BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy590
         (257 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3POY|A Chain A, Crystal Structure Of The Alpha-Neurexin-1 Ectodomain, Lns
           2-6
          Length = 1019

 Score = 34.7 bits (78), Expect = 0.049,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 9/47 (19%)

Query: 158 PDKLCD------RLNRICINP---CQEDSCGEHAICIPKNHGIDCQC 195
           PD + D      ++ R C  P   CQEDSC    +C+ +  G  C C
Sbjct: 780 PDLISDALFCNGQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDC 826


>pdb|3QCW|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No Splice
            Inserts
 pdb|3QCW|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No Splice
            Inserts
          Length = 1245

 Score = 34.3 bits (77), Expect = 0.067,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 9/47 (19%)

Query: 158  PDKLCD------RLNRICINP---CQEDSCGEHAICIPKNHGIDCQC 195
            PD + D      ++ R C  P   CQEDSC    +C+ +  G  C C
Sbjct: 996  PDLISDALFCNGQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDC 1042


>pdb|3R05|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
            Splice Insert Ss3
 pdb|3R05|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
            Splice Insert Ss3
          Length = 1254

 Score = 34.3 bits (77), Expect = 0.076,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 9/47 (19%)

Query: 158  PDKLCD------RLNRICINP---CQEDSCGEHAICIPKNHGIDCQC 195
            PD + D      ++ R C  P   CQEDSC    +C+ +  G  C C
Sbjct: 1005 PDLISDALFCNGQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDC 1051


>pdb|2RKV|A Chain A, Crystal Sructure Of F. Graminearum Tri101 Complexed With
           Coenzyme A And T-2 Mycotoxin
 pdb|3B2S|A Chain A, Crystal Sructure Of F. Graminearum Tri101 Complexed With
           Coenzyme A And Deoxynivalenol
 pdb|3B30|A Chain A, Crystal Sructure Of F. Graminearum Tri101 Complexed With
           Ethyl Coenzyme A
          Length = 451

 Score = 28.9 bits (63), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 14/55 (25%), Positives = 23/55 (41%)

Query: 47  CAPSAKCHVVKHRPVCTCPQGYEGNPATKCYLPNPLGCVSNEECASTEACINSQC 101
            AP+  C  V  RP       Y G      Y  + +G ++NE   +T + + S+ 
Sbjct: 284 SAPTEFCRAVDARPAMGVSNNYPGLLQNMTYHNSTIGEIANESLGATASRLRSEL 338


>pdb|2RKT|A Chain A, Crystal Sructure Of Apo F. Graminearum Tri101
          Length = 452

 Score = 28.5 bits (62), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 14/55 (25%), Positives = 23/55 (41%)

Query: 47  CAPSAKCHVVKHRPVCTCPQGYEGNPATKCYLPNPLGCVSNEECASTEACINSQC 101
            AP+  C  V  RP       Y G      Y  + +G ++NE   +T + + S+ 
Sbjct: 285 SAPTEFCRAVDARPAXGVSNNYPGLLQNXTYHNSTIGEIANESLGATASRLRSEL 339


>pdb|3ASI|A Chain A, Alpha-Neurexin-1 Ectodomain Fragment; Lns5-Egf3-Lns6
          Length = 410

 Score = 27.7 bits (60), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 16/69 (23%)

Query: 136 GFVGCLPVRNYQPICQYNEDCPPDKLCD------RLNRICINP---CQEDSCGEHAICIP 186
           GF GCL   +            PD + D      ++ R C  P   CQEDSC    +C+ 
Sbjct: 149 GFQGCLASVDLNGRL-------PDLISDALFCNGQIERGCEGPSTTCQEDSCSNQGVCLQ 201

Query: 187 KNHGIDCQC 195
           +  G  C C
Sbjct: 202 QWDGFSCDC 210


>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The
           Ldl Receptor
          Length = 791

 Score = 27.3 bits (59), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 170 INPCQE-DSCGEHAICIPKNHGIDCQCQSGHQGNPYIACLSELICLCHLY 218
           I+ CQ+ D+C +  +C+    G  CQC+ G Q +P+      +  + +L+
Sbjct: 352 IDECQDPDTCSQ--LCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLF 399


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.137    0.480 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,421,617
Number of Sequences: 62578
Number of extensions: 371947
Number of successful extensions: 743
Number of sequences better than 100.0: 75
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 609
Number of HSP's gapped (non-prelim): 160
length of query: 257
length of database: 14,973,337
effective HSP length: 97
effective length of query: 160
effective length of database: 8,903,271
effective search space: 1424523360
effective search space used: 1424523360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)