RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5899
(201 letters)
>3o1c_A Histidine triad nucleotide-binding protein 1; hydrolase, HINT
protein, HIT protein, adenosine 5'- monophosphoramidase;
HET: ADN; 1.08A {Oryctolagus cuniculus} PDB: 3llj_A*
1rzy_A* 3qgz_A* 3o1z_A 3o1x_A* 4eqe_A* 4eqg_A* 4eqh_A*
3tw2_A* 1kpb_A 1kpf_A* 1kpa_A 1kpc_A 1av5_A* 1kpe_A*
4rhn_A* 3rhn_A* 5rhn_A* 6rhn_A
Length = 126
Score = 172 bits (439), Expect = 4e-56
Identities = 61/109 (55%), Positives = 77/109 (70%), Gaps = 1/109 (0%)
Query: 94 LFDKIVRKEVPCDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAADEDAKILGHL 153
+F KI+RKE+P + EDD +AF DI+PQAP HFLV+PKK I +S A D D +LGHL
Sbjct: 18 IFGKIIRKEIPAKIIFEDDQALAFHDISPQAPTHFLVIPKKHISQISAAEDADESLLGHL 77
Query: 154 MIVAKKVAAKKLIRN-YRVVVNNGWEAVQFSGHLHLHVLGGRPLHWPPG 201
MIV KK AA ++ YR+VVN G + Q H+HLHVLGGR ++WPPG
Sbjct: 78 MIVGKKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMNWPPG 126
>3oj7_A Putative histidine triad family protein; hydrolase, structural
genomics, seattle structural genomics for infectious
disease, ssgcid; 1.40A {Entamoeba histolytica} PDB:
3omf_A* 3oxk_A*
Length = 117
Score = 169 bits (431), Expect = 7e-55
Identities = 43/107 (40%), Positives = 63/107 (58%)
Query: 94 LFDKIVRKEVPCDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAADEDAKILGHL 153
+F KI +K++P ++EDD AF DINP AP H LV+PK+ I SL+ +E+ +G +
Sbjct: 10 IFCKIAQKQIPSTIVYEDDEIFAFKDINPIAPIHILVIPKQHIASLNEITEENEAFIGKV 69
Query: 154 MIVAKKVAAKKLIRNYRVVVNNGWEAVQFSGHLHLHVLGGRPLHWPP 200
+ + K+ YRVV N G +A Q H+H H+LGG+ L W
Sbjct: 70 LYKVSLIGKKECPEGYRVVNNIGEDAGQTVKHIHFHILGGKKLAWDK 116
>4egu_A Histidine triad (HIT) protein; structural genomics, center for
structural genomics of infec diseases, csgid, HIT
domain, unknown function; HET: 5GP; 0.95A {Clostridium
difficile}
Length = 119
Score = 165 bits (419), Expect = 4e-53
Identities = 43/111 (38%), Positives = 65/111 (58%), Gaps = 3/111 (2%)
Query: 94 LFDKIVRKEVPCDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAADEDAKILGHL 153
+F KI E+P ++EDD +AF+D+NP AP H LV+PKK SL D++ I+ H+
Sbjct: 7 IFCKIANGEIPSTKVYEDDRVLAFNDLNPVAPYHILVVPKKHYDSLIDIPDKEMDIVSHI 66
Query: 154 MIVAKKVAAKKLIRN--YRVVVNNGWEAVQFSGHLHLHVLGGRPL-HWPPG 201
+V K+A +K +RV+ N G + Q HLH H+L G+ L ++ G
Sbjct: 67 HVVINKIAKEKGFDQTGFRVINNCGSDGGQEVKHLHYHILAGKKLPNYEAG 117
>3n1s_A HIT-like protein HINT; histidine triad nucleotide binding protein,
GMP, hydro; HET: 5GP; 1.45A {Escherichia coli} PDB:
3n1t_A*
Length = 119
Score = 157 bits (399), Expect = 4e-50
Identities = 43/105 (40%), Positives = 69/105 (65%), Gaps = 2/105 (1%)
Query: 94 LFDKIVRKEVPCDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAADEDAKILGHL 153
+F KI+R+E+P D +++DDL AF DI+PQAP H L++P I +++ + E + LG +
Sbjct: 6 IFSKIIRREIPSDIVYQDDLVTAFRDISPQAPTHILIIPNILIPTVNDVSAEHEQALGRM 65
Query: 154 MIVAKKVAAKKLIRN--YRVVVNNGWEAVQFSGHLHLHVLGGRPL 196
+ VA K+A ++ I YR+++N Q H+H+H+LGGRPL
Sbjct: 66 ITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIHMHLLGGRPL 110
>1xqu_A HIT family hydrolase; protein STRU initiative, PSI, southeast
collaboratory for structural GEN secsg; 2.30A
{Clostridium thermocellum} SCOP: d.13.1.1
Length = 147
Score = 156 bits (396), Expect = 3e-49
Identities = 41/115 (35%), Positives = 63/115 (54%), Gaps = 2/115 (1%)
Query: 84 TQKLKHRNNGLFDKIVRKEVPCDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAA 143
+ N +F KI+++E+P +ED+ +A DINP AP H L++PK+ I ++
Sbjct: 28 AGLMYTLENCVFCKIIKRELPSTIYYEDERVIAIKDINPAAPVHVLIIPKEHIANVKEIN 87
Query: 144 DEDAKILGHLMIVAKKVAAKKLIRN--YRVVVNNGWEAVQFSGHLHLHVLGGRPL 196
+ +A+IL + A KVA I YR++ N G A Q HLH H+LGG +
Sbjct: 88 ESNAQILIDIHKAANKVAEDLGIAEKGYRLITNCGVAAGQTVFHLHYHLLGGVDM 142
>3o0m_A HIT family protein; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, hydrola structural genomics; HET: AMP;
1.90A {Mycobacterium smegmatis str}
Length = 149
Score = 145 bits (369), Expect = 3e-45
Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 5/113 (4%)
Query: 94 LFDKIVRKEVPCDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAADEDAKILGHL 153
+F IV + P ++ED+ + DI P H LV+PK V L+ E + +
Sbjct: 8 VFCAIVSGDAPAIRIYEDENFLGILDIRPFTRGHTLVIPKTHTVDLTDTPPETVAGMAAV 67
Query: 154 MIVAKKVAAKKLIRN--YRVVVNNGWEAVQFSGHLHLHVLGGR---PLHWPPG 201
+ A + + + +N+G A Q H+HLHV+ R L + G
Sbjct: 68 GQRIARAARESGLHADGNNIAINDGKAAFQTVFHIHLHVVPRRNGDKLSFAKG 120
>3ksv_A Uncharacterized protein; HIT family, structural genomics,
structural genomics of PATH protozoa consortium, SGPP,
unknown function; 1.90A {Leishmania major}
Length = 149
Score = 141 bits (358), Expect = 1e-43
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 7/114 (6%)
Query: 94 LFDKIVRKEVPCDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAADEDAKILGHL 153
+F KI++ ++PC + E +AF DINP + H LV+PK+ L EDA +G L
Sbjct: 14 IFCKIIKGDIPCAKVAETSKALAFMDINPLSRGHMLVIPKEHASCLHELGMEDAADVGVL 73
Query: 154 MIVAKKVAAKKL-IRNYRVVVNNGWEAVQFSGHLHLHVL------GGRPLHWPP 200
+ A + A Y V+ NNG A Q H+H H++ G + W
Sbjct: 74 LAKASRAVAGPDGSMQYNVLQNNGSLAHQEVPHVHFHIIPKTDEKTGLKIGWDT 127
>3p0t_A Uncharacterized protein; ssgcid, HIT-like protein, mycobacerium
paratuberculosis, STR genomics; 1.90A {Mycobacterium
avium subsp}
Length = 138
Score = 138 bits (351), Expect = 2e-42
Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 4/105 (3%)
Query: 94 LFDKIVRKEVPCDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAADEDAKILGHL 153
+F KI+ +E+P F++EDD VAF I P H LV+P+++I + D D+ +
Sbjct: 8 IFTKIINRELPGRFVYEDDDVVAFLTIEPMTQGHTLVVPREEIDNWQ---DVDSAAFNRV 64
Query: 154 MIVAKKVAAKKLIRNYRVVVNNGWEAVQFSGHLHLHVLGGRPLHW 198
M V++ + K + + +R + A HLH+HV R L
Sbjct: 65 MGVSQLI-GKAVCKAFRTERSGLIIAGLEVPHLHVHVFPTRSLSD 108
>1y23_A HIT, histidine triad protein; HIT protein, PKCI-1, cell-cycle
regulation, NYSGXRC, structural genomics, protein
structure initiative; 2.30A {Bacillus subtilis} SCOP:
d.13.1.1
Length = 145
Score = 130 bits (330), Expect = 2e-39
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 7/114 (6%)
Query: 94 LFDKIVRKEVPCDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAADEDAKILGHL 153
+F KI+ ++P ++ED+ +AF DI+ H LV+PK I ++ DE AK H
Sbjct: 8 IFCKIIAGDIPSAKVYEDEHVLAFLDISQVTKGHTLVIPKTHIENVYEFTDELAKQYFHA 67
Query: 154 MIVAKKVAAKKLIRN-YRVVVNNGWEAVQFSGHLHLHVL------GGRPLHWPP 200
+ + + + NNG +A Q H H+H++ G W
Sbjct: 68 VPKIARAIRDEFEPIGLNTLNNNGEKAGQSVFHYHMHIIPRYGKGDGFGAVWKT 121
>3lb5_A HIT-like protein involved in cell-cycle regulatio; niaid, seattle
structural genomics center for infectious DIS ssgcid,
histidine triad; 1.90A {Bartonella henselae}
Length = 161
Score = 129 bits (325), Expect = 2e-38
Identities = 38/121 (31%), Positives = 56/121 (46%), Gaps = 4/121 (3%)
Query: 84 TQKLKHRNNGLFDKIVRKEVPCDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAA 143
+ K + NN +F K++R E+P ++EDD +AF DI PQAP H LV+PKK +L A
Sbjct: 21 SMKQAYDNNNIFAKLIRNEIPSVRVYEDDDVIAFMDIMPQAPGHTLVIPKKGSRNLLDAD 80
Query: 144 DEDAKILGHLMIVAKKVAAKKLIRN-YRVVVNNGWEAVQFSGHLHLHVLGGR---PLHWP 199
E + + K K + V+ N + Q HLH H++ L
Sbjct: 81 TETLFPVIKAVQKIAKAVKKAFQADGITVMQFNEAASQQTVYHLHFHIIPRMEGIELTPH 140
Query: 200 P 200
Sbjct: 141 N 141
>3imi_A HIT family protein; structural genomics, infectious diseases for
structural genomics of infectious diseases, unknown FUN
csgid; 2.01A {Bacillus anthracis str}
Length = 147
Score = 128 bits (324), Expect = 2e-38
Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 13/120 (10%)
Query: 91 NNGLFDKIVRKEVPCDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAADEDAKIL 150
+N +F KI+ ++ C ++ED+ +AF DI+ H LV+PK + E
Sbjct: 9 DNCIFCKIIDGQILCSKVYEDEHVLAFLDISQVTKGHTLVIPKVHKQDIFALTPEI---A 65
Query: 151 GHLMIVAKKVA--AKKLIRN--YRVVVNNGWEAVQFSGHLHLHVLG------GRPLHWPP 200
H+ V K+A K + ++ NNG +A Q H HLH++ G W
Sbjct: 66 SHIFSVVPKIANAIKAEFNPVGFNLLNNNGEKAGQTVFHFHLHLIPRYGENDGFGAVWKS 125
>3l7x_A SMU.412C, putative HIT-like protein involved in cell-cycle
regulation; 1.70A {Streptococcus mutans}
Length = 173
Score = 127 bits (320), Expect = 1e-37
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 7/114 (6%)
Query: 94 LFDKIVRKEVPCDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAADED-AKILGH 152
LF KIV ++P ++ED+ +AF DI+ H LV+PK+ + + A +
Sbjct: 39 LFCKIVAGDIPSSKVYEDEDVLAFLDISQATKGHTLVIPKEHVRNALEMTQTQAANLFAR 98
Query: 153 LMIVAKKVAAKKLIRNYRVVVNNGWEAVQFSGHLHLHVL------GGRPLHWPP 200
+ +A+ + ++ NN A Q H H+H++ + +
Sbjct: 99 IPKIARALQKATKADGLNIINNNEETAGQTVFHAHVHLVPRFADSDEFDIRFVQ 152
>2eo4_A 150AA long hypothetical histidine triad nucleotid protein; HIT
family, structural genomics, NPPSFA; 1.80A {Sulfolobus
tokodaii}
Length = 149
Score = 122 bits (309), Expect = 4e-36
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 94 LFDKIVRKEVPCDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAADEDAKILGHL 153
F I+ +E+ F++ED+ A D P + H LV+PKK + A ++ L +
Sbjct: 2 TFCSIINRELEGYFVYEDEKFAAILDKYPVSLGHTLVIPKKHFENYLEADEDTLAELAKV 61
Query: 154 MIVAKKVAAKKLIRN-YRVVVNNGWEAVQFSGHLHLHVLGGRPLHWPPG 201
+ + + + R++ N G A Q HLH+H++ +P
Sbjct: 62 VKLVSLGIKDAVKADGLRLLTNIGRSAGQVIFHLHVHIIPTWEGDYPDI 110
>3r6f_A HIT family protein; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
protozoan parasite; 1.85A {Encephalitozoon cuniculi}
Length = 135
Score = 112 bits (283), Expect = 2e-32
Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 13/114 (11%)
Query: 94 LFDKIVRKEVPCDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAADEDAKILGHL 153
+F + RK + ++E D A D P + HFLV+PK L E+ L +
Sbjct: 9 IFCTLYRKG--ANIIYETDRLFALIDRYPLSKGHFLVIPKAHHPYLHNYKPEE---LSGV 63
Query: 154 MIVAKKVAAKKLIRNYRVVVNNGWEAVQFSGHLHLHVLGGR------PLHWPPG 201
+ + + K Y ++ NNG Q H+H HV+ ++W
Sbjct: 64 LDTIRHLVQKFGFERYNILQNNG--NHQEVFHVHFHVIPFVSADERLMINWKAK 115
>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding
protein, DNA deadenylas hydrolase; 1.80A
{Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*
Length = 204
Score = 98.6 bits (245), Expect = 4e-26
Identities = 18/118 (15%), Positives = 40/118 (33%), Gaps = 16/118 (13%)
Query: 92 NGLFDKIVRKEVPCDFLHEDDLCVAFDDINPQAPEHFLVLPKKK---IVSLSLAADEDAK 148
+ L I E + ++ DD V D+ P++ H L++ + V +
Sbjct: 8 DNLKVYIESPESYKNVIYYDDDVVLVRDMFPKSKMHLLLMTRDPHLTHVHPLEIMMKHRS 67
Query: 149 ILGHLMIVAKKVAAKKLI-------------RNYRVVVNNGWEAVQFSGHLHLHVLGG 193
++ L+ + + + + G+ A +LHLH++
Sbjct: 68 LVEKLVSYVQGDLSGLIFDEARNCLSQQLTNEALCNYIKVGFHAGPSMNNLHLHIMTL 125
>1fit_A FragIle histidine protein; FHIT, fragIle histidine triad protein,
putative human tumor suppressor, advanced photon source,
APS; HET: FRU; 1.85A {Homo sapiens} SCOP: d.13.1.1 PDB:
1fhi_A* 2fit_A* 3fit_A* 4fit_A 5fit_A* 6fit_A* 2fhi_A*
Length = 147
Score = 56.6 bits (137), Expect = 1e-10
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 11/94 (11%)
Query: 104 PCDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLS-LAADEDAKILGHLMIVAKKVAA 162
P + +L A + P P H LV P + + L DE + L ++V
Sbjct: 12 PSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDE----VADLFQTTQRV-G 66
Query: 163 KKLIRNYR-----VVVNNGWEAVQFSGHLHLHVL 191
+ +++ + +G EA Q H+H+HVL
Sbjct: 67 TVVEKHFHGTSLTFSMQDGPEAGQTVKHVHVHVL 100
>3ano_A AP-4-A phosphorylase; diadenosine polyphosphate, HIT transferase;
HET: PG4; 1.89A {Mycobacterium tuberculosis}
Length = 218
Score = 53.4 bits (128), Expect = 4e-09
Identities = 22/101 (21%), Positives = 42/101 (41%), Gaps = 3/101 (2%)
Query: 94 LFDKIVRKEVPCDF-LHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLS-LAADEDAKILG 151
F +I + + L A ++ P P H +V+P +++ L L E A+++
Sbjct: 72 PFTEIPQLSDEEGLVVARGKLVYAVLNLYPYNPGHLMVVPYRRVSELEDLTDLESAELMA 131
Query: 152 HLMIVAKKVAAKKLIRNYRVVVNNGWEAVQ-FSGHLHLHVL 191
+ + + V +N G A + HLH+HV+
Sbjct: 132 FTQKAIRVIKNVSRPHGFNVGLNLGTSAGGSLAEHLHVHVV 172
>2oik_A Histidine triad (HIT) protein; HIT-like fold, structural genomics,
joint center for structu genomics, JCSG; HET: MSE; 1.65A
{Methylobacillus flagellatus} SCOP: d.13.1.1
Length = 154
Score = 48.2 bits (115), Expect = 1e-07
Identities = 16/98 (16%), Positives = 29/98 (29%), Gaps = 12/98 (12%)
Query: 101 KEVPCDF--------LHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAADEDAKILGH 152
C+ L +D LC N P V+ + + +S + L
Sbjct: 8 FHKNCELCTTAGGEILWQDALCRVVHVENQDYPGFCRVILNRHVKEMSDLRPAERDHLML 67
Query: 153 LMIVAKKVAAKKLIRNYRVVVNNGWEAVQFSGHLHLHV 190
++ + + R N + H+H HV
Sbjct: 68 VV----FAVEEAVREVMRPDKINLASLGNMTPHVHWHV 101
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 1e-05
Identities = 32/202 (15%), Positives = 61/202 (30%), Gaps = 81/202 (40%)
Query: 18 IQLTWYVAQSSG--GEQ-KQSFTQKLKHRNNGLFDKIVRKEVPCDFLHEDD-------LL 67
++ V +S Q ++ F + L P + DD L+
Sbjct: 16 LEHVLLVPTASFFIASQLQEQFNKIL--------------PEPTEGFAADDEPTTPAELV 61
Query: 68 TWYVAQSSGGEQKQSVTQKLKHRNNGLFDKIVR---KEVPCDFLHEDDLCVAFDDINPQA 124
++ V+ ++ G FD+++ E +L +D+
Sbjct: 62 GKFL---------GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI----------- 101
Query: 125 PEHFLVLPKKKIVSLSLAADEDAKILGHLMIVAKKVAAKKLIRNY---RVVVNNG----- 176
H L L + D ++ K+LI+NY R++
Sbjct: 102 --HALAA--------KLLQENDTTLV----------KTKELIKNYITARIMAKRPFDKKS 141
Query: 177 ----WEAVQFSGHLHLHVL-GG 193
+ AV G+ L + GG
Sbjct: 142 NSALFRAVG-EGNAQLVAIFGG 162
Score = 30.4 bits (68), Expect = 0.50
Identities = 36/158 (22%), Positives = 51/158 (32%), Gaps = 62/158 (39%)
Query: 47 LFDKIVRKEVPCDFLHEDDLL--TWYVAQSSGGEQKQSVTQKLKHRNNGLFDKIVRKEVP 104
+F +I F E LL T + TQ P
Sbjct: 1706 IFKEINEHSTSYTFRSEKGLLSATQF-------------TQ------------------P 1734
Query: 105 CDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIV---SL----SLAAD------EDA-KIL 150
L E AF+D+ L+ P SL +LA+ E +++
Sbjct: 1735 ALTLME---KAAFEDLK----SKGLI-PADATFAGHSLGEYAALASLADVMSIESLVEVV 1786
Query: 151 ---GHLMIVAKKVAAKKLIR-NYRVV-VNNGWEAVQFS 183
G M VA V +L R NY ++ +N G A FS
Sbjct: 1787 FYRGMTMQVA--VPRDELGRSNYGMIAINPGRVAASFS 1822
Score = 29.6 bits (66), Expect = 0.87
Identities = 37/206 (17%), Positives = 58/206 (28%), Gaps = 90/206 (43%)
Query: 8 AGN-SALVALVIQLTWYVAQSSGGEQ-KQSFTQ-KLK--HRNNGLFDKIVRKEVPCDFLH 62
+G +L L + L A SG +Q + F++ KLK +R F + P F H
Sbjct: 380 SGPPQSLYGLNLTLRKAKA-PSGLDQSRIPFSERKLKFSNR----FLPV---ASP--F-H 428
Query: 63 EDDLLTWYVAQSSGGEQKQSVT---QKLK----HRNNGLFDKIVRKEVPCDFLHEDDLCV 115
LL + K +V+ + ++ +G DL V
Sbjct: 429 SH-LLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDG-----------------SDLRV 470
Query: 116 AFDDINPQAPEHFLVLPKKKIVSLSLAADEDAKILGHLMIVAKKVAAKKLIRNYRVVVNN 175
I+ +IV I+ R+ V
Sbjct: 471 LSGSISE------------RIVD---------------CII-------------RLPVK- 489
Query: 176 GWEAVQFSGHLHLHVLGGRPLHWPPG 201
WE H+ G PG
Sbjct: 490 -WETTTQFKATHILDFG-------PG 507
Score = 27.7 bits (61), Expect = 3.1
Identities = 11/76 (14%), Positives = 23/76 (30%), Gaps = 11/76 (14%)
Query: 11 SALVALVIQLTWYVAQSSGGEQKQSFTQKLKHRNNGLFDKIVRKEVPCDFLHEDDLLTWY 70
+ LV + YV+ + F Q L + +L +D+
Sbjct: 55 TTPAELVGKFLGYVSSLVEPSKVGQFDQVLNL----CLTEFEN-----CYLEGNDIHA-- 103
Query: 71 VAQSSGGEQKQSVTQK 86
+A E ++ +
Sbjct: 104 LAAKLLQENDTTLVKT 119
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM,
nitrilase, nucleotide-binding protein, cancer; 2.80A
{Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1
Length = 440
Score = 42.8 bits (101), Expect = 3e-05
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 9/92 (9%)
Query: 109 HEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAADEDAKILGHLMIVAKKVAAKKLIRN 168
+ F ++ P H LV PK+ + L+ D + L IVAKKV L ++
Sbjct: 313 YSTPHSFVFVNLKPVTDGHVLVSPKRVVPRLTDLTDAE---TADLFIVAKKV-QAMLEKH 368
Query: 169 YR-----VVVNNGWEAVQFSGHLHLHVLGGRP 195
+ + V +G +A Q H+H+H+L R
Sbjct: 369 HNVTSTTICVQDGKDAGQTVPHVHIHILPRRA 400
>3ohe_A Histidine triad (HIT) protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-biology; HET: MSE; 1.20A {Marinobacter aquaeolei}
Length = 137
Score = 40.8 bits (95), Expect = 4e-05
Identities = 16/86 (18%), Positives = 23/86 (26%), Gaps = 4/86 (4%)
Query: 105 CDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAADEDAKILGHLMIVAKKVAAKK 164
L E LC + P LV I + +E + A +
Sbjct: 13 THKLGESRLCDVLLMNDNTWPWVILVPRVSGIREIYELPNEQ-QQRLLFESSALSEGMME 71
Query: 165 LIRNYRVVVNNGWEAVQFSGHLHLHV 190
L ++ N LHLH
Sbjct: 72 LFGGDKM---NVAALGNMVPQLHLHH 94
>3i4s_A Histidine triad protein; hydrolase, phosphatase, HIT superfamily,
PSI-2, NYSGXRC, STR genomics, protein structure
initiative; 1.75A {Bradyrhizobium japonicum}
Length = 149
Score = 38.1 bits (88), Expect = 6e-04
Identities = 11/86 (12%), Positives = 23/86 (26%), Gaps = 4/86 (4%)
Query: 105 CDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAADEDAKILGHLMIVAKKVAAKK 164
+ + L + P LV + V + + L + ++
Sbjct: 18 TIDIGDLPLSKVLVIKDANYPWLLLVPRRPDAVEIIDLDEVQQAQLMTEI----SRVSRA 73
Query: 165 LIRNYRVVVNNGWEAVQFSGHLHLHV 190
L + N LH+H+
Sbjct: 74 LKEITKCDKLNIAALGNLVPQLHVHI 99
>3nrd_A Histidine triad (HIT) protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE; 2.06A {Sinorhizobium meliloti}
Length = 135
Score = 36.9 bits (85), Expect = 0.001
Identities = 16/86 (18%), Positives = 23/86 (26%), Gaps = 4/86 (4%)
Query: 105 CDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAADEDAKILGHLMIVAKKVAAKK 164
+ LC + + P LV + I + D L V A
Sbjct: 15 GIPIGTLGLCQMRLMNDRRWPWLILVPQRADIKEVFELTPLDQ---AMLTFETNLV-AAG 70
Query: 165 LIRNYRVVVNNGWEAVQFSGHLHLHV 190
L + N LH+HV
Sbjct: 71 LKKATGAEKINIGALGNIVRQLHVHV 96
>3i24_A HIT family hydrolase; structural genomics, PSI-2, protein structure
initiative, northeast structural genomics consortium,
NESG; 1.50A {Vibrio fischeri ES114}
Length = 149
Score = 37.0 bits (85), Expect = 0.001
Identities = 15/86 (17%), Positives = 24/86 (27%), Gaps = 4/86 (4%)
Query: 105 CDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAADEDAKILGHLMIVAKKVAAKK 164
C L LC P LV +++ + DE +I A +
Sbjct: 13 CIVLGNLPLCKVLLIKEDIGPWLILVPRIEELKEIHHMTDEQ-QIQFIKESSAVAQLLED 71
Query: 165 LIRNYRVVVNNGWEAVQFSGHLHLHV 190
++ N LH+H
Sbjct: 72 NFSPDKI---NIGALGNLVPQLHIHH 94
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.4 bits (70), Expect = 0.19
Identities = 31/215 (14%), Positives = 66/215 (30%), Gaps = 55/215 (25%)
Query: 8 AGNSALVALVIQLTWYVAQSSGGEQKQSFTQKLKHR-NNGLF-DKIVRKEVPCDFLHEDD 65
+G + + V + K++ + + +F + P L +
Sbjct: 161 SGKTWVALDVCL-----------------SYKVQCKMDFKIFWLNLKNCNSPETVL--EM 201
Query: 66 LLTWYVAQSSGGEQKQSVTQKLKHRNNGLFDKIVRKEVPCDFL----HEDDLCVAFDDI- 120
L + + +K R + + ++ R L +E+ L V ++
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR------LLKSKPYENCLLV-LLNVQ 254
Query: 121 NPQAPEHF------LVLPKKKIVSLSLAADEDAKI-LGHLMIVAKKVAAKKLIRNYRVVV 173
N +A F L+ + K V+ L+A I L H + K L+ Y +
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY---L 311
Query: 174 NNGW-----EAVQFSGH-LHLHVLGGR----PLHW 198
+ E + + L ++ W
Sbjct: 312 DCRPQDLPREVLT--TNPRRLSIIAESIRDGLATW 344
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 2.2
Identities = 9/19 (47%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
Query: 134 KKI-VSLSLAADEDAKILG 151
KK+ SL L AD+ A L
Sbjct: 23 KKLQASLKLYADDSAPALA 41
>2h85_A Putative ORF1AB polyprotein; endoribonuclease, RNA, NSP, viral
protein; 2.60A {Sars coronavirus} SCOP: c.66.1.48
d.294.1.2 PDB: 2ozk_A 2rhb_A
Length = 347
Score = 27.8 bits (61), Expect = 2.9
Identities = 7/74 (9%), Positives = 18/74 (24%), Gaps = 1/74 (1%)
Query: 111 DDLCVAFDDINPQAPEHFLVLPKKKIVSLS-LAADEDAKILGHLMIVAKKVAAKKLIRNY 169
L V FD + F +++ + +K + + + + +
Sbjct: 119 SSLTVLFDGRVEGQVDLFRNARNGVLITEGSVKGLTPSKGPAQASVNGVTLIGESVKTQF 178
Query: 170 RVVVNNGWEAVQFS 183
Q
Sbjct: 179 NYFKKVDGIIQQLP 192
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.422
Gapped
Lambda K H
0.267 0.0824 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,138,215
Number of extensions: 180254
Number of successful extensions: 406
Number of sequences better than 10.0: 1
Number of HSP's gapped: 370
Number of HSP's successfully gapped: 50
Length of query: 201
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 112
Effective length of database: 4,216,824
Effective search space: 472284288
Effective search space used: 472284288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (24.8 bits)