RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5901
(122 letters)
>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial;
triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein,
membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A
{Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A*
3o8a_A* 3sfk_A*
Length = 415
Score = 83.5 bits (207), Expect = 3e-20
Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 1/85 (1%)
Query: 6 LLKKLVSLAAVSSGSFALFSGINIYQNNENYYNNVLLPILFKFDAETAHNIAIWTAKYKL 65
L+ + +A+++ G Y Y+ L L D E H++ + KY +
Sbjct: 14 LVPRGSHMASMTGGQQGRDP-FESYNPEFFLYDIFLKFCLKYIDGEICHDLFLLLGKYNI 72
Query: 66 LPKSVYEDPPQLASQVWNLKFPNPL 90
LP D + + +L F NP
Sbjct: 73 LPYDTSNDSIYACTNIKHLDFINPF 97
>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri,
dihydroorotate; alpha-beta barrel, TIM barrel,
oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium
falciparum} SCOP: c.1.4.1
Length = 443
Score = 82.4 bits (204), Expect = 7e-20
Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 3/87 (3%)
Query: 7 LKKLVSLAAVSSGSFALFSG---INIYQNNENYYNNVLLPILFKFDAETAHNIAIWTAKY 63
+ S+ L+ Y Y+ L L D E H++ + KY
Sbjct: 9 HHGMASMTGGQQMGRDLYDDDDKFESYNPEFFLYDIFLKFCLKYIDGEICHDLFLLLGKY 68
Query: 64 KLLPKSVYEDPPQLASQVWNLKFPNPL 90
+LP D + + +L F NP
Sbjct: 69 NILPYDTSNDSIYACTNIKHLDFINPF 95
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond;
oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens}
PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A*
3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A*
2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A*
...
Length = 367
Score = 78.7 bits (195), Expect = 9e-19
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 29 IYQNNEN-YYNNVLLPILFKFDAETAHNIAIWTAKYKLLPKSVYEDPPQLASQVWNLKFP 87
+ +E Y +++ + D E+AH +A+ LLP++ ++D L +V KF
Sbjct: 1 MATGDERFYAEHLMPTLQGLLDPESAHRLAVRFTSLGLLPRARFQDSDMLEVRVLGHKFR 60
Query: 88 NPL 90
NP+
Sbjct: 61 NPV 63
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN
binding domain, orotate complex, oxidoreductase; HET:
MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Length = 336
Score = 61.0 bits (149), Expect = 2e-12
Identities = 14/57 (24%), Positives = 18/57 (31%), Gaps = 3/57 (5%)
Query: 37 YNNVLLPILFKFDAETAHNIAIWTAKYKL---LPKSVYEDPPQLASQVWNLKFPNPL 90
Y + LF+ D E AH + V + P L F NPL
Sbjct: 2 YYPFVRKALFQLDPERAHEFTFQQLRRITGTPFEALVRQKVPAKPVNCMGLTFKNPL 58
>3gz3_A Dihydroorotate dehydrogenase, putative; dhodh, oxidoreductase;
HET: FMN ORO; 1.90A {Leishmania major} PDB: 3gye_A*
Length = 354
Score = 38.4 bits (90), Expect = 2e-04
Identities = 6/49 (12%), Positives = 11/49 (22%), Gaps = 7/49 (14%)
Query: 49 DAETAHNIAIW-------TAKYKLLPKSVYEDPPQLASQVWNLKFPNPL 90
+ H+ + + L + N F NP
Sbjct: 2 GSSHHHHHHSSGLVPAGSHMASMTGGQQMGRGSMSLQVNLLNNTFANPF 50
>3dt5_A Uncharacterized protein AF_0924; structural genomics, APC7732,
unknown function, PSI-2, prote structure initiative;
HET: MSE; 1.94A {Archaeoglobus fulgidus}
Length = 135
Score = 27.0 bits (59), Expect = 1.4
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 38 NNVL--LPILFKFDAETAHNIAIWTAKYKLLPKSVYEDPPQLASQVWNLKFPNPLAELRT 95
NN+L LP+ FKF A+ A WT K +E + +W +F L E T
Sbjct: 60 NNLLRVLPMHFKFKADKIAGSANWT----FYAKEDFEQWKEALDVLWE-EFLEVLKEYYT 114
Query: 96 QKPTEVSIQGPP 107
TE+S+ P
Sbjct: 115 LSGTEISLPEKP 126
>2wns_A Orotate phosphoribosyltransferase; alternative splicing,
multifunctional enzyme, lyase, polymorphism,
decarboxylase, phosphoprotein; HET: OMP; 1.90A {Homo
sapiens}
Length = 205
Score = 26.1 bits (58), Expect = 3.1
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 1 MKKPTLLKKLVSLAAVSSGSFALFSGI--NIYQNN 33
M L+ L + A G F L SG+ IY +
Sbjct: 1 MALGPLVTGLYDVQAFKFGDFVLKSGLSSPIYIDL 35
>2p1z_A Phosphoribosyltransferase; STRU genomics, PSI-2, protein
structure initiative, midwest CENT structural genomics,
MCSG; 2.44A {Corynebacterium diphtheriae}
Length = 180
Score = 25.3 bits (56), Expect = 5.3
Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 1 MKKPTLLKKLVSLAAVSSGSFALFSGI--NIY 30
M K L +LV AV G L SG + Y
Sbjct: 4 MSKKAELAELVKELAVVHGKVTLSSGKEADYY 35
>2h7c_A Liver carboxylesterase 1; enzyme, cholesteryl esterase, hydrolase;
HET: NAG NDG SIA COA; 2.00A {Homo sapiens} SCOP:
c.69.1.1 PDB: 2dqy_A* 2dr0_A* 2dqz_A* 1mx1_A* 1mx5_A*
1mx9_A* 4ab1_A* 1ya4_A* 1yah_A* 1yaj_A* 1ya8_A* 2hrr_A*
2hrq_A* 3k9b_A* 1k4y_A*
Length = 542
Score = 24.7 bits (54), Expect = 9.7
Identities = 9/24 (37%), Positives = 10/24 (41%), Gaps = 3/24 (12%)
Query: 53 AHNIAIWTAKYKLLPKSVYEDPPQ 76
+A WT L K E PPQ
Sbjct: 522 DKEVAFWT---NLFAKKAVEKPPQ 542
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.132 0.388
Gapped
Lambda K H
0.267 0.0814 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,762,721
Number of extensions: 90127
Number of successful extensions: 91
Number of sequences better than 10.0: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 12
Length of query: 122
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 40
Effective length of database: 4,412,271
Effective search space: 176490840
Effective search space used: 176490840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.3 bits)