RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy590
         (257 letters)



>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 40

 Score = 28.7 bits (64), Expect = 0.066
 Identities = 8/29 (27%), Positives = 13/29 (44%)

Query: 110 PCAPNAVCINKNHATDCSCLEGFQGNGFV 138
            C+ +A C +      C C+  + GNG  
Sbjct: 8   QCSVHAECRDYATGFCCRCVANYTGNGRQ 36



 Score = 24.8 bits (54), Expect = 1.6
 Identities = 9/27 (33%), Positives = 12/27 (44%)

Query: 176 DSCGEHAICIPKNHGIDCQCQSGHQGN 202
             C  HA C     G  C+C + + GN
Sbjct: 7   HQCSVHAECRDYATGFCCRCVANYTGN 33


>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 43

 Score = 26.3 bits (58), Expect = 0.50
 Identities = 8/33 (24%), Positives = 15/33 (45%)

Query: 170 INPCQEDSCGEHAICIPKNHGIDCQCQSGHQGN 202
           ++ C+E    +H  CI  +    C+C  G+   
Sbjct: 5   MDECKEPDVCKHGQCINTDGSYRCECPFGYILA 37



 Score = 23.6 bits (51), Expect = 5.3
 Identities = 7/28 (25%), Positives = 11/28 (39%)

Query: 109 SPCAPNAVCINKNHATDCSCLEGFQGNG 136
                +  CIN + +  C C  G+   G
Sbjct: 11  PDVCKHGQCINTDGSYRCECPFGYILAG 38


>d2j01e1 b.43.3.2 (E:1-205) Ribosomal protein L3 {Thermus
           thermophilus [TaxId: 274]}
          Length = 205

 Score = 28.5 bits (63), Expect = 0.71
 Identities = 8/86 (9%), Positives = 14/86 (16%), Gaps = 3/86 (3%)

Query: 52  KCHVVKHRPVCTCPQGYEGNPATKCYLPNPLGCVSNEECASTEACINSQCQKPCAVHSPC 111
            C VV+ R                         +      +    +    +         
Sbjct: 30  PCPVVQRRTPEKDGYTAVQLGFLPQNPKRVNRPLKGHFAKAGVEPVRILREIRDFNPEGD 89

Query: 112 APNAVCINKNHATDCSCL---EGFQG 134
                        D +      GF G
Sbjct: 90  TVTVEIFKPGERVDVTGTSKGRGFAG 115


>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 44

 Score = 25.9 bits (57), Expect = 0.71
 Identities = 7/35 (20%), Positives = 13/35 (37%)

Query: 105 CAVHSPCAPNAVCINKNHATDCSCLEGFQGNGFVG 139
           C +         C+N     +C C EG++    + 
Sbjct: 6   CRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMM 40


>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 43

 Score = 26.0 bits (57), Expect = 0.80
 Identities = 7/34 (20%), Positives = 12/34 (35%)

Query: 170 INPCQEDSCGEHAICIPKNHGIDCQCQSGHQGNP 203
           +N C + +      C+       C C    + NP
Sbjct: 3   VNECLDPTTCISGNCVNTPGSYICDCPPDFELNP 36


>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein
           1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 42

 Score = 25.5 bits (56), Expect = 1.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 109 SPCAPNAVCINKNHATDCSCLEGFQGN 135
           +PC     CIN   + +C CL+G+ G 
Sbjct: 11  NPCEHAGKCINTLGSFECQCLQGYTGP 37



 Score = 22.8 bits (49), Expect = 8.9
 Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 2/35 (5%)

Query: 170 INPCQEDS--CGEHAICIPKNHGIDCQCQSGHQGN 202
           ++ C   +  C     CI      +CQC  G+ G 
Sbjct: 3   VDECSLGANPCEHAGKCINTLGSFECQCLQGYTGP 37


>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein
           1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 39

 Score = 25.0 bits (55), Expect = 1.6
 Identities = 9/32 (28%), Positives = 15/32 (46%)

Query: 170 INPCQEDSCGEHAICIPKNHGIDCQCQSGHQG 201
           +N C  + C   A C+ +     C C  G++G
Sbjct: 1   VNECVSNPCQNDATCLDQIGEFQCICMPGYEG 32



 Score = 23.9 bits (52), Expect = 3.1
 Identities = 8/26 (30%), Positives = 16/26 (61%)

Query: 109 SPCAPNAVCINKNHATDCSCLEGFQG 134
           +PC  +A C+++     C C+ G++G
Sbjct: 7   NPCQNDATCLDQIGEFQCICMPGYEG 32


>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 39

 Score = 24.6 bits (54), Expect = 1.7
 Identities = 7/32 (21%), Positives = 13/32 (40%)

Query: 170 INPCQEDSCGEHAICIPKNHGIDCQCQSGHQG 201
            + C+ + C     C    +  +C C  G +G
Sbjct: 3   GDQCESNPCLNGGSCKDDINSYECWCPFGFEG 34



 Score = 24.6 bits (54), Expect = 2.3
 Identities = 8/26 (30%), Positives = 14/26 (53%)

Query: 109 SPCAPNAVCINKNHATDCSCLEGFQG 134
           +PC     C +  ++ +C C  GF+G
Sbjct: 9   NPCLNGGSCKDDINSYECWCPFGFEG 34


>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa)
           [TaxId: 9823]}
          Length = 37

 Score = 24.3 bits (53), Expect = 2.5
 Identities = 6/32 (18%), Positives = 9/32 (28%)

Query: 170 INPCQEDSCGEHAICIPKNHGIDCQCQSGHQG 201
            + C    C     C  +     C C    +G
Sbjct: 2   GDQCASSPCQNGGSCKDQLQSYICFCLPAFEG 33



 Score = 24.3 bits (53), Expect = 2.7
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query: 109 SPCAPNAVCINKNHATDCSCLEGFQG 134
           SPC     C ++  +  C CL  F+G
Sbjct: 8   SPCQNGGSCKDQLQSYICFCLPAFEG 33


>d1v74b_ a.24.20.1 (B:) Colicin D immunity protein {Escherichia coli
           [TaxId: 562]}
          Length = 87

 Score = 25.2 bits (55), Expect = 3.1
 Identities = 3/17 (17%), Positives = 5/17 (29%)

Query: 206 ACLSELICLCHLYTEEP 222
            C  EL      +  + 
Sbjct: 46  NCGEELFMAAERFEPDA 62


>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 39

 Score = 24.0 bits (52), Expect = 3.3
 Identities = 9/31 (29%), Positives = 12/31 (38%)

Query: 171 NPCQEDSCGEHAICIPKNHGIDCQCQSGHQG 201
             C   SC  H  C+   +   C+C  G  G
Sbjct: 2   AACTNTSCSGHGECVETINNYTCKCDPGFSG 32



 Score = 22.8 bits (49), Expect = 8.5
 Identities = 7/26 (26%), Positives = 12/26 (46%)

Query: 109 SPCAPNAVCINKNHATDCSCLEGFQG 134
           + C+ +  C+   +   C C  GF G
Sbjct: 7   TSCSGHGECVETINNYTCKCDPGFSG 32


>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 39

 Score = 23.9 bits (52), Expect = 3.8
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 109 SPCAPNAVCINKNHATDCSCLEGFQG 134
           SPC     C +      C+CLEGF+G
Sbjct: 6   SPCQNQGKCKDGLGEYTCTCLEGFEG 31


>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 40

 Score = 23.6 bits (51), Expect = 4.4
 Identities = 9/31 (29%), Positives = 12/31 (38%)

Query: 171 NPCQEDSCGEHAICIPKNHGIDCQCQSGHQG 201
             CQ+ SC +   C+       C C  G  G
Sbjct: 2   ASCQDMSCSKQGECLETIGNYTCSCYPGFYG 32



 Score = 22.8 bits (49), Expect = 9.4
 Identities = 8/26 (30%), Positives = 10/26 (38%)

Query: 109 SPCAPNAVCINKNHATDCSCLEGFQG 134
             C+    C+       CSC  GF G
Sbjct: 7   MSCSKQGECLETIGNYTCSCYPGFYG 32


>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein
           1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 35

 Score = 23.5 bits (51), Expect = 5.2
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 109 SPCAPNAVCINKNHATDCSCLEGFQG 134
           SPC  N  C++K +   C C  GF G
Sbjct: 6   SPCLHNGRCLDKINEFQCECPTGFTG 31


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.137    0.480 

Gapped
Lambda     K      H
   0.267   0.0383    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,004,888
Number of extensions: 52611
Number of successful extensions: 350
Number of sequences better than 10.0: 1
Number of HSP's gapped: 305
Number of HSP's successfully gapped: 164
Length of query: 257
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 174
Effective length of database: 1,268,006
Effective search space: 220633044
Effective search space used: 220633044
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.7 bits)