BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5901
(122 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P32748|PYRD_DROME Dihydroorotate dehydrogenase (quinone), mitochondrial OS=Drosophila
melanogaster GN=Dhod PE=2 SV=2
Length = 405
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%)
Query: 9 KLVSLAAVSSGSFALFSGINIYQNNENYYNNVLLPILFKFDAETAHNIAIWTAKYKLLPK 68
+L SL V+ G AL +GI Y+N + + ++P + AE +H +A+ KY+L P
Sbjct: 18 RLRSLGIVTVGGAALVAGITAYKNQDQLFRTFVMPAVRLLPAEASHQLAVLACKYRLCPV 77
Query: 69 SVYEDPPQLASQVWNLKFPNPLA 91
S Y D L + + NP+
Sbjct: 78 SQYHDDQNLHTSFFGRMLSNPIG 100
>sp|B9JR03|PYRD_AGRVS Dihydroorotate dehydrogenase (quinone) OS=Agrobacterium vitis
(strain S4 / ATCC BAA-846) GN=pyrD PE=3 SV=1
Length = 363
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 30/49 (61%)
Query: 43 PILFKFDAETAHNIAIWTAKYKLLPKSVYEDPPQLASQVWNLKFPNPLA 91
P LF FDAETAH ++I K L+PK D P+LA V L FPNPL
Sbjct: 11 PGLFLFDAETAHGLSIAGLKTSLMPKCHLPDDPRLAQTVAGLHFPNPLG 59
>sp|P32747|PYRD_SCHPO Dihydroorotate dehydrogenase (quinone), mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=ura3 PE=1 SV=1
Length = 443
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 19 GSFALFSGINIYQNNENY---YNNVLLPILFKFDA-ETAHNIAIWTAKYKLLPKSVYEDP 74
GSF +G+ IY ++ + + +P+ F E +H +AI A + + PK D
Sbjct: 45 GSFT--AGVAIYDMSDVRSFIHGRIEMPLFHAFTTPEFSHRVAILAASWGITPKDRVADD 102
Query: 75 PQLASQVWNLKFPNPLA 91
P LA +VW KF NP+
Sbjct: 103 PSLAVEVWGKKFCNPIG 119
>sp|Q5E9W3|PYRD_BOVIN Dihydroorotate dehydrogenase (quinone), mitochondrial OS=Bos
taurus GN=DHODH PE=1 SV=1
Length = 395
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 6 LLKKLVSLAAVSSGSFALFSGINIYQNNENYYNNVLLPILFKF-DAETAHNIAIWTAKYK 64
L K+ + G LF+ +E++Y +L+P L + D ETAH +A+
Sbjct: 6 LKKRAQDAMVILGGGGLLFASYLTATGDEHFYAELLMPSLQRLLDPETAHRLAVRFTSLG 65
Query: 65 LLPKSVYEDPPQLASQVWNLKFPNPLA 91
LLP++ ++D L +V KF NP+
Sbjct: 66 LLPRTTFQDSDMLEVRVLGHKFRNPVG 92
>sp|O35435|PYRD_MOUSE Dihydroorotate dehydrogenase (quinone), mitochondrial OS=Mus
musculus GN=Dhodh PE=2 SV=2
Length = 395
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 6 LLKKLVSLAAVSSGSFALFSGINIYQNNENYYNNVLLPILFKF-DAETAHNIAIWTAKYK 64
L K+ + A + G LF+ ++++Y L+P L + D E+AH +A+
Sbjct: 6 LRKRALDAAIILGGGGLLFTSYLTATGDDHFYAEYLMPALQRLLDPESAHRLAVRVISLG 65
Query: 65 LLPKSVYEDPPQLASQVWNLKFPNPLA 91
LLP++ ++D L +V KF NP+
Sbjct: 66 LLPRATFQDSNMLEVRVLGHKFRNPVG 92
>sp|Q63707|PYRD_RAT Dihydroorotate dehydrogenase (quinone), mitochondrial OS=Rattus
norvegicus GN=Dhodh PE=1 SV=1
Length = 395
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 6 LLKKLVSLAAVSSGSFALFSGINIYQNNENYYNNVLLPILFKF-DAETAHNIAIWTAKYK 64
L K+ + + G LF+ ++++Y L+P L + D E+AH +A+
Sbjct: 6 LRKRALDAVIILGGGGLLFTSYLTATGDDHFYAEYLMPGLQRLLDPESAHRLAVRVTSLG 65
Query: 65 LLPKSVYEDPPQLASQVWNLKFPNPLA 91
LLP++ ++D L +V KF NP+
Sbjct: 66 LLPRATFQDSDMLEVKVLGHKFRNPVG 92
>sp|Q8G2K8|PYRD_BRUSU Dihydroorotate dehydrogenase (quinone) OS=Brucella suis biovar 1
(strain 1330) GN=pyrD PE=3 SV=1
Length = 364
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 45 LFKFDAETAHNIAIWTAKYKLLPKSVYEDPPQLASQVWNLKFPNPLA 91
LF FDAE AH ++I K ++ EDP L+ +V LKFPNPL
Sbjct: 13 LFTFDAEQAHGLSITGLKTGIVTCRTPEDPA-LSVKVAGLKFPNPLG 58
>sp|B0CJU0|PYRD_BRUSI Dihydroorotate dehydrogenase (quinone) OS=Brucella suis (strain
ATCC 23445 / NCTC 10510) GN=pyrD PE=3 SV=1
Length = 364
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 45 LFKFDAETAHNIAIWTAKYKLLPKSVYEDPPQLASQVWNLKFPNPLA 91
LF FDAE AH ++I K ++ EDP L+ +V LKFPNPL
Sbjct: 13 LFTFDAEQAHGLSITGLKTGIVTCRTPEDPA-LSVKVAGLKFPNPLG 58
>sp|A5VNQ1|PYRD_BRUO2 Dihydroorotate dehydrogenase (quinone) OS=Brucella ovis (strain
ATCC 25840 / 63/290 / NCTC 10512) GN=pyrD PE=3 SV=1
Length = 364
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 45 LFKFDAETAHNIAIWTAKYKLLPKSVYEDPPQLASQVWNLKFPNPLA 91
LF FDAE AH ++I K ++ EDP L+ +V LKFPNPL
Sbjct: 13 LFTFDAEQAHGLSITGLKTGIVTCRTPEDPA-LSVKVAGLKFPNPLG 58
>sp|A9M7Z9|PYRD_BRUC2 Dihydroorotate dehydrogenase (quinone) OS=Brucella canis (strain
ATCC 23365 / NCTC 10854) GN=pyrD PE=3 SV=1
Length = 364
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 45 LFKFDAETAHNIAIWTAKYKLLPKSVYEDPPQLASQVWNLKFPNPLA 91
LF FDAE AH ++I K ++ EDP L+ +V LKFPNPL
Sbjct: 13 LFTFDAEQAHGLSITGLKTGIVTCRTPEDPA-LSVKVAGLKFPNPLG 58
>sp|Q8YFB1|PYRD_BRUME Dihydroorotate dehydrogenase (quinone) OS=Brucella melitensis
biotype 1 (strain 16M / ATCC 23456 / NCTC 10094)
GN=pyrD PE=3 SV=1
Length = 364
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 45 LFKFDAETAHNIAIWTAKYKLLPKSVYEDPPQLASQVWNLKFPNPLA 91
LF FDAE AH ++I K ++ EDP L+ +V LKFPNPL
Sbjct: 13 LFTFDAEQAHGLSITGLKTGIVTCRTPEDPA-LSVKVAGLKFPNPLG 58
>sp|C0RH28|PYRD_BRUMB Dihydroorotate dehydrogenase (quinone) OS=Brucella melitensis
biotype 2 (strain ATCC 23457) GN=pyrD PE=3 SV=1
Length = 364
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 45 LFKFDAETAHNIAIWTAKYKLLPKSVYEDPPQLASQVWNLKFPNPLA 91
LF FDAE AH ++I K ++ EDP L+ +V LKFPNPL
Sbjct: 13 LFTFDAEQAHGLSITGLKTGIVTCRTPEDPA-LSVKVAGLKFPNPLG 58
>sp|Q57F47|PYRD_BRUAB Dihydroorotate dehydrogenase (quinone) OS=Brucella abortus biovar
1 (strain 9-941) GN=pyrD PE=3 SV=1
Length = 364
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 45 LFKFDAETAHNIAIWTAKYKLLPKSVYEDPPQLASQVWNLKFPNPLA 91
LF FDAE AH ++I K ++ EDP L+ +V LKFPNPL
Sbjct: 13 LFTFDAEQAHGLSITGLKTGIVTCRTPEDPA-LSVKVAGLKFPNPLG 58
>sp|Q2YPG3|PYRD_BRUA2 Dihydroorotate dehydrogenase (quinone) OS=Brucella abortus
(strain 2308) GN=pyrD PE=3 SV=1
Length = 364
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 45 LFKFDAETAHNIAIWTAKYKLLPKSVYEDPPQLASQVWNLKFPNPLA 91
LF FDAE AH ++I K ++ EDP L+ +V LKFPNPL
Sbjct: 13 LFTFDAEQAHGLSITGLKTGIVTCRTPEDPA-LSVKVAGLKFPNPLG 58
>sp|B2S953|PYRD_BRUA1 Dihydroorotate dehydrogenase (quinone) OS=Brucella abortus
(strain S19) GN=pyrD PE=3 SV=1
Length = 364
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 45 LFKFDAETAHNIAIWTAKYKLLPKSVYEDPPQLASQVWNLKFPNPLA 91
LF FDAE AH ++I K ++ EDP L+ +V LKFPNPL
Sbjct: 13 LFTFDAEQAHGLSITGLKTGIVTCRTPEDPA-LSVKVAGLKFPNPLG 58
>sp|Q13D13|PYRD_RHOPS Dihydroorotate dehydrogenase (quinone) OS=Rhodopseudomonas
palustris (strain BisB5) GN=pyrD PE=3 SV=1
Length = 364
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 37 YNNVLLPILFKFDAETAHNIAIWTAKYKLLPKSV-YEDPPQLASQVWNLKFPNPLA 91
++ LP+L FDAE AH +AI +LLP+ D P+LA + + L FPNP+
Sbjct: 5 FDAFSLPLLRLFDAEDAHRLAIQ--GLRLLPQVKPRPDDPKLAVRAFGLNFPNPVG 58
>sp|A7IBC2|PYRD_XANP2 Dihydroorotate dehydrogenase (quinone) OS=Xanthobacter
autotrophicus (strain ATCC BAA-1158 / Py2) GN=pyrD PE=3
SV=1
Length = 357
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 39 NVLLPILFKFDA-ETAHNIAIWTAKYKLLPK-SVYEDPPQLASQVWNLKFPNPLA 91
VL P LF+F E AH+++I K L+P S D P LA++VW L FPNP+
Sbjct: 5 GVLKP-LFRFMTPEQAHHLSIRVLKSGLVPDLSGGPDDPVLATRVWGLDFPNPVG 58
>sp|B3DX48|PYRD_METI4 Dihydroorotate dehydrogenase (quinone) OS=Methylacidiphilum
infernorum (isolate V4) GN=pyrD PE=3 SV=1
Length = 348
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 37 YNNVLLPILFKFDAETAHNIAIWTAKYKLLP------KSVYEDPPQLASQVWNLKFPNPL 90
Y + L PILF + E AHN+ + + P S +D P L ++W ++FPNP+
Sbjct: 3 YKSFLRPILFSLEPEYAHNLCLGLLSHPFYPFFHKLLASFQKDLPLLPKELWGMQFPNPV 62
Query: 91 A 91
Sbjct: 63 G 63
>sp|Q5R6X6|PYRD_PONAB Dihydroorotate dehydrogenase (quinone), mitochondrial OS=Pongo
abelii GN=DHODH PE=2 SV=1
Length = 395
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 6 LLKKLVSLAAVSSGSFALFSGINIYQNNENYYNNVLLPILFKF-DAETAHNIAIWTAKYK 64
L K+ + G LF+ + +E +Y L+P L D E+AH +A+
Sbjct: 6 LKKRAQDAVVILGGGGLLFASYLMATGDERFYAEHLMPTLQGLLDPESAHRLAVRFTSLG 65
Query: 65 LLPKSVYEDPPQLASQVWNLKFPNPLA 91
LLP++ ++D L +V KF NP+
Sbjct: 66 LLPRARFQDSDMLEVRVLGHKFRNPVG 92
>sp|Q02127|PYRD_HUMAN Dihydroorotate dehydrogenase (quinone), mitochondrial OS=Homo
sapiens GN=DHODH PE=1 SV=3
Length = 395
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 6 LLKKLVSLAAVSSGSFALFSGINIYQNNENYYNNVLLPILFKF-DAETAHNIAIWTAKYK 64
L K+ + G LF+ + +E +Y L+P L D E+AH +A+
Sbjct: 6 LKKRAQDAVIILGGGGLLFASYLMATGDERFYAEHLMPTLQGLLDPESAHRLAVRFTSLG 65
Query: 65 LLPKSVYEDPPQLASQVWNLKFPNPLA 91
LLP++ ++D L +V KF NP+
Sbjct: 66 LLPRARFQDSDMLEVRVLGHKFRNPVG 92
>sp|A6WVY1|PYRD_OCHA4 Dihydroorotate dehydrogenase (quinone) OS=Ochrobactrum anthropi
(strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=pyrD
PE=3 SV=1
Length = 364
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 45 LFKFDAETAHNIAIWTAKYKLLPKSVYEDPPQLASQVWNLKFPNPLA 91
LF FDAE AH ++I K L+ DP L+ +V L+FPNPL
Sbjct: 13 LFAFDAEQAHGLSIAGLKTGLVTCGAPNDPA-LSVKVAGLQFPNPLG 58
>sp|A6U5U0|PYRD_SINMW Dihydroorotate dehydrogenase (quinone) OS=Sinorhizobium medicae
(strain WSM419) GN=pyrD PE=3 SV=1
Length = 362
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 24/47 (51%)
Query: 45 LFKFDAETAHNIAIWTAKYKLLPKSVYEDPPQLASQVWNLKFPNPLA 91
LF FD E AH ++I K L+P P+L V L FPNP+
Sbjct: 13 LFLFDPEAAHGLSITALKTGLVPSCAAPADPRLQQSVAGLAFPNPVG 59
>sp|B5ZPH6|PYRD_RHILW Dihydroorotate dehydrogenase (quinone) OS=Rhizobium leguminosarum
bv. trifolii (strain WSM2304) GN=pyrD PE=3 SV=1
Length = 362
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 24/47 (51%)
Query: 45 LFKFDAETAHNIAIWTAKYKLLPKSVYEDPPQLASQVWNLKFPNPLA 91
LF FD ETAH ++I K L+P P+L V L F NPL
Sbjct: 13 LFLFDPETAHGMSIAALKSGLVPACQITPDPRLCQTVAGLTFENPLG 59
>sp|Q1MLT8|PYRD_RHIL3 Dihydroorotate dehydrogenase (quinone) OS=Rhizobium leguminosarum
bv. viciae (strain 3841) GN=pyrD PE=3 SV=1
Length = 362
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 24/47 (51%)
Query: 45 LFKFDAETAHNIAIWTAKYKLLPKSVYEDPPQLASQVWNLKFPNPLA 91
LF FD ETAH ++I K L+P P+L V L F NPL
Sbjct: 13 LFLFDPETAHGMSIAALKSGLVPACQLTPDPRLRQTVAGLTFENPLG 59
>sp|B3PNN8|PYRD_RHIE6 Dihydroorotate dehydrogenase (quinone) OS=Rhizobium etli (strain
CIAT 652) GN=pyrD PE=3 SV=1
Length = 362
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 24/47 (51%)
Query: 45 LFKFDAETAHNIAIWTAKYKLLPKSVYEDPPQLASQVWNLKFPNPLA 91
LF FD ETAH ++I K L+P P+L V L F NPL
Sbjct: 13 LFLFDPETAHGMSIAALKSGLVPACQITPDPRLRQTVAGLTFENPLG 59
>sp|A8HZX8|PYRD_AZOC5 Dihydroorotate dehydrogenase (quinone) OS=Azorhizobium
caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571)
GN=pyrD PE=3 SV=1
Length = 356
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 43 PILFKFDAETAHNIAIWTAKYKLLPKSVYEDPPQLASQVWNLKFPNPLA 91
P L F E AH ++I K L+P P L ++VWN+ FPNP+
Sbjct: 9 PFLPLFTPEQAHGLSIRALKKGLVPADRSPADPVLRTRVWNIDFPNPVG 57
>sp|P32746|PYRD_ARATH Dihydroorotate dehydrogenase (quinone), mitochondrial
OS=Arabidopsis thaliana GN=PYRD PE=1 SV=2
Length = 460
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 26/52 (50%)
Query: 40 VLLPILFKFDAETAHNIAIWTAKYKLLPKSVYEDPPQLASQVWNLKFPNPLA 91
V+ P DAE AH +A+ A +P+ DP L +VW KF NP+
Sbjct: 87 VVNPFFALLDAEFAHKLAVSAAARGWVPREKRPDPAILGLEVWGRKFSNPIG 138
>sp|B9J901|PYRD_AGRRK Dihydroorotate dehydrogenase (quinone) OS=Agrobacterium
radiobacter (strain K84 / ATCC BAA-868) GN=pyrD PE=3
SV=1
Length = 362
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 24/47 (51%)
Query: 45 LFKFDAETAHNIAIWTAKYKLLPKSVYEDPPQLASQVWNLKFPNPLA 91
LF D ETAH ++I K L+P + P+L V L F NPL
Sbjct: 13 LFLLDPETAHGMSIAALKSGLVPTCRVSNDPRLRQIVAGLDFANPLG 59
>sp|Q609J2|PYRD_METCA Dihydroorotate dehydrogenase (quinone) OS=Methylococcus
capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath)
GN=pyrD PE=3 SV=1
Length = 340
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 37 YNNVLLPILFKFDAETAHNIAIWTAKY--KLLPKS-VYEDPPQLASQVWNLKFPNPLA 91
Y N+L P+LF+ D ETAH +++ + KL P + + + P V L+FPNP+
Sbjct: 3 YENLLRPLLFRLDPETAHELSLSALRLAAKLGPANPLKQSLPTSPRTVMGLEFPNPIG 60
>sp|Q75CE1|PYRD_ASHGO Dihydroorotate dehydrogenase (quinone), mitochondrial OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=URA9 PE=3 SV=1
Length = 444
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 8 KKLVSLAAVSSGSFALFSGINIYQNNENYYNNVLLPILFKFDAETAHNIAIWTAKYKLLP 67
+ ++ A+V G+ A F +N Y + L+ ++ DAE H + IW KY L P
Sbjct: 38 RYIIGTASVLVGAMAGFYIMNSRSAIHEYVSCPLVRLVTP-DAEDGHKLGIWFLKYGLAP 96
Query: 68 KSVYE-DPPQLASQVWNLKFPNPLA 91
K +++ D P L +V+ NP+
Sbjct: 97 KLMFDKDDPVLKVEVFGKTMSNPIG 121
>sp|P28294|PYRD_AGRAE Dihydroorotate dehydrogenase (quinone), mitochondrial OS=Agrocybe
aegerita GN=URA1 PE=3 SV=1
Length = 328
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 45 LFKFDAETAHNIAIWTAKYKLLPKSVYEDPPQLASQVWNLKFPNPLA 91
LF FDAE AH ++I K L+ S D L+ +V L+FPNPL
Sbjct: 13 LFAFDAEQAHGLSIAGLKTGLVTGSAPNDLA-LSVKVAGLQFPNPLG 58
>sp|Q2KCS8|PYRD_RHIEC Dihydroorotate dehydrogenase (quinone) OS=Rhizobium etli (strain
CFN 42 / ATCC 51251) GN=pyrD PE=3 SV=1
Length = 362
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 24/47 (51%)
Query: 45 LFKFDAETAHNIAIWTAKYKLLPKSVYEDPPQLASQVWNLKFPNPLA 91
LF FD ETAH ++I K L+P P+L + L F NPL
Sbjct: 13 LFLFDPETAHGMSIAALKSGLVPACQIAPDPRLRQTIAGLTFENPLG 59
>sp|Q89VA7|PYRD_BRAJA Dihydroorotate dehydrogenase (quinone) OS=Bradyrhizobium
japonicum (strain USDA 110) GN=pyrD PE=3 SV=1
Length = 365
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 37 YNNVLLPILFKFDAETAHNIAIWTAKYKLLPKSVYEDPPQLASQVWNLKFPNPLA 91
++ + LP+L D E AH +AI ++ L P D P+LA + + L FPNP+
Sbjct: 5 FDALSLPVLRWLDPEDAHRLAIQGLRF-LPPVKPRADDPKLAVRAFGLNFPNPIG 58
>sp|B8ID11|PYRD_METNO Dihydroorotate dehydrogenase (quinone) OS=Methylobacterium nodulans
(strain ORS2060 / LMG 21967) GN=pyrD PE=3 SV=1
Length = 359
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 43 PILFKFDAETAHNIAIWTAKYKLLPKSV-YEDPPQLASQVWNLKFPNPLA-----ELRTQ 96
P+L DAETAH + I LLP D P+LA V FPNP+ + +
Sbjct: 11 PVLHALDAETAHRLTIRA--LSLLPAGAPPADDPRLAVSVLGRHFPNPVGLAAGFDKGAE 68
Query: 97 KPTEVSIQGPPTVSISGVEPQVPKP 121
P + G V + GV P+ P+P
Sbjct: 69 VPDALLSLGFGFVEVGGVVPR-PQP 92
>sp|A4Z2G7|PYRD_BRASO Dihydroorotate dehydrogenase (quinone) OS=Bradyrhizobium sp.
(strain ORS278) GN=pyrD PE=3 SV=1
Length = 364
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 37 YNNVLLPILFKFDAETAHNIAIWTAKYKLLPKSV-YEDPPQLASQVWNLKFPNPLA 91
++ + LP+L DAE AH +AI KLLP D +LA + + L FPNP+
Sbjct: 5 FDQLSLPLLRWLDAEDAHRLAIQ--GLKLLPAVKPRADDAKLAVRAFGLNFPNPVG 58
>sp|A9CK85|PYRD_AGRT5 Dihydroorotate dehydrogenase (quinone) OS=Agrobacterium
tumefaciens (strain C58 / ATCC 33970) GN=pyrD PE=3 SV=1
Length = 363
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%)
Query: 35 NYYNNVLLPILFKFDAETAHNIAIWTAKYKLLPKSVYEDPPQLASQVWNLKFPNPLA 91
+++V LF D E AH +++ K LP + P+L V L FPNPL
Sbjct: 3 GLFSSVGRKGLFLIDPEKAHGLSVAALKSGFLPTCMVPHDPRLQQTVAGLVFPNPLG 59
>sp|Q92S77|PYRD_RHIME Dihydroorotate dehydrogenase (quinone) OS=Rhizobium meliloti
(strain 1021) GN=pyrD PE=3 SV=1
Length = 362
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 45 LFKFDAETAHNIAIWTAKYKLLPKSVYEDPPQLASQVWNLKFPNPLA 91
LF FD E AH ++I K L+P P+L V L F NP+
Sbjct: 13 LFLFDPEAAHGLSIKALKSGLVPSCAAPADPRLGQTVAGLVFSNPIG 59
>sp|Q6V3W9|PYRD_LACK1 Dihydroorotate dehydrogenase (quinone), mitochondrial OS=Lachancea
kluyveri (strain ATCC 58438 / CBS 3082 / CCRC 21498 /
NBRC 1685 / JCM 7257 / NCYC 543 / NRRL Y-12651) GN=URA9
PE=1 SV=1
Length = 446
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 6/94 (6%)
Query: 1 MKKPTLLKKLVSLAAVSSGSFALFSGINIYQNNENYYNNVLLPILFKF--DAETAHNIAI 58
+K K ++ A + G+FA G ++ + +L PIL DAE H I
Sbjct: 32 LKSSVGAKAILYTAGILGGAFA---GYYLFNARSAIHEYLLCPILRLATPDAENGHRAGI 88
Query: 59 WTAKYKLLPKSVY-EDPPQLASQVWNLKFPNPLA 91
+ K+ L PK ++ ED L V+ K NP+
Sbjct: 89 FCLKWGLAPKLLFDEDDEVLHVNVFGTKMTNPIG 122
>sp|A5EA61|PYRD_BRASB Dihydroorotate dehydrogenase (quinone) OS=Bradyrhizobium sp.
(strain BTAi1 / ATCC BAA-1182) GN=pyrD PE=3 SV=1
Length = 364
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 37 YNNVLLPILFKFDAETAHNIAIWTAKYKLLPK-SVYEDPPQLASQVWNLKFPNPLA 91
++ + LP+L DAE AH +AI KLLP D +LA + + L FPNP+
Sbjct: 5 FDQLSLPLLRWLDAEDAHRLAIQ--GLKLLPAIKPRPDDAKLAVRAFGLNFPNPVG 58
>sp|Q6CTX8|PYRD2_KLULA Dihydroorotate dehydrogenase (quinone), mitochondrial
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=URA9 PE=3
SV=1
Length = 445
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 11/92 (11%)
Query: 4 PTLLKKLVSLAAVSSGSFALFSGINIYQNNEN-YYNNVLLPILFKF--DAETAHNIAIWT 60
P LLK V +A GSFA F + N+ + ++ VL P+L DAE H + IW
Sbjct: 37 PKLLKYTVGIAI---GSFAGF----YFSNSRSAFHEYVLCPMLRLVTPDAEDGHKLGIWF 89
Query: 61 AKYKLLPKSVYE-DPPQLASQVWNLKFPNPLA 91
K L P+ ++ D L ++ K NP+
Sbjct: 90 LKNGLAPRLWFDNDDKVLNVNIFGKKLTNPIG 121
>sp|Q2IR55|PYRD_RHOP2 Dihydroorotate dehydrogenase (quinone) OS=Rhodopseudomonas
palustris (strain HaA2) GN=pyrD PE=3 SV=1
Length = 364
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 37 YNNVLLPILFKFDAETAHNIAIWTAKYKLLPKSV-YEDPPQLASQVWNLKFPNPLA 91
++ LP+L DAE AH +AI +LLP+ D +LA + + L FPNP+
Sbjct: 5 FDAFSLPLLRLLDAEDAHRLAIQ--GLRLLPQVKPRPDDSKLAVRAFGLNFPNPVG 58
>sp|A7HQ77|PYRD_PARL1 Dihydroorotate dehydrogenase (quinone) OS=Parvibaculum
lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966)
GN=pyrD PE=3 SV=1
Length = 348
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 43 PILFKFDAETAHNIAIWTAKYKLLPKSVYEDPPQLASQVWNLKFPNPLA 91
P++ D ETAH + + + L P DP LA ++ L F NPL
Sbjct: 9 PLMSLMDPETAHGLTLRALRLGLGPTRRAPDPVSLAIDLFGLHFENPLG 57
>sp|Q11M76|PYRD_MESSB Dihydroorotate dehydrogenase (quinone) OS=Mesorhizobium sp.
(strain BNC1) GN=pyrD PE=3 SV=1
Length = 363
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%)
Query: 43 PILFKFDAETAHNIAIWTAKYKLLPKSVYEDPPQLASQVWNLKFPNPLA 91
P+LF FD E AH ++I K + S +LA V L FPNP+
Sbjct: 11 PVLFAFDPERAHELSIAALKTGIPFCSGGVQNSKLAVSVAGLNFPNPIG 59
>sp|C3MFT0|PYRD_RHISN Dihydroorotate dehydrogenase (quinone) OS=Rhizobium sp. (strain
NGR234) GN=pyrD PE=3 SV=1
Length = 362
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 45 LFKFDAETAHNIAIWTAKYKLLPKSVYEDPPQLASQVWNLKFPNPLA 91
LF D ETAH ++I K ++P +L + L FPNPL
Sbjct: 13 LFLLDPETAHGVSIKALKSGVVPSCAAPADTRLEQVIAGLNFPNPLG 59
>sp|B9L9P6|PYRD_NAUPA Dihydroorotate dehydrogenase (quinone) OS=Nautilia profundicola
(strain ATCC BAA-1463 / DSM 18972 / AmH) GN=pyrD PE=3
SV=1
Length = 359
Score = 35.4 bits (80), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 8/61 (13%)
Query: 39 NVLLPILFKFDAETAHNI---AIWTAK-----YKLLPKSVYEDPPQLASQVWNLKFPNPL 90
N++ P+++K D E AH++ A+ TA+ + L K+ + D L ++W+L+F NP+
Sbjct: 5 NMVKPLIYKTDPELAHDLVDLAMRTARRCPLFFNPLVKANFVDDVMLHQKIWDLEFKNPV 64
Query: 91 A 91
Sbjct: 65 G 65
>sp|Q98B89|PYRD_RHILO Dihydroorotate dehydrogenase (quinone) OS=Rhizobium loti (strain
MAFF303099) GN=pyrD PE=3 SV=1
Length = 359
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 44 ILFKFDAETAHNIAIWTAKYKLLPKSVYEDPPQLASQVWNLKFPNPLA 91
+LF FD ETAH ++I + L + +L + L FPNPL
Sbjct: 11 LLFAFDPETAHGLSIAALRCGLPAGTRAVRDIRLKVSLCGLDFPNPLG 58
>sp|A7NLW9|PYRD_ROSCS Dihydroorotate dehydrogenase (quinone) OS=Roseiflexus castenholzii
(strain DSM 13941 / HLO8) GN=pyrD PE=3 SV=1
Length = 367
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 14/96 (14%)
Query: 39 NVLLPILFKFDAETAHNIAI----WTAKYKLLPKSVYE----DPPQLASQVWNLKFPNPL 90
+++ P+LF+ DAE AH++ T++ LLP+ + D P L + L+F +PL
Sbjct: 4 HLIRPLLFRLDAERAHDVVTAMFRATSRMPLLPRLISALYAWDDPALMVEWAGLRFASPL 63
Query: 91 A-----ELRTQKPTEVSIQGPPTVSISGVEPQVPKP 121
+ R +++ G V + V P+ P+P
Sbjct: 64 GVAAGFDKRADLVDALALLGFSHVEVGTVTPR-PQP 98
>sp|A5UC11|PYRD_HAEIE Dihydroorotate dehydrogenase (quinone) OS=Haemophilus influenzae
(strain PittEE) GN=pyrD PE=3 SV=1
Length = 339
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 6/84 (7%)
Query: 45 LFKFDAETAHNIAIWTAK------YKLLPKSVYEDPPQLASQVWNLKFPNPLAELRTQKP 98
+F+ DAE AHN I K +K + KS+ P V + FPNP+
Sbjct: 9 IFQMDAEKAHNFTIQCLKLAGNPLFKPILKSIIHAPKGFPKMVMGVNFPNPIGLAAGADK 68
Query: 99 TEVSIQGPPTVSISGVEPQVPKPV 122
+I G + +E PV
Sbjct: 69 NGDAIDGFGALGFGFLELGTVTPV 92
>sp|Q1GVC1|PYRD_SPHAL Dihydroorotate dehydrogenase (quinone) OS=Sphingopyxis alaskensis
(strain DSM 13593 / LMG 18877 / RB2256) GN=pyrD PE=3
SV=1
Length = 356
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 43 PILFKFDAETAHNIAIWTAKYKLLPKSVYE-DPPQLASQVWNLKFPNPLA 91
P++ D E AHN+ + A + LP++ + P LA+++ L+FPNP+
Sbjct: 17 PLVHATDGEAAHNLTL--AALQPLPRARHALTSPMLATELAGLRFPNPVG 64
>sp|Q2RX27|PYRD_RHORT Dihydroorotate dehydrogenase (quinone) OS=Rhodospirillum rubrum
(strain ATCC 11170 / NCIB 8255) GN=pyrD PE=3 SV=1
Length = 367
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 43 PILFKFDAETAHNIAIWTAKYKLLPKSVYEDPPQLASQVWNLKFPNPLA 91
P++ D E AH++AI L D P LA +W +F NPL
Sbjct: 10 PLICGLDPERAHHLAIRALALGLAGHDRAADDPVLACSLWGRRFANPLG 58
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.132 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,798,924
Number of Sequences: 539616
Number of extensions: 1922588
Number of successful extensions: 3544
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 83
Number of HSP's that attempted gapping in prelim test: 3480
Number of HSP's gapped (non-prelim): 117
length of query: 122
length of database: 191,569,459
effective HSP length: 89
effective length of query: 33
effective length of database: 143,543,635
effective search space: 4736939955
effective search space used: 4736939955
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)