RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy590
(257 letters)
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 37.3 bits (86), Expect = 0.004
Identities = 21/112 (18%), Positives = 31/112 (27%), Gaps = 4/112 (3%)
Query: 135 NGFVGCLP-VR-NYQPICQYNEDCPPDKLCDRLNRICINPCQEDSCGEHAICIPKNHGID 192
GF GCL V N + ++ + +R CQEDSC +C+ + G
Sbjct: 148 EGFQGCLASVDLNGRLPDLISDALFCNGQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFS 207
Query: 193 CQCQSGHQGNPYIACLSELICLCHLYTEEPWHRLPMPERASGQPVHCVLVRI 244
C C P C P + +
Sbjct: 208 CDCSMTSFSGPL--CNDPGTTYIFSKGGGQITYKWPPNDRPSTRADRLAIGF 257
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 36.5 bits (84), Expect = 0.008
Identities = 35/151 (23%), Positives = 52/151 (34%), Gaps = 42/151 (27%)
Query: 64 CPQGYEGNPATKCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHA 123
CP G+ GN C +ECA C + C+N
Sbjct: 30 CPVGFLGNGTH---------CEDLDECALV----PDICF-------STSKVPRCVNTQPG 69
Query: 124 TDC-SCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRICINPCQEDS--CGE 180
C C ++GN VG ++C+ NPC++ + C +
Sbjct: 70 FHCLPCPPRYRGNQPVG----------VGLEAAKTEKQVCE-----PENPCKDKTHNCHK 114
Query: 181 HAICIPKNHGID----CQCQSGHQGNPYIAC 207
HA CI H D C+CQ+G+ G+ I
Sbjct: 115 HAECIYLGHFSDPMYKCECQTGYAGDGLICG 145
Score = 29.6 bits (66), Expect = 1.1
Identities = 31/167 (18%), Positives = 44/167 (26%), Gaps = 12/167 (7%)
Query: 21 QSDLDCLDAEACYSGQCEDL--CAIAS-LCAPSAKCHVVKH----RPVCTCPQGYEGNPA 73
Q L+A CE C + C A+C + H C C GY G+
Sbjct: 83 QPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAGDGL 142
Query: 74 TKCYLPNPLGCV-SNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHATDCSCLEGF 132
+ G N CA+ + P +S + D +G
Sbjct: 143 ICGEDSDLDGWPNLNLVCATNATYHCIKDNCPHLPNSGQEDFDKDGIGDACDDDDDNDGV 202
Query: 133 QGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRICINPCQEDSCG 179
L Q +E C NP Q D+
Sbjct: 203 TDEKDNCQLLFNPRQADYDKDEVGDRCDNCPY----VHNPAQIDTDN 245
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 36.0 bits (82), Expect = 0.009
Identities = 16/117 (13%), Positives = 31/117 (26%), Gaps = 4/117 (3%)
Query: 47 CAPSAKCHVVKHRPVCTCPQGYEGNPATKCYLPNPLGCVSNEECASTEACINSQCQKPCA 106
S C+ +K C CP G++ +C + C + C+ C+N + C
Sbjct: 8 GGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDE--CQDPDTCSQL--CVNLEGGYKCQ 63
Query: 107 VHSPCAPNAVCINKNHATDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCD 163
+ + L + R+ N +
Sbjct: 64 CEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTE 120
Score = 33.7 bits (76), Expect = 0.046
Identities = 11/43 (25%), Positives = 16/43 (37%)
Query: 171 NPCQEDSCGEHAICIPKNHGIDCQCQSGHQGNPYIACLSELIC 213
N C +++ G +C G +C C G Q C C
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDEC 43
Score = 27.1 bits (59), Expect = 6.2
Identities = 15/109 (13%), Positives = 31/109 (28%), Gaps = 6/109 (5%)
Query: 104 PCAVHSPCAPNAVCINKNHATDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDK--- 160
C + + VC + +C C +GFQ C + Q ++ C +
Sbjct: 2 ECLD-NNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGY 60
Query: 161 --LCDRLNRICINPCQEDSCGEHAICIPKNHGIDCQCQSGHQGNPYIAC 207
C+ ++ + + G A N + +
Sbjct: 61 KCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIP 109
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 34.4 bits (78), Expect = 0.041
Identities = 10/84 (11%), Positives = 17/84 (20%), Gaps = 9/84 (10%)
Query: 135 NGFVGCL--------PVRNYQPICQYNEDCPPDKLCDRLNRICINPCQEDSCGEHAICIP 186
F G + +D PP+ + C +C
Sbjct: 148 EPFKGWIRDVRVQSSLALPVDSGEVKLDDEPPNSGGGS-PCEAGEEGEGGVCLNGGVCSV 206
Query: 187 KNHGIDCQCQSGHQGNPYIACLSE 210
+ C C + E
Sbjct: 207 VDDQAVCDCSRTGFRGKDCSQGKE 230
Score = 33.3 bits (75), Expect = 0.083
Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 8/77 (10%)
Query: 134 GNGFVGCLPVRN------YQPICQYNEDCPPDKLCDRLNRICINPCQEDSCGEHAICIPK 187
G+VGC +R+ + I Q E + +R PC + C + +C
Sbjct: 579 NYGYVGC--IRDLFIDGQSKDIRQMAEVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDG 636
Query: 188 NHGIDCQCQSGHQGNPY 204
+ C C
Sbjct: 637 WNRYVCDCSGTGYLGRS 653
Score = 30.6 bits (68), Expect = 0.61
Identities = 12/61 (19%), Positives = 17/61 (27%), Gaps = 1/61 (1%)
Query: 75 KCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHATDCSCLE-GFQ 133
LP G V ++ + C VC + C C GF+
Sbjct: 162 SLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFR 221
Query: 134 G 134
G
Sbjct: 222 G 222
Score = 30.6 bits (68), Expect = 0.64
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 171 NPCQEDSCGEHAICIPKNHGIDCQCQSGHQGNPY 204
CQEDSC +C+ + G C C P
Sbjct: 1018 TTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPL 1051
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 31.7 bits (72), Expect = 0.10
Identities = 27/183 (14%), Positives = 44/183 (24%), Gaps = 49/183 (26%)
Query: 37 CEDLCAIASLCAPSAKCHVVKHRPVCTCPQGYEGNPATKCYLPNPLGCVSNEECASTEAC 96
C C S C + C C G+ C ECA+
Sbjct: 5 CARWCPQDSSCVNA---------TACRCNPGFSSFSEIIT--TPMETCDDINECATLSKV 53
Query: 97 INSQCQKPCAVHSPCAPNAVCINKNHATDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDC 156
C + C N + DC C G++ +
Sbjct: 54 -------------SCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNES----------- 89
Query: 157 PPDKLCDRLNRIC--INPCQEDS--CGEHAICIPKNHGIDCQCQSGHQGNPYIACLSELI 212
C ++ C C +C C+C+ G + I ++
Sbjct: 90 ---------ENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGI-PNNQKD 139
Query: 213 CLC 215
+C
Sbjct: 140 TVC 142
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 32.4 bits (73), Expect = 0.10
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 7/38 (18%)
Query: 172 PCQEDSCG-------EHAICIPKNHGIDCQCQSGHQGN 202
P + +C HA C G C+C + + GN
Sbjct: 2 PLAQQTCANNRHQCSVHAECRDYATGFCCRCVANYTGN 39
Score = 32.0 bits (72), Expect = 0.17
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 100 QCQKPCAVHS-PCAPNAVCINKNHATDCSCLEGFQGNGFVGCLPVRNYQP 148
Q+ CA + C+ +A C + C C+ + GNG C+ + Q
Sbjct: 3 LAQQTCANNRHQCSVHAECRDYATGFCCRCVANYTGNGRQ-CVAEGSPQR 51
>3fby_A COMP, cartilage oligomeric matrix protein; signature domain, cell
adhesion, disease mutation, dwarfism, EGF-like domain,
glycoprotein, secreted; HET: NAG MAN; 3.15A {Homo
sapiens}
Length = 551
Score = 32.2 bits (73), Expect = 0.14
Identities = 13/75 (17%), Positives = 22/75 (29%), Gaps = 22/75 (29%)
Query: 67 GYEGNPATKCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCIN-KNHATD 125
G +P + C S C +A C+ ++ +
Sbjct: 6 GVPTSPVW--------WNSAQRFCPDGS-------------PSECHEHADCVLERDGSRS 44
Query: 126 CSCLEGFQGNGFVGC 140
C C G+ GNG +
Sbjct: 45 CVCAVGWAGNGILCG 59
Score = 26.8 bits (59), Expect = 7.9
Identities = 15/78 (19%), Positives = 19/78 (24%), Gaps = 25/78 (32%)
Query: 131 GFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRICINPCQEDSCGEHAICIPKNHG 190
G + R CP C EHA C+ + G
Sbjct: 6 GVPTSPVWWNSAQRF----------CPDG--------------SPSECHEHADCVLERDG 41
Query: 191 I-DCQCQSGHQGNPYIAC 207
C C G GN +
Sbjct: 42 SRSCVCAVGWAGNGILCG 59
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 32.1 bits (72), Expect = 0.17
Identities = 21/154 (13%), Positives = 41/154 (26%), Gaps = 25/154 (16%)
Query: 38 EDLCAIASLCAPSAKCHVVKHRPVCTCPQGYEGNPATKCYLPNPLGCVSNEECASTEACI 97
E+ C + + + KC +++ CTC GY + C ECA C
Sbjct: 3 EENCNVNN-GGCAQKCQMIRGAVQCTCHTGYRLTEDGRT-------CQDVNECAEEGYCS 54
Query: 98 NSQCQKPCAVHSPCAPNAVCINKNHATDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCP 157
C N A C C G++ +P+ +
Sbjct: 55 Q-----------------GCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRID 97
Query: 158 PDKLCDRLNRICINPCQEDSCGEHAICIPKNHGI 191
++ + + ++ +
Sbjct: 98 IRQVLPHRSEYTLLLNNLENAIALDFHHRRELVF 131
Score = 30.9 bits (69), Expect = 0.41
Identities = 6/31 (19%), Positives = 12/31 (38%)
Query: 170 INPCQEDSCGEHAICIPKNHGIDCQCQSGHQ 200
C ++ G C + C C +G++
Sbjct: 3 EENCNVNNGGCAQKCQMIRGAVQCTCHTGYR 33
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 30.9 bits (70), Expect = 0.24
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 101 CQKPCAVHSPCAPNAVCINKNHATDCSCLEGFQG 134
C ++ C+ + C+ + C C GF G
Sbjct: 117 CYTAACTNTSCSGHGECVETINNYTCKCDPGFSG 150
Score = 29.0 bits (65), Expect = 0.83
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 159 DKLCDRLNR-IC-INPCQEDSCGEHAICIPKNHGIDCQCQSGHQG 201
D+ C + +C C SC H C+ + C+C G G
Sbjct: 106 DERCSKKKLALCYTAACTNTSCSGHGECVETINNYTCKCDPGFSG 150
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 30.8 bits (70), Expect = 0.25
Identities = 19/89 (21%), Positives = 25/89 (28%), Gaps = 14/89 (15%)
Query: 62 CTCPQGYEGNPATK-CYLPNPLGCVSNEECASTE---ACI----------NSQCQKPCAV 107
C CP +E NP C C + AC + C A
Sbjct: 26 CDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCCCSLGKAW 85
Query: 108 HSPCAPNAVCINKNHATDCSCLEGFQGNG 136
+PC + C EGF+ N
Sbjct: 86 GTPCEMCPAVNTSEYKILCPGGEGFRPNP 114
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein,
membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A
{Homo sapiens}
Length = 164
Score = 30.5 bits (69), Expect = 0.28
Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 13/58 (22%)
Query: 101 CQKPCAVHSPCAPNAVCINKNHATDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPP 158
C C+ + C+ + C+C G+ Y P CQ+ + P
Sbjct: 117 CYTASCQPWSCSGHGECVEIINNYTCNCDVGY-------------YGPQCQFVQVDPR 161
Score = 29.0 bits (65), Expect = 0.87
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 159 DKLCDRLNR-IC-INPCQEDSCGEHAICIPKNHGIDCQCQSGHQGN 202
D C +L +C CQ SC H C+ + C C G+ G
Sbjct: 106 DDACHKLKAALCYTASCQPWSCSGHGECVEIINNYTCNCDVGYYGP 151
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 31.5 bits (70), Expect = 0.31
Identities = 21/122 (17%), Positives = 38/122 (31%), Gaps = 10/122 (8%)
Query: 74 TKCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHATDCSCLEGFQ 133
+ + S C + + C S+C +PC + C + C L +
Sbjct: 38 ISAFFQHFQNNGSLVWCQNHKQC--SKCLEPCKESGDLRKHQ-CQSF-----CEPLFPKK 89
Query: 134 GNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRICINPCQEDS-CGEHAICIPKNHGID 192
+ Y + + + CP + C+ C+ D+ C C G
Sbjct: 90 SYECLTSCEFLKYILLVKQGD-CPAPEKASGFAAACVESCEVDNECSGVKKCCSNGCGHT 148
Query: 193 CQ 194
CQ
Sbjct: 149 CQ 150
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 29.1 bits (66), Expect = 0.34
Identities = 18/103 (17%), Positives = 29/103 (28%), Gaps = 29/103 (28%)
Query: 105 CAVHSPCAPNAVCINKNHATDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDR 164
C C + CIN + + C C G+ G C
Sbjct: 8 CKEPDVC-KHGQCINTDGSYRCECPFGYILAGNE-----------CVD------------ 43
Query: 165 LNRICINPCQEDSCGEHAICIPKNHGIDCQCQSGHQGNPYIAC 207
+ C + + C G +C C+ G + P + C
Sbjct: 44 -----TDECSVGNPCGNGTCKNVIGGFECTCEEGFEPGPMMTC 81
Score = 27.2 bits (61), Expect = 1.7
Identities = 19/79 (24%), Positives = 25/79 (31%), Gaps = 25/79 (31%)
Query: 62 CTCPQGYEGNPATKCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKN 121
C CP GY CV +EC+ C N C N
Sbjct: 28 CECPFGYILAGNE---------CVDTDECSVGNPC----------------GNGTCKNVI 62
Query: 122 HATDCSCLEGFQGNGFVGC 140
+C+C EGF+ + C
Sbjct: 63 GGFECTCEEGFEPGPMMTC 81
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 31.2 bits (70), Expect = 0.39
Identities = 21/144 (14%), Positives = 35/144 (24%), Gaps = 31/144 (21%)
Query: 62 CTCPQGYEGNPATKCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKN 121
C C G+EG + C +C T + + C+ C N
Sbjct: 540 CRCHPGFEG---SAC------------QCERTTEGCLNPRRVECSGRGRCRCNV------ 578
Query: 122 HATDCSCLEGFQG---NGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRICINPCQEDSC 178
C C G+Q GC C + C ++
Sbjct: 579 ----CECHSGYQLPLCQECPGCPSPCGKYISCAECLKFEKGPFGKNCSAACPGLQLSNNP 634
Query: 179 GEHAICIPKNHGIDCQCQSGHQGN 202
+ C ++ C +
Sbjct: 635 VKGRTCKERD---SEGCWVAYTLE 655
Score = 28.9 bits (64), Expect = 2.1
Identities = 19/142 (13%), Positives = 34/142 (23%), Gaps = 5/142 (3%)
Query: 60 PVCTCPQGYEGNPATKCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCIN 119
V T V + + Q C ++C
Sbjct: 380 GVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLPQCECRCRDQSRDRSLCHG 439
Query: 120 KNHATD--CSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRICINPCQEDS 177
K C C G+ G C + + C D + + C +
Sbjct: 440 KGFLECGICRCDTGYIGK---NCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCL 496
Query: 178 CGEHAICIPKNHGIDCQCQSGH 199
C + +G C+C + +
Sbjct: 497 CHTSDVPGKLIYGQYCECDTIN 518
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 29.8 bits (67), Expect = 0.53
Identities = 13/56 (23%), Positives = 16/56 (28%), Gaps = 13/56 (23%)
Query: 101 CQKPCAVHSPCAPNAVCINKNHATDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDC 156
C C+ C+ CSC GF G P C+Y D
Sbjct: 117 CYTASCQDMSCSKQGECLETIGNYTCSCYPGFYG-------------PECEYVRDD 159
Score = 29.4 bits (66), Expect = 0.76
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 159 DKLCDRLNR-IC-INPCQEDSCGEHAICIPKNHGIDCQCQSGHQGN 202
D+ C + +C CQ+ SC + C+ C C G G
Sbjct: 106 DEHCLKKKHALCYTASCQDMSCSKQGECLETIGNYTCSCYPGFYGP 151
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.63
Identities = 38/264 (14%), Positives = 77/264 (29%), Gaps = 69/264 (26%)
Query: 23 DLDCLDAEACYSGQCEDLCAIASLCAPSAKC-HVVKHRPV---------CTCPQGYE--- 69
+ DC D + + +I S + H++ + + E
Sbjct: 32 NFDCKDVQ-------DMPKSILS----KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ 80
Query: 70 ---GNPATKCY--LPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHAT 124
Y L +P+ + T I Q + + A V + +
Sbjct: 81 KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI-EQRDRLYNDNQVFAKYNVSRLQPYLK 139
Query: 125 DCSCLEGFQGNGFV------GC-------LPVRNYQPICQYN---------EDCPPDKLC 162
L + V G +Y+ C+ + P+ +
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199
Query: 163 DRLNRIC--INPCQEDSCGEHAICIPKN-HGIDCQCQSGHQGNPYIACLSELICLCHLYT 219
+ L ++ I+P +H+ I H I + + + PY CL L+ L ++
Sbjct: 200 EMLQKLLYQIDPNWTSRS-DHSSNIKLRIHSIQAELRRLLKSKPYENCL--LV-LLNVQN 255
Query: 220 EEPWHRLPMPERASGQPVHC-VLV 242
+ W A + C +L+
Sbjct: 256 AKAW-------NAFN--LSCKILL 270
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 30.1 bits (68), Expect = 0.69
Identities = 15/101 (14%), Positives = 24/101 (23%), Gaps = 18/101 (17%)
Query: 104 PCAVHSPCAPNAVCINKNHATDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCD 163
PC PC N C + C+C G++G N + ++
Sbjct: 7 PCIS-QPCLHNGSCQDSIWGYTCTCSPGYEG---------SNCE--------LAKNECHP 48
Query: 164 RLNRICINPCQEDSCGEHAICIPKNHGIDCQCQSGHQGNPY 204
C + C C + Q
Sbjct: 49 ERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCA 89
Score = 27.4 bits (61), Expect = 4.4
Identities = 20/101 (19%), Positives = 28/101 (27%), Gaps = 16/101 (15%)
Query: 34 SGQCEDLCAIASLCAPSAKCHVVKHRPVCTCPQGYEG----NPATKCYLPNPLGC----- 84
C C + C CTC GYEG +C+ GC
Sbjct: 5 GSPCIS-----QPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCL 59
Query: 85 --VSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHA 123
+ C+ + + K C H CA + K
Sbjct: 60 PGQESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEKRAP 100
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.72
Identities = 22/149 (14%), Positives = 42/149 (28%), Gaps = 56/149 (37%)
Query: 33 YSGQCEDLCAIASLCAPSAKCHVVKHRPVCTCPQGYEGNPATKCYLPNPLGCVSNEECAS 92
Y+ L ++A + + + VV +R G V +E
Sbjct: 1767 YAA----LASLADVMSIESLVEVVFYR----------GMTMQV--------AVPRDELGR 1804
Query: 93 TEACINSQCQKPCAVHSPCAPNAVCINKNHATDCSCLEGF-QGNGFVGCLPVRNYQPICQ 151
+ + A++ P V + + +E + G++ V N
Sbjct: 1805 SNYGM-------IAIN----PGRVAASFSQEALQYVVERVGKRTGWL-VEIV-N------ 1845
Query: 152 YNEDCPP------------DKLCDRLNRI 168
YN D + + LN I
Sbjct: 1846 YN--VENQQYVAAGDLRALDTVTNVLNFI 1872
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 29.8 bits (67), Expect = 0.77
Identities = 17/124 (13%), Positives = 29/124 (23%), Gaps = 13/124 (10%)
Query: 19 PCQSDLDCLDAEACYSGQCE-DLCAIASLCAPSAKCHVVKHRPVCTCPQGYEGNPATKCY 77
P + + C +A+ + + + T +
Sbjct: 91 PLLGTVPHKASVVQVGFPCLGKQDGVAAFEVDVIVMNSEGNTILKTPQNAIFFKTCQQAE 150
Query: 78 LPNPLGCVSNEECASTEACI------NSQCQKPCAVHSPCAPNAVCINKNHATDCSCLEG 131
P C + C C C+K C +C+ C C G
Sbjct: 151 CPGG--CRNGGFCNERRICECPDGFHGPHCEKALC-TPRCMNGGLCVTPGF---CICPPG 204
Query: 132 FQGN 135
F G
Sbjct: 205 FYGV 208
Score = 29.8 bits (67), Expect = 0.84
Identities = 18/81 (22%), Positives = 25/81 (30%), Gaps = 12/81 (14%)
Query: 61 VCTCPQGYEGNPATKCYLPNPLGCVSNEECASTEACI------NSQCQKPCAVHSPCAPN 114
+C CP G+ G K C++ C + CI C K + C
Sbjct: 166 ICECPDGFHGPHCEKALCTPR--CMNGGLCVTPGFCICPPGFYGVNCDKANC-STTCFNG 222
Query: 115 AVCINKNHATDCSCLEGFQGN 135
C C C G +G
Sbjct: 223 GTCFYPGK---CICPPGLEGE 240
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 30.3 bits (67), Expect = 0.82
Identities = 26/140 (18%), Positives = 41/140 (29%), Gaps = 18/140 (12%)
Query: 45 SLCAPSAKCHVVKHRPVCTCPQGYEGNPATKCYLPNPLGCVSNEECASTEACINSQCQKP 104
+C +AK V + C P C S+ C + C +S+C
Sbjct: 157 DICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSH-GCTAEGLCCHSEC--- 212
Query: 105 CAVHSPCAPNAVCINKNHATDC-SCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCD 163
C + T C +C + V P Y + C C
Sbjct: 213 ---------LGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYH---FQDWRCVNFSFCQ 260
Query: 164 RLNRICINPCQEDSCGEHAI 183
L+ C N + C ++ I
Sbjct: 261 DLHHKCKNSRR-QGCHQYVI 279
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 29.4 bits (65), Expect = 1.2
Identities = 37/227 (16%), Positives = 65/227 (28%), Gaps = 14/227 (6%)
Query: 20 CQSDLDCLDAEACYSGQCEDLCAIASLCAPSAKCHVVKHRPVCTCPQGYEGNPATKCYLP 79
C +D DC D + +C + S+ C + C G + + +C
Sbjct: 146 CDNDPDCEDGSDEWPQRC---RGLYVFQGDSSPCSAFEFH----CLSGECIHSSWRCDGG 198
Query: 80 NPLGCVSNEECASTEACINSQCQ----KPCAVHSPCAPNAVCINKNHATDCSCLEGFQGN 135
S+EE + C + Q C C + + C + +G
Sbjct: 199 PDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGP 258
Query: 136 GFVGCLPVRNYQP--ICQYNEDCPPDKLCDRLNRICINPCQEDSCGEHAICIPKNHGIDC 193
C +C DC D + + N C +++ G +C G +C
Sbjct: 259 NKFKCHSGECITLDKVCNMARDCR-DWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYEC 317
Query: 194 QCQSGHQGNPYIACLSELICLCHLYTEEPWHRLPMPERASGQPVHCV 240
C G Q C C + L + + +
Sbjct: 318 LCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQL 364
Score = 29.0 bits (64), Expect = 1.7
Identities = 23/167 (13%), Positives = 43/167 (25%), Gaps = 6/167 (3%)
Query: 60 PVCTCPQGYEGNPATKCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCIN 119
V C + + + C +C +C + + + VC +
Sbjct: 251 NVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCND 310
Query: 120 KNHATDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRICINPCQEDSCG 179
+C C +GFQ C + I + + +LC L C+E
Sbjct: 311 LKIGYECLCPDGFQLVAQRRC------EDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQL 364
Query: 180 EHAICIPKNHGIDCQCQSGHQGNPYIACLSELICLCHLYTEEPWHRL 226
+ K G ++ L + L
Sbjct: 365 DPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVAL 411
Score = 29.0 bits (64), Expect = 1.8
Identities = 17/137 (12%), Positives = 31/137 (22%), Gaps = 3/137 (2%)
Query: 20 CQSDLDCLDAEACYSGQCEDLCAIASLCAPSAKCHVVKHRPVCTCPQGYEGNPATKCYLP 79
C DC D +C + + S C+ +K C CP G++ +C
Sbjct: 275 CNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDI 334
Query: 80 NPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHATDCSCLEGFQGNGFVG 139
+ +C K + +
Sbjct: 335 DECQDPDTCSQLCVNLEGGYKC---QCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKM 391
Query: 140 CLPVRNYQPICQYNEDC 156
L Y + +
Sbjct: 392 TLDRSEYTSLIPNLRNV 408
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 29.4 bits (66), Expect = 1.2
Identities = 12/135 (8%), Positives = 26/135 (19%), Gaps = 11/135 (8%)
Query: 76 CYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHATDCSCLEGFQ-- 133
C L ++ + C P ++ + E
Sbjct: 255 CLLKT-SESGLPSTRIKKSKALSGFSLQSCRHSIPVFCHSSFYHDT----DFLGEELDIV 309
Query: 134 -GNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRIC---INPCQEDSCGEHAICIPKNH 189
C + CQ+ P C+ C ++ + H +
Sbjct: 310 AAKSHEACQKLCTNAVRCQFFTYTPAQASCNEGKGKCYLKLSSNGSPTKILHGRGGISGY 369
Query: 190 GIDCQCQSGHQGNPY 204
+
Sbjct: 370 TLRLCKMDNECTTKI 384
Score = 28.7 bits (64), Expect = 2.4
Identities = 17/129 (13%), Positives = 25/129 (19%), Gaps = 9/129 (6%)
Query: 4 STVQCALPGTAKVPRPCQSDLDCLDAEACYSGQCEDLCAIAS-LCAPSAKCHVVKHRPVC 62
T + LP T S C + K C
Sbjct: 258 KTSESGLPSTRIKKSKALSGFSLQSCRHSIPVFCHSSFYHDTDFLGEELDIVAAKSHEAC 317
Query: 63 --TCP-----QGYEGNPATK-CYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPN 114
C Q + PA C + S ++ + C +
Sbjct: 318 QKLCTNAVRCQFFTYTPAQASCNEGKGKCYLKLSSNGSPTKILHGRGGISGYTLRLCKMD 377
Query: 115 AVCINKNHA 123
C K
Sbjct: 378 NECTTKIKP 386
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 28.9 bits (64), Expect = 1.4
Identities = 12/61 (19%), Positives = 16/61 (26%), Gaps = 17/61 (27%)
Query: 31 ACYSGQCEDLCAIASLCAPSAKCHVVKHRPVCTCPQGYEGNPATKCYLPNPLGCVSNEEC 90
+G C LC L +P + C CP G + K C
Sbjct: 271 GIDNGGCSHLC----LMSPVKPFYQ------CACPTGVKLLENGKT-------CKDGNSH 313
Query: 91 A 91
Sbjct: 314 H 314
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin
receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo
sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
Length = 478
Score = 29.0 bits (64), Expect = 1.5
Identities = 20/196 (10%), Positives = 38/196 (19%), Gaps = 6/196 (3%)
Query: 25 DCLDAEACYSGQCEDLCAIASLCAPSAKCHVVKHRPVCTCPQGYEGNPATKCYLPNPLGC 84
LDA + P + T
Sbjct: 129 LILDAVSNNYIVGNKPPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQKMCPST 188
Query: 85 VSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHATDC--SCLEGFQGNGFVGCLP 142
C C + +C C+ C + +A C +C C+
Sbjct: 189 CGKRACTENNECCHPECLGSCSAPDNDTACVACRHYYYAGVCVPACPPNTYRFEGWRCVD 248
Query: 143 VRNYQPICQYNEDCPPDKLCDRLNRICINPCQEDSCGEHAICI--PKNHGIDCQCQSGHQ 200
I + + C+ C + + G + +
Sbjct: 249 RDFCANILSAESSDSEGFVIH--DGECMQECPSGFIRNGSQSMYCIPCEGPCPKVCEEEK 306
Query: 201 GNPYIACLSELICLCH 216
I ++ L
Sbjct: 307 KTKTIDSVTSAQMLQG 322
Score = 27.5 bits (60), Expect = 5.8
Identities = 21/199 (10%), Positives = 39/199 (19%), Gaps = 10/199 (5%)
Query: 17 PRPCQSDLDCLDAEACYSGQCEDLCAIASLCAPSAKCHVVKHRPVCTCPQGYEGNPATKC 76
+P + D CE + + TC + C
Sbjct: 142 NKPPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQKMCPSTCGKRACTENNECC 201
Query: 77 YLPNPLGCVSNEECASTEAC----INSQCQKPCAVHS------PCAPNAVCINKNHATDC 126
+ C + + + AC C C ++ C C N A
Sbjct: 202 HPECLGSCSAPDNDTACVACRHYYYAGVCVPACPPNTYRFEGWRCVDRDFCANILSAESS 261
Query: 127 SCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRICINPCQEDSCGEHAICIP 186
+G + + C P + + A +
Sbjct: 262 DSEGFVIHDGECMQECPSGFIRNGSQSMYCIPCEGPCPKVCEEEKKTKTIDSVTSAQMLQ 321
Query: 187 KNHGIDCQCQSGHQGNPYI 205
+ I
Sbjct: 322 GCTIFKGNLLINIRRGNNI 340
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 27.4 bits (61), Expect = 2.4
Identities = 17/99 (17%), Positives = 27/99 (27%), Gaps = 27/99 (27%)
Query: 105 CAVHSPCAPNAVCINKNHATDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDR 164
S C + CI+ + C C G++G CQ
Sbjct: 16 HPCASLCCGHGTCIDGIGSFSCDCRSGWEGRF-------------CQREVS--------- 53
Query: 165 LNRICINPCQEDSCGEHAICIPKNHGIDCQCQSGHQGNP 203
C D+ G C+ + C C G++
Sbjct: 54 -----FLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGD 87
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 28.1 bits (62), Expect = 2.8
Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 13/59 (22%)
Query: 28 DAEACYSGQCEDLCAIASLCAPSAKCHVVKHRPVCTCPQGYEGNPATKCYLPNPLGCVS 86
+ +G C+ LC A P + + C CP G + C++
Sbjct: 271 ERTTLSNGGCQYLCLPAPQINPHSP------KFTCACPDGMLLA-------RDMRSCLT 316
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 27.3 bits (61), Expect = 3.2
Identities = 9/79 (11%), Positives = 14/79 (17%)
Query: 62 CTCPQGYEGNPATKCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKN 121
C C +P + G + S
Sbjct: 26 CECSSESTLDPTKTICIETIKGTCWQTVIDGRCEININGATLKSQCCSSLGAAWGSPCTL 85
Query: 122 HATDCSCLEGFQGNGFVGC 140
D C +G+ C
Sbjct: 86 CQVDPICGKGYSRIKGTQC 104
Score = 26.2 bits (58), Expect = 7.0
Identities = 12/97 (12%), Positives = 20/97 (20%), Gaps = 9/97 (9%)
Query: 114 NAVCINKNHATDCSCLEGFQGNGFVGCLPVRNYQPICQ---YNEDCPPDKLCDRLNRICI 170
N VC N + C C + + + +
Sbjct: 14 NGVCKNSPGSFICECSSESTLDPTK-----TICIETIKGTCWQTVIDGRCEININGATLK 68
Query: 171 NPCQEDSCGEHAICIPKNHGIDCQCQSGHQGNPYIAC 207
+ C G +D C G+ C
Sbjct: 69 SQCCSS-LGAAWGSPCTLCQVDPICGKGYSRIKGTQC 104
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 27.3 bits (61), Expect = 3.5
Identities = 13/94 (13%), Positives = 30/94 (31%), Gaps = 29/94 (30%)
Query: 109 SPCAPNAVCINKNHATDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRI 168
+PC +C + ++ +C C GF+G C+ + C
Sbjct: 54 NPCLNGGLCKDDINSYECWCQVGFEG-------------KNCELDATC------------ 88
Query: 169 CINPCQEDSCGEHAICIPKNHGIDCQCQSGHQGN 202
++ + + + C C +G++
Sbjct: 89 ----NIKNGRCKQFCKTGADSKVLCSCTTGYRLA 118
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 27.4 bits (61), Expect = 4.2
Identities = 18/94 (19%), Positives = 27/94 (28%), Gaps = 28/94 (29%)
Query: 109 SPCAPNAVCINKNHATDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRI 168
SPC C + C+CLEGF+G C+
Sbjct: 48 SPCQNQGKCKDGLGEYTCTCLEGFEGKN-------------CELFTR------------- 81
Query: 169 CINPCQEDSCGEHAICIPKNHGIDCQCQSGHQGN 202
C D+ C + + + C C G+
Sbjct: 82 --KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLA 113
Score = 27.0 bits (60), Expect = 5.0
Identities = 22/157 (14%), Positives = 35/157 (22%), Gaps = 54/157 (34%)
Query: 47 CAPSAKCHVVKHRPVCTCPQGYEGNPATKCYLPNPLGCVSNEECASTEACINSQCQKPCA 106
C KC CTC +G+EG C + + C+
Sbjct: 50 CQNQGKCKDGLGEYTCTCLEGFEG---KNC------ELFTRKLCSL-------------- 86
Query: 107 VHSPCAPNAVCINKNHATDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLN 166
+ C + ++ CSC G+
Sbjct: 87 --DNGDCDQFCHEEQNSVVCSCARGYTLA-------------DNGKA------------- 118
Query: 167 RICINPCQEDSCGEHAICIPKNHGIDCQCQSGHQGNP 203
P CG+ + K SG +
Sbjct: 119 ---CIPTGPYPCGKQTLERRKRSVAQATSSSGEAPDS 152
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 26.8 bits (60), Expect = 4.5
Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 29/93 (31%)
Query: 109 SPCAPNAVCINKNHATDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRI 168
+PC +A C+++ C C+ G++G C+ N
Sbjct: 51 NPCQNDATCLDQIGEFQCICMPGYEG-------------VHCEVN--------------- 82
Query: 169 CINPCQEDSCGEHAICIPKNHGIDCQCQSGHQG 201
+ C C + C+ K + C+C +G G
Sbjct: 83 -TDECASSPCLHNGRCLDKINEFQCECPTGFTG 114
Score = 26.4 bits (59), Expect = 5.5
Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 29/94 (30%)
Query: 108 HSPCAPNAVCINKNHATDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNR 167
+PC CIN + +C CL+G+ G P C+ +
Sbjct: 12 ANPCEHAGKCINTLGSFECQCLQGYTG-------------PRCEID-------------- 44
Query: 168 ICINPCQEDSCGEHAICIPKNHGIDCQCQSGHQG 201
+N C + C A C+ + C C G++G
Sbjct: 45 --VNECVSNPCQNDATCLDQIGEFQCICMPGYEG 76
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 27.5 bits (60), Expect = 5.3
Identities = 19/146 (13%), Positives = 36/146 (24%)
Query: 20 CQSDLDCLDAEACYSGQCEDLCAIASLCAPSAKCHVVKHRPVCTCPQGYEGNPATKCYLP 79
C DC D +C + + S C+ +K C CP G++ +C
Sbjct: 293 CNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDI 352
Query: 80 NPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHATDCSCLEGFQGNGFVG 139
+ +CQ A + A +
Sbjct: 353 DECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLD 412
Query: 140 CLPVRNYQPICQYNEDCPPDKLCDRL 165
+ P + + +R+
Sbjct: 413 RSEYTSLIPNLRNVVALDTEVASNRI 438
Score = 27.1 bits (59), Expect = 6.4
Identities = 32/196 (16%), Positives = 52/196 (26%), Gaps = 13/196 (6%)
Query: 18 RPCQSDLDCLDAEACYSGQCEDLCAIASLCAPSAKCHVVKHRPVCTCPQGYEGNPATKCY 77
C D C G C + C C + C EG KC+
Sbjct: 226 ENCAVATCRPDEFQCSDGNC---IHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCH 282
Query: 78 ----LPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINKNHATDCSCLEGFQ 133
+ C +C +C + + + VC + +C C +GFQ
Sbjct: 283 SGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQ 342
Query: 134 GNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRICINPCQEDSCGEHAICIPKNHGIDC 193
C + I + + +LC L C+E + K G
Sbjct: 343 LVAQRRC------EDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIA 396
Query: 194 QCQSGHQGNPYIACLS 209
++ L
Sbjct: 397 YLFFTNRHEVRKMTLD 412
>3nkq_A Ectonucleotide pyrophosphatase/phosphodiesterase member 2;
lysophospholipase D, autotaxin, ENPP2, lysophosphatidic
acid hydrolase; HET: NAG BMA MAN NKQ; 1.70A {Mus
musculus} PDB: 3nkm_A* 3nkn_A* 3nkp_A* 3nko_A* 3nkr_A*
2xrg_A* 2xr9_A*
Length = 831
Score = 27.6 bits (60), Expect = 5.5
Identities = 30/180 (16%), Positives = 52/180 (28%), Gaps = 22/180 (12%)
Query: 69 EGNPATKCYLP--NPLG-CVSNEECASTEACINSQCQKPCAVHSPCAP--NAVCINKNHA 123
EG P P N G C + +C C +S C + +C+
Sbjct: 5 EGPPTVLSDSPWTNTSGSCKGRCFELQEVGPPDCRCDNLCKSYSSCCHDFDELCLKTARG 64
Query: 124 TDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRICINPCQEDSCGEHAI 183
+C+ C VRN + C +EDC C C N + C +
Sbjct: 65 WECTKDR---------CGEVRNEENACHCSEDCLSRGDC------CTN--YQVVCKGESH 107
Query: 184 CIPKNHGIDCQCQSGHQGNPYIACLSELICLCHLYTEEPWHRLPMPERASGQPVHCVLVR 243
+ + + + + Y ++ +P E+ H +R
Sbjct: 108 WVDDDCEEIRVPECPAGFVRPPLIIFSVDGFRASYMKKGSKVMPNIEKLRSCGTHAPYMR 167
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 26.5 bits (59), Expect = 5.5
Identities = 18/93 (19%), Positives = 27/93 (29%), Gaps = 28/93 (30%)
Query: 109 SPCAPNAVCINKNHATDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRI 168
SPC C + C+CLEGF+G C+
Sbjct: 48 SPCQNQGKCKDGLGEYTCTCLEGFEG-------------KNCELFTR------------- 81
Query: 169 CINPCQEDSCGEHAICIPKNHGIDCQCQSGHQG 201
C D+ C + + + C C G+
Sbjct: 82 --KLCSLDNGDCDQFCHEEQNSVVCSCARGYTL 112
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex,
transferase-growth F complex; HET: NAG FUC BMA MAN;
2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1
Length = 501
Score = 26.8 bits (58), Expect = 8.1
Identities = 21/143 (14%), Positives = 32/143 (22%), Gaps = 14/143 (9%)
Query: 61 VCTCPQGYEGNPATKCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPCAPNAVCINK 120
TCP NP T NP G + C K C + + C+
Sbjct: 237 KDTCPPLMLYNPTTYQMDVNPEGK----------YSFGATCVKKCPRNYVVTDHGSCVRA 286
Query: 121 NHATDCSCLEGFQGNGFVGCLPVRNYQPICQYNEDCPPDKLCDRLNRICINPCQEDSCGE 180
A + +G C K +N I + +
Sbjct: 287 CGADSYEM----EEDGVRKCKKCEGPCRKVCNGIGIGEFKDSLSINATNIKHFKNCTSIS 342
Query: 181 HAICIPKNHGIDCQCQSGHQGNP 203
+ I +P
Sbjct: 343 GDLHILPVAFRGDSFTHTPPLDP 365
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET:
NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 26.8 bits (58), Expect = 8.7
Identities = 14/79 (17%), Positives = 22/79 (27%), Gaps = 3/79 (3%)
Query: 104 PCAVHSPCAPNAVCINKNHATDCSCLEGFQGNG-FVGCLPVRNYQPICQYNEDCPPDKLC 162
CA C+ C N A C C G++ C + + N L
Sbjct: 3 ECAEEGYCSQ--GCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLP 60
Query: 163 DRLNRICINPCQEDSCGEH 181
R + E++
Sbjct: 61 HRSEYTLLLNNLENAIALD 79
Score = 26.4 bits (57), Expect = 9.4
Identities = 15/90 (16%), Positives = 26/90 (28%), Gaps = 3/90 (3%)
Query: 39 DLCAIASLCAPSAKCHVVKHRPVCTCPQGYEGNPATKCYLPNPLGCVSNEECASTEACIN 98
+ CA C S C + C C GYE P + V +
Sbjct: 2 NECAEEGYC--SQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLL-FANRIDIRQV 58
Query: 99 SQCQKPCAVHSPCAPNAVCINKNHATDCSC 128
+ + NA+ ++ +H +
Sbjct: 59 LPHRSEYTLLLNNLENAIALDFHHRRELVF 88
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 26.2 bits (56), Expect = 8.7
Identities = 23/137 (16%), Positives = 30/137 (21%), Gaps = 23/137 (16%)
Query: 21 QSDLDCLDAEACYSGQCEDLCAIASLCAPSAKCHVVKHRPVCTCPQGYEGNPATK----- 75
S+ C + C C C + C C +GY T
Sbjct: 36 LSENTCEEXNECXXETLGXACGEFGQCI-ENPDPAQVNMYXCGCIEGYTLXEDTCVLDVC 94
Query: 76 CYLPNPLGCVSNEECASTEACINSQCQKPCAVHS-----------------PCAPNAVCI 118
Y E S C + N VC
Sbjct: 95 QYXNCGESGECIVEYLSEIQSAGCSCAIGXVPNPEDEXXCTXTGETACQLXCNTDNEVCX 154
Query: 119 NKNHATDCSCLEGFQGN 135
N C C+EGF +
Sbjct: 155 NVEGVYXCQCMEGFTFD 171
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.137 0.480
Gapped
Lambda K H
0.267 0.0564 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,826,042
Number of extensions: 225875
Number of successful extensions: 1219
Number of sequences better than 10.0: 1
Number of HSP's gapped: 816
Number of HSP's successfully gapped: 360
Length of query: 257
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 165
Effective length of database: 4,133,061
Effective search space: 681955065
Effective search space used: 681955065
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.7 bits)