Query psy5901
Match_columns 122
No_of_seqs 111 out of 1022
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 21:13:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5901.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5901hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zwt_A Dihydroorotate dehydrog 99.9 2.7E-27 9.4E-32 194.4 3.4 90 29-118 1-91 (367)
2 3i65_A Dihydroorotate dehydrog 99.9 6.3E-26 2.2E-30 189.5 4.7 92 27-118 33-125 (415)
3 1tv5_A Dhodehase, dihydroorota 99.9 2.4E-23 8.2E-28 174.9 5.0 99 20-118 22-123 (443)
4 1f76_A Dihydroorotate dehydrog 99.7 5.1E-18 1.7E-22 135.7 4.1 81 36-118 2-86 (336)
5 3tjx_A Dihydroorotate dehydrog 99.6 1.4E-17 4.8E-22 134.6 -0.4 67 46-118 12-79 (354)
6 4ef8_A Dihydroorotate dehydrog 99.3 4.6E-13 1.6E-17 109.6 -0.6 50 69-118 29-79 (354)
7 3oix_A Putative dihydroorotate 99.1 1E-11 3.5E-16 101.2 0.5 45 74-118 35-80 (345)
8 1jub_A Dihydroorotate dehydrog 98.7 1.9E-09 6.6E-14 84.8 -0.8 42 77-118 2-44 (311)
9 2e6f_A Dihydroorotate dehydrog 98.5 1.5E-08 5.2E-13 79.7 -0.2 43 76-118 3-46 (314)
10 1ep3_A Dihydroorotate dehydrog 98.4 1.4E-07 4.7E-12 73.5 3.3 47 72-118 2-49 (311)
11 1gte_A Dihydropyrimidine dehyd 97.2 2.7E-05 9.3E-10 70.2 -1.4 45 74-118 530-575 (1025)
12 1p0k_A Isopentenyl-diphosphate 94.9 0.0022 7.6E-08 51.0 -1.8 53 65-118 30-93 (349)
13 2nli_A Lactate oxidase; flavoe 74.5 2.5 8.5E-05 34.0 3.6 38 64-101 56-99 (368)
14 1xm3_A Thiazole biosynthesis p 70.1 0.6 2.1E-05 35.8 -1.0 42 78-119 3-45 (264)
15 3sgz_A Hydroxyacid oxidase 2; 65.3 7.2 0.00025 31.5 4.4 47 48-94 28-76 (352)
16 1p4c_A L(+)-mandelate dehydrog 57.8 7.2 0.00025 31.3 3.2 31 64-94 48-79 (380)
17 2nzl_A Hydroxyacid oxidase 1; 51.8 19 0.00064 29.1 4.7 32 64-95 70-102 (392)
18 1gox_A (S)-2-hydroxy-acid oxid 47.4 16 0.00056 29.0 3.6 32 64-95 47-79 (370)
19 1kbi_A Cytochrome B2, L-LCR; f 46.2 16 0.00056 30.6 3.6 30 65-94 166-196 (511)
20 1vcf_A Isopentenyl-diphosphate 42.8 11 0.00038 29.3 2.0 23 73-95 44-66 (332)
21 1ypf_A GMP reductase; GUAC, pu 38.3 15 0.00053 28.7 2.1 32 65-96 21-55 (336)
22 2qr6_A IMP dehydrogenase/GMP r 35.8 16 0.00056 29.0 1.9 31 65-95 43-75 (393)
23 3ufc_X CAS6, putative uncharac 27.2 16 0.00056 26.8 0.5 15 48-62 84-98 (243)
24 3i4h_X Endoribonuclease; hydro 24.9 19 0.00065 27.5 0.5 12 107-118 237-248 (273)
25 2v2f_A Penicillin binding prot 23.5 17 0.00059 17.9 0.0 11 96-106 10-20 (26)
26 3sr7_A Isopentenyl-diphosphate 23.3 28 0.00095 28.0 1.2 28 72-99 71-101 (365)
27 2wbr_A GW182, gawky, LD47780P; 22.1 24 0.00081 23.1 0.5 12 108-119 42-53 (89)
No 1
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...
Probab=99.93 E-value=2.7e-27 Score=194.38 Aligned_cols=90 Identities=26% Similarity=0.393 Sum_probs=72.8
Q ss_pred eeeCChhHHHHhHHHHh-cCCChhHHHHHHHHHHhhccCCCCCCCCCCCCceeecCcccCCceeeccCCCCCCccCCCCC
Q psy5901 29 IYQNNENYYNNVLLPIL-FKFDAETAHNIAIWTAKYKLLPKSVYEDPPQLASQVWNLKFPNPLAELRTQKPTEVSIQGPP 107 (122)
Q Consensus 29 ~~~~~~~~Y~~l~~plL-f~ldPE~AH~lai~~lk~~l~~~~~~~~~~~L~~~v~Gl~F~NPvGLAAGfDKna~~i~~l~ 107 (122)
+|++++.||+.+++|+| |++|||+||++++.++++++.|.....+++.|+++++|++|+||||+|||+||||+.++.|.
T Consensus 1 ~~~~~~~~y~~~~~~~l~~~~~pe~ah~~~~~~l~~~~~~~~~~~~~~~L~~~~~Gl~~~NPvglAaG~~~~~~~~~~~~ 80 (367)
T 3zwt_A 1 MATGDERFYAEHLMPTLQGLLDPESAHRLAVRFTSLGLLPRARFQDSDMLEVRVLGHKFRNPVGIAAGFDKHGEAVDGLY 80 (367)
T ss_dssp -----------CHHHHHHHHSCHHHHHHHHHHHHHTTCC---CCCCCGGGCEEETTEEESSSEEECTTSSTTSSSHHHHH
T ss_pred CcCchHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhccccccccCCCCCCcEEECCEEcCCCCEeCCCcCCCHHHHHHHH
Confidence 46789999999999999 99999999999999999988776555788999999999999999999999999999999999
Q ss_pred CCCCceEeeCC
Q psy5901 108 TVSISGVEPQV 118 (122)
Q Consensus 108 ~lGFGfvEvG~ 118 (122)
++||||||+||
T Consensus 81 ~~g~G~v~~kt 91 (367)
T 3zwt_A 81 KMGFGFVEIGS 91 (367)
T ss_dssp HTTCSEEEEEE
T ss_pred hcCcCeEEeCC
Confidence 99999999996
No 2
>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A*
Probab=99.92 E-value=6.3e-26 Score=189.48 Aligned_cols=92 Identities=23% Similarity=0.248 Sum_probs=77.8
Q ss_pred heeeeCChhH-HHHhHHHHhcCCChhHHHHHHHHHHhhccCCCCCCCCCCCCceeecCcccCCceeeccCCCCCCccCCC
Q psy5901 27 INIYQNNENY-YNNVLLPILFKFDAETAHNIAIWTAKYKLLPKSVYEDPPQLASQVWNLKFPNPLAELRTQKPTEVSIQG 105 (122)
Q Consensus 27 ~~~~~~~~~~-Y~~l~~plLf~ldPE~AH~lai~~lk~~l~~~~~~~~~~~L~~~v~Gl~F~NPvGLAAGfDKna~~i~~ 105 (122)
|..+.+++.+ |+.++++++|++|||+||++++.++++++.|.....+++.|.++++|++|+||||+||||||||++++.
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~dpE~aH~l~~~~~~~~~~~~~~~~~~~~l~v~~~Gl~f~NPvglAAG~dk~~~~~~~ 112 (415)
T 3i65_A 33 PFESYNPEFFLYDIFLKFCLKYIDGEICHDLFLLLGKYNILPYDTSNDSIYACTNIKHLDFINPFGVAAGFDKNGVCIDS 112 (415)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHTTCSCCCCSCCCGGGCEEETTEEESSSEEECTTSSTTCSSHHH
T ss_pred hHhhcCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCcccccccccccEEECCEECCCCCEECCCCCCCHHHHHH
Confidence 3334555654 554555578999999999999999999988865566778899999999999999999999999999999
Q ss_pred CCCCCCceEeeCC
Q psy5901 106 PPTVSISGVEPQV 118 (122)
Q Consensus 106 l~~lGFGfvEvG~ 118 (122)
|.++||||||+||
T Consensus 113 l~~lGfG~vevgt 125 (415)
T 3i65_A 113 ILKLGFSFIEIGT 125 (415)
T ss_dssp HHTTTCSEEEEEE
T ss_pred HHHcCCCeEEeCc
Confidence 9999999999996
No 3
>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1
Probab=99.87 E-value=2.4e-23 Score=174.89 Aligned_cols=99 Identities=20% Similarity=0.288 Sum_probs=78.0
Q ss_pred HHhhhhhhee--eeCChhHHHHhHHHHhc-CCChhHHHHHHHHHHhhccCCCCCCCCCCCCceeecCcccCCceeeccCC
Q psy5901 20 SFALFSGINI--YQNNENYYNNVLLPILF-KFDAETAHNIAIWTAKYKLLPKSVYEDPPQLASQVWNLKFPNPLAELRTQ 96 (122)
Q Consensus 20 ~~~~~~~~~~--~~~~~~~Y~~l~~plLf-~ldPE~AH~lai~~lk~~l~~~~~~~~~~~L~~~v~Gl~F~NPvGLAAGf 96 (122)
+..+|.--.+ +..++.|+|.+++|++| ++|||+||++++.++++++.|.....+++.|+++++|++|+||||+|||+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~E~ah~~~~~~~~~~~~~~~~~~~~~~l~~~i~Gl~~~NPvglAAG~ 101 (443)
T 1tv5_A 22 GRDLYDDDDKFESYNPEFFLYDIFLKFCLKYIDGEICHDLFLLLGKYNILPYDTSNDSIYACTNIKHLDFINPFGVAAGF 101 (443)
T ss_dssp ----------CCTTSTTCHHHHHHHHHHHHHSCHHHHHHHHHHHHHTTCSCCCCSCCCGGGCEEETTEEESSSEEECTTT
T ss_pred chhhhhhHHHHhhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCcccccCCCccCCeEECCEEeCCCcEECCcc
Confidence 3344444333 44556677789999887 69999999999999999877764444556789999999999999999999
Q ss_pred CCCCccCCCCCCCCCceEeeCC
Q psy5901 97 KPTEVSIQGPPTVSISGVEPQV 118 (122)
Q Consensus 97 DKna~~i~~l~~lGFGfvEvG~ 118 (122)
|||+++++.+..+||||||+||
T Consensus 102 dk~~~~~~~l~~~GfG~v~~gt 123 (443)
T 1tv5_A 102 DKNGVCIDSILKLGFSFIEIGT 123 (443)
T ss_dssp TTTCSSHHHHHTTTCSEEEEEE
T ss_pred cCccHHHHHHHhcCCCEEEEee
Confidence 9999999999999999999986
No 4
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=99.70 E-value=5.1e-18 Score=135.69 Aligned_cols=81 Identities=20% Similarity=0.287 Sum_probs=69.9
Q ss_pred HHHHhHHHHhcCCChhHHHHHHHHHHhh----ccCCCCCCCCCCCCceeecCcccCCceeeccCCCCCCccCCCCCCCCC
Q psy5901 36 YYNNVLLPILFKFDAETAHNIAIWTAKY----KLLPKSVYEDPPQLASQVWNLKFPNPLAELRTQKPTEVSIQGPPTVSI 111 (122)
Q Consensus 36 ~Y~~l~~plLf~ldPE~AH~lai~~lk~----~l~~~~~~~~~~~L~~~v~Gl~F~NPvGLAAGfDKna~~i~~l~~lGF 111 (122)
+| ++++|+||++|||+||++++.+|+. ++.+.. ..+++.|+++++|++|+|||++|||+|++++..+.+...|+
T Consensus 2 ~y-~~~~~~~~~~~~e~ah~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~i~g~~l~npi~~aag~~~~~~~~~~~a~~G~ 79 (336)
T 1f76_A 2 YY-PFVRKALFQLDPERAHEFTFQQLRRITGTPFEALV-RQKVPAKPVNCMGLTFKNPLGLAAGLDKDGECIDALGAMGF 79 (336)
T ss_dssp CH-HHHHHHHTTSCHHHHHHHHHHHHHHHTTSGGGGGT-CCCCCCCCEEETTEEESSSEEECTTSSTTCCCHHHHHHTTC
T ss_pred cH-HHHHHHHhcCCHHHHHHHHHHHHHHhccCCccccc-cCCCCCCCeEECCEEcCCCcEeCcccCCcHHHHHHHHHcCc
Confidence 46 5999999999999999999999997 233322 22347899999999999999999999999999999999999
Q ss_pred ceEeeCC
Q psy5901 112 SGVEPQV 118 (122)
Q Consensus 112 GfvEvG~ 118 (122)
|++++|+
T Consensus 80 g~i~~~~ 86 (336)
T 1f76_A 80 GSIEIGT 86 (336)
T ss_dssp SEEEEEE
T ss_pred cEEEeCC
Confidence 9998775
No 5
>3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A*
Probab=99.64 E-value=1.4e-17 Score=134.62 Aligned_cols=67 Identities=10% Similarity=0.083 Sum_probs=44.6
Q ss_pred cCCChhHHHHHHHHHHhhccCCCCCCCCCCCCceeecCcccCCceeeccC-CCCCCccCCCCCCCCCceEeeCC
Q psy5901 46 FKFDAETAHNIAIWTAKYKLLPKSVYEDPPQLASQVWNLKFPNPLAELRT-QKPTEVSIQGPPTVSISGVEPQV 118 (122)
Q Consensus 46 f~ldPE~AH~lai~~lk~~l~~~~~~~~~~~L~~~v~Gl~F~NPvGLAAG-fDKna~~i~~l~~lGFGfvEvG~ 118 (122)
.-|+||.+|..++...+ ...+++.+|.+++||++|+||||+||| ||||+|+++.+..+||||||+||
T Consensus 12 ~gl~P~~~h~~~~~~~~------~~g~~~~~L~v~~~Gl~f~NPvglAaG~~~~~~e~~~~l~~~G~G~v~~~t 79 (354)
T 3tjx_A 12 SGLVPRGSHMASMTGGQ------QMGRGSMSLQVNLLNNTFANPFMNAAGVMCTTTEELVAMTESASGSLVSKS 79 (354)
T ss_dssp ---------------------------CCCCCCEEETTEEESSSEEECTTSSCSSHHHHHHHHHSSCSCEEEEE
T ss_pred cCCCchhhhhhhccchh------hcCCCCCceeEEECCEEcCCCcEEccCCCCCCHHHHHHHHHcCCCEEEeCC
Confidence 46899999987765433 123567899999999999999999999 99999999999999999999987
No 6
>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*
Probab=99.25 E-value=4.6e-13 Score=109.57 Aligned_cols=50 Identities=12% Similarity=0.117 Sum_probs=43.9
Q ss_pred CCCCCCCCCceeecCcccCCceeeccCCC-CCCccCCCCCCCCCceEeeCC
Q psy5901 69 SVYEDPPQLASQVWNLKFPNPLAELRTQK-PTEVSIQGPPTVSISGVEPQV 118 (122)
Q Consensus 69 ~~~~~~~~L~~~v~Gl~F~NPvGLAAGfD-Kna~~i~~l~~lGFGfvEvG~ 118 (122)
+...+++.|+++++|++|+||||+|||+| ||+++++.+..+||||||+||
T Consensus 29 ~~~~~~~~L~~~~~Gl~~~NPv~lAAG~~~~~~e~~~~l~~~G~G~v~~kt 79 (354)
T 4ef8_A 29 QMGRGSMSLQVNLLNNTFANPFMNAAGVMCTTTEELVAMTESASGSLVSKS 79 (354)
T ss_dssp -----CCCCCEEETTEEESSSEEECTTSSCSSHHHHHHHHHSSCSCEEEEE
T ss_pred hcCCCCCCcceEECCEECCCCCEeccCCCCCCHHHHHHHHHcCCCeEEeCc
Confidence 44578899999999999999999999999 999999999999999999994
No 7
>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}
Probab=99.10 E-value=1e-11 Score=101.19 Aligned_cols=45 Identities=7% Similarity=-0.041 Sum_probs=41.6
Q ss_pred CCCCceeecCcccCCceeeccCCCCCC-ccCCCCCCCCCceEeeCC
Q psy5901 74 PPQLASQVWNLKFPNPLAELRTQKPTE-VSIQGPPTVSISGVEPQV 118 (122)
Q Consensus 74 ~~~L~~~v~Gl~F~NPvGLAAGfDKna-~~i~~l~~lGFGfvEvG~ 118 (122)
-+.|+++++|++|+||||+|||+||++ ++++.+..+||||||+||
T Consensus 35 m~~L~~~~~Gl~~~NPv~lAaG~~~~~~e~~~~~~~~G~G~v~~kt 80 (345)
T 3oix_A 35 MVSTHTTIGSFDFDNCLMNAAGVYCMTREELAAIDHSEAGSFVTXT 80 (345)
T ss_dssp -CCCCEEETTEEESCSEEECTTSSCSSHHHHHHHHTSSCSBCBCCC
T ss_pred cCCcCeEECCEECCCCCEEcCCCCCCCHHHHHHHHHcCCCeEEeee
Confidence 367999999999999999999999755 999999999999999997
No 8
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=98.66 E-value=1.9e-09 Score=84.77 Aligned_cols=42 Identities=17% Similarity=0.122 Sum_probs=40.2
Q ss_pred CceeecCcccCCceeeccCC-CCCCccCCCCCCCCCceEeeCC
Q psy5901 77 LASQVWNLKFPNPLAELRTQ-KPTEVSIQGPPTVSISGVEPQV 118 (122)
Q Consensus 77 L~~~v~Gl~F~NPvGLAAGf-DKna~~i~~l~~lGFGfvEvG~ 118 (122)
|+++++|++|+|||++|||+ |||++.++.+...|||+||+|+
T Consensus 2 l~~~i~g~~l~npv~~Aag~~~~~~~~~~~~~~~G~g~i~~~~ 44 (311)
T 1jub_A 2 LNTTFANAKFANPFMNASGVHCMTIEDLEELKASQAGAYITKS 44 (311)
T ss_dssp CCEEETTEEESSSEEECTTSSCSSHHHHHHHHHSSCSCCBCCC
T ss_pred CceEECCEEcCCCcEECCCCCCCCHHHHHHHHHCCCCEEEeCc
Confidence 67899999999999999999 9999999999999999999886
No 9
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*
Probab=98.48 E-value=1.5e-08 Score=79.68 Aligned_cols=43 Identities=16% Similarity=0.157 Sum_probs=40.6
Q ss_pred CCceeecCcccCCceeeccCC-CCCCccCCCCCCCCCceEeeCC
Q psy5901 76 QLASQVWNLKFPNPLAELRTQ-KPTEVSIQGPPTVSISGVEPQV 118 (122)
Q Consensus 76 ~L~~~v~Gl~F~NPvGLAAGf-DKna~~i~~l~~lGFGfvEvG~ 118 (122)
.|+++++|++|+|||++|||+ |||++.++.+...|||+|++|+
T Consensus 3 dl~~~i~g~~l~nPi~~Aag~~~~~~~~~~~~~~~G~g~v~~~~ 46 (314)
T 2e6f_A 3 CLKLNLLDHVFANPFMNAAGVLCSTEEDLRCMTASSSGALVSKS 46 (314)
T ss_dssp CCCEEETTEEESSSEEECTTSSCSSHHHHHHHHHSSCSCEECCC
T ss_pred CcceEECCEecCCCcEECCCCCCCCHHHHHHHHHCCCCEEEeCc
Confidence 478999999999999999999 9999999999999999999876
No 10
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=98.39 E-value=1.4e-07 Score=73.49 Aligned_cols=47 Identities=9% Similarity=0.012 Sum_probs=41.5
Q ss_pred CCCCCCceeecCcccCCceeeccCCCCCCc-cCCCCCCCCCceEeeCC
Q psy5901 72 EDPPQLASQVWNLKFPNPLAELRTQKPTEV-SIQGPPTVSISGVEPQV 118 (122)
Q Consensus 72 ~~~~~L~~~v~Gl~F~NPvGLAAGfDKna~-~i~~l~~lGFGfvEvG~ 118 (122)
.+++.|+++++|++|+||+++|+|+|++++ ..+.+...|||++++|+
T Consensus 2 ~~~~~l~~~~~g~~l~npi~~aag~~~~~~~~~~~~~~~g~G~~~~~s 49 (311)
T 1ep3_A 2 TENNRLSVKLPGLDLKNPIIPASGCFGFGEEYAKYYDLNKLGSIMVKA 49 (311)
T ss_dssp CCCTTTCEEETTEEESSSEEECTTSSTTSTTGGGTSCGGGSSCEEEEE
T ss_pred CCCCccceEECCEECCCCcEECCCCCCCCHHHHHHHHhcCCCEEEeCe
Confidence 367789999999999999999999999885 67777789999999874
No 11
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=97.24 E-value=2.7e-05 Score=70.22 Aligned_cols=45 Identities=13% Similarity=0.111 Sum_probs=40.3
Q ss_pred CCCCceeecCcccCCceeeccC-CCCCCccCCCCCCCCCceEeeCC
Q psy5901 74 PPQLASQVWNLKFPNPLAELRT-QKPTEVSIQGPPTVSISGVEPQV 118 (122)
Q Consensus 74 ~~~L~~~v~Gl~F~NPvGLAAG-fDKna~~i~~l~~lGFGfvEvG~ 118 (122)
...|.++++|++|+|||++||| +++|.+.+......|+||+++||
T Consensus 530 ~v~ls~~~~G~~~~nPv~lAa~~~~~~~~~~~~~~~~g~G~vv~~t 575 (1025)
T 1gte_A 530 LVDISVEMAGLKFINPFGLASAAPTTSSSMIRRAFEAGWGFALTKT 575 (1025)
T ss_dssp GCCCCEEETTEEESSSEEECSSGGGSSHHHHHHHHHHTCSEEECCC
T ss_pred cccceeeeccccccCcccccCCCCCCCHHHHHHHHHCCcCeEEece
Confidence 4568999999999999999998 79999999998899999999663
No 12
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=94.90 E-value=0.0022 Score=51.04 Aligned_cols=53 Identities=8% Similarity=0.023 Sum_probs=38.9
Q ss_pred cCCCCC---CCCCCCCceeecCcccCCceeecc--CCC-CCC-----ccCCCCCCCCCceEeeCC
Q psy5901 65 LLPKSV---YEDPPQLASQVWNLKFPNPLAELR--TQK-PTE-----VSIQGPPTVSISGVEPQV 118 (122)
Q Consensus 65 l~~~~~---~~~~~~L~~~v~Gl~F~NPvGLAA--GfD-Kna-----~~i~~l~~lGFGfvEvG~ 118 (122)
+.|+.. ..++..+.++++|.+|+||+++|+ |++ +++ ....+....|+++ ++|+
T Consensus 30 l~p~~l~~~~~~~~d~~~~i~g~~~~~P~~iApm~g~~~~~~~~~~~~~a~aa~~~G~~~-~~~~ 93 (349)
T 1p0k_A 30 FVHVSLPDLALEQVDISTKIGELSSSSPIFINAMTGGGGKLTYEINKSLARAASQAGIPL-AVGS 93 (349)
T ss_dssp ECCCSCCCCCGGGCBCCEEETTEEESCSEEEECCCCSCHHHHHHHHHHHHHHHHHHTCCE-ECCC
T ss_pred EEccccCCCCcccCCceeEECCcccCCceEEcCccccchhhhhHHHHHHHHHHHHcCCcE-Eecc
Confidence 566532 234567899999999999999999 988 766 4445566778776 5665
No 13
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*
Probab=74.53 E-value=2.5 Score=33.99 Aligned_cols=38 Identities=16% Similarity=0.268 Sum_probs=28.9
Q ss_pred ccCCCCC-CCCCCCCceeecCcccCCceeec--c--C-CCCCCc
Q psy5901 64 KLLPKSV-YEDPPQLASQVWNLKFPNPLAEL--R--T-QKPTEV 101 (122)
Q Consensus 64 ~l~~~~~-~~~~~~L~~~v~Gl~F~NPvGLA--A--G-fDKna~ 101 (122)
.+.|+.. ..++..+.++++|.++++|+.+| | | .+++|+
T Consensus 56 ~l~pr~L~~~~~~d~st~i~G~~l~~Pi~iAPma~~g~~~~~~e 99 (368)
T 2nli_A 56 LLYPRLAQDVEAPDTSTEILGHKIKAPFIMAPIAAHGLAHTTKE 99 (368)
T ss_dssp EECCCCCCCCSCCCCCEEETTEEESSSEEECCCSCGGGTCTTHH
T ss_pred eeeccccCCCccCCcceEECCEecCCceeecchhhccCCCcHHH
Confidence 3666532 34566789999999999999999 6 5 577776
No 14
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=70.10 E-value=0.6 Score=35.78 Aligned_cols=42 Identities=10% Similarity=-0.077 Sum_probs=34.6
Q ss_pred ceeecCcccCCceeeccCCCCCCc-cCCCCCCCCCceEeeCCC
Q psy5901 78 ASQVWNLKFPNPLAELRTQKPTEV-SIQGPPTVSISGVEPQVP 119 (122)
Q Consensus 78 ~~~v~Gl~F~NPvGLAAGfDKna~-~i~~l~~lGFGfvEvG~~ 119 (122)
.+++.|++|+||+=+|-|=|.+.+ ..+.+..-|==.+|||.|
T Consensus 3 ~~~i~~~~~~~~~~~~t~g~p~~~~~~~~l~~~Gad~ielg~p 45 (264)
T 1xm3_A 3 MLTIGGKSFQSRLLLGTGKYPSFDIQKEAVAVSESDILTFAVR 45 (264)
T ss_dssp CEEETTEEESCCEEEECSCSSCHHHHHHHHHHHTCSEEEEETT
T ss_pred CeEECCEEecCCCEEEecCCCCHHHHHHHHHHcCCeEEEEccc
Confidence 367899999999999999998874 455666668779999987
No 15
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Probab=65.28 E-value=7.2 Score=31.48 Aligned_cols=47 Identities=13% Similarity=0.063 Sum_probs=33.7
Q ss_pred CChhHHHHHHHHHHhh-ccCCCC-CCCCCCCCceeecCcccCCceeecc
Q psy5901 48 FDAETAHNIAIWTAKY-KLLPKS-VYEDPPQLASQVWNLKFPNPLAELR 94 (122)
Q Consensus 48 ldPE~AH~lai~~lk~-~l~~~~-~~~~~~~L~~~v~Gl~F~NPvGLAA 94 (122)
-+-|..++.-..+++. .+.|+. .....+.+.++++|.+++-|+++|.
T Consensus 28 a~~e~t~~~N~~af~~~~l~prvl~dv~~~d~~t~llG~~~~~P~~iaP 76 (352)
T 3sgz_A 28 ADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRTTIQGQEISAPICISP 76 (352)
T ss_dssp CTTCHHHHHHHHHHHTCCBCCCCSSCCSSCBCCEEETTEEESSSEEECC
T ss_pred CcchHHHHHHHHHHHhceeeccccCCCCCCCCceEECCcccCCcceech
Confidence 3556666665566654 577763 3355678999999999999999975
No 16
>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A*
Probab=57.81 E-value=7.2 Score=31.30 Aligned_cols=31 Identities=19% Similarity=0.190 Sum_probs=24.3
Q ss_pred ccCCCCC-CCCCCCCceeecCcccCCceeecc
Q psy5901 64 KLLPKSV-YEDPPQLASQVWNLKFPNPLAELR 94 (122)
Q Consensus 64 ~l~~~~~-~~~~~~L~~~v~Gl~F~NPvGLAA 94 (122)
.+.|+.. ..++..+.++++|.++++|+.+|+
T Consensus 48 ~l~pr~L~~~~~~d~st~i~G~~l~~Pv~iap 79 (380)
T 1p4c_A 48 RFKPKRLVDVSRRSLQAEVLGKRQSMPLLIGP 79 (380)
T ss_dssp EECCCCSCCCSSCBCCEEETTEEESSSEEECC
T ss_pred eeeccccCCCccCcceeEECCeecCCceEecC
Confidence 4666533 345667899999999999999997
No 17
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*
Probab=51.80 E-value=19 Score=29.11 Aligned_cols=32 Identities=22% Similarity=0.320 Sum_probs=24.2
Q ss_pred ccCCCCC-CCCCCCCceeecCcccCCceeeccC
Q psy5901 64 KLLPKSV-YEDPPQLASQVWNLKFPNPLAELRT 95 (122)
Q Consensus 64 ~l~~~~~-~~~~~~L~~~v~Gl~F~NPvGLAAG 95 (122)
.+.|+.. ..++..+.++++|.++++|+.+|.=
T Consensus 70 ~l~pr~L~~~~~~d~st~i~G~~l~~Pi~iAPm 102 (392)
T 2nzl_A 70 KLYPRMLRNVAETDLSTSVLGQRVSMPICVGAT 102 (392)
T ss_dssp CBCCCCSSCCTTCBCCEEETTEEESSSEEECCC
T ss_pred EeehhhccCCcCCCcceEECCEecCCceEeccc
Confidence 3566532 3456678999999999999999864
No 18
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Probab=47.35 E-value=16 Score=28.99 Aligned_cols=32 Identities=13% Similarity=0.212 Sum_probs=24.1
Q ss_pred ccCCCCC-CCCCCCCceeecCcccCCceeeccC
Q psy5901 64 KLLPKSV-YEDPPQLASQVWNLKFPNPLAELRT 95 (122)
Q Consensus 64 ~l~~~~~-~~~~~~L~~~v~Gl~F~NPvGLAAG 95 (122)
.+.|+.. ..++..+.++++|.++++|+.+|+-
T Consensus 47 ~l~pr~l~~~~~~d~~t~i~G~~~~~Pi~iAPm 79 (370)
T 1gox_A 47 LFRPRILIDVTNIDMTTTILGFKISMPIMIAPT 79 (370)
T ss_dssp EECCCCSCCCSCCBCCEEETTEEESSSEEECCC
T ss_pred eeeccccCCCCCCCCceEECCcccCCceeEccc
Confidence 3566522 3455678999999999999999864
No 19
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*
Probab=46.23 E-value=16 Score=30.59 Aligned_cols=30 Identities=10% Similarity=0.117 Sum_probs=23.1
Q ss_pred cCCCCC-CCCCCCCceeecCcccCCceeecc
Q psy5901 65 LLPKSV-YEDPPQLASQVWNLKFPNPLAELR 94 (122)
Q Consensus 65 l~~~~~-~~~~~~L~~~v~Gl~F~NPvGLAA 94 (122)
+.|+.. ..++..+.++++|.++++|+.+|+
T Consensus 166 l~pr~L~dv~~~d~st~i~G~~l~~Pi~iAP 196 (511)
T 1kbi_A 166 FKPKILVDVRKVDISTDMLGSHVDVPFYVSA 196 (511)
T ss_dssp ECCCCSCCCSSCBCCEEETTEEESSSEEECC
T ss_pred cccccccCcccccCccccCCccCCCCeEecc
Confidence 556532 345567899999999999999986
No 20
>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A*
Probab=42.81 E-value=11 Score=29.26 Aligned_cols=23 Identities=9% Similarity=0.060 Sum_probs=19.6
Q ss_pred CCCCCceeecCcccCCceeeccC
Q psy5901 73 DPPQLASQVWNLKFPNPLAELRT 95 (122)
Q Consensus 73 ~~~~L~~~v~Gl~F~NPvGLAAG 95 (122)
++..+.++++|.++++|+.+|+.
T Consensus 44 ~~~d~~~~i~g~~l~~P~~iapm 66 (332)
T 1vcf_A 44 SEVDLTTPFLGKTLKAPFLIGAM 66 (332)
T ss_dssp GGCCCCEEETTEEESSSEEECCC
T ss_pred CCCCcceEECCcccCCceEEecc
Confidence 34568899999999999999974
No 21
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*
Probab=38.30 E-value=15 Score=28.66 Aligned_cols=32 Identities=19% Similarity=0.210 Sum_probs=23.9
Q ss_pred cCCCC---CCCCCCCCceeecCcccCCceeeccCC
Q psy5901 65 LLPKS---VYEDPPQLASQVWNLKFPNPLAELRTQ 96 (122)
Q Consensus 65 l~~~~---~~~~~~~L~~~v~Gl~F~NPvGLAAGf 96 (122)
+.|+. ...++..+.++++|+++++||.+|+.-
T Consensus 21 l~p~~~~~~~~~~vdl~t~i~g~~l~~Pi~~a~ma 55 (336)
T 1ypf_A 21 LIPAKCIVNSRSECDTTVTLGKHKFKLPVVPANMQ 55 (336)
T ss_dssp ECCCCCCCSSGGGCBCCEEETTEEESSSEEECSST
T ss_pred EecccCCCCCcccCcceEEECCEEecCcEEECCCC
Confidence 56653 223456799999999999999997643
No 22
>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}
Probab=35.80 E-value=16 Score=28.95 Aligned_cols=31 Identities=10% Similarity=0.116 Sum_probs=22.8
Q ss_pred cCCC--CCCCCCCCCceeecCcccCCceeeccC
Q psy5901 65 LLPK--SVYEDPPQLASQVWNLKFPNPLAELRT 95 (122)
Q Consensus 65 l~~~--~~~~~~~~L~~~v~Gl~F~NPvGLAAG 95 (122)
+.|+ ....++..+.++++|+++++||.+|+.
T Consensus 43 l~p~~~~~~~~~vdlst~l~g~~l~~Pii~Apm 75 (393)
T 2qr6_A 43 VVSSRRTRSSKDVDTTWHIDAYKFDLPFMNHPS 75 (393)
T ss_dssp ECCCSCCCCGGGCBCCEEETTEEESSSEEECCC
T ss_pred EccCCCCCChhHCCceeEEcccccCCCeEeCCC
Confidence 4564 222345668999999999999998865
No 23
>3ufc_X CAS6, putative uncharacterized protein; ferredoxin-like domain, RNA binding, hydrolase; 2.03A {Pyrococcus furiosus} PDB: 3qjl_A 3qjj_A 3qjp_A
Probab=27.23 E-value=16 Score=26.80 Aligned_cols=15 Identities=20% Similarity=0.051 Sum_probs=7.0
Q ss_pred CChhHHHHHHHHHHh
Q psy5901 48 FDAETAHNIAIWTAK 62 (122)
Q Consensus 48 ldPE~AH~lai~~lk 62 (122)
.|+|.+..+.-.+++
T Consensus 84 ~~~e~~~~l~~~l~~ 98 (243)
T 3ufc_X 84 SNKEIIKGIVEGIEK 98 (243)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhh
Confidence 344544444444444
No 24
>3i4h_X Endoribonuclease; hydrolase; 2.25A {Pyrococcus furiosus} PDB: 3pkm_A
Probab=24.91 E-value=19 Score=27.45 Aligned_cols=12 Identities=8% Similarity=0.055 Sum_probs=8.4
Q ss_pred CCCCCceEeeCC
Q psy5901 107 PTVSISGVEPQV 118 (122)
Q Consensus 107 ~~lGFGfvEvG~ 118 (122)
-+.|||+|||=.
T Consensus 237 ns~GFG~vev~~ 248 (273)
T 3i4h_X 237 NSLGFGMVKVEG 248 (273)
T ss_dssp GGGTCCCEEECC
T ss_pred CCccceeEEEEc
Confidence 356888888743
No 25
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=23.51 E-value=17 Score=17.85 Aligned_cols=11 Identities=9% Similarity=-0.091 Sum_probs=8.5
Q ss_pred CCCCCccCCCC
Q psy5901 96 QKPTEVSIQGP 106 (122)
Q Consensus 96 fDKna~~i~~l 106 (122)
+||||+.+..|
T Consensus 10 YD~~g~~i~~l 20 (26)
T 2v2f_A 10 YDNKNQLIADL 20 (26)
T ss_pred EeCCCCEeeec
Confidence 58888887766
No 26
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Probab=23.32 E-value=28 Score=28.01 Aligned_cols=28 Identities=11% Similarity=0.016 Sum_probs=20.0
Q ss_pred CCCCCCceeecCcccCCceeec---cCCCCC
Q psy5901 72 EDPPQLASQVWNLKFPNPLAEL---RTQKPT 99 (122)
Q Consensus 72 ~~~~~L~~~v~Gl~F~NPvGLA---AGfDKn 99 (122)
.++..+.++++|.+|++|+-+| +|-|+.
T Consensus 71 ~~~vd~st~i~g~~l~~Pi~iapMtgg~~~~ 101 (365)
T 3sr7_A 71 LAEIDLSTHFAGQDFDFPFYINAMTGGSQKG 101 (365)
T ss_dssp GGGCCCCEEETTEEESSSEEEECC----CCC
T ss_pred cccccceEEECCEEccCceEeccccCCCcch
Confidence 3456789999999999999984 454443
No 27
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=22.12 E-value=24 Score=23.05 Aligned_cols=12 Identities=8% Similarity=-0.072 Sum_probs=10.0
Q ss_pred CCCCceEeeCCC
Q psy5901 108 TVSISGVEPQVP 119 (122)
Q Consensus 108 ~lGFGfvEvG~~ 119 (122)
+-||||||.-++
T Consensus 42 ~kGfaFVey~~~ 53 (89)
T 2wbr_A 42 NQGIALCKYTTR 53 (89)
T ss_dssp TTTEEEEEESSH
T ss_pred CCcEEEEEECCH
Confidence 579999998765
Done!