RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5899
(201 letters)
>d1kpfa_ d.13.1.1 (A:) Protein kinase C inhibitor-1, PKCI-1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 111
Score = 115 bits (290), Expect = 3e-34
Identities = 63/111 (56%), Positives = 80/111 (72%), Gaps = 1/111 (0%)
Query: 92 NGLFDKIVRKEVPCDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAADEDAKILG 151
+ +F KI+RKE+P + EDD C+AF DI+PQAP HFLV+PKK I +S+A D+D +LG
Sbjct: 1 DTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESLLG 60
Query: 152 HLMIVAKKVAAKKLIRN-YRVVVNNGWEAVQFSGHLHLHVLGGRPLHWPPG 201
HLMIV KK AA + YR+VVN G + Q H+HLHVLGGR +HWPPG
Sbjct: 61 HLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMHWPPG 111
>d1xqua_ d.13.1.1 (A:) Putative hydrolase {Clostridium thermocellum
[TaxId: 1515]}
Length = 113
Score = 86.8 bits (214), Expect = 5e-23
Identities = 41/107 (38%), Positives = 62/107 (57%), Gaps = 2/107 (1%)
Query: 92 NGLFDKIVRKEVPCDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAADEDAKILG 151
N +F KI+++E+P +ED+ +A DINP AP H L++PK+ I ++ + +A+IL
Sbjct: 3 NCVFCKIIKRELPSTIYYEDERVIAIKDINPAAPVHVLIIPKEHIANVKEINESNAQILI 62
Query: 152 HLMIVAKKVAAKKLIRN--YRVVVNNGWEAVQFSGHLHLHVLGGRPL 196
+ A KVA I YR++ N G A Q HLH H+LGG +
Sbjct: 63 DIHKAANKVAEDLGIAEKGYRLITNCGVAAGQTVFHLHYHLLGGVDM 109
>d1y23a_ d.13.1.1 (A:) Hit {Bacillus subtilis [TaxId: 1423]}
Length = 139
Score = 76.1 bits (186), Expect = 1e-18
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 92 NGLFDKIVRKEVPCDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAADEDAKILG 151
N +F KI+ ++P ++ED+ +AF DI+ H LV+PK I ++ DE AK
Sbjct: 2 NCIFCKIIAGDIPSAKVYEDEHVLAFLDISQVTKGHTLVIPKTHIENVYEFTDELAKQYF 61
Query: 152 HLMIVAKKVAAKKLIRN-YRVVVNNGWEAVQFSGHLHLHVL------GGRPLHWPPG 201
H + + + + NNG +A Q H H+H++ G W
Sbjct: 62 HAVPKIARAIRDEFEPIGLNTLNNNGEKAGQSVFHYHMHIIPRYGKGDGFGAVWKTH 118
>d1emsa1 d.13.1.1 (A:281-440) NIT-FHIT fusion protein, C-terminal
domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Length = 160
Score = 70.6 bits (172), Expect = 3e-16
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 2/102 (1%)
Query: 95 FDKIVRKEVPCDF-LHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLS-LAADEDAKILGH 152
K R +P D + F ++ P H LV PK+ + L+ L E A +
Sbjct: 18 GLKFARFNIPADHIFYSTPHSFVFVNLKPVTDGHVLVSPKRVVPRLTDLTDAETADLFIV 77
Query: 153 LMIVAKKVAAKKLIRNYRVVVNNGWEAVQFSGHLHLHVLGGR 194
V + + + + V +G +A Q H+H+H+L R
Sbjct: 78 AKKVQAMLEKHHNVTSTTICVQDGKDAGQTVPHVHIHILPRR 119
>d1fita_ d.13.1.1 (A:) FHIT (fragile histidine triad protein) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 146
Score = 65.6 bits (159), Expect = 2e-14
Identities = 23/98 (23%), Positives = 37/98 (37%), Gaps = 3/98 (3%)
Query: 95 FDKIVRKEVPCDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAADEDAKILGHLM 154
F + + K P + +L A + P P H LV P + + ++ L
Sbjct: 4 FGQHLIK--PSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTT 61
Query: 155 IVAKKVAAKKLI-RNYRVVVNNGWEAVQFSGHLHLHVL 191
V K + + +G EA Q H+H+HVL
Sbjct: 62 QRVGTVVEKHFHGTSLTFSMQDGPEAGQTVKHVHVHVL 99
>d1guqa2 d.13.1.2 (A:178-348) Galactose-1-phosphate
uridylyltransferase {Escherichia coli [TaxId: 562]}
Length = 171
Score = 63.9 bits (155), Expect = 1e-13
Identities = 17/118 (14%), Positives = 37/118 (31%), Gaps = 6/118 (5%)
Query: 79 QKQSVTQKLKHRNNG--LFDKIVRKEVPCD--FLHEDDLCVAFDDINPQAPEHFLVLPKK 134
+++ QK + V++E+ + E + +A P L+LPK
Sbjct: 3 EREDRLQKEYFAEQKSPMLVDYVQRELADGSRTVVETEHWLAVVPYWAAWPFETLLLPKA 62
Query: 135 KIVSLSLAADEDAKILGHLMIVAKKVAAKKLIR--NYRVVVNNGWEAVQFSGHLHLHV 190
++ ++ D L + Y + + + + H LH
Sbjct: 63 HVLRITDLTDAQRSDLALALKKLTSRYDNLFQCSFPYSMGWHGAPFNGEENQHWQLHA 120
>d2oika1 d.13.1.1 (A:6-144) Histidine triad protein Mfla2506
{Methylobacillus flagellatus [TaxId: 405]}
Length = 139
Score = 49.9 bits (118), Expect = 1e-08
Identities = 16/101 (15%), Positives = 32/101 (31%), Gaps = 6/101 (5%)
Query: 101 KEVPCDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAADEDAKILGHLMIVAKKV 160
+ L +D LC N P V+ + + +S + +++
Sbjct: 10 TTAGGEILWQDALCRVVHVENQDYPGFCRVILNRHVKEMSDLRPAER----DHLMLVVFA 65
Query: 161 AAKKLIRNYRVVVNNGWEAVQFSGHLHLHVLGGRP--LHWP 199
+ + R N + H+H HV+ H+P
Sbjct: 66 VEEAVREVMRPDKINLASLGNMTPHVHWHVIPRFKRDRHFP 106
>d1vlra1 d.13.1.3 (A:146-337) mRNA decapping enzyme DcpS C-terminal
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 192
Score = 47.1 bits (112), Expect = 2e-07
Identities = 16/110 (14%), Positives = 40/110 (36%), Gaps = 16/110 (14%)
Query: 94 LFDKIVRKEVPCDFLHEDDLC----VAFDDIN----PQAPEHFLVLPKKK-IVSLSLAAD 144
+++ + +K + E+ V D+ + + + ++ I SL
Sbjct: 30 VYNILDKKAEADRIVFENPDPSDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTP 89
Query: 145 EDAKILGHLMIVAKKVAAKKL---IRNYRVVVNNGWEAVQFSGHLHLHVL 191
E +L +++ ++ K+ RV ++ + HLH+H
Sbjct: 90 EHLPLLRNILREGQEAILKRYQVTGDRLRVYLH----YLPSYYHLHVHFT 135
>d1z84a2 d.13.1.2 (A:196-351) Galactose-1-phosphate
uridylyltransferase {Thale cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 156
Score = 44.3 bits (104), Expect = 1e-06
Identities = 21/130 (16%), Positives = 38/130 (29%), Gaps = 11/130 (8%)
Query: 78 EQKQSVTQKLKHRNNG-LFDKIVRKEVPCDFLHEDDLCVAFDDINPQAPEHFLVLPKKKI 136
+ T+ + K + E V+ P ++PK
Sbjct: 5 SSRLDGTKDYFEETGKCCLCEAKSKHF---VIDESSHFVSVAPFAATYPFEIWIIPKDHS 61
Query: 137 VSLSLAADEDAKILGHLMIVAKKVAAKKLIR-NYRVVVN----NGWEAVQFSGHLHLHVL 191
D A LG L+ + + AK+L Y +++ E+ H L ++
Sbjct: 62 SHFHHLDDVKAVDLGGLLKLMLQKIAKQLNDPPYNYMIHTSPLKVTESQLPYTHWFLQIV 121
Query: 192 GGRPLHWPPG 201
L G
Sbjct: 122 --PQLSGVGG 129
>d1tlta2 d.81.1.5 (A:128-267) Virulence factor MviM {Escherichia
coli [TaxId: 562]}
Length = 140
Score = 26.0 bits (57), Expect = 2.3
Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 5/54 (9%)
Query: 41 KHRNNGLFDKIVRKEVPCDFLHEDDLLTWYVAQSSGGEQKQSVTQKLKHRNNGL 94
KHR+N + + + D+LH D W G + L + G
Sbjct: 21 KHRSNSVGPHDLYFTLLDDYLHVVDTALWL-----SGGKASLDGGTLLTNDAGE 69
>d1kz7a2 b.55.1.1 (A:819-965) Dbl's big sister, Dbs {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 147
Score = 25.4 bits (55), Expect = 3.9
Identities = 8/41 (19%), Positives = 14/41 (34%)
Query: 59 DFLHEDDLLTWYVAQSSGGEQKQSVTQKLKHRNNGLFDKIV 99
L + W + + K+ K R+ L +K V
Sbjct: 12 KLLMQGSFSVWTDHKKGHTKVKELARFKPMQRHLFLHEKAV 52
>d2v94a1 d.12.1.3 (A:1-93) Ribosomal protein S24e {Pyrococcus abyssi
[TaxId: 29292]}
Length = 93
Score = 23.4 bits (51), Expect = 9.8
Identities = 15/102 (14%), Positives = 32/102 (31%), Gaps = 29/102 (28%)
Query: 87 LKHRNNGLFDKIVRKEVPCDFLHEDDLCVAFDDINPQAPEHFLVLPKKKIVSLSLAADED 146
+ + N L RKE+ + H + + D+ K K+V++ L + +
Sbjct: 6 TEVKENKLIG---RKEIYFEIYHPGEPTPSRKDV------------KGKLVAM-LDLNPE 49
Query: 147 -------------AKILGHLMIVAKKVAAKKLIRNYRVVVNN 175
K G+ K + Y ++ +
Sbjct: 50 TTVIQYIRSYFGSYKSKGYAKYYYDKDRMLYIEPEYILIRDG 91
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.422
Gapped
Lambda K H
0.267 0.0720 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 764,048
Number of extensions: 33880
Number of successful extensions: 100
Number of sequences better than 10.0: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 15
Length of query: 201
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 120
Effective length of database: 1,295,466
Effective search space: 155455920
Effective search space used: 155455920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.4 bits)