BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5902
(103 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3O1Z|A Chain A, High Resolution Crystal Structure Of Histidine Triad
Nucleotide- Binding Protein 1 (Hint1) Double Cysteine
Mutant From Rabbit
Length = 126
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 52/105 (49%), Gaps = 9/105 (8%)
Query: 4 KVENYVCFTDSTVALCWVHGTPPQGN----VFVANRVSKLQQTIDCERLFHILGHLMIXX 59
++ + F D AL + H PQ V +S++ D + +LGHLMI
Sbjct: 26 EIPAKIIFEDDQ-ALAF-HDISPQAPTHFLVIPKKHISQISAAEDADE--SLLGHLMIVG 81
Query: 60 XXXXXXX-LIRNYRVVVNNGWEAVQFSGHLHLHVLGGRPLHWPPG 103
L + YR+VVN G + Q H+HLHVLGGR ++WPPG
Sbjct: 82 KKAAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMNWPPG 126
>pdb|3O1C|A Chain A, High Resolution Crystal Structure Of Histidine Triad
Nucleotide- Binding Protein 1 (Hint1) C38a Mutant From
Rabbit Complexed With Adenosine
Length = 126
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 52/105 (49%), Gaps = 9/105 (8%)
Query: 4 KVENYVCFTDSTVALCWVHGTPPQGN----VFVANRVSKLQQTIDCERLFHILGHLMIXX 59
++ + F D AL + H PQ V +S++ D + +LGHLMI
Sbjct: 26 EIPAKIIFEDDQ-ALAF-HDISPQAPTHFLVIPKKHISQISAAEDADE--SLLGHLMIVG 81
Query: 60 XX-XXXXXLIRNYRVVVNNGWEAVQFSGHLHLHVLGGRPLHWPPG 103
L + YR+VVN G + Q H+HLHVLGGR ++WPPG
Sbjct: 82 KKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMNWPPG 126
>pdb|3O1X|A Chain A, High Resolution Crystal Structure Of Histidine Triad
Nucleotide- Binding Protein 1 (Hint1) C84a Mutant From
Rabbit Complexed With Adenosine
Length = 126
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 30 VFVANRVSKLQQTIDCERLFHILGHLMIXXXXXXXXX-LIRNYRVVVNNGWEAVQFSGHL 88
V +S++ D + +LGHLMI L + YR+VVN G + Q H+
Sbjct: 54 VIPKKHISQISAAEDADE--SLLGHLMIVGKKAAADLGLKKGYRMVVNEGSDGGQSVYHV 111
Query: 89 HLHVLGGRPLHWPPG 103
HLHVLGGR ++WPPG
Sbjct: 112 HLHVLGGRQMNWPPG 126
>pdb|4EQE|A Chain A, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Lys-Ams
pdb|4EQE|B Chain B, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Lys-Ams
pdb|4EQG|A Chain A, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Ala-Ams
pdb|4EQG|B Chain B, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Ala-Ams
pdb|4EQH|A Chain A, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Trp-Ams
pdb|4EQH|B Chain B, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Trp-Ams
Length = 128
Score = 55.1 bits (131), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 51 ILGHLMIXXXX-XXXXXLIRNYRVVVNNGWEAVQFSGHLHLHVLGGRPLHWPPG 103
+LGHLMI L + YR+VVN G + Q H+HLHVLGGR +HWPPG
Sbjct: 75 LLGHLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMHWPPG 128
>pdb|1KPA|A Chain A, Pkci-1-Zinc
pdb|1KPA|B Chain B, Pkci-1-Zinc
pdb|1KPC|A Chain A, Pkci-1-Apo+zinc
pdb|1KPC|B Chain B, Pkci-1-Apo+zinc
pdb|1KPC|C Chain C, Pkci-1-Apo+zinc
pdb|1KPC|D Chain D, Pkci-1-Apo+zinc
pdb|1KPE|A Chain A, Pkci-Transition State Analog
pdb|1KPF|A Chain A, Pkci-Substrate Analog
pdb|1AV5|A Chain A, Pkci-Substrate Analog
pdb|1AV5|B Chain B, Pkci-Substrate Analog
pdb|1KPE|B Chain B, Pkci-Transition State Analog
Length = 126
Score = 55.1 bits (131), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 51 ILGHLMIXXXX-XXXXXLIRNYRVVVNNGWEAVQFSGHLHLHVLGGRPLHWPPG 103
+LGHLMI L + YR+VVN G + Q H+HLHVLGGR +HWPPG
Sbjct: 73 LLGHLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMHWPPG 126
>pdb|1KPB|A Chain A, Pkci-1-Apo
pdb|1KPB|B Chain B, Pkci-1-Apo
Length = 125
Score = 55.1 bits (131), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 51 ILGHLMIXXXX-XXXXXLIRNYRVVVNNGWEAVQFSGHLHLHVLGGRPLHWPPG 103
+LGHLMI L + YR+VVN G + Q H+HLHVLGGR +HWPPG
Sbjct: 72 LLGHLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMHWPPG 125
>pdb|3TW2|A Chain A, High Resolution Structure Of Human Histidine Triad
Nucleotide-binding Protein 1 (hhint1)/amp Complex In A
Monoclinic Space Group
pdb|3TW2|B Chain B, High Resolution Structure Of Human Histidine Triad
Nucleotide-binding Protein 1 (hhint1)/amp Complex In A
Monoclinic Space Group
Length = 126
Score = 55.1 bits (131), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 51 ILGHLMIXXXX-XXXXXLIRNYRVVVNNGWEAVQFSGHLHLHVLGGRPLHWPPG 103
+LGHLMI L + YR+VVN G + Q H+HLHVLGGR +HWPPG
Sbjct: 73 LLGHLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMHWPPG 126
>pdb|1RZY|A Chain A, Crystal Structure Of Rabbit Hint Complexed With N-
Ethylsulfamoyladenosine
pdb|3QGZ|A Chain A, Re-Investigated High Resolution Crystal Structure Of
Histidine Triad Nucleotide-Binding Protein 1 (Hint1)
From Rabbit Complexed With Adenosine
Length = 126
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 30 VFVANRVSKLQQTIDCERLFHILGHLMIXXXX-XXXXXLIRNYRVVVNNGWEAVQFSGHL 88
V +S++ D + +LGHLMI L + YR+VVN G + Q H+
Sbjct: 54 VIPKKHISQISAAEDADE--SLLGHLMIVGKKCAADLGLKKGYRMVVNEGSDGGQSVYHV 111
Query: 89 HLHVLGGRPLHWPPG 103
HLHVLGGR ++WPPG
Sbjct: 112 HLHVLGGRQMNWPPG 126
>pdb|3RHN|A Chain A, Histidine Triad Nucleotide-Binding Protein (Hint) From
Rabbit Complexed With Gmp
pdb|4RHN|A Chain A, Histidine Triad Nucleotide-binding Protein (hint) From
Rabbit Complexed With Adenosine
pdb|5RHN|A Chain A, Histidine Triad Nucleotide-Binding Protein (Hint) From
Rabbit Complexed With 8-Br-Amp
pdb|6RHN|A Chain A, Histidine Triad Nucleotide-Binding Protein (Hint) From
Rabbit Without Nucleotide
Length = 115
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 30 VFVANRVSKLQQTIDCERLFHILGHLMIXXXX-XXXXXLIRNYRVVVNNGWEAVQFSGHL 88
V +S++ D + +LGHLMI L + YR+VVN G + Q H+
Sbjct: 43 VIPKKHISQISAAEDADE--SLLGHLMIVGKKCAADLGLKKGYRMVVNEGSDGGQSVYHV 100
Query: 89 HLHVLGGRPLHWPPG 103
HLHVLGGR ++WPPG
Sbjct: 101 HLHVLGGRQMNWPPG 115
>pdb|3OJ7|A Chain A, Crystal Structure Of A Histidine Triad Family Protein From
Entamoeba Histolytica, Bound To Sulfate
pdb|3OMF|A Chain A, Crystal Structure Of A Histidine Triad Family Protein From
Entamoeba Histolytica, Bound To Amp
pdb|3OXK|A Chain A, Crystal Structure Of A Histidine Triad Family Protein From
Entamoeba Histolytica, Bound To Gmp
Length = 117
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 69 RNYRVVVNNGWEAVQFSGHLHLHVLGGRPLHW 100
YRVV N G +A Q H+H H+LGG+ L W
Sbjct: 83 EGYRVVNNIGEDAGQTVKHIHFHILGGKKLAW 114
>pdb|3N1S|A Chain A, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|B Chain B, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|E Chain E, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|F Chain F, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|I Chain I, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|J Chain J, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|M Chain M, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|N Chain N, Crystal Structure Of Wild Type Echint Gmp Complex
Length = 119
Score = 32.3 bits (72), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 71 YRVVVNNGWEAVQFSGHLHLHVLGGRPL 98
YR+++N Q H+H+H+LGGRPL
Sbjct: 83 YRLIMNTNRHGGQEVYHIHMHLLGGRPL 110
>pdb|3N1T|A Chain A, Crystal Structure Of The H101a Mutant Echint Gmp Complex
pdb|3N1T|B Chain B, Crystal Structure Of The H101a Mutant Echint Gmp Complex
pdb|3N1T|E Chain E, Crystal Structure Of The H101a Mutant Echint Gmp Complex
pdb|3N1T|F Chain F, Crystal Structure Of The H101a Mutant Echint Gmp Complex
Length = 119
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 71 YRVVVNNGWEAVQFSGHLHLHVLGGRPL 98
YR+++N Q H+ +H+LGGRPL
Sbjct: 83 YRLIMNTNRHGGQEVYHIAMHLLGGRPL 110
>pdb|1XQU|A Chain A, Hit Family Hydrolase From Clostridium Thermocellum Cth-393
pdb|1XQU|B Chain B, Hit Family Hydrolase From Clostridium Thermocellum Cth-393
Length = 147
Score = 28.9 bits (63), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 69 RNYRVVVNNGWEAVQFSGHLHLHVLGG 95
+ YR++ N G A Q HLH H+LGG
Sbjct: 113 KGYRLITNCGVAAGQTVFHLHYHLLGG 139
>pdb|4EGU|A Chain A, 0.95a Resolution Structure Of A Histidine Triad Protein
From Clostridium Difficile
pdb|4EGU|B Chain B, 0.95a Resolution Structure Of A Histidine Triad Protein
From Clostridium Difficile
Length = 119
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 71 YRVVVNNGWEAVQFSGHLHLHVLGGRPL 98
+RV+ N G + Q HLH H+L G+ L
Sbjct: 84 FRVINNCGSDGGQEVKHLHYHILAGKKL 111
>pdb|2KVI|A Chain A, Structure Of Nab3 Rrm
Length = 96
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 18 LCWVHGTPPQGNVFVANRVSKLQQTIDCERLFHILGHLM 56
+ +H PP+ +F+ N K D R+F GH+M
Sbjct: 1 MTEMHNIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIM 39
>pdb|3UGM|A Chain A, Structure Of Tal Effector Pthxo1 Bound To Its Dna Target
Length = 1047
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 18 LCWVHGTPPQGNVFVANRVSKLQQTIDCERLFHIL 52
LC HG PP V +A+ + Q +RL +L
Sbjct: 249 LCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVL 283
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.143 0.492
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,995,653
Number of Sequences: 62578
Number of extensions: 86875
Number of successful extensions: 337
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 306
Number of HSP's gapped (non-prelim): 31
length of query: 103
length of database: 14,973,337
effective HSP length: 68
effective length of query: 35
effective length of database: 10,718,033
effective search space: 375131155
effective search space used: 375131155
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)