BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy5901
         (122 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2WV8|A Chain A, Complex Of Human Dihydroorotate Dehydrogenase With The
          Inhibitor 221290
          Length = 365

 Score = 37.0 bits (84), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 41 LLPILFKF-DAETAHNIAIWTAKYKLLPKSVYEDPPQLASQVWNLKFPNPLA 91
          L+P L    D E+AH +A+      LLP++ ++D   L  +V   KF NP+ 
Sbjct: 11 LMPTLQGLLDPESAHRLAVRFTSLGLLPRARFQDSDMLEVRVLGHKFRNPVG 62


>pdb|1UUM|A Chain A, Rat Dihydroorotate Dehydrogenase (Dhod)in Complex With
          Atovaquone
 pdb|1UUM|B Chain B, Rat Dihydroorotate Dehydrogenase (Dhod)in Complex With
          Atovaquone
 pdb|1UUO|A Chain A, Rat Dihydroorotate Dehydrogenase (Dhod)in Complex With
          Brequinar
          Length = 372

 Score = 35.0 bits (79), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 41 LLPILFKF-DAETAHNIAIWTAKYKLLPKSVYEDPPQLASQVWNLKFPNPLA 91
          L+P L +  D E+AH +A+      LLP++ ++D   L  +V   KF NP+ 
Sbjct: 18 LMPGLQRLLDPESAHRLAVRVTSLGLLPRATFQDSDMLEVKVLGHKFRNPVG 69


>pdb|3U2O|A Chain A, Dihydroorotate Dehydrogenase (Dhodh) Crystal Structure
          In Complex With Small Molecule Inhibitor
          Length = 395

 Score = 33.5 bits (75), Expect = 0.030,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 41 LLPILFKF-DAETAHNIAIWTAKYKLLPKSVYEDPPQLASQVWNLKFPNPLA 91
          L+P L    D E+AH +A+      LLP++ ++D   L  +V   KF NP+ 
Sbjct: 41 LMPTLQGLLDPESAHRLAVRFTSLGLLPRARFQDSDMLEVRVLGHKFRNPVG 92


>pdb|2B0M|A Chain A, Human Dihydroorotate Dehydrogenase Bound To A Novel
          Inhibitor
          Length = 393

 Score = 33.5 bits (75), Expect = 0.030,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 41 LLPILFKF-DAETAHNIAIWTAKYKLLPKSVYEDPPQLASQVWNLKFPNPLA 91
          L+P L    D E+AH +A+      LLP++ ++D   L  +V   KF NP+ 
Sbjct: 39 LMPTLQGLLDPESAHRLAVRFTSLGLLPRARFQDSDMLEVRVLGHKFRNPVG 90


>pdb|3KVJ|A Chain A, Crystal Structure Of Human Dihydroorotate Dehydrogenase
          (Dhodh) With Amino-Benzoic Acid Inhibitor 105 At 1.94a
          Resolution
 pdb|3KVK|A Chain A, Crystal Structure Of Human Dihydroorotate Dehydrogenase
          (Dhodh) With Amino-Benzoic Acid Inhibitor 641 At 2.05a
          Resolution
 pdb|3KVL|A Chain A, Crystal Structure Of Human Dihydroorotate Dehydrogenase
          (Dhodh) With Amino-Benzoic Acid Inhibitor 715 At 1.85a
          Resolution
 pdb|3KVM|A Chain A, Crystal Structure Of Human Dihydroorotate Dehydrogenase
          (Dhodh) With Amino-Benzoic Acid Inhibitor 951 At 2.00a
          Resolution
          Length = 390

 Score = 33.5 bits (75), Expect = 0.030,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 41 LLPILFKF-DAETAHNIAIWTAKYKLLPKSVYEDPPQLASQVWNLKFPNPLA 91
          L+P L    D E+AH +A+      LLP++ ++D   L  +V   KF NP+ 
Sbjct: 36 LMPTLQGLLDPESAHRLAVRFTSLGLLPRARFQDSDMLEVRVLGHKFRNPVG 87


>pdb|2FPT|A Chain A, Dual Binding Mode Of A Novel Series Of Dhodh Inhibitors
 pdb|2FPV|A Chain A, Dual Binding Mode Of A Novel Series Of Dhodh Inhibitors
 pdb|2FPY|A Chain A, Dual Binding Mode Of A Novel Series Of Dhodh Inhibitors
 pdb|2FQI|A Chain A, Dual Binding Modes Of A Novel Series Of Dhodh Inhibitors
          Length = 395

 Score = 33.5 bits (75), Expect = 0.035,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 41 LLPILFKF-DAETAHNIAIWTAKYKLLPKSVYEDPPQLASQVWNLKFPNPLA 91
          L+P L    D E+AH +A+      LLP++ ++D   L  +V   KF NP+ 
Sbjct: 41 LMPTLQGLLDPESAHRLAVRFTSLGLLPRARFQDSDMLEVRVLGHKFRNPVG 92


>pdb|1D3G|A Chain A, Human Dihydroorotate Dehydrogenase Complexed With
          Brequinar Analog
 pdb|1D3H|A Chain A, Human Dihydroorotate Dehydrogenase Complexed With
          Antiproliferative Agent A771726
 pdb|2BXV|A Chain A, Dual Binding Mode Of A Novel Series Of Dhodh Inhibitors
 pdb|2PRH|A Chain A, The Structures Of Apo- And Inhibitor Bound Human
          Dihydroorotate Dehydrogenase Reveal Conformational
          Flexibility Within The Inhibitor Binding Site
 pdb|2PRL|A Chain A, The Structures Of Apo- And Inhibitor Bound Human
          Dihydroorotate Dehydrogenase Reveal Conformational
          Flexibility Within The Inhibitor Binding Site
 pdb|2PRM|A Chain A, The Structures Of Apo- And Inhibitor Bound Human
          Dihydroorotate Dehydrogenase Reveal Conformational
          Flexibility Within The Inhibitor Binding Site
 pdb|3F1Q|A Chain A, Human Dihydroorotate Dehydrogenase In Complex With A
          Leflunomide Derivative Inhibitor 1
 pdb|3FJ6|A Chain A, Human Dihydroorotate Dehydrogenase In Complex With A
          Leflunomide Derivative Inhibitor 2
 pdb|3FJL|A Chain A, Human Dihydroorotate Dehydrogenase In Complex With A
          Leflunomide Derivative Inhibitor 3
 pdb|3G0U|A Chain A, Human Dihydroorotate Dehydrogenase In Complex With A
          Leflunomide Derivative Inhibitor 4
 pdb|3G0X|A Chain A, Human Dihydroorotate Dehydrogenase In Complex With A
          Leflunomide Derivative Inhibitor 5
 pdb|3ZWS|A Chain A, Structure Of Human Dihydroorotate Dehydrogenase With A
          Bound Inhibitor
 pdb|3ZWT|A Chain A, Structure Of Human Dihydroorotate Dehydrogenase With A
          Bound Inhibitor
          Length = 367

 Score = 33.1 bits (74), Expect = 0.036,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 41 LLPILFKF-DAETAHNIAIWTAKYKLLPKSVYEDPPQLASQVWNLKFPNPLA 91
          L+P L    D E+AH +A+      LLP++ ++D   L  +V   KF NP+ 
Sbjct: 13 LMPTLQGLLDPESAHRLAVRFTSLGLLPRARFQDSDMLEVRVLGHKFRNPVG 64


>pdb|1TV5|A Chain A, Plasmodium Falciparum Dihydroorotate Dehydrogenase With
          A Bound Inhibitor
          Length = 443

 Score = 29.3 bits (64), Expect = 0.57,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 5/56 (8%)

Query: 41 LLPILFKF-----DAETAHNIAIWTAKYKLLPKSVYEDPPQLASQVWNLKFPNPLA 91
          L  I  KF     D E  H++ +   KY +LP     D     + + +L F NP  
Sbjct: 41 LYDIFLKFCLKYIDGEICHDLFLLLGKYNILPYDTSNDSIYACTNIKHLDFINPFG 96


>pdb|3SFK|A Chain A, Crystal Structure Of Plasmodium Falciparum
          Dihydroorotate Dehydrogenase Bound With Inhibitor
          Dsm267
          Length = 400

 Score = 29.3 bits (64), Expect = 0.57,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 5/56 (8%)

Query: 41 LLPILFKF-----DAETAHNIAIWTAKYKLLPKSVYEDPPQLASQVWNLKFPNPLA 91
          L  I  KF     D E  H++ +   KY +LP     D     + + +L F NP  
Sbjct: 28 LYDIFLKFCLKYIDGEICHDLFLLLGKYNILPYDTSNDSIYACTNIKHLDFINPFG 83


>pdb|3I65|A Chain A, Plasmodium Falciparum Dihydroorotate Dehydrogenase Bound
          With Triazolopyrimidine-Based Inhibitor Dsm1
 pdb|3I68|A Chain A, Plasmodium Falciparum Dihydroorotate Dehydrogenase Bound
          With Triazolopyrimidine-Based Inhibitor Dsm2
 pdb|3I6R|A Chain A, Plasmodium Falciparum Dihydroorotate Dehydrogenase Bound
          With Triazolopyrimidine-Based Inhibitor Dsm74
 pdb|3O8A|A Chain A, Crystal Structure Of Plasmodium Falciparum
          Dihydroorotate Dehydrogenase Bound With Novel Inhibitor
          Genz667348
          Length = 415

 Score = 29.3 bits (64), Expect = 0.57,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 5/56 (8%)

Query: 41 LLPILFKF-----DAETAHNIAIWTAKYKLLPKSVYEDPPQLASQVWNLKFPNPLA 91
          L  I  KF     D E  H++ +   KY +LP     D     + + +L F NP  
Sbjct: 43 LYDIFLKFCLKYIDGEICHDLFLLLGKYNILPYDTSNDSIYACTNIKHLDFINPFG 98


>pdb|2DZY|A Chain A, Crystal Structure Of N392a Mutant Of Yeast Bleomycin
           Hydrolase
          Length = 457

 Score = 25.4 bits (54), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 62  KYKLLPKSVYEDPP--QLASQVWNLKFPNPLAELRTQKPTEVSIQGPPTVSISGVEPQVP 119
           KY L+PK +Y D P    AS+ WN      L E      T +  +      I  +  Q+ 
Sbjct: 158 KYGLIPKDLYGDLPYSTTASRKWNSLLTTKLREFAETLRTALKERSADDSIIVTLREQMQ 217

Query: 120 KPV 122
           + +
Sbjct: 218 REI 220


>pdb|2P55|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
           Kinase Kinase 1 (Mek1) In A Complex With Ligand And
           Mgatp
 pdb|3EQB|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
           Kinase Kinase 1 (Mek1) In A Complex With Ligand And
           Mgatp
          Length = 333

 Score = 25.4 bits (54), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 14/40 (35%), Positives = 24/40 (60%)

Query: 61  AKYKLLPKSVYEDPPQLASQVWNLKFPNPLAELRTQKPTE 100
           A ++LL   V E PP+L S V++L+F + + +   + P E
Sbjct: 249 AIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAE 288


>pdb|2E00|A Chain A, Crystal Structure Of N392l Mutant Of Yeast Bleomycin
           Hydrolase
          Length = 457

 Score = 25.4 bits (54), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 62  KYKLLPKSVYEDPP--QLASQVWNLKFPNPLAELRTQKPTEVSIQGPPTVSISGVEPQVP 119
           KY L+PK +Y D P    AS+ WN      L E      T +  +      I  +  Q+ 
Sbjct: 158 KYGLIPKDLYGDLPYSTTASRKWNSLLTTKLREFAETLRTALKERSADDSIIVTLREQMQ 217

Query: 120 KPV 122
           + +
Sbjct: 218 REI 220


>pdb|3ORN|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In
           Complex With Ch4987655 And Mgamp-Pnp
 pdb|3OS3|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In
           Complex With Ch4858061 And Mgatp
          Length = 307

 Score = 25.4 bits (54), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 14/40 (35%), Positives = 24/40 (60%)

Query: 61  AKYKLLPKSVYEDPPQLASQVWNLKFPNPLAELRTQKPTE 100
           A ++LL   V E PP+L S V++L+F + + +   + P E
Sbjct: 217 AIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAE 256


>pdb|2E02|A Chain A, Crystal Structure Of H369l Mutant Of Yeast Bleomycin
           Hydrolase
          Length = 457

 Score = 25.4 bits (54), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 62  KYKLLPKSVYEDPP--QLASQVWNLKFPNPLAELRTQKPTEVSIQGPPTVSISGVEPQVP 119
           KY L+PK +Y D P    AS+ WN      L E      T +  +      I  +  Q+ 
Sbjct: 158 KYGLIPKDLYGDLPYSTTASRKWNSLLTTKLREFAETLRTALKERSADDSIIVTLREQMQ 217

Query: 120 KPV 122
           + +
Sbjct: 218 REI 220


>pdb|2DZZ|A Chain A, Crystal Structure Of N392v Mutant Of Yeast Bleomycin
           Hydrolase
          Length = 457

 Score = 25.4 bits (54), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 62  KYKLLPKSVYEDPP--QLASQVWNLKFPNPLAELRTQKPTEVSIQGPPTVSISGVEPQVP 119
           KY L+PK +Y D P    AS+ WN      L E      T +  +      I  +  Q+ 
Sbjct: 158 KYGLIPKDLYGDLPYSTTASRKWNSLLTTKLREFAETLRTALKERSADDSIIVTLREQMQ 217

Query: 120 KPV 122
           + +
Sbjct: 218 REI 220


>pdb|1S9J|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
           Kinase Kinase 1 (Mek1) In A Complex With Ligand And
           Mgatp
 pdb|3DY7|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
           Kinase Kinase 1 (Mek1) In A Complex With Ligand And
           Mgatp
 pdb|3E8N|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
           Kinase Kinase 1 (Mek1) Complexed With A Potent Inhibitor
           Rdea119 And Mgatp
 pdb|3V01|A Chain A, Discovery Of Novel Allosteric Mek Inhibitors Possessing
           Classical And Non-Classical Bidentate Ser212
           Interactions.
 pdb|3V04|A Chain A, Discovery Of Novel Allosteric Mek Inhibitors Possessing
           Classical And Non-Classical Bidentate Ser212
           Interactions
          Length = 341

 Score = 25.4 bits (54), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 14/40 (35%), Positives = 24/40 (60%)

Query: 61  AKYKLLPKSVYEDPPQLASQVWNLKFPNPLAELRTQKPTE 100
           A ++LL   V E PP+L S V++L+F + + +   + P E
Sbjct: 249 AIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAE 288


>pdb|3GCB|A Chain A, Gal6 (Yeast Bleomycin Hydrolase) Mutant C73aDELTAK454
          Length = 470

 Score = 25.4 bits (54), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 62  KYKLLPKSVYEDPP--QLASQVWNLKFPNPLAELRTQKPTEVSIQGPPTVSISGVEPQVP 119
           KY L+PK +Y D P    AS+ WN      L E      T +  +      I  +  Q+ 
Sbjct: 171 KYGLIPKDLYGDLPYSTTASRKWNSLLTTKLREFAETLRTALKERSADDSIIVTLREQMQ 230

Query: 120 KPV 122
           + +
Sbjct: 231 REI 233


>pdb|2E01|A Chain A, Crystal Structure Of H369a Mutant Of Yeast Bleomycin
           Hydrolase
          Length = 457

 Score = 25.4 bits (54), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 62  KYKLLPKSVYEDPP--QLASQVWNLKFPNPLAELRTQKPTEVSIQGPPTVSISGVEPQVP 119
           KY L+PK +Y D P    AS+ WN      L E      T +  +      I  +  Q+ 
Sbjct: 158 KYGLIPKDLYGDLPYSTTASRKWNSLLTTKLREFAETLRTALKERSADDSIIVTLREQMQ 217

Query: 120 KPV 122
           + +
Sbjct: 218 REI 220


>pdb|1A6R|A Chain A, Gal6 (Yeast Bleomycin Hydrolase) Mutant C73a
          Length = 471

 Score = 25.4 bits (54), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 62  KYKLLPKSVYEDPP--QLASQVWNLKFPNPLAELRTQKPTEVSIQGPPTVSISGVEPQVP 119
           KY L+PK +Y D P    AS+ WN      L E      T +  +      I  +  Q+ 
Sbjct: 171 KYGLIPKDLYGDLPYSTTASRKWNSLLTTKLREFAETLRTALKERSADDSIIVTLREQMQ 230

Query: 120 KPV 122
           + +
Sbjct: 231 REI 233


>pdb|3MBL|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein
           Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgadp
 pdb|3PP1|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein
           Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgatp
          Length = 328

 Score = 25.4 bits (54), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 14/40 (35%), Positives = 24/40 (60%)

Query: 61  AKYKLLPKSVYEDPPQLASQVWNLKFPNPLAELRTQKPTE 100
           A ++LL   V E PP+L S V++L+F + + +   + P E
Sbjct: 249 AIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAE 288


>pdb|3DV3|A Chain A, Mek1 With Pf-04622664 Bound
          Length = 322

 Score = 25.4 bits (54), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 14/40 (35%), Positives = 24/40 (60%)

Query: 61  AKYKLLPKSVYEDPPQLASQVWNLKFPNPLAELRTQKPTE 100
           A ++LL   V E PP+L S V++L+F + + +   + P E
Sbjct: 249 AIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAE 288


>pdb|4AN2|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
           Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
           Analogs.
 pdb|4AN3|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
           Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
           Analogs.
 pdb|4AN9|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
           Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
           Analogs.
 pdb|4ANB|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
           Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
           Analogs
          Length = 301

 Score = 25.4 bits (54), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 14/40 (35%), Positives = 24/40 (60%)

Query: 61  AKYKLLPKSVYEDPPQLASQVWNLKFPNPLAELRTQKPTE 100
           A ++LL   V E PP+L S V++L+F + + +   + P E
Sbjct: 210 AIFELLDYIVNEPPPKLPSAVFSLEFQDFVNKCLIKNPAE 249


>pdb|2E03|A Chain A, Crystal Structure Of Nq67e Mutant Of Yeast Bleomycin
           Hydrolase
          Length = 457

 Score = 25.4 bits (54), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 62  KYKLLPKSVYEDPP--QLASQVWNLKFPNPLAELRTQKPTEVSIQGPPTVSISGVEPQVP 119
           KY L+PK +Y D P    AS+ WN      L E      T +  +      I  +  Q+ 
Sbjct: 158 KYGLIPKDLYGDLPYSTTASRKWNSLLTTKLREFAETLRTALKERSADDSIIVTLREQMQ 217

Query: 120 KPV 122
           + +
Sbjct: 218 REI 220


>pdb|1GCB|A Chain A, Gal6, Yeast Bleomycin Hydrolase Dna-Binding Protease
           (Thiol)
          Length = 454

 Score = 25.4 bits (54), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 62  KYKLLPKSVYEDPP--QLASQVWNLKFPNPLAELRTQKPTEVSIQGPPTVSISGVEPQVP 119
           KY L+PK +Y D P    AS+ WN      L E      T +  +      I  +  Q+ 
Sbjct: 154 KYGLIPKDLYGDLPYSTTASRKWNSLLTTKLREFAETLRTALKERSADDSIIVTLREQMQ 213

Query: 120 KPV 122
           + +
Sbjct: 214 REI 216


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.132    0.389 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,261,767
Number of Sequences: 62578
Number of extensions: 104888
Number of successful extensions: 219
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 200
Number of HSP's gapped (non-prelim): 33
length of query: 122
length of database: 14,973,337
effective HSP length: 84
effective length of query: 38
effective length of database: 9,716,785
effective search space: 369237830
effective search space used: 369237830
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)