGHLHLHVLG 192 (201)
Q Consensus 167 ~~y~v~~n~G~~agqsv~HlHlHIIP 192 (201)
++||+++|+||. |+++|+|+|||.
T Consensus 81 ~~~n~g~h~~p~--~~v~H~H~Hvi~ 104 (104)
T cd01278 81 SEFRFGFHAPPF--TSVSHLHLHVIA 104 (104)
T ss_pred cCeEEEeCCCCC--cCeeeEEEEeeC
Confidence 699999999985 899999999984
No 12
>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms []. Crystal structure of rabbit Hint, purified as an adenosine and AMP-binding protein, showed that proteins in the HIT superfamily are conserved as nucleotide-binding proteins and that Hint homologues, which are found in all forms of life, are structurally related to Fhit homologues and GalT-related enzymes, which have more restricted phylogenetic profiles []. Hint homologues including rabbit Hint and yeast Hnt1 hydrolyse adenosine 5' monophosphoramide substrates such as AMP-NH2 and AMP-lysine to AMP plus the amine product and function as positive regulators of Cdk7/Kin28 in vivo []. Fhit homologues are diadenosine polyphosphate hydrolases [] and function as tumour suppressors in human and mouse [] though the tumour suppressing function of Fhit does not depend on ApppA hydrolysis []. The third branch of the HIT superfamily, which includes GalT homologues, contains a related His-X-His-X-Gln motif and transfers nucleoside monophosphate moieties to phosphorylated second substrates rather than hydrolysing them [].; PDB: 3LB5_B 1EMS_A 1Y23_A 3ANO_B 1KPE_B 1KPC_A 4EQE_B 1KPA_A 1KPB_B 4EQG_B ....
Probab=99.91 E-value=1.8e-24 Score=160.33 Aligned_cols=93 Identities=41% Similarity=0.553 Sum_probs=78.0
Q ss_pred CccccccEEEEcCcEEEEecCCCCCCeEEEEEecccccCccCCChhhHHHHHHHHHHHHHHHHh---hCC-CCeEEEEec
Q psy5899 100 RKEVPCDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAADEDAKILGHLMIVAKKVAAK---KLI-RNYRVVVNN 175 (201)
Q Consensus 100 ~~ei~~~iv~edd~~~af~d~~P~~pGHlLVvPkrHv~~l~dLt~ee~~~l~~l~~~~k~ll~~---~l~-~~y~v~~n~ 175 (201)
++|+++.+|||||+++||+|.+|..|||+||+||+|++++.||++++..++.. .++++.+. .++ ++|++.+|+
T Consensus 1 ~~e~~~~vv~e~~~~~~~~~~~p~~~gh~LVipk~H~~~l~dl~~~~~~~l~~---~~~~v~~~l~~~~~~~~~~~~~~~ 77 (98)
T PF01230_consen 1 RGEIPARVVYEDDHFVAFLDIFPISPGHLLVIPKRHVESLSDLPPEERAELMQ---LVQKVAKALKEAFGPDGYNVIINN 77 (98)
T ss_dssp TTSSHCEEEEE-SSEEEEEESSTSSTTEEEEEESSTGSSGGGSHHHHHHHHHH---HHHHHHHHHHHHHTTSEEEEEEEE
T ss_pred CCCCCeeEEEECCCEEEEEcCCCCCCeEEEEEecccccchhcCCHHHHHHHHH---HHHHHHHHHhcccccceeeccccc
Confidence 36788899999999999999999999999999999999999997666544444 55555544 344 799999999
Q ss_pred ccCCCCccceeEEEEEcCCC
Q psy5899 176 GWEAVQFSGHLHLHVLGGRP 195 (201)
Q Consensus 176 G~~agqsv~HlHlHIIPRrk 195 (201)
|+.+||+++|+|+|||||++
T Consensus 78 g~~~gq~v~HlH~HviPR~~ 97 (98)
T PF01230_consen 78 GPAAGQSVPHLHFHVIPRYK 97 (98)
T ss_dssp SGGGTSSSSS-EEEEEEEST
T ss_pred hhhhcCccCEEEEEEecccC
Confidence 99999999999999999986
No 13
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=99.88 E-value=8.1e-23 Score=181.54 Aligned_cols=145 Identities=19% Similarity=0.211 Sum_probs=123.2
Q ss_pred eecCceeecCCCeEEeeeccCCccccchhhhhc-ccCCCCceeccccCcccc--ccEEEEcCcEEEEecCCCCCCeEEEE
Q psy5899 54 KEVPCDFLHEDDLLTWYVAQSSGGEQKQSVTQK-LKHRNNGLFDKIVRKEVP--CDFLHEDDLCVAFDDINPQAPEHFLV 130 (201)
Q Consensus 54 ~ei~~~~~h~~~q~~a~~~i~p~~~~~~~~~~~-~~~~~~C~FC~Ii~~ei~--~~iv~edd~~~af~d~~P~~pGHlLV 130 (201)
+++||++.|||+|++|.+.+|++.+++..++++ +...+.|.+|++++.|.. .|+|.|+|+++||+|+++++|.+++|
T Consensus 147 k~~G~S~~HPH~Qi~a~~~~P~~v~~e~~~~~~y~~~~~~~~~~~~ve~E~~~~~R~v~e~~~~~a~~Pf~a~~pfEv~i 226 (338)
T COG1085 147 KAAGASLPHPHGQIVALPVLPLEVARELRSAREYYEENGSCMYCDLVEREKGDGERIVVENDHFLAFVPFWARWPFEVLI 226 (338)
T ss_pred cccCccCCCCCcceeecccCChHHHHHHHHHHHHHHhcCCchHHHHHHHHhccCceEEecCceeEEeccccccCceEEEe
Confidence 468999999999999999999999998888776 544689999999998875 39999999999999999999999999
Q ss_pred EecccccCccCCChhhHHHHHHHHHHHHHHHHh---hCC--CCeEEEEecccCC-CCccceeEEEEEc---CC--CCCCC
Q psy5899 131 LPKKKIVSLSLAADEDAKILGHLMIVAKKVAAK---KLI--RNYRVVVNNGWEA-VQFSGHLHLHVLG---GR--PLHWP 199 (201)
Q Consensus 131 vPkrHv~~l~dLt~ee~~~l~~l~~~~k~ll~~---~l~--~~y~v~~n~G~~a-gqsv~HlHlHIIP---Rr--klkw~ 199 (201)
+||+|+..+.+|++++..+++.+ ++.++.+ .++ .+|+|++++.+.. ...-+|+|+|++| |. ++||+
T Consensus 227 ~pk~hv~~l~~~sdee~~~lA~i---lk~~~~~y~~~~~~~fpY~m~~h~ap~~~~~~~~~~h~~~~p~~~R~~t~~k~~ 303 (338)
T COG1085 227 YPKEHVSFLTDLSDEELKDLAEI---LKKLLARYDNLFGNSFPYSMGFHQAPFNEVNEHYHLHAEIYPPLLRSATKLKFL 303 (338)
T ss_pred ccHHHhhhhhhCCHHHHHHHHHH---HHHHHHHHhhccCCCCceeeeeecCCCCcccccceEEEEEccccccccccccee
Confidence 99999999999999887777774 4566555 233 3899999987754 4677999999999 54 67777
Q ss_pred CC
Q psy5899 200 PG 201 (201)
Q Consensus 200 a~ 201 (201)
+|
T Consensus 304 ~g 305 (338)
T COG1085 304 AG 305 (338)
T ss_pred ee
Confidence 65
No 14
>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups.
Probab=99.86 E-value=1.6e-21 Score=139.99 Aligned_cols=82 Identities=35% Similarity=0.443 Sum_probs=70.7
Q ss_pred EEEcCcEEEEecCCCCCCeEEEEEecccccCccCCChhhHHHHHHHHHHHHHHHHh---hCC-CCeEEEEecccCCCCcc
Q psy5899 108 LHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAADEDAKILGHLMIVAKKVAAK---KLI-RNYRVVVNNGWEAVQFS 183 (201)
Q Consensus 108 v~edd~~~af~d~~P~~pGHlLVvPkrHv~~l~dLt~ee~~~l~~l~~~~k~ll~~---~l~-~~y~v~~n~G~~agqsv 183 (201)
+||||+++||+|.+|.++||+||+||+|+.++.+|++++..++.. .++++.++ .++ ++||+.+|+|+.+||++
T Consensus 1 ~~e~~~~~a~~~~~p~~~gh~lIipk~H~~~~~~l~~~~~~~l~~---~~~~~~~~l~~~~~~~~~~~~~n~g~~~g~~v 77 (86)
T cd00468 1 VPDDEHSFAFVNLKPAAPGHVLVCPKRHVETLPDLDEALLADLVI---TAQRVAAELEKHGNVPSLTVFVNDGAAAGQSV 77 (86)
T ss_pred CeecCcEEEEECCCCCCCCcEEEeCchhhCChhHCCHHHHHHHHH---HHHHHHHHHHHhcCCCceEEEEcCCccCCCcC
Confidence 589999999999999999999999999999999998776555555 44455444 333 68999999999999999
Q ss_pred ceeEEEEEc
Q psy5899 184 GHLHLHVLG 192 (201)
Q Consensus 184 ~HlHlHIIP 192 (201)
+|+|+||||
T Consensus 78 ~H~H~hiiP 86 (86)
T cd00468 78 PHVHLHVLP 86 (86)
T ss_pred CEEEEEeCC
Confidence 999999998
No 15
>KOG3379|consensus
Probab=99.80 E-value=3.8e-19 Score=139.04 Aligned_cols=102 Identities=23% Similarity=0.330 Sum_probs=82.4
Q ss_pred CceeccccCcccc-ccEEEEcCcEEEEecCCCCCCeEEEEEecccccCccCCChhhHHHHHHHHHHHHHHHHhhCC-CCe
Q psy5899 92 NGLFDKIVRKEVP-CDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAADEDAKILGHLMIVAKKVAAKKLI-RNY 169 (201)
Q Consensus 92 ~C~FC~Ii~~ei~-~~iv~edd~~~af~d~~P~~pGHlLVvPkrHv~~l~dLt~ee~~~l~~l~~~~k~ll~~~l~-~~y 169 (201)
+-.|.+.+ ++ ..++|++++++||++..|..|||+||+|+|-++.|.||+.+|..++....+.+.++++..++ +..
T Consensus 6 ~~~F~~~~---i~~~~VFykT~~sfafvNlkPvvpgHVLv~P~R~vpRl~dLt~~E~aDlF~t~~~v~~~lek~~~~ts~ 82 (150)
T KOG3379|consen 6 SLYFGKFL---IPPDHVFYKTKHSFAFVNLKPVVPGHVLVSPLRVVPRLTDLTAAETADLFTTVQKVQRVLEKHYNATSL 82 (150)
T ss_pred cccccccc---CCcceEEEeccceEEEEeccccccceEEEeccccccccccCCcHHHHHHHHHHHHHHHHHHHHhcccce
Confidence 34555433 33 68999999999999999999999999999999999999988755555444444455555343 679
Q ss_pred EEEEecccCCCCccceeEEEEEcCCCC
Q psy5899 170 RVVVNNGWEAVQFSGHLHLHVLGGRPL 196 (201)
Q Consensus 170 ~v~~n~G~~agqsv~HlHlHIIPRrkl 196 (201)
++.+++|+.|||+|+|+|+||+||++-
T Consensus 83 ti~iQDG~~AGQTVpHvHvHIlPR~~g 109 (150)
T KOG3379|consen 83 TIAIQDGPEAGQTVPHVHVHILPRKAG 109 (150)
T ss_pred EEEeccccccCcccceeEEEEcccccc
Confidence 999999999999999999999999853
No 16
>PF11969 DcpS_C: Scavenger mRNA decapping enzyme C-term binding; PDB: 1VLR_B 1XMM_D 1XML_B 1ST0_A 3BLA_B 3BL9_B 3BL7_B 1ST4_B 1XQU_B.
Probab=99.80 E-value=1.1e-19 Score=139.61 Aligned_cols=99 Identities=36% Similarity=0.462 Sum_probs=82.4
Q ss_pred CceeccccCccccccEEEEcCcEEEEecCCCCCCeEEEEEecc-cccCccCCChhhHHHHHHHHHHHHHHHHh-hC---C
Q psy5899 92 NGLFDKIVRKEVPCDFLHEDDLCVAFDDINPQAPEHFLVLPKK-KIVSLSLAADEDAKILGHLMIVAKKVAAK-KL---I 166 (201)
Q Consensus 92 ~C~FC~Ii~~ei~~~iv~edd~~~af~d~~P~~pGHlLVvPkr-Hv~~l~dLt~ee~~~l~~l~~~~k~ll~~-~l---~ 166 (201)
.|.||.|.+++.+.+++||||++++|.|.+|..+.|+||+||+ |+.++.+|+.++.+++.+|.+.++++++. .. .
T Consensus 1 ~cif~~i~~~~~~~~vly~d~~~v~~~D~~P~a~~H~LviPk~~~i~sl~~L~~~~~~lL~~m~~~~~~~~~~~~~~~~~ 80 (116)
T PF11969_consen 1 NCIFCIIIRGEEPERVLYEDDDFVVFKDIYPKAPVHLLVIPKDPHIRSLRDLTPEHLPLLERMREVARELLKEEYPGDLD 80 (116)
T ss_dssp HHHHHHHTTSSSGGGESEEETSEEEEE-TT-SCCEEEEEEESSSS-SSGGG--GGGHHHHHHHHHHHHHHHHHHH-TT-E
T ss_pred CccceEeEcCCCCCcEEEEeCCEEEeeCCCCCcCcEEEEEeecCCCCChHHcCHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 3999999999999999999999999999999999999999999 99999999999999999999999999988 42 1
Q ss_pred -CCeEEEEecccCCCCccceeEEEEEcCC
Q psy5899 167 -RNYRVVVNNGWEAVQFSGHLHLHVLGGR 194 (201)
Q Consensus 167 -~~y~v~~n~G~~agqsv~HlHlHIIPRr 194 (201)
..++++++.. +|++|||+|+++..
T Consensus 81 ~~~~~~gfH~~----PS~~HLHlHvi~~~ 105 (116)
T PF11969_consen 81 SDDIRLGFHYP----PSVYHLHLHVISPD 105 (116)
T ss_dssp GGGEEEEEESS-----SSSS-EEEEEETT
T ss_pred hhhhcccccCC----CCcceEEEEEccCC
Confidence 4677777754 59999999999843
No 17
>KOG2958|consensus
Probab=99.67 E-value=5.7e-17 Score=140.82 Aligned_cols=135 Identities=15% Similarity=0.172 Sum_probs=107.5
Q ss_pred ecCceeecCCCeEEeeeccCCccccchhhhhc-ccCCCCceeccccCccc--cccEEEEcCcEEEEecCCCCCCeEEEEE
Q psy5899 55 EVPCDFLHEDDLLTWYVAQSSGGEQKQSVTQK-LKHRNNGLFDKIVRKEV--PCDFLHEDDLCVAFDDINPQAPEHFLVL 131 (201)
Q Consensus 55 ei~~~~~h~~~q~~a~~~i~p~~~~~~~~~~~-~~~~~~C~FC~Ii~~ei--~~~iv~edd~~~af~d~~P~~pGHlLVv 131 (201)
.+||...|||||..|.+.+|+...+++....+ .+..+.|.+-+..+-|. +.++|.|+++|++++|+++.+|+++|++
T Consensus 162 ~mGcSn~HpHgQ~wal~~lP~~vs~e~~s~kkyfe~hgk~ll~dy~~~E~l~Kervv~enehfivvvPywA~wPfEtlli 241 (354)
T KOG2958|consen 162 AMGCSNPHPHGQAWALPVLPSTVSQELDSQKKYFEEHGKCLLMDYVKQEALEKERVVVENEHFIVVVPYWATWPFETLLI 241 (354)
T ss_pred ccccCCCCcccceeecccCCcHHHHHhhhHHHHHHHcCCchHHHHHHHHHhhhceEEeecCceEEEeehhhcCcceeeee
Confidence 58999999999999999999987777766666 33347899955444332 3499999999999999999999999999
Q ss_pred ecccccCccCCChhhHHHHHHHHHHHHHHHHh---hCC--CCeEEEEecccCCC----CccceeEEEEEc
Q psy5899 132 PKKKIVSLSLAADEDAKILGHLMIVAKKVAAK---KLI--RNYRVVVNNGWEAV----QFSGHLHLHVLG 192 (201)
Q Consensus 132 PkrHv~~l~dLt~ee~~~l~~l~~~~k~ll~~---~l~--~~y~v~~n~G~~ag----qsv~HlHlHIIP 192 (201)
||+|++++.+|++-+..+|+.++ |.++.+ .++ .+|+|+++..|..+ ..-..+|+|++|
T Consensus 242 pk~h~~~~~~l~~~~k~dLasiL---K~ll~KydnlfetsfPYsmg~h~aPl~~t~~e~~n~W~h~hFyp 308 (354)
T KOG2958|consen 242 PKRHVSRFHELDEVEKVDLASIL---KLLLIKYDNLFETSFPYSMGIHGAPLGSTEQENYNHWLHMHFYP 308 (354)
T ss_pred chhhhhhhcccchHHHhhHHHHH---HHHHHHHHHhhccCCccccccccCCcccccccccchhhhhhccc
Confidence 99999999999988888888754 455544 334 49999999988642 222347999998
No 18
>PF02744 GalP_UDP_tr_C: Galactose-1-phosphate uridyl transferase, C-terminal domain; InterPro: IPR005850 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C.
Probab=99.66 E-value=2.3e-16 Score=128.44 Aligned_cols=108 Identities=19% Similarity=0.217 Sum_probs=65.6
Q ss_pred CCceeccccCcccc--ccEEEEcCcEEEEecCCCCCCeEEEEEecccccCccCCChhhHHHHHHHHHHHHHHHHh---hC
Q psy5899 91 NNGLFDKIVRKEVP--CDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAADEDAKILGHLMIVAKKVAAK---KL 165 (201)
Q Consensus 91 ~~C~FC~Ii~~ei~--~~iv~edd~~~af~d~~P~~pGHlLVvPkrHv~~l~dLt~ee~~~l~~l~~~~k~ll~~---~l 165 (201)
+.|+||++++.|.. .++|+++++|++|+|.++++|++++|+||+|+.++.+|+++|...|+. +++.++++ .+
T Consensus 13 Gs~L~~D~~~~E~~~~~Riv~en~~f~a~vP~~a~wP~ev~ilpkrh~~~l~~l~~~E~~dlA~---~l~~i~~r~d~lf 89 (166)
T PF02744_consen 13 GSCLFCDHLQMELAEGERIVYENEHFVAFVPFAARWPFEVWILPKRHVPSLADLTDEERDDLAA---ILKPILRRYDNLF 89 (166)
T ss_dssp SS-HHHHHHHHHHHH-TTEEEE-SSEEEE--TT--STT-EEEEESS--SSGGG--HHHHHHHHH---HHHHHHHHHHHHC
T ss_pred CCchHHHHHHHhhcCCCEEEEECCceEEEEECcccCCcEEEEecCCChhhHHHhhhHHHhhHHH---HHHHHHHHhcccC
Confidence 78999999987764 399999999999999999999999999999999999999998888887 44566555 34
Q ss_pred C--CCeEEEEecccCCCCcc-ceeEEEEEc---CC--CCCCCCC
Q psy5899 166 I--RNYRVVVNNGWEAVQFS-GHLHLHVLG---GR--PLHWPPG 201 (201)
Q Consensus 166 ~--~~y~v~~n~G~~agqsv-~HlHlHIIP---Rr--klkw~a~ 201 (201)
+ .+|++++++.|..+..- .++|+|+.| |+ ..|+++|
T Consensus 90 ~~~~pY~m~ihqaP~~~~~~~~~fH~H~e~~~ir~~~i~k~~vG 133 (166)
T PF02744_consen 90 ETSFPYNMGIHQAPVNGEDPEHWFHPHFEPPHIRSENIGKFEVG 133 (166)
T ss_dssp TS---EEEEEE---SSSS--TT--EEEEE--BESSTTEB----T
T ss_pred CCCCCCchhhhcCCCCcccchhhhhcccccccccccccceeeee
Confidence 4 59999999999765433 225555554 22 3466655
No 19
>KOG4359|consensus
Probab=99.56 E-value=2.4e-14 Score=112.60 Aligned_cols=100 Identities=26% Similarity=0.392 Sum_probs=86.8
Q ss_pred CCceeccccCccc--cccEEEEcCcEEEEecCCCCCCeEEEEEecccccCccCCChhhHHHHHHHHHHHHHHHHh-hC-C
Q psy5899 91 NNGLFDKIVRKEV--PCDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAADEDAKILGHLMIVAKKVAAK-KL-I 166 (201)
Q Consensus 91 ~~C~FC~Ii~~ei--~~~iv~edd~~~af~d~~P~~pGHlLVvPkrHv~~l~dLt~ee~~~l~~l~~~~k~ll~~-~l-~ 166 (201)
..|.||+|..+.. +.....|++.+++|.|++|...-|.|++||+|+.+..+|+.++..++..+++..+.++++ .. +
T Consensus 31 ~~C~FCDia~r~~~~~ell~~En~~~V~fkDikPaA~~HYLvipK~Hi~~~~~L~k~~V~Lve~m~~~G~~~l~r~~~td 110 (166)
T KOG4359|consen 31 STCVFCDIAGRQDPGTELLHCENEDLVCFKDIKPAATHHYLVVPKKHIGNCRTLRKDQVELVENMVTVGKTILERNNFTD 110 (166)
T ss_pred CceEEEEeecccCCCCceeEecCCcEEEEecCCccccceEEEechHHcCChhhcchhhHHHHHHHHHHHHHHHHHhccCC
Confidence 5899999987543 336788999999999999999999999999999999999999999999999999998888 32 2
Q ss_pred -CCeEEEEecccCCCCccceeEEEEEc
Q psy5899 167 -RNYRVVVNNGWEAVQFSGHLHLHVLG 192 (201)
Q Consensus 167 -~~y~v~~n~G~~agqsv~HlHlHIIP 192 (201)
+..+++++..| .-||.|||+|+|-
T Consensus 111 ~~~~r~GFHLPP--f~SV~HLHlH~I~ 135 (166)
T KOG4359|consen 111 FTNVRMGFHLPP--FCSVSHLHLHVIA 135 (166)
T ss_pred chheeEeccCCC--cceeeeeeEeeec
Confidence 56778888766 5899999999994
No 20
>KOG3275|consensus
Probab=99.34 E-value=6.8e-14 Score=106.99 Aligned_cols=76 Identities=29% Similarity=0.306 Sum_probs=65.1
Q ss_pred cCCceeceeeeeecCceeecCCCeEEeeeccCCccccchhhhhcccCCCCceeccccCccccccEEEEcCcEEEEecCCC
Q psy5899 43 RNNGLFDKIVRKEVPCDFLHEDDLLTWYVAQSSGGEQKQSVTQKLKHRNNGLFDKIVRKEVPCDFLHEDDLCVAFDDINP 122 (201)
Q Consensus 43 ~~~~~~~~~~r~ei~~~~~h~~~q~~a~~~i~p~~~~~~~~~~~~~~~~~C~FC~Ii~~ei~~~iv~edd~~~af~d~~P 122 (201)
.++|||+|||||||||++++||++|+||.|+.| | ++.+|..|+++.+++....||.+--
T Consensus 15 ~~~tIF~kIi~keIPa~ii~Edd~~lAF~Di~P-----q---------ap~HfLvIPK~hi~~~s~aed~~~e------- 73 (127)
T KOG3275|consen 15 AAPTIFCKIIRKEIPAKIIFEDDRCLAFHDIAP-----Q---------APGHFLVIPKKHITQLSKAEDRDDE------- 73 (127)
T ss_pred CCCcEeeeeecccCCcceEeeccceEEEEecCC-----C---------CCceEEEeecccccchhhcccCCHH-------
Confidence 489999999999999999999999999999996 5 5889999999988777777776654
Q ss_pred CCCeEEEEEecccccCcc
Q psy5899 123 QAPEHFLVLPKKKIVSLS 140 (201)
Q Consensus 123 ~~pGHlLVvPkrHv~~l~ 140 (201)
..||+|.+.|+.++.+.
T Consensus 74 -~Lg~ll~~~k~vak~~G 90 (127)
T KOG3275|consen 74 -LLGHLLPVAKKVAKALG 90 (127)
T ss_pred -HHHHHHHHHHHHHHHhC
Confidence 77888888888766554
No 21
>PF04677 CwfJ_C_1: Protein similar to CwfJ C-terminus 1; InterPro: IPR006768 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues. Cwf19 is part of the Cdc5p complex involved in mRNA splicing []. This domain is found in association with IPR006767 from INTERPRO, which is generally C-terminal and adjacent to this domain.
Probab=98.96 E-value=1.3e-08 Score=78.94 Aligned_cols=98 Identities=15% Similarity=0.101 Sum_probs=72.9
Q ss_pred CCceeccccCccccccEEEEcCcEEEEecCCCCCCeEEEEEecccccCccCCChhhHHHHHHHHHHHHHHHHhhCCCCeE
Q psy5899 91 NNGLFDKIVRKEVPCDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAADEDAKILGHLMIVAKKVAAKKLIRNYR 170 (201)
Q Consensus 91 ~~C~FC~Ii~~ei~~~iv~edd~~~af~d~~P~~pGHlLVvPkrHv~~l~dLt~ee~~~l~~l~~~~k~ll~~~l~~~y~ 170 (201)
++|.||-=..+-....++.-++++++.+|..|..+||++|+|-.|++++.+++++.++++..+...++++.++ .+.+..
T Consensus 11 ~~C~fCl~n~~~~khliisiG~~~YLalpkg~L~~gH~lIvPi~H~~s~~~~de~~~~Ei~~f~~~L~~mf~~-~~~~vv 89 (121)
T PF04677_consen 11 DNCWFCLSNPNVEKHLIISIGDEVYLALPKGPLVPGHCLIVPIQHVPSLTELDEEVWEEIRNFQKSLRKMFAS-QGKDVV 89 (121)
T ss_pred CCCCCccCCCCccceEEEEEcCcEEEEeCCCCccCCEEEEEecceecccccCCHHHHHHHHHHHHHHHHHHHH-cCCCEE
Confidence 6899995322222348999999999999999999999999999999999999988888888877666666544 122221
Q ss_pred EEEecccCCCCccceeEEEEEcC
Q psy5899 171 VVVNNGWEAVQFSGHLHLHVLGG 193 (201)
Q Consensus 171 v~~n~G~~agqsv~HlHlHIIPR 193 (201)
+ +-.. .....|+|+++||-
T Consensus 90 f-~E~~---~~~~~H~~iq~vPv 108 (121)
T PF04677_consen 90 F-FERV---RKRNPHTHIQCVPV 108 (121)
T ss_pred E-EEEe---CCCCcEEEEEEEEc
Confidence 1 1111 34458999999993
No 22
>KOG2476|consensus
Probab=98.40 E-value=1.3e-06 Score=80.80 Aligned_cols=97 Identities=16% Similarity=0.081 Sum_probs=72.3
Q ss_pred CCceeccccCccccccEEEEcCcEEEEecCCCCCCeEEEEEecccccCccCCChhhHHHHHHHHHHHHHHHHh-hCCCCe
Q psy5899 91 NNGLFDKIVRKEVPCDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAADEDAKILGHLMIVAKKVAAK-KLIRNY 169 (201)
Q Consensus 91 ~~C~FC~Ii~~ei~~~iv~edd~~~af~d~~P~~pGHlLVvPkrHv~~l~dLt~ee~~~l~~l~~~~k~ll~~-~l~~~y 169 (201)
++|+||--.-.-....||.-++++++-++..|...+|+||+|..|++++..|+++..+++.++-..++++.+. +- +..
T Consensus 319 g~CwFCLSnP~vEkHLIVsIG~~~YlAlaKGpLs~~HvlIipi~H~p~~~~ls~ev~~Ei~kykaal~~myk~~g~-~~v 397 (528)
T KOG2476|consen 319 GSCWFCLSNPNVEKHLIVSIGNHFYLALAKGPLSSDHVLIIPIEHIPSLVPLSAEVTQEINKYKAALRKMYKKQGK-DAV 397 (528)
T ss_pred CceEEEecCCChhhheEEEecceeEEeecCCCCCCCeEEEEEcccccccccCCHHHHHHHHHHHHHHHHHHHhcCC-eEE
Confidence 6899995332222458999999999999999999999999999999999999988888888877766666554 21 111
Q ss_pred EEEEecccCCCCccceeEEEEEcC
Q psy5899 170 RVVVNNGWEAVQFSGHLHLHVLGG 193 (201)
Q Consensus 170 ~v~~n~G~~agqsv~HlHlHIIPR 193 (201)
..-.. ..-.-|+|+.+||-
T Consensus 398 vfE~~-----~~rs~Hlq~Qvipv 416 (528)
T KOG2476|consen 398 VFERQ-----SYRSVHLQLQVIPV 416 (528)
T ss_pred EEEee-----cccceeeEEEEEec
Confidence 11110 12235999999994
No 23
>KOG0562|consensus
Probab=98.13 E-value=2.1e-06 Score=69.77 Aligned_cols=88 Identities=28% Similarity=0.298 Sum_probs=57.6
Q ss_pred cEEEEc-CcEEEEecCCCCCCeEEEEEec-ccccCccCCChhhHHHHHHHHHHHHHHHHh-hCCCCeEEEEecccCCCCc
Q psy5899 106 DFLHED-DLCVAFDDINPQAPEHFLVLPK-KKIVSLSLAADEDAKILGHLMIVAKKVAAK-KLIRNYRVVVNNGWEAVQF 182 (201)
Q Consensus 106 ~iv~ed-d~~~af~d~~P~~pGHlLVvPk-rHv~~l~dLt~ee~~~l~~l~~~~k~ll~~-~l~~~y~v~~n~G~~agqs 182 (201)
.+..|+ |.++++.|.+|.+..|+||.|+ .-++++.+...+....+.++-.+...+... +-+ .....++.|.+++.+
T Consensus 16 ~V~~es~d~vvvIrD~fPKa~~H~LvLpr~s~i~~l~~~~qe~l~ll~~~h~~~~~~v~~~~~~-~~~~~f~vG~HavPS 94 (184)
T KOG0562|consen 16 NVYIESPDDVVVIRDKFPKARMHLLVLPRRSSIDSLFSVVQEHLSLLKEDHAVGPCWVDQLTNE-ALCNYFRVGFHAVPS 94 (184)
T ss_pred eeeccCcccEEEEcccCccceeEEEEecccchhHHHHHHHHHHhhHhHHHhhcCchHHHHhcch-hhhhheeeeeccCcc
Confidence 455555 7999999999999999999996 345556666555555555544444334333 111 111234445567889
Q ss_pred cceeEEEEEcCC
Q psy5899 183 SGHLHLHVLGGR 194 (201)
Q Consensus 183 v~HlHlHIIPRr 194 (201)
+.++|+|||...
T Consensus 95 M~~LHLHVISkD 106 (184)
T KOG0562|consen 95 MNNLHLHVISKD 106 (184)
T ss_pred hhheeEEEeecc
Confidence 999999999864
No 24
>KOG3969|consensus
Probab=97.25 E-value=0.0022 Score=56.22 Aligned_cols=86 Identities=15% Similarity=0.207 Sum_probs=61.2
Q ss_pred cccEEEEcCc----EEEEecC--CCC--CCeEEE-EEecccccCccCCChhhHHHHHHHHHHHHHHHHh--hCC-CCeEE
Q psy5899 104 PCDFLHEDDL----CVAFDDI--NPQ--APEHFL-VLPKKKIVSLSLAADEDAKILGHLMIVAKKVAAK--KLI-RNYRV 171 (201)
Q Consensus 104 ~~~iv~edd~----~~af~d~--~P~--~pGHlL-VvPkrHv~~l~dLt~ee~~~l~~l~~~~k~ll~~--~l~-~~y~v 171 (201)
..++||||.+ |+.+.|. .+. -.-+++ |+=++-++++.||++++.+.|..+-+.++.++.. +++ +-..|
T Consensus 159 ~driV~ed~d~~nGFillPDlKWdgqtld~LyllaIvhr~dikSiRDL~~~h~~lL~n~r~k~~~~i~~~y~v~~dqlrm 238 (310)
T KOG3969|consen 159 DDRIVYEDPDPENGFILLPDLKWDGQTLDSLYLLAIVHRRDIKSIRDLRPSHLQLLRNIRNKSREAIPQRYGVDPDQLRM 238 (310)
T ss_pred ccceEEecCCCcCCeEEccccccCcccccceeEEEEEecCCcchhhhCCHHHHHHHHHHHHHHHHHHHHHhCCCchhEEE
Confidence 3489998754 3445453 222 123444 4445568999999999999999988888887766 554 56788
Q ss_pred EEecccCCCCccceeEEEEEcC
Q psy5899 172 VVNNGWEAVQFSGHLHLHVLGG 193 (201)
Q Consensus 172 ~~n~G~~agqsv~HlHlHIIPR 193 (201)
.++. ..|.+|||+||++-
T Consensus 239 f~HY----qPSyYHlHVHi~ni 256 (310)
T KOG3969|consen 239 FFHY----QPSYYHLHVHIVNI 256 (310)
T ss_pred EEEe----cCceEEEEEEEEec
Confidence 8876 45789999999983
No 25
>PLN03103 GDP-L-galactose-hexose-1-phosphate guanyltransferase; Provisional
Probab=97.01 E-value=0.0023 Score=58.94 Aligned_cols=73 Identities=21% Similarity=0.205 Sum_probs=47.0
Q ss_pred EcCcEEEEecCCCCCCeEEEEEecc--cccCccCCChhhHHHHHHHHHHHHHHHHhhCCCCeEEEEecccCCCCccceeE
Q psy5899 110 EDDLCVAFDDINPQAPEHFLVLPKK--KIVSLSLAADEDAKILGHLMIVAKKVAAKKLIRNYRVVVNNGWEAVQFSGHLH 187 (201)
Q Consensus 110 edd~~~af~d~~P~~pGHlLVvPkr--Hv~~l~dLt~ee~~~l~~l~~~~k~ll~~~l~~~y~v~~n~G~~agqsv~HlH 187 (201)
++....++.+.+|..+||+++||.. |.+.. ++.+ .+. .+-.++...-+..|++++|. .-|..+++|+|
T Consensus 167 ~~s~~~VlINvsPI~~gH~LlvP~~~~~lPQ~--i~~~---~l~----la~~~a~~~~~p~frvgYNS-lGA~ASvNHLH 236 (403)
T PLN03103 167 SNSPNVVAINVSPIEYGHVLLVPRVLDCLPQR--IDPD---SFL----LALYMAAEANNPYFRVGYNS-LGAFATINHLH 236 (403)
T ss_pred CCCccEEEEeCCCCccCeEEEcCCcccCCCeE--ecHH---HHH----HHHHHHHhcCCCcEEEEecC-CccccCcceee
Confidence 3555688999999999999999764 55443 2221 121 22222222112468998886 44556999999
Q ss_pred EEEEc
Q psy5899 188 LHVLG 192 (201)
Q Consensus 188 lHIIP 192 (201)
+|.+-
T Consensus 237 FQa~y 241 (403)
T PLN03103 237 FQAYY 241 (403)
T ss_pred eeecc
Confidence 99985
No 26
>KOG2477|consensus
Probab=96.77 E-value=0.01 Score=56.08 Aligned_cols=99 Identities=10% Similarity=-0.019 Sum_probs=68.8
Q ss_pred CCceeccccCccccccEEEEcCcEEEEecCCC-CCCeEEEEEecccccCccCCChhhHHHHHHHHHHHHHHHHh-hCCCC
Q psy5899 91 NNGLFDKIVRKEVPCDFLHEDDLCVAFDDINP-QAPEHFLVLPKKKIVSLSLAADEDAKILGHLMIVAKKVAAK-KLIRN 168 (201)
Q Consensus 91 ~~C~FC~Ii~~ei~~~iv~edd~~~af~d~~P-~~pGHlLVvPkrHv~~l~dLt~ee~~~l~~l~~~~k~ll~~-~l~~~ 168 (201)
.+|.+|--..+.....+|.-....++-+|..| ...||++|+|-.|..+-..|+++.++++.-+..-+-.+... +. +
T Consensus 407 D~C~rCfds~klpkhlviSlg~~tYLsLp~~~gL~~gHciIvptqH~~~t~slDEdvWDEIrnfrKcL~~Mfas~n~--d 484 (628)
T KOG2477|consen 407 DTCPRCFDSEKLPKHLVISLGHRTYLSLPTQPGLAKGHCIIVPTQHRINTLSLDEDVWDEIRNFRKCLALMFASMNL--D 484 (628)
T ss_pred hhchhhhcccccccceeEEeccceeEeccccCccccCceEEecccccccccccchHHHHHHHHHHHHHHHHHHhcCC--C
Confidence 68999965555445688888889998888765 57999999999999999899877777776655433233222 33 2
Q ss_pred eEEEEecccCCCCccceeEEEEEcC
Q psy5899 169 YRVVVNNGWEAVQFSGHLHLHVLGG 193 (201)
Q Consensus 169 y~v~~n~G~~agqsv~HlHlHIIPR 193 (201)
..+. -+.+ .-+.-+|+-+|.||-
T Consensus 485 viFy-E~a~-~l~rrpH~~IeCIPv 507 (628)
T KOG2477|consen 485 VIFY-ENAP-SLQRRPHTAIECIPV 507 (628)
T ss_pred eEEE-eccC-ccccCCceeEEEeec
Confidence 2221 1112 135579999999994
No 27
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
Probab=96.48 E-value=0.015 Score=52.12 Aligned_cols=63 Identities=11% Similarity=0.093 Sum_probs=44.0
Q ss_pred EEEEEecccccCccCCChhhHHHHHHHHHHHHHHHHh-h-CC-CCe-EEEEecccCCCCccceeEEEEEc
Q psy5899 127 HFLVLPKKKIVSLSLAADEDAKILGHLMIVAKKVAAK-K-LI-RNY-RVVVNNGWEAVQFSGHLHLHVLG 192 (201)
Q Consensus 127 HlLVvPkrHv~~l~dLt~ee~~~l~~l~~~~k~ll~~-~-l~-~~y-~v~~n~G~~agqsv~HlHlHIIP 192 (201)
.++|...+|-.++.+++.++. ..++..-++-.+. . .+ -.| .+..|.|+.+|.|+.|-|.+|+.
T Consensus 95 eVii~sp~H~~~l~~~~~~~i---~~v~~~~~~r~~~l~~~~~~~yv~if~N~G~~aGaSl~HpH~Qi~a 161 (329)
T cd00608 95 EVICFSPDHNLTLAEMSVAEI---REVVEAWAERTRELGKNPRIKYVQIFENKGAEMGASLPHPHGQIWA 161 (329)
T ss_pred EEEEECCcccCChhhCCHHHH---HHHHHHHHHHHHHHhcCCCCcEEEEEeecCcccccCCCCCCeeeee
Confidence 788889999999999987654 4433333333333 1 11 245 45678899999999999999885
No 28
>COG4360 APA2 ATP adenylyltransferase (5',5'''-P-1,P-4-tetraphosphate phosphorylase II) [Nucleotide transport and metabolism]
Probab=96.44 E-value=0.0046 Score=53.47 Aligned_cols=72 Identities=22% Similarity=0.155 Sum_probs=51.4
Q ss_pred CcEEEEecCCCCCCeEEEEEecccccCccCCChhhHHHHHHHHHHHHHHHHhhCCCCeEEEEecccCCCCccceeEEEEE
Q psy5899 112 DLCVAFDDINPQAPEHFLVLPKKKIVSLSLAADEDAKILGHLMIVAKKVAAKKLIRNYRVVVNNGWEAVQFSGHLHLHVL 191 (201)
Q Consensus 112 d~~~af~d~~P~~pGHlLVvPkrHv~~l~dLt~ee~~~l~~l~~~~k~ll~~~l~~~y~v~~n~G~~agqsv~HlHlHII 191 (201)
+.-..+++.+|..+.|+|||.++--..=+.||..| +..++.++ .. + +| .+..|.||.+|.|.+|=|+.++
T Consensus 92 ~th~~llNKF~VVdeHlLiVTrefedQ~s~LTl~D---f~ta~~vL----~~-l-dg-lvFYNsGp~aGaSq~HkHLQi~ 161 (298)
T COG4360 92 DTHKLLLNKFPVVDEHLLIVTREFEDQESALTLAD---FTTAYAVL----CG-L-DG-LVFYNSGPIAGASQDHKHLQIV 161 (298)
T ss_pred hhHhhhhhcCCcccceeEEeehhhhhccccCCHHH---HHHHHHHH----hc-c-cc-eEEecCCCCcCcCCCccceeEe
Confidence 34466789999999999999998765555666544 22222222 11 1 44 4568899999999999999999
Q ss_pred cC
Q psy5899 192 GG 193 (201)
Q Consensus 192 PR 193 (201)
|.
T Consensus 162 pm 163 (298)
T COG4360 162 PM 163 (298)
T ss_pred ec
Confidence 84
No 29
>PLN02643 ADP-glucose phosphorylase
Probab=95.36 E-value=0.13 Score=46.41 Aligned_cols=64 Identities=20% Similarity=0.189 Sum_probs=43.4
Q ss_pred eEEEEEecccccCccCCChhhHHHHHHHHHHHHHHHHh-hCC--CCeE-EEEecccCCCCccceeEEEEEc
Q psy5899 126 EHFLVLPKKKIVSLSLAADEDAKILGHLMIVAKKVAAK-KLI--RNYR-VVVNNGWEAVQFSGHLHLHVLG 192 (201)
Q Consensus 126 GHlLVvPkrHv~~l~dLt~ee~~~l~~l~~~~k~ll~~-~l~--~~y~-v~~n~G~~agqsv~HlHlHIIP 192 (201)
-+++|..-+|..+|.+++.++. ..++.+-++-.+. .-+ -.|. +.-|.|..+|.|+.|-|-.|+.
T Consensus 108 ~eVii~sp~H~~~l~~~~~~~i---~~v~~~~~~r~~~l~~~~~i~yv~iF~N~G~~aGaSl~HPH~Qi~a 175 (336)
T PLN02643 108 HDVVIETPVHSVQLSDLPARHI---GEVLKAYKKRINQLQSDSRFKYVQVFKNHGASAGASMSHSHSQIIA 175 (336)
T ss_pred EEEEEeCCccCCChHHCCHHHH---HHHHHHHHHHHHHHhcCCCceEEEEEeecCccCCcCCCCCceeeEe
Confidence 3577778899999999987654 4433333232222 111 1453 4677899999999999999985
No 30
>PRK10687 purine nucleoside phosphoramidase; Provisional
Probab=95.12 E-value=0.014 Score=44.92 Aligned_cols=32 Identities=34% Similarity=0.665 Sum_probs=29.8
Q ss_pred CceeceeeeeecCceeecCCCeEEeeeccCCc
Q psy5899 45 NGLFDKIVRKEVPCDFLHEDDLLTWYVAQSSG 76 (201)
Q Consensus 45 ~~~~~~~~r~ei~~~~~h~~~q~~a~~~i~p~ 76 (201)
+.+|-||++.|+|+++.||++.++||.++.|.
T Consensus 4 ~CiFC~I~~g~~p~~~v~edd~~~aflD~~P~ 35 (119)
T PRK10687 4 ETIFSKIIRREIPSDIVYQDELVTAFRDISPQ 35 (119)
T ss_pred CCchhhhhcCCCCCCEEEECCCEEEEEcCCCC
Confidence 57999999999999999999999999999873
No 31
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=94.69 E-value=0.12 Score=46.82 Aligned_cols=62 Identities=15% Similarity=0.114 Sum_probs=43.8
Q ss_pred EEEEecccccCccCCChhhHHHHHHHHHHHHHHHHh-hC--CCCe-EEEEecccCCCCccceeEEEEEc
Q psy5899 128 FLVLPKKKIVSLSLAADEDAKILGHLMIVAKKVAAK-KL--IRNY-RVVVNNGWEAVQFSGHLHLHVLG 192 (201)
Q Consensus 128 lLVvPkrHv~~l~dLt~ee~~~l~~l~~~~k~ll~~-~l--~~~y-~v~~n~G~~agqsv~HlHlHIIP 192 (201)
++|-...|-.++.+|+.++. .+++.+.++..+. .- .-.| .+..|.|+.+|.|..|-|..|+.
T Consensus 97 VIvesp~H~~~l~~~~~~~~---~~vv~~~~e~~~~L~~~~~~~yV~iF~N~Gk~~G~S~~HPH~Qi~a 162 (338)
T COG1085 97 VIVESPDHSKTLPELPVEEI---EEVVKLWQERVRELYEREKYKYVQIFENKGKAAGASLPHPHGQIVA 162 (338)
T ss_pred EEEECCcccCccccCCHHHH---HHHHHHHHHHHHHHhhccCcceEEeeeccCcccCccCCCCCcceee
Confidence 56667899999999987664 4444444455444 11 1234 56778899999999999999884
No 32
>KOG2720|consensus
Probab=94.46 E-value=0.037 Score=50.15 Aligned_cols=72 Identities=21% Similarity=0.245 Sum_probs=41.1
Q ss_pred EcCcEEEEecCCCCCCeEEEEEecccccCccCCChhhHHHHHHHHHHHHHHHHhhCC-CCeEEEEecccCCCCccceeEE
Q psy5899 110 EDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAADEDAKILGHLMIVAKKVAAKKLI-RNYRVVVNNGWEAVQFSGHLHL 188 (201)
Q Consensus 110 edd~~~af~d~~P~~pGHlLVvPkrHv~~l~dLt~ee~~~l~~l~~~~k~ll~~~l~-~~y~v~~n~G~~agqsv~HlHl 188 (201)
|+.. ++..+..|.-.||+||+|+----.---++-+ .+.- .+ .+... .+ +-|++++|. ..+..+|+|||+
T Consensus 165 e~~~-vvaIN~sPie~~H~LiiP~V~kc~pQrit~~---al~l---av-~~m~~-~dd~~frlgyNS-lga~AsVNHLHf 234 (431)
T KOG2720|consen 165 ENSP-VVAINVSPIEYGHVLIIPRVLKCLPQRITHK---ALLL---AV-TMMAE-ADDPYFRLGYNS-LGAFASVNHLHF 234 (431)
T ss_pred ccCc-eEEEecCccccCcEEEecchhccCcceeeHH---HHHH---HH-HHHHh-cCCchhheeccc-chhhhhhhhhhh
Confidence 4445 6777888999999999997432111122211 1111 11 11111 13 345677665 224689999999
Q ss_pred EEE
Q psy5899 189 HVL 191 (201)
Q Consensus 189 HII 191 (201)
|.+
T Consensus 235 ha~ 237 (431)
T KOG2720|consen 235 HAY 237 (431)
T ss_pred hhh
Confidence 987
No 33
>PRK05471 CDP-diacylglycerol pyrophosphatase; Provisional
Probab=94.07 E-value=0.26 Score=42.91 Aligned_cols=65 Identities=15% Similarity=0.301 Sum_probs=41.6
Q ss_pred CCeEEEEEecccccCccC---CChhhHHHHHHHHHHHHHHHHh--h--CC-CCeEEEEecccCCCCccceeEEEEE
Q psy5899 124 APEHFLVLPKKKIVSLSL---AADEDAKILGHLMIVAKKVAAK--K--LI-RNYRVVVNNGWEAVQFSGHLHLHVL 191 (201)
Q Consensus 124 ~pGHlLVvPkrHv~~l~d---Lt~ee~~~l~~l~~~~k~ll~~--~--l~-~~y~v~~n~G~~agqsv~HlHlHII 191 (201)
.|.|.|++|...++.+.+ +++.....+..--. ++..+.. + ++ +...+.+|.- .|.+.+|||+||=
T Consensus 72 Gp~qyLLiPt~rIsGIEsP~Ll~~~tpnyf~~AW~-aR~~v~~~~g~pipd~~lsLaINS~--~gRSQnQLHIHIs 144 (252)
T PRK05471 72 GPLQYLLMPTYRISGIESPLLLEPSTPNYFALAWQ-ARDFMSKKYGKPIPDSAVSLAINSR--YGRTQDQLHIHIS 144 (252)
T ss_pred CCcceEEeecccccCccCccccCCCCccHHHHHHH-HhHHHHHhhCCCCChhheEEEecCC--CCccccceeeehh
Confidence 899999999999877654 23333334444332 3333333 2 33 3566788763 3788999999985
No 34
>TIGR00672 cdh CDP-diacylglycerol pyrophosphatase, bacterial type. Alternate names for this enzyme include CDP-diglyceride hydrolase and CDP-diacylglycerol hydrolase.
Probab=94.02 E-value=0.27 Score=42.72 Aligned_cols=76 Identities=17% Similarity=0.316 Sum_probs=47.0
Q ss_pred cCcEEEEecCCCCCCeEEEEEecccccCccC---CChhhHHHHHHHHHHHHHHHHh--h--CC-CCeEEEEecccCCCCc
Q psy5899 111 DDLCVAFDDINPQAPEHFLVLPKKKIVSLSL---AADEDAKILGHLMIVAKKVAAK--K--LI-RNYRVVVNNGWEAVQF 182 (201)
Q Consensus 111 dd~~~af~d~~P~~pGHlLVvPkrHv~~l~d---Lt~ee~~~l~~l~~~~k~ll~~--~--l~-~~y~v~~n~G~~agqs 182 (201)
+..++++.|. ..|.|.|++|...++.+.+ +++.....+..-- .++..+.. + ++ +...+.+|.- .|.+
T Consensus 60 ~~gyvvlKD~--~Gp~qyLLmPt~rIsGIEsP~Ll~~~tpnyf~~AW-~aR~~v~~~~g~pipd~~lsLaINS~--~gRS 134 (250)
T TIGR00672 60 NAGYVVLKDL--NGPLQYLLMPTYRINGTESPLLLDPSTPNFFWLAW-QARDFMSKKYGQPIPDRAVSLAINSR--TGRS 134 (250)
T ss_pred CCCeEEEeCC--CCCceeEEeeccccCCccChhhcCCCCccHHHHHH-HHhHHHHHhcCCCCChhheeEEecCC--CCcc
Confidence 3444444444 3899999999999877663 2333344444433 23444433 2 33 3566788764 3788
Q ss_pred cceeEEEEE
Q psy5899 183 SGHLHLHVL 191 (201)
Q Consensus 183 v~HlHlHII 191 (201)
.+|||+||=
T Consensus 135 QnQLHIHIs 143 (250)
T TIGR00672 135 QNHFHIHIS 143 (250)
T ss_pred cccceeeHh
Confidence 999999984
No 35
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=93.94 E-value=0.32 Score=44.06 Aligned_cols=64 Identities=11% Similarity=0.038 Sum_probs=44.0
Q ss_pred eEEEEEecccccCccCCChhhHHHHHHHHHHHHHHHHh-hCCCCeE-EEEecccCCCCccceeEEEEEc
Q psy5899 126 EHFLVLPKKKIVSLSLAADEDAKILGHLMIVAKKVAAK-KLIRNYR-VVVNNGWEAVQFSGHLHLHVLG 192 (201)
Q Consensus 126 GHlLVvPkrHv~~l~dLt~ee~~~l~~l~~~~k~ll~~-~l~~~y~-v~~n~G~~agqsv~HlHlHIIP 192 (201)
-+++|...+|..+|.+|+.++. ..++.+-++-.+. .-+-.|. +.-|.|..+|.|+.|-|-.|+.
T Consensus 106 ~eViv~sp~H~~~l~~~~~~~i---~~v~~~~~~r~~~l~~~i~yv~iF~N~G~~~GaSl~HPH~Qi~a 171 (346)
T PRK11720 106 SRVICFSPDHSKTLPELSVAAL---REVVDTWQEQTAELGKTYPWVQVFENKGAAMGCSNPHPHGQIWA 171 (346)
T ss_pred EEEEEECCCcCCChhHCCHHHH---HHHHHHHHHHHHHHHhCCcEEEEEeecCcccCcCCCCCceeeee
Confidence 4678888999999999987664 4433333333333 1113454 4567799999999999999984
No 36
>COG0537 Hit Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]
Probab=93.92 E-value=0.067 Score=42.18 Aligned_cols=32 Identities=25% Similarity=0.410 Sum_probs=30.1
Q ss_pred CceeceeeeeecCceeecCCCeEEeeeccCCc
Q psy5899 45 NGLFDKIVRKEVPCDFLHEDDLLTWYVAQSSG 76 (201)
Q Consensus 45 ~~~~~~~~r~ei~~~~~h~~~q~~a~~~i~p~ 76 (201)
+++|.||++.|+|+.+.++++..+||-++.|.
T Consensus 2 ~ciFc~ii~~e~~~~~Vye~~~~~afld~~P~ 33 (138)
T COG0537 2 MCIFCKIIRGEIPANKVYEDEHVLAFLDIYPA 33 (138)
T ss_pred CceeeeeecCCCCceEEEeCCCEEEEecCCCC
Confidence 68999999999999999999999999999873
No 37
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=93.06 E-value=0.72 Score=41.85 Aligned_cols=64 Identities=9% Similarity=0.022 Sum_probs=43.6
Q ss_pred eEEEEEecccccCccCCChhhHHHHHHHHHHHHHHHHh-hCCCCeE-EEEecccCCCCccceeEEEEEc
Q psy5899 126 EHFLVLPKKKIVSLSLAADEDAKILGHLMIVAKKVAAK-KLIRNYR-VVVNNGWEAVQFSGHLHLHVLG 192 (201)
Q Consensus 126 GHlLVvPkrHv~~l~dLt~ee~~~l~~l~~~~k~ll~~-~l~~~y~-v~~n~G~~agqsv~HlHlHIIP 192 (201)
-+++|-.-+|-.+|.+|+.++...+-.+ -++-.+. .-.-.|. +.-|.|..+|.|..|-|-.|+.
T Consensus 106 ~eVii~sp~H~~~l~~m~~~~i~~v~~~---~~~r~~~l~~~i~yv~iF~N~G~~~GaSl~HPH~Qi~a 171 (347)
T TIGR00209 106 SRVICFSPDHSKTLPELSVAALTEIVKT---WQEQTAELGKTYPWVQIFENKGAAMGCSNPHPHGQIWA 171 (347)
T ss_pred EEEEEeCCCccCChhHCCHHHHHHHHHH---HHHHHHHHHhCCcEEEEEeecCcccCcCCCCCceeeee
Confidence 4678888899999999987764444333 2232222 2112454 4567799999999999999884
No 38
>PF02611 CDH: CDP-diacylglycerol pyrophosphatase; InterPro: IPR003763 The CDP-diacylglycerol pyrophosphatases 3.6.1.26 from EC play a role in the regulation of phospholipid metabolism by inositol, as well as regulating the cellular levels of phosphatidylinositol [].; GO: 0008715 CDP-diacylglycerol diphosphatase activity, 0008654 phospholipid biosynthetic process, 0016020 membrane; PDB: 2POF_A.
Probab=92.48 E-value=0.45 Score=40.75 Aligned_cols=76 Identities=17% Similarity=0.351 Sum_probs=36.3
Q ss_pred cCcEEEEecCCCCCCeEEEEEecccccCccC---CChhhHHHHHHHHHHHHHHH-Hh---hCC-CCeEEEEecccCCCCc
Q psy5899 111 DDLCVAFDDINPQAPEHFLVLPKKKIVSLSL---AADEDAKILGHLMIVAKKVA-AK---KLI-RNYRVVVNNGWEAVQF 182 (201)
Q Consensus 111 dd~~~af~d~~P~~pGHlLVvPkrHv~~l~d---Lt~ee~~~l~~l~~~~k~ll-~~---~l~-~~y~v~~n~G~~agqs 182 (201)
+..++++.| +..+.|.|++|..-++.+.+ +++.....++.--. ++..+ ++ .++ +.+.+.+|... |.+
T Consensus 32 ~~gyvvlKd--~~G~~qyLL~Pt~rIsGIEsP~Ll~~~~pNyf~~AW~-aR~~v~~~~g~~lpd~~lsLaINS~~--gRs 106 (222)
T PF02611_consen 32 QQGYVVLKD--RNGPLQYLLMPTDRISGIESPALLEPRTPNYFADAWQ-ARGFVSQKLGKPLPDDDLSLAINSQY--GRS 106 (222)
T ss_dssp TTTEEEEE---SSSSS-EEEEESS---STT-GGGGSTTS--HHHHHHH-TTHHHHHHHTS---GGGEEEEEB-GG--G-S
T ss_pred CCCEEEEeC--CCCCccEEEeeccccCCccChhhcCCCCccHHHHHHH-hhHHHHHhcCCCCCccceEEEecCcc--Ccc
Confidence 445555554 34789999999999877654 23444444544332 22222 22 233 46788888643 788
Q ss_pred cceeEEEEE
Q psy5899 183 SGHLHLHVL 191 (201)
Q Consensus 183 v~HlHlHII 191 (201)
-+|||+||=
T Consensus 107 QdQLHIHis 115 (222)
T PF02611_consen 107 QDQLHIHIS 115 (222)
T ss_dssp --S--EEEE
T ss_pred ccceEeEhh
Confidence 899999985
No 39
>COG5075 Uncharacterized conserved protein [Function unknown]
Probab=91.99 E-value=0.28 Score=42.68 Aligned_cols=85 Identities=15% Similarity=0.099 Sum_probs=49.2
Q ss_pred cccEEEEcCcEE----EEecC--CCC---CCeEEEEEecccccCccCCChhhHHHHHHHHHHHHHHHHh--hCC-CCeEE
Q psy5899 104 PCDFLHEDDLCV----AFDDI--NPQ---APEHFLVLPKKKIVSLSLAADEDAKILGHLMIVAKKVAAK--KLI-RNYRV 171 (201)
Q Consensus 104 ~~~iv~edd~~~----af~d~--~P~---~pGHlLVvPkrHv~~l~dLt~ee~~~l~~l~~~~k~ll~~--~l~-~~y~v 171 (201)
..+++|||+... ++.|. .+. +.+-+.|+-+.-++++.||...++..+..+-......... +++ +...|
T Consensus 154 ~erivyed~~~~ngfiiiPD~KWd~qt~dsL~l~aIv~~~diktiRDlr~~~i~~l~rl~~kiltevp~~f~vd~n~l~m 233 (305)
T COG5075 154 NERIVYEDESVINGFIIIPDMKWDGQTVDSLYLVAIVYRTDIKTIRDLRYYHILWLIRLNNKILTEVPYQFGVDPNELRM 233 (305)
T ss_pred cceeEecCcccccCceeccccccCccceeeeeEEEEEecCCchhhhhCchhhhhHHHhhcccceEecchhcCcChhHeEE
Confidence 358999988754 34443 222 2333344445568888999877766555543322111111 232 34556
Q ss_pred EEecccCCCCccceeEEEEEc
Q psy5899 172 VVNNGWEAVQFSGHLHLHVLG 192 (201)
Q Consensus 172 ~~n~G~~agqsv~HlHlHIIP 192 (201)
.++. ..+.+|+|+||+-
T Consensus 234 fvHY----~PsYyhlHvHI~n 250 (305)
T COG5075 234 FVHY----QPSYYHLHVHIVN 250 (305)
T ss_pred EEEe----ccceEEEEEEEEe
Confidence 6665 4578999999985
No 40
>PF01087 GalP_UDP_transf: Galactose-1-phosphate uridyl transferase, N-terminal domain; InterPro: IPR005849 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C 1Z84_B 1ZWJ_A 2Q4L_A 2H39_B 2Q4H_A.
Probab=91.14 E-value=0.08 Score=43.53 Aligned_cols=21 Identities=10% Similarity=0.009 Sum_probs=16.6
Q ss_pred eecCceeecCCCeEEeeeccC
Q psy5899 54 KEVPCDFLHEDDLLTWYVAQS 74 (201)
Q Consensus 54 ~ei~~~~~h~~~q~~a~~~i~ 74 (201)
.+.|+++.|||+||+|++++|
T Consensus 163 ~~~GaSl~HpHsQi~a~~~vP 183 (183)
T PF01087_consen 163 YEAGASLPHPHSQIIALPHVP 183 (183)
T ss_dssp GGGT-SSSSSEEEEEEESS--
T ss_pred CcCCCCCCCCceEEecCCccC
Confidence 467999999999999999875
No 41
>PF11969 DcpS_C: Scavenger mRNA decapping enzyme C-term binding; PDB: 1VLR_B 1XMM_D 1XML_B 1ST0_A 3BLA_B 3BL9_B 3BL7_B 1ST4_B 1XQU_B.
Probab=89.82 E-value=0.1 Score=39.80 Aligned_cols=43 Identities=26% Similarity=0.213 Sum_probs=35.6
Q ss_pred CceeceeeeeecCceeecCCCeEEeeeccCCccccchhhhhcccCCCCceeccccCc
Q psy5899 45 NGLFDKIVRKEVPCDFLHEDDLLTWYVAQSSGGEQKQSVTQKLKHRNNGLFDKIVRK 101 (201)
Q Consensus 45 ~~~~~~~~r~ei~~~~~h~~~q~~a~~~i~p~~~~~~~~~~~~~~~~~C~FC~Ii~~ 101 (201)
+.+|.+|+++|.+.++.|+|+.+.+|.|+.|. ++.+++.|+++
T Consensus 1 ~cif~~i~~~~~~~~vly~d~~~v~~~D~~P~--------------a~~H~LviPk~ 43 (116)
T PF11969_consen 1 NCIFCIIIRGEEPERVLYEDDDFVVFKDIYPK--------------APVHLLVIPKD 43 (116)
T ss_dssp HHHHHHHTTSSSGGGESEEETSEEEEE-TT-S--------------CCEEEEEEESS
T ss_pred CccceEeEcCCCCCcEEEEeCCEEEeeCCCCC--------------cCcEEEEEeec
Confidence 35799999999999999999999999998862 36788888876
No 42
>COG2134 Cdh CDP-diacylglycerol pyrophosphatase [Lipid metabolism]
Probab=88.44 E-value=3.5 Score=35.28 Aligned_cols=84 Identities=14% Similarity=0.176 Sum_probs=49.7
Q ss_pred CCceeccccCccccccEEEEcCcEEEEecCCCCCCeEEEEEecccccCccC---CChhhHHHHHHHHHHHHHHHHh--h-
Q psy5899 91 NNGLFDKIVRKEVPCDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSL---AADEDAKILGHLMIVAKKVAAK--K- 164 (201)
Q Consensus 91 ~~C~FC~Ii~~ei~~~iv~edd~~~af~d~~P~~pGHlLVvPkrHv~~l~d---Lt~ee~~~l~~l~~~~k~ll~~--~- 164 (201)
.||.+-+..+ +..++.|.+ -|...|++|--++..+.+ ++++...-+..-- .++....+ +
T Consensus 53 aPCaeV~~~A----G~av~Kd~~----------gPlQyLLmPt~rItGiEsP~L~e~atpNyf~~AW-qAR~fms~kyg~ 117 (252)
T COG2134 53 APCAEVKPQA----GYAVLKDRN----------GPLQYLLMPTARITGIESPLLLEPATPNYFYLAW-QARDFMSKKYGN 117 (252)
T ss_pred CCceeecCCC----ceEEEeccC----------CCceeEeeeeecccCCcChhhcCCCCccHHHHHH-HHHHHHHHHhCC
Confidence 4677766543 356666665 678889999999876653 2222232333222 34444333 2
Q ss_pred -CC-CCeEEEEecccCCCCccceeEEEEE
Q psy5899 165 -LI-RNYRVVVNNGWEAVQFSGHLHLHVL 191 (201)
Q Consensus 165 -l~-~~y~v~~n~G~~agqsv~HlHlHII 191 (201)
++ ....+.+|.. .|.+.+|+|+||-
T Consensus 118 ~ipd~dvsLaINs~--~gRtQdqlHIHIS 144 (252)
T COG2134 118 PIPDSDVSLAINSK--NGRTQDQLHIHIS 144 (252)
T ss_pred CCCccceEEEecCc--cCccccceEEEEE
Confidence 23 2556677643 4778899999985
No 43
>PF01087 GalP_UDP_transf: Galactose-1-phosphate uridyl transferase, N-terminal domain; InterPro: IPR005849 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C 1Z84_B 1ZWJ_A 2Q4L_A 2H39_B 2Q4H_A.
Probab=83.85 E-value=4 Score=33.44 Aligned_cols=65 Identities=15% Similarity=0.114 Sum_probs=38.0
Q ss_pred EEEEEecccccCccCCChhhHHHHHHHHHHHHHHHHhhCC-CCeE-EEEecccCCCCccceeEEEEEc
Q psy5899 127 HFLVLPKKKIVSLSLAADEDAKILGHLMIVAKKVAAKKLI-RNYR-VVVNNGWEAVQFSGHLHLHVLG 192 (201)
Q Consensus 127 HlLVvPkrHv~~l~dLt~ee~~~l~~l~~~~k~ll~~~l~-~~y~-v~~n~G~~agqsv~HlHlHIIP 192 (201)
+++|-.-+|-.++.+|+.++...+..++..-..-+.+ -+ -.|. +.-|.|..+|.+..|-|-.|+.
T Consensus 112 EViIe~p~h~~~~~~~~~~~~~~i~~a~~~r~~~l~~-~~~~~yv~~FeN~G~~~GaSl~HpHsQi~a 178 (183)
T PF01087_consen 112 EVIIESPKHERTLADMSVKEIKEILKAWRDRYRELSS-DKYIKYVLIFENEGYEAGASLPHPHSQIIA 178 (183)
T ss_dssp EEEES-SSTT--GGGS-HHHHHHHHHHHHHHHHHHCT--TT-SEEEEEEEESGGGT-SSSSSEEEEEE
T ss_pred EEEEeCCCCCCChhhCCHHHHHHHHHHHHHHHHHHhc-cCCcceEEEEEecCCcCCCCCCCCceEEec
Confidence 6777778899999999877655554433211111111 11 1454 4567799999999999999985
No 44
>cd01276 PKCI_related Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.
Probab=79.33 E-value=1.6 Score=31.75 Aligned_cols=31 Identities=29% Similarity=0.448 Sum_probs=27.8
Q ss_pred CceeceeeeeecCceeecCCCeEEeeeccCC
Q psy5899 45 NGLFDKIVRKEVPCDFLHEDDLLTWYVAQSS 75 (201)
Q Consensus 45 ~~~~~~~~r~ei~~~~~h~~~q~~a~~~i~p 75 (201)
|-+|.+|+++|++..+.++++.++||.+..|
T Consensus 1 ~C~fc~i~~~e~~~~iv~e~~~~~a~~~~~p 31 (104)
T cd01276 1 DCIFCKIIRGEIPAKKVYEDDEVLAFHDINP 31 (104)
T ss_pred CCcceecccCCCccCEEEECCCEEEEECCCC
Confidence 3579999999999999999999999998765
No 45
>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms []. Crystal structure of rabbit Hint, purified as an adenosine and AMP-binding protein, showed that proteins in the HIT superfamily are conserved as nucleotide-binding proteins and that Hint homologues, which are found in all forms of life, are structurally related to Fhit homologues and GalT-related enzymes, which have more restricted phylogenetic profiles []. Hint homologues including rabbit Hint and yeast Hnt1 hydrolyse adenosine 5' monophosphoramide substrates such as AMP-NH2 and AMP-lysine to AMP plus the amine product and function as positive regulators of Cdk7/Kin28 in vivo []. Fhit homologues are diadenosine polyphosphate hydrolases [] and function as tumour suppressors in human and mouse [] though the tumour suppressing function of Fhit does not depend on ApppA hydrolysis []. The third branch of the HIT superfamily, which includes GalT homologues, contains a related His-X-His-X-Gln motif and transfers nucleoside monophosphate moieties to phosphorylated second substrates rather than hydrolysing them [].; PDB: 3LB5_B 1EMS_A 1Y23_A 3ANO_B 1KPE_B 1KPC_A 4EQE_B 1KPA_A 1KPB_B 4EQG_B ....
Probab=70.32 E-value=4 Score=29.42 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.3
Q ss_pred eeecCceeecCCCeEEeeeccCC
Q psy5899 53 RKEVPCDFLHEDDLLTWYVAQSS 75 (201)
Q Consensus 53 r~ei~~~~~h~~~q~~a~~~i~p 75 (201)
|.|++.++.++++.+++|.+..|
T Consensus 1 ~~e~~~~vv~e~~~~~~~~~~~p 23 (98)
T PF01230_consen 1 RGEIPARVVYEDDHFVAFLDIFP 23 (98)
T ss_dssp TTSSHCEEEEE-SSEEEEEESST
T ss_pred CCCCCeeEEEECCCEEEEEcCCC
Confidence 67899999999999999999886
No 46
>PF14317 YcxB: YcxB-like protein
Probab=63.39 E-value=18 Score=22.99 Aligned_cols=38 Identities=11% Similarity=0.175 Sum_probs=24.6
Q ss_pred cEEEEcCcEEEEecCCCCCCeEEEEEecccccCccCCChhhHHHHHHH
Q psy5899 106 DFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAADEDAKILGHL 153 (201)
Q Consensus 106 ~iv~edd~~~af~d~~P~~pGHlLVvPkrHv~~l~dLt~ee~~~l~~l 153 (201)
.-+.|+++.+.+.- ..+..+++||+. +++++.+.+..+
T Consensus 23 ~~v~e~~~~~~l~~----~~~~~~~iPk~~------f~~~e~~~f~~~ 60 (62)
T PF14317_consen 23 KKVVETKDYFYLYL----GKNQAFIIPKRA------FSEEEKEEFREF 60 (62)
T ss_pred EEEEEeCCEEEEEE----CCCeEEEEEHHH------CCHhHHHHHHHH
Confidence 34677777776644 556899999985 334455555554
No 47
>cd01277 HINT_subgroup HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides. This subgroup includes members from all three forms of cellular life. Although the biochemical function has not been characterised for many of the members of this subgroup, the proteins from Yeast have been shown to be involved in secretion, peroxisome formation and gene expression.
Probab=54.55 E-value=11 Score=27.02 Aligned_cols=32 Identities=25% Similarity=0.395 Sum_probs=27.9
Q ss_pred CceeceeeeeecCceeecCCCeEEeeeccCCc
Q psy5899 45 NGLFDKIVRKEVPCDFLHEDDLLTWYVAQSSG 76 (201)
Q Consensus 45 ~~~~~~~~r~ei~~~~~h~~~q~~a~~~i~p~ 76 (201)
|-+|-+|+++|.+.++.++++..+||....|+
T Consensus 1 ~C~~c~ii~~e~~~~iv~e~~~~~a~~~~~~~ 32 (103)
T cd01277 1 DCIFCKIIAGEIPSYKVYEDDHVLAFLDINPA 32 (103)
T ss_pred CCccccccCCCCCCCEEEeCCCEEEEECCCCC
Confidence 34788999999999999999999999887764
No 48
>PF03432 Relaxase: Relaxase/Mobilisation nuclease domain ; InterPro: IPR005094 Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalysing trans-esterification [].
Probab=47.17 E-value=38 Score=28.01 Aligned_cols=33 Identities=27% Similarity=0.357 Sum_probs=22.0
Q ss_pred HHHHHHHHHh-hCC-CCeEEEEecccCCCCccceeEEEEEc
Q psy5899 154 MIVAKKVAAK-KLI-RNYRVVVNNGWEAVQFSGHLHLHVLG 192 (201)
Q Consensus 154 ~~~~k~ll~~-~l~-~~y~v~~n~G~~agqsv~HlHlHIIP 192 (201)
.+++..+++. +.+ ..|.++.|. +-.|.|+||+=
T Consensus 75 ~~~~~~~~~~~~~~~~~~v~~~H~------D~~h~H~Hivi 109 (242)
T PF03432_consen 75 HEIAREFAEEMGPGNHQYVVVVHT------DTDHPHVHIVI 109 (242)
T ss_pred HHHHHHHHHHcCCCCcceEEEECC------CcCeeeeeEEE
Confidence 3355577776 553 467777664 34799999985
No 49
>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome. All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin.
Probab=46.81 E-value=16 Score=26.42 Aligned_cols=30 Identities=23% Similarity=0.272 Sum_probs=26.0
Q ss_pred eeceeeeeec--CceeecCCCeEEeeeccCCc
Q psy5899 47 LFDKIVRKEV--PCDFLHEDDLLTWYVAQSSG 76 (201)
Q Consensus 47 ~~~~~~r~ei--~~~~~h~~~q~~a~~~i~p~ 76 (201)
+|-+|+.+|. +..+.++++.++|+.+..|+
T Consensus 3 ~fc~i~~~e~~~~~~iv~~~~~~~a~~~~~p~ 34 (104)
T cd01278 3 HFCDIAKRRDPDPEDQVYEDDRVVVFKDIYPK 34 (104)
T ss_pred ccccCccCCCCCCccEEEeCCCEEEEECCCCC
Confidence 6788998887 68999999999999998764
No 50
>KOG3210|consensus
Probab=42.80 E-value=7.9 Score=32.24 Aligned_cols=40 Identities=28% Similarity=0.184 Sum_probs=30.8
Q ss_pred CCchHHHHHHHhhhhhhhhccccchhhhhhhcccccCCcee
Q psy5899 8 AGNSALVALVIQLTWYVAQSSGGEQKQSFTQKLKHRNNGLF 48 (201)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (201)
.|.+++|-++--|.--|.|..-|.|-++|||. .+-.|-+|
T Consensus 109 ~nek~~~~tL~~lkv~V~RN~FG~QaqSFT~~-~~~snfi~ 148 (226)
T KOG3210|consen 109 SNEKKLVKTLNLLKVKVKRNAFGRQAQSFTRI-CDFSNFIP 148 (226)
T ss_pred cCCcchhhhhhheeEEEeeccccchhhhheeh-hccccccc
Confidence 45667777777777788999999999999998 55555554
No 51
>PF09928 DUF2160: Predicted small integral membrane protein (DUF2160); InterPro: IPR018678 The members of this family of hypothetical prokaryotic proteins have no known function. It is thought that they are transmembrane proteins, but their function has not been inferred yet.
Probab=42.41 E-value=19 Score=26.46 Aligned_cols=39 Identities=15% Similarity=0.297 Sum_probs=30.3
Q ss_pred HHHHHHhhhhhhhhccccchhhhhhhcccccCCceeceee
Q psy5899 13 LVALVIQLTWYVAQSSGGEQKQSFTQKLKHRNNGLFDKIV 52 (201)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (201)
++++.+-+|..--++. +..|.||-...|-|||.+|=+.+
T Consensus 15 I~~~L~~mtvwe~~~P-~~~R~GfLpi~TTRGDRLFIsLL 53 (88)
T PF09928_consen 15 IALMLAGMTVWEIRSP-TVERKGFLPIETTRGDRLFISLL 53 (88)
T ss_pred HHHHHHHHHHHHhcCC-CCCcCceecccCCCcchhHHHHH
Confidence 4455566676655555 99999999999999999986654
No 52
>PRK13878 conjugal transfer relaxase TraI; Provisional
Probab=36.14 E-value=41 Score=33.83 Aligned_cols=32 Identities=16% Similarity=0.248 Sum_probs=22.6
Q ss_pred HHHHHHHh-hCC-CCeEEEEecccCCCCccceeEEEEEcC
Q psy5899 156 VAKKVAAK-KLI-RNYRVVVNNGWEAVQFSGHLHLHVLGG 193 (201)
Q Consensus 156 ~~k~ll~~-~l~-~~y~v~~n~G~~agqsv~HlHlHIIPR 193 (201)
++.++++. +++ ..|.+..|. +..|+|+||+-.
T Consensus 89 I~~~~~~~LG~~~hQ~Vva~H~------DTdh~HiHIviN 122 (746)
T PRK13878 89 IEERICAGLGYGEHQRVSAVHH------DTDNLHIHIAIN 122 (746)
T ss_pred HHHHHHHHhCCCCceEEEEEEC------CCCCceeEEEEe
Confidence 44566666 665 578888764 458999999953
No 53
>PF01076 Mob_Pre: Plasmid recombination enzyme; InterPro: IPR001668 With some plasmids, recombination can occur in a site specific manner that is independent of RecA. In such cases, the recombination event requires another protein called Pre. Pre is a plasmid recombination enzyme. This protein is also known as Mob (conjugative mobilisation) [].; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005727 extrachromosomal circular DNA
Probab=31.86 E-value=1.3e+02 Score=24.73 Aligned_cols=41 Identities=12% Similarity=0.024 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHhhCC--CCeEEEEecccCCCCccceeEEEEEcCC
Q psy5899 150 LGHLMIVAKKVAAKKLI--RNYRVVVNNGWEAVQFSGHLHLHVLGGR 194 (201)
Q Consensus 150 l~~l~~~~k~ll~~~l~--~~y~v~~n~G~~agqsv~HlHlHIIPRr 194 (201)
..+.++..-+.+...++ .-++..+|. ..+.||+|+-++|..
T Consensus 100 ~~~~~~~~~~~~~~r~g~~ni~~a~vH~----DE~tPH~H~~~vP~~ 142 (196)
T PF01076_consen 100 QKRWFEDSLEWLQERYGNENIVSAVVHL----DETTPHMHFDVVPID 142 (196)
T ss_pred HHHHHHHHHHHHHHHCCchhEEEEEEEC----CCCCcceEEEEeecc
Confidence 44444444445444333 345666664 456899999999954
No 54
>cd01275 FHIT FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Fhit plays a very important role in the development of tumours. Infact, Fhit deletions are among the earliest and most frequent genetic alterations in the development of tumours.
Probab=26.67 E-value=52 Score=24.70 Aligned_cols=30 Identities=13% Similarity=-0.160 Sum_probs=25.7
Q ss_pred eeceeeeeecC-ceeecCCCeEEeeeccCCc
Q psy5899 47 LFDKIVRKEVP-CDFLHEDDLLTWYVAQSSG 76 (201)
Q Consensus 47 ~~~~~~r~ei~-~~~~h~~~q~~a~~~i~p~ 76 (201)
+|.+|+..|++ ..+.++++.+++|.+..|.
T Consensus 2 ~fC~i~~~e~~~~~iv~e~~~~~~~~~~~p~ 32 (126)
T cd01275 2 VFCDIPIKPDEDNLVFYRTKHSFAVVNLYPY 32 (126)
T ss_pred ccccCccCCCccccEEEeCCCEEEEEcCCCC
Confidence 57889988887 7899999999999987764
No 55
>COG2928 Uncharacterized conserved protein [Function unknown]
Probab=26.62 E-value=1.7e+02 Score=25.14 Aligned_cols=30 Identities=27% Similarity=0.535 Sum_probs=24.9
Q ss_pred cCcEEEEecCCCC-CCeEEEEEecccccCcc
Q psy5899 111 DDLCVAFDDINPQ-APEHFLVLPKKKIVSLS 140 (201)
Q Consensus 111 dd~~~af~d~~P~-~pGHlLVvPkrHv~~l~ 140 (201)
++...+|+|..|. .-|.++++||+-+..+.
T Consensus 152 ~~~v~VfvPTTPNPTsGfl~~Vpkedi~~ld 182 (222)
T COG2928 152 RPMVAVFVPTTPNPTSGFLLLVPKEDIVPLD 182 (222)
T ss_pred CceEEEEcCCCCCCCcceEEEEEHHHceecc
Confidence 4788999999887 68999999999876443
No 56
>COG1943 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=26.01 E-value=1.3e+02 Score=23.34 Aligned_cols=19 Identities=26% Similarity=0.303 Sum_probs=14.7
Q ss_pred CCCCeEEEEEecccccCcc
Q psy5899 122 PQAPEHFLVLPKKKIVSLS 140 (201)
Q Consensus 122 P~~pGHlLVvPkrHv~~l~ 140 (201)
+..++|+.++||.-.+-|.
T Consensus 10 ~~~~yH~v~~~kyRr~vl~ 28 (136)
T COG1943 10 YGLKYHFVWVPKYRRKVLT 28 (136)
T ss_pred eCCcEEEEEeccCchHhhh
Confidence 3478999999998766554
No 57
>PF01446 Rep_1: Replication protein; InterPro: IPR000989 Replication proteins (rep) are involved in plasmid replication. The Rep protein binds to the plasmid DNA and nicks it at the double strand origin (dso) of replication. The 3'-hydroxyl end created is extended by the host DNA replicase, and the 5' end is displaced during synthesis. At the end of one replication round, Rep introduces a second single stranded break at the dso and ligates the ssDNA extremities generating one double-stranded plasmid and one circular ssDNA form. Complementary strand synthesis of the circular ssDNA is usually initiated at the single-stranded origin by the host RNA polymerase [].; GO: 0003677 DNA binding, 0006260 DNA replication, 0005727 extrachromosomal circular DNA
Probab=24.56 E-value=3.6e+02 Score=22.98 Aligned_cols=42 Identities=24% Similarity=0.251 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHh-hC--C-CCeEE--EEecccCCCCccceeEEEEE
Q psy5899 148 KILGHLMIVAKKVAAK-KL--I-RNYRV--VVNNGWEAVQFSGHLHLHVL 191 (201)
Q Consensus 148 ~~l~~l~~~~k~ll~~-~l--~-~~y~v--~~n~G~~agqsv~HlHlHII 191 (201)
+.+..|....+++.+. .. + .||.= -+..|. ....+|-|+||+
T Consensus 40 ~~l~~m~~a~~rl~~~k~~~~~~~G~ir~~EvT~~~--~~g~~HPH~Hvl 87 (233)
T PF01446_consen 40 DTLDHMNKAFRRLFKRKRFKKNVLGYIRSTEVTYNK--ENGSWHPHFHVL 87 (233)
T ss_pred HHHHHHHHHHHHHHhccchhcccceEEEEEEEecCC--CCCeeccceEEE
Confidence 3466666666666655 22 2 24432 222222 133578888887
No 58
>TIGR03793 TOMM_pelo TOMM propeptide domain. This model represents a domain that is conserved among a large number of putative thiazole/oxazole-modified microcins (TOMM). Oddly, most of this seqence region appears homologous to nitrile hydratase subunits. This family is expanded especially in Pelotomaculum thermopropionicum SI.
Probab=23.80 E-value=91 Score=22.19 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=16.0
Q ss_pred eEEEEEecccccCccCCChhhHHH
Q psy5899 126 EHFLVLPKKKIVSLSLAADEDAKI 149 (201)
Q Consensus 126 GHlLVvPkrHv~~l~dLt~ee~~~ 149 (201)
-|.||+|.+... +||+++.+.
T Consensus 53 ~~~lVlP~~P~~---~lse~~L~~ 73 (77)
T TIGR03793 53 VLYLVLPVNPDI---ELTDEQLDA 73 (77)
T ss_pred eEEEEecCCCCC---CCCHHHHHH
Confidence 478999999977 788776443
Done!