RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5899
(201 letters)
>gnl|CDD|238607 cd01276, PKCI_related, Protein Kinase C Interacting protein related
(PKCI): PKCI and related proteins belong to the
ubiquitous HIT family of hydrolases that act on
alpha-phosphates of ribonucleotides. The members of this
subgroup have a conserved HxHxHxx motif (x is a
hydrophobic residue) that is a signature for this
family. No enzymatic activity has been reported however,
for PKCI and its related members.
Length = 104
Score = 140 bits (356), Expect = 2e-43
Identities = 54/102 (52%), Positives = 69/102 (67%), Gaps = 2/102 (1%)
Query: 94 LFDKIVRKEVPCDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAADEDAKILGHL 153
+F KI+R E+P ++EDD +AF DINPQAP H LV+PKK I SLS A +ED ++LGHL
Sbjct: 3 IFCKIIRGEIPAKKVYEDDEVLAFHDINPQAPVHILVIPKKHIASLSDATEEDEELLGHL 62
Query: 154 MIVAKKVAAKKLIRN--YRVVVNNGWEAVQFSGHLHLHVLGG 193
+ A KVA I YR+V+N G + Q HLHLH+LGG
Sbjct: 63 LSAAAKVAKDLGIAEDGYRLVINCGKDGGQEVFHLHLHLLGG 104
>gnl|CDD|221348 pfam11969, DcpS_C, Scavenger mRNA decapping enzyme C-term binding.
This family consists of several scavenger mRNA decapping
enzymes (DcpS) and is the C-terminal region. DcpS is a
scavenger pyrophosphatase that hydrolyses the residual
cap structure following 3' to 5' decay of an mRNA. The
association of DcpS with 3' to 5' exonuclease exosome
components suggests that these two activities are linked
and there is a coupled exonucleolytic decay-dependent
decapping pathway. The C-terminal domain contains a
histidine triad (HIT) sequence with three histidines
separated by hydrophobic residues. The central histidine
within the DcpS HIT motif is critical for decapping
activity and defines the HIT motif as a new mRNA
decapping domain, making DcpS the first member of the
HIT family of proteins with a defined biological
function.
Length = 113
Score = 105 bits (264), Expect = 1e-29
Identities = 44/99 (44%), Positives = 57/99 (57%)
Query: 94 LFDKIVRKEVPCDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAADEDAKILGHL 153
+F I+ E P ++EDD VAF DI P+AP H LV+PKK I SL E +LGH+
Sbjct: 3 VFCIIINGEEPERIVYEDDGFVAFKDIKPKAPLHLLVIPKKHIKSLRDLTKEHLPLLGHM 62
Query: 154 MIVAKKVAAKKLIRNYRVVVNNGWEAVQFSGHLHLHVLG 192
VAKK+A +K YR V+ G+ HLHLHV+
Sbjct: 63 REVAKKIAKEKYNEGYRDVLRLGFHYGPSVYHLHLHVIA 101
>gnl|CDD|216377 pfam01230, HIT, HIT domain.
Length = 97
Score = 95.5 bits (238), Expect = 6e-26
Identities = 48/100 (48%), Positives = 59/100 (59%), Gaps = 6/100 (6%)
Query: 100 RKEVPCDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAADEDAKILGHLMIVAKK 159
R E+P ++EDDL +AF DI+PQAP H LV+PKK I L D + LG LM AKK
Sbjct: 1 RGEIPSKVVYEDDLVLAFLDIDPQAPGHVLVIPKKHITELH---DLTPEELGDLMSEAKK 57
Query: 160 VAA---KKLIRNYRVVVNNGWEAVQFSGHLHLHVLGGRPL 196
VA K YR+V+NNG A Q HLH+HV+ R
Sbjct: 58 VARALGKAKADGYRIVINNGAAAGQSVPHLHIHVIPRREG 97
>gnl|CDD|182648 PRK10687, PRK10687, purine nucleoside phosphoramidase; Provisional.
Length = 119
Score = 95.0 bits (236), Expect = 2e-25
Identities = 42/105 (40%), Positives = 69/105 (65%), Gaps = 2/105 (1%)
Query: 94 LFDKIVRKEVPCDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAADEDAKILGHL 153
+F KI+R+E+P D +++D+L AF DI+PQAP H L++P I +++ + E + LG +
Sbjct: 6 IFSKIIRREIPSDIVYQDELVTAFRDISPQAPTHILIIPNILIPTVNDVSAEHEQALGRM 65
Query: 154 MIVAKKVAAKKLIRN--YRVVVNNGWEAVQFSGHLHLHVLGGRPL 196
+ VA K+A ++ I YR+++N Q H+H+H+LGGRPL
Sbjct: 66 ITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIHMHLLGGRPL 110
>gnl|CDD|223611 COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other
HIT family hydrolases [Nucleotide transport and
metabolism / Carbohydrate transport and metabolism /
General function prediction only].
Length = 138
Score = 94.7 bits (236), Expect = 4e-25
Identities = 40/113 (35%), Positives = 61/113 (53%), Gaps = 9/113 (7%)
Query: 94 LFDKIVRKEVPCDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAADEDAKILGHL 153
+F KI+R E+P + ++ED+ +AF DI P AP H LV+PK+ + L D D + L L
Sbjct: 4 IFCKIIRGEIPANKVYEDEHVLAFLDIYPAAPGHTLVIPKRHVSDLE---DLDPEELAEL 60
Query: 154 MIVAKKVAAKKLIRN-----YRVVVNNGWEAVQFSGHLHLHVLGGRPLHWPPG 201
++A+K+ AK L Y + +NNG A Q HLH+H++
Sbjct: 61 FLLAQKI-AKALKEAFGADGYNIGINNGKAAGQEVFHLHIHIIPRYKGDDNFP 112
>gnl|CDD|238608 cd01277, HINT_subgroup, HINT (histidine triad nucleotide-binding
protein) subgroup: Members of this CD belong to the
superfamily of histidine triad hydrolases that act on
alpha-phosphate of ribonucleotides. This subgroup
includes members from all three forms of cellular life.
Although the biochemical function has not been
characterised for many of the members of this subgroup,
the proteins from Yeast have been shown to be involved
in secretion, peroxisome formation and gene expression.
Length = 103
Score = 87.7 bits (218), Expect = 8e-23
Identities = 38/102 (37%), Positives = 55/102 (53%), Gaps = 7/102 (6%)
Query: 94 LFDKIVRKEVPCDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAADEDAKILGHL 153
+F KI+ E+P ++EDD +AF DINP + H LV+PKK +L E+ L L
Sbjct: 3 IFCKIIAGEIPSYKVYEDDHVLAFLDINPASKGHTLVIPKKHYENLLDLDPEE---LAEL 59
Query: 154 MIVAKKVA----AKKLIRNYRVVVNNGWEAVQFSGHLHLHVL 191
++ AKKVA ++ NNG A Q H+H+HV+
Sbjct: 60 ILAAKKVARALKKALKADGLNILQNNGRAAGQVVFHVHVHVI 101
>gnl|CDD|238263 cd00468, HIT_like, HIT family: HIT (Histidine triad) proteins,
named for a motif related to the sequence HxHxH/Qxx (x,
a hydrophobic amino acid), are a superfamily of
nucleotide hydrolases and transferases, which act on the
alpha-phosphate of ribonucleotides. On the basis of
sequence, substrate specificity, structure, evolution
and mechanism, HIT proteins are classified in the
literacture into three major branches: the Hint branch,
which consists of adenosine 5' -monophosphoramide
hydrolases, the Fhit branch, that consists of
diadenosine polyphosphate hydrolases, and the GalT
branch consisting of specific nucloside monophosphate
transferases. Further sequence analysis reveals several
new closely related, yet uncharacterized subgroups.
Length = 86
Score = 65.2 bits (159), Expect = 3e-14
Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 7/88 (7%)
Query: 109 HEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAADEDAKILGHLMIVAKKVAAK----K 164
+D+ AF ++ P AP H LV PK+ + +L D D +L L+I A++VAA+
Sbjct: 2 PDDEHSFAFVNLKPAAPGHVLVCPKRHVETLP---DLDEALLADLVITAQRVAAELEKHG 58
Query: 165 LIRNYRVVVNNGWEAVQFSGHLHLHVLG 192
+ + V VN+G A Q H+HLHVL
Sbjct: 59 NVPSLTVFVNDGAAAGQSVPHVHLHVLP 86
>gnl|CDD|238609 cd01278, aprataxin_related, aprataxin related: Aprataxin, a HINT
family hydrolase is mutated in ataxia oculomotor apraxia
syndrome. All the members of this subgroup have the
conserved HxHxHxx (where x is a hydrophobic residue)
signature motif. Members of this subgroup are
predominantly eukaryotic in origin.
Length = 104
Score = 52.8 bits (127), Expect = 2e-09
Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 10/102 (9%)
Query: 96 DKIVRKEVPCDFLH-EDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAADEDAKILGHLM 154
D R++ + EDD V F DI P+A H+LV+PK+ I SL ED +L H+
Sbjct: 6 DIAKRRDPDPEDQVYEDDRVVVFKDIYPKARHHYLVIPKEHIASLKALTKEDVPLLEHM- 64
Query: 155 IVAKKVAAKKLIRNYRVVVNN---GWEAVQFSG--HLHLHVL 191
+ V +KL+R+ + G+ A F+ HLHLHV+
Sbjct: 65 ---ETVGREKLLRSDNTDPSEFRFGFHAPPFTSVSHLHLHVI 103
>gnl|CDD|238606 cd01275, FHIT, FHIT (fragile histidine family): FHIT proteins,
related to the HIT family carry a motif HxHxH/Qxx (x, is
a hydrophobic amino acid), On the basis of sequence,
substrate specificity, structure, evolution and
mechanism, HIT proteins are classified into three
branches: the Hint branch, which consists of adenosine
5' -monophosphoramide hydrolases, the Fhit branch, that
consists of diadenosine polyphosphate hydrolases, and
the GalT branch consisting of specific nucloside
monophosphate transferases. Fhit plays a very important
role in the development of tumours. Infact, Fhit
deletions are among the earliest and most frequent
genetic alterations in the development of tumours.
Length = 126
Score = 39.2 bits (92), Expect = 3e-04
Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 108 LHEDDLCVAFDDINPQAPEHFLVLPKKKIVSL-SLAADEDAKILGHLMIVAKKVAAKKLI 166
+ A ++ P P H LV+P + + L L +E A + + + K A K +
Sbjct: 17 FYRTKHSFAVVNLYPYNPGHVLVVPYRHVPRLEDLTPEEIADLFKLVQLAMK--ALKVVY 74
Query: 167 R--NYRVVVNNGWEAVQFSGHLHLHVL 191
+ + + +N+G H+H+H++
Sbjct: 75 KPDGFNIGINDGKAGGGIVPHVHIHIV 101
>gnl|CDD|185129 PRK15207, PRK15207, long polar fimbrial outer membrane usher
protein LpfC; Provisional.
Length = 842
Score = 34.1 bits (78), Expect = 0.041
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 114 CVAFDDINPQAPEHFLVLPKKKIVSLSLAA 143
CVAFD+I PQA HF + +S AA
Sbjct: 130 CVAFDEIIPQATSHFDFNTQTLHLSFPQAA 159
>gnl|CDD|238970 cd02012, TPP_TK, Thiamine pyrophosphate (TPP) family, Transketolase
(TK) subfamily, TPP-binding module; TK catalyzes the
transfer of a two-carbon unit from ketose phosphates to
aldose phosphates. In heterotrophic organisms, TK
provides a link between glycolysis and the pentose
phosphate pathway and provides precursors for
nucleotide, aromatic amino acid and vitamin
biosynthesis. In addition, the enzyme plays a central
role in the Calvin cycle in plants. Typically, TKs are
homodimers. They require TPP and divalent cations, such
as magnesium ions, for activity.
Length = 255
Score = 31.7 bits (73), Expect = 0.20
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 9/37 (24%)
Query: 161 AAKKLIRNYRVVV-------NNG--WEAVQFSGHLHL 188
A K L +YRV V G WEA F+GH L
Sbjct: 120 AEKLLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKL 156
>gnl|CDD|185404 PTZ00028, PTZ00028, 40S ribosomal protein S6e; Provisional.
Length = 218
Score = 29.4 bits (66), Expect = 1.1
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 47 LFDKIVRKEVPCDFLHEDDLLTWYVAQSSGGEQKQ 81
F+K + EVP D L ++ Y+ + SGG KQ
Sbjct: 27 FFEKRIGAEVPGDSLGDE--FKGYIFKISGGNDKQ 59
>gnl|CDD|234767 PRK00448, polC, DNA polymerase III PolC; Validated.
Length = 1437
Score = 28.3 bits (64), Expect = 3.4
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 143 ADEDAKILGHLMIVAKKVAAKKLIRN 168
AD DA+ +L+I K +K I N
Sbjct: 566 ADYDAEATAYLLIKFLKDLKEKGITN 591
>gnl|CDD|241465 cd13311, PH_Slm1, Slm1 Pleckstrin homology (PH) domain. Slm1 is a
component of the target of rapamycin complex 2 (TORC2)
signaling pathway. It plays a role in the regulation of
actin organization and is a target of sphingolipid
signaling during the heat shock response. Slm1 contains
a single PH domain that binds PtdIns(4,5)P2, PtdIns(4)P,
and dihydrosphingosine 1-phosphate (DHS-1P). Slm1
possesses two binding sites for anionic lipids. The
non-canonical binding site of the PH domain of Slm1 is
used for ligand binding, and it is proposed that
beta-spectrin, Tiam1 and ArhGAP9 also have this type of
phosphoinositide binding site. PH domains have diverse
functions, but in general are involved in targeting
proteins to the appropriate cellular location or in the
interaction with a binding partner. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with
high affinity and specificity. PH domains are
distinguished from other PIP-binding domains by their
specific high-affinity binding to PIPs with two vicinal
phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or
PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 110
Score = 26.6 bits (59), Expect = 5.3
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 13/69 (18%)
Query: 104 PCDFLHEDDLCVAF---DDINPQAPEHFLVLPKKKIVSLSLAADEDAKILGHLMIVAKKV 160
P +LHE F D APE L LP+ + + S + K ++ K V
Sbjct: 28 PAGYLHE------FKSSDRKKDPAPEMSLYLPECVLGAPSDEGGKSHK----FILKGKDV 77
Query: 161 AAKKLIRNY 169
+ K R +
Sbjct: 78 GSGKFHRGH 86
>gnl|CDD|233284 TIGR01133, murG, undecaprenyldiphospho-muramoylpentapeptide
beta-N-acetylglucosaminyltransferase. RM 8449890 RT The
final step of peptidoglycan subunit assembly in
Escherichia coli occurs in the cytoplasm. RA Bupp K, van
Heijenoort J. RL J Bacteriol 1993 Mar;175(6):1841-3
[Cell envelope, Biosynthesis and degradation of murein
sacculus and peptidoglycan].
Length = 348
Score = 27.2 bits (61), Expect = 6.1
Identities = 17/62 (27%), Positives = 24/62 (38%)
Query: 121 NPQAPEHFLVLPKKKIVSLSLAADEDAKILGHLMIVAKKVAAKKLIRNYRVVVNNGWEAV 180
+ P L + K L L + AKIL L+ A A+K I+ N E V
Sbjct: 165 SLPVPRERFGLREGKPTILVLGGSQGAKILNELVPKALAKLAEKGIQIVHQTGKNDLEKV 224
Query: 181 QF 182
+
Sbjct: 225 KN 226
>gnl|CDD|227341 COG5008, PilU, Tfp pilus assembly protein, ATPase PilU [Cell
motility and secretion / Intracellular trafficking and
secretion].
Length = 375
Score = 26.6 bits (59), Expect = 9.1
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 87 LKHRNNGLFDKIVRKEVPCDFLHEDDLCV 115
+ +RN I+ E P +F+H+ C+
Sbjct: 148 IGYRNKNSTGHIITIEDPIEFIHKHKRCI 176
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.137 0.422
Gapped
Lambda K H
0.267 0.0783 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,266,073
Number of extensions: 952682
Number of successful extensions: 701
Number of sequences better than 10.0: 1
Number of HSP's gapped: 688
Number of HSP's successfully gapped: 28
Length of query: 201
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 109
Effective length of database: 6,857,034
Effective search space: 747416706
Effective search space used: 747416706
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.2 bits)