RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5901
         (122 letters)



>d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 367

 Score = 76.6 bits (187), Expect = 2e-18
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 29 IYQNNENYYNNVLLPILFKF-DAETAHNIAIWTAKYKLLPKSVYEDPPQLASQVWNLKFP 87
          +   +E +Y   L+P L    D E+AH +A+      LLP++ ++D   L  +V   KF 
Sbjct: 1  MATGDERFYAEHLMPTLQGLLDPESAHRLAVRFTSLGLLPRARFQDSDMLEVRVLGHKFR 60

Query: 88 NPL 90
          NP+
Sbjct: 61 NPV 63


>d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase
          {Plasmodium falciparum [TaxId: 5833]}
          Length = 409

 Score = 71.1 bits (173), Expect = 3e-16
 Identities = 16/61 (26%), Positives = 24/61 (39%)

Query: 30 YQNNENYYNNVLLPILFKFDAETAHNIAIWTAKYKLLPKSVYEDPPQLASQVWNLKFPNP 89
          Y      Y+  L   L   D E  H++ +   KY +LP     D     + + +L F NP
Sbjct: 4  YNPEFFLYDIFLKFCLKYIDGEICHDLFLLLGKYNILPYDTSNDSIYACTNIKHLDFINP 63

Query: 90 L 90
           
Sbjct: 64 F 64


>d1f76a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Escherichia
          coli [TaxId: 562]}
          Length = 336

 Score = 56.9 bits (136), Expect = 2e-11
 Identities = 14/57 (24%), Positives = 18/57 (31%), Gaps = 3/57 (5%)

Query: 37 YNNVLLPILFKFDAETAHNIAIWTAKY---KLLPKSVYEDPPQLASQVWNLKFPNPL 90
          Y   +   LF+ D E AH       +          V +  P        L F NPL
Sbjct: 2  YYPFVRKALFQLDPERAHEFTFQQLRRITGTPFEALVRQKVPAKPVNCMGLTFKNPL 58


>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical  kinase-like protein
           Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
          Length = 178

 Score = 26.5 bits (57), Expect = 0.91
 Identities = 12/104 (11%), Positives = 24/104 (23%), Gaps = 8/104 (7%)

Query: 3   KPTLLKKLVSLAAVSSGSFALFSGINIYQNNENYYNNVLLPILFKFDAETAHNIAIWTAK 62
           K TL+KK+V      +  F      +        +  +      K  +            
Sbjct: 13  KTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGS 72

Query: 63  YKLLPKSVYEDPPQLASQVWNLKFPNPLAELRTQKPTEVSIQGP 106
           Y      V     +    +          E +  +   + I   
Sbjct: 73  YG-----VNVQYFEE---LAIPILERAYREAKKDRRKVIIIDEI 108


>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus
          lactis, isozyme B [TaxId: 1358]}
          Length = 311

 Score = 25.0 bits (53), Expect = 2.8
 Identities = 5/19 (26%), Positives = 10/19 (52%), Gaps = 1/19 (5%)

Query: 72 EDPPQLASQVWNLKFPNPL 90
          E+   L+ ++  L   NP+
Sbjct: 3  ENNR-LSVKLPGLDLKNPI 20


>d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase
          {Trypanosoma brucei [TaxId: 5691]}
          Length = 312

 Score = 24.9 bits (53), Expect = 3.3
 Identities = 4/14 (28%), Positives = 6/14 (42%)

Query: 77 LASQVWNLKFPNPL 90
          L   +   +F NP 
Sbjct: 2  LKVNILGHEFSNPF 15


>d1r3ea2 d.265.1.2 (A:10-237) Pseudouridine synthase II TruB
           {Thermotoga maritima [TaxId: 2336]}
          Length = 228

 Score = 24.8 bits (53), Expect = 3.5
 Identities = 7/35 (20%), Positives = 15/35 (42%)

Query: 10  LVSLAAVSSGSFALFSGINIYQNNENYYNNVLLPI 44
            V L   S G   +   +N+++       N ++P+
Sbjct: 188 AVELVRESVGPHTIEESLNVFEAAPEEIENRIIPL 222


>d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus
          lactis, isozyme A [TaxId: 1358]}
          Length = 311

 Score = 24.6 bits (52), Expect = 3.8
 Identities = 6/14 (42%), Positives = 7/14 (50%)

Query: 77 LASQVWNLKFPNPL 90
          L +   N KF NP 
Sbjct: 2  LNTTFANAKFANPF 15


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.132    0.388 

Gapped
Lambda     K      H
   0.267   0.0441    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 430,528
Number of extensions: 17533
Number of successful extensions: 39
Number of sequences better than 10.0: 1
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 9
Length of query: 122
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 47
Effective length of database: 1,377,846
Effective search space: 64758762
Effective search space used: 64758762
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.6 bits)