Query psy5902
Match_columns 103
No_of_seqs 174 out of 1067
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 21:14:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5902.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5902hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3275|consensus 100.0 2.1E-33 4.7E-38 187.2 9.0 94 5-103 29-127 (127)
2 PRK10687 purine nucleoside pho 100.0 1.8E-29 3.9E-34 169.8 10.0 91 4-99 15-111 (119)
3 COG0537 Hit Diadenosine tetrap 99.9 4.5E-27 9.8E-32 161.6 9.7 86 5-98 14-107 (138)
4 PF01230 HIT: HIT domain; Int 99.9 5.5E-26 1.2E-30 146.7 8.0 87 3-97 3-97 (98)
5 cd01276 PKCI_related Protein K 99.9 7E-25 1.5E-29 142.4 9.8 86 5-95 13-104 (104)
6 cd00468 HIT_like HIT family: H 99.9 1.1E-22 2.5E-27 127.2 8.0 78 9-94 1-86 (86)
7 cd01275 FHIT FHIT (fragile his 99.9 4E-22 8.7E-27 134.0 10.0 87 6-97 14-105 (126)
8 KOG3379|consensus 99.9 3.2E-22 6.8E-27 136.9 8.4 89 2-98 13-109 (150)
9 cd01277 HINT_subgroup HINT (hi 99.9 1.3E-21 2.9E-26 126.3 9.8 82 6-95 14-103 (103)
10 cd01278 aprataxin_related apra 99.8 6.8E-21 1.5E-25 123.9 9.2 83 5-94 15-104 (104)
11 PF11969 DcpS_C: Scavenger mRN 99.7 3.3E-17 7.1E-22 109.5 5.3 84 4-96 12-105 (116)
12 PRK11720 galactose-1-phosphate 99.6 5E-15 1.1E-19 114.9 9.3 83 6-96 210-303 (346)
13 cd00608 GalT Galactose-1-phosp 99.6 6.4E-15 1.4E-19 113.3 9.4 84 6-97 200-296 (329)
14 TIGR00209 galT_1 galactose-1-p 99.6 1E-14 2.2E-19 113.2 9.4 84 5-96 209-303 (347)
15 PLN02643 ADP-glucose phosphory 99.5 1.3E-13 2.9E-18 106.6 9.4 82 8-97 211-304 (336)
16 KOG4359|consensus 99.4 1.7E-12 3.7E-17 89.6 7.3 84 5-95 46-136 (166)
17 KOG0562|consensus 98.4 1.6E-07 3.5E-12 66.6 2.6 86 4-95 13-105 (184)
18 PF02744 GalP_UDP_tr_C: Galact 97.9 8.2E-05 1.8E-09 52.6 8.4 86 4-94 27-119 (166)
19 COG1085 GalT Galactose-1-phosp 97.6 0.00034 7.5E-09 54.6 7.9 82 5-94 200-291 (338)
20 PF04677 CwfJ_C_1: Protein sim 97.3 0.0053 1.1E-07 41.4 9.3 82 3-95 22-108 (121)
21 KOG3969|consensus 96.9 0.0048 1E-07 47.3 7.2 57 33-95 197-256 (310)
22 PLN03103 GDP-L-galactose-hexos 96.4 0.007 1.5E-07 48.4 5.1 62 21-94 174-241 (403)
23 KOG2958|consensus 95.7 0.025 5.4E-07 43.8 5.1 91 3-95 212-309 (354)
24 KOG2720|consensus 91.3 0.18 3.9E-06 40.1 2.7 60 21-93 171-237 (431)
25 COG4360 APA2 ATP adenylyltrans 90.8 0.29 6.4E-06 37.2 3.3 63 21-95 97-163 (298)
26 cd00608 GalT Galactose-1-phosp 89.5 1.2 2.6E-05 34.4 5.9 58 33-95 101-162 (329)
27 COG5075 Uncharacterized conser 87.4 0.62 1.4E-05 35.5 2.9 84 5-94 154-250 (305)
28 COG1085 GalT Galactose-1-phosp 86.0 3.1 6.8E-05 32.8 6.3 57 33-94 102-162 (338)
29 PLN02643 ADP-glucose phosphory 85.9 2.4 5.2E-05 33.0 5.6 57 33-94 115-175 (336)
30 KOG2476|consensus 83.3 6.7 0.00015 32.4 7.2 79 7-95 334-416 (528)
31 PF01087 GalP_UDP_transf: Gala 83.2 4.2 9E-05 28.8 5.4 57 33-94 118-178 (183)
32 PRK05471 CDP-diacylglycerol py 79.1 8.2 0.00018 29.3 6.0 74 11-93 60-144 (252)
33 TIGR00672 cdh CDP-diacylglycer 77.7 8.4 0.00018 29.2 5.7 74 11-93 59-143 (250)
34 KOG2477|consensus 76.6 24 0.00052 29.7 8.4 83 4-95 419-507 (628)
35 PF02611 CDH: CDP-diacylglycer 74.2 9.3 0.0002 28.4 5.1 76 9-93 29-115 (222)
36 PRK11720 galactose-1-phosphate 73.4 11 0.00025 29.5 5.7 57 33-94 113-171 (346)
37 TIGR00209 galT_1 galactose-1-p 68.9 13 0.00028 29.2 5.1 56 33-94 113-171 (347)
38 COG2134 Cdh CDP-diacylglycerol 53.4 40 0.00086 25.3 5.0 48 42-93 93-144 (252)
39 PF12239 DUF3605: Protein of u 35.2 1.1E+02 0.0024 21.4 4.8 23 71-93 133-156 (158)
40 PRK13878 conjugal transfer rel 33.7 71 0.0015 27.9 4.2 36 53-94 84-121 (746)
41 PF03432 Relaxase: Relaxase/Mo 33.3 1.2E+02 0.0025 21.6 4.8 36 53-94 72-109 (242)
42 PF02729 OTCace_N: Aspartate/o 28.7 77 0.0017 21.5 3.1 27 34-65 1-27 (142)
43 PRK13863 type IV secretion sys 27.5 1.5E+02 0.0032 24.4 4.8 36 53-94 96-138 (446)
44 PRK09585 anmK anhydro-N-acetyl 27.4 66 0.0014 25.6 2.8 27 58-88 76-104 (365)
45 PF01446 Rep_1: Replication pr 26.9 2E+02 0.0044 21.2 5.3 40 50-93 40-87 (233)
46 PF04270 Strep_his_triad: Stre 26.2 1.4E+02 0.003 17.2 3.6 36 2-47 8-43 (53)
47 PF13711 DUF4160: Domain of un 24.8 1.1E+02 0.0023 17.9 2.8 24 70-95 1-24 (66)
48 PF01076 Mob_Pre: Plasmid reco 24.0 45 0.00098 23.7 1.3 21 71-95 121-141 (196)
49 COG0434 SgcQ Predicted TIM-bar 23.8 1.1E+02 0.0023 23.4 3.3 31 50-80 68-99 (263)
50 PF08751 TrwC: TrwC relaxase; 23.6 46 0.001 25.4 1.3 9 85-93 159-167 (296)
51 TIGR00259 thylakoid_BtpA membr 23.4 1.1E+02 0.0023 23.2 3.3 31 50-80 62-93 (257)
52 PRK09458 pspB phage shock prot 22.1 1.6E+02 0.0034 18.3 3.3 24 40-65 34-57 (75)
53 PHA02769 hypothetical protein; 20.3 2E+02 0.0043 19.7 3.7 60 12-78 53-120 (154)
No 1
>KOG3275|consensus
Probab=100.00 E-value=2.1e-33 Score=187.24 Aligned_cols=94 Identities=41% Similarity=0.667 Sum_probs=89.5
Q ss_pred CccEEEECCCEEEeccccCCCcCCccee----eccccccccCchhhhHHHHHHHHHHHHHHHHHh-hCCCceEEEEecCc
Q psy5902 5 VENYVCFTDSTVALCWVHGTPPQGNVFV----ANRVSKLQQTIDCERLFHILGHLMIVAKKVAAK-KLIRNYRVVVNNGW 79 (103)
Q Consensus 5 ~~~iv~e~d~~~a~~af~d~~P~~~gH~----k~Hi~~l~~l~~~e~~~~~l~~l~~~a~~v~~~-~~~~g~~i~~n~G~ 79 (103)
|..++||||+++| |+|+.|++|||+ |+|+..+.-+.+.+. ++++++|.++++++++ ++.+|||+++|||+
T Consensus 29 Pa~ii~Edd~~lA---F~Di~Pqap~HfLvIPK~hi~~~s~aed~~~--e~Lg~ll~~~k~vak~~Gl~~gYrvv~NnG~ 103 (127)
T KOG3275|consen 29 PAKIIFEDDRCLA---FHDIAPQAPGHFLVIPKKHITQLSKAEDRDD--ELLGHLLPVAKKVAKALGLEDGYRVVQNNGK 103 (127)
T ss_pred CcceEeeccceEE---EEecCCCCCceEEEeecccccchhhcccCCH--HHHHHHHHHHHHHHHHhCcccceeEEEcCCc
Confidence 4589999999999 999999999999 999988888888777 9999999999999999 89899999999999
Q ss_pred cCCCCcceeeeeeEcCCCCCCCCC
Q psy5902 80 EAVQFSGHLHLHVLGGRPLHWPPG 103 (103)
Q Consensus 80 ~agQ~V~HlHlHvip~~~~~~~~g 103 (103)
.++|||.|+|+||+||++++||||
T Consensus 104 ~g~QsV~HvH~HvlgGrqm~WPpg 127 (127)
T KOG3275|consen 104 DGHQSVYHVHLHVLGGRQMQWPPG 127 (127)
T ss_pred ccceEEEEEEEEEeCCcccCCCCC
Confidence 999999999999999999999997
No 2
>PRK10687 purine nucleoside phosphoramidase; Provisional
Probab=99.96 E-value=1.8e-29 Score=169.84 Aligned_cols=91 Identities=25% Similarity=0.419 Sum_probs=84.6
Q ss_pred cCccEEEECCCEEEeccccCCCcCCccee----eccccccccCchhhhHHHHHHHHHHHHHHHHHh-hC-CCceEEEEec
Q psy5902 4 KVENYVCFTDSTVALCWVHGTPPQGNVFV----ANRVSKLQQTIDCERLFHILGHLMIVAKKVAAK-KL-IRNYRVVVNN 77 (103)
Q Consensus 4 ~~~~iv~e~d~~~a~~af~d~~P~~~gH~----k~Hi~~l~~l~~~e~~~~~l~~l~~~a~~v~~~-~~-~~g~~i~~n~ 77 (103)
.+..+|||||.++| |+|++|.++||+ |+|+++++||++++. +.+.++++.+++++++ .+ ++||++++|+
T Consensus 15 ~p~~~v~edd~~~a---flD~~P~~~GH~LViPK~H~~~l~dl~~~~~--~~l~~l~~~~~~~~~~~~~~~~g~~l~~n~ 89 (119)
T PRK10687 15 IPSDIVYQDELVTA---FRDISPQAPTHILIIPNILIPTVNDVSAEHE--QALGRMITVAAKIAEQEGIAEDGYRLIMNT 89 (119)
T ss_pred CCCCEEEECCCEEE---EEcCCCCCCccEEEEehhHhCChhHCChHHH--HHHHHHHHHHHHHHHHhCCCCCceEEEEeC
Confidence 46789999999999 999999999999 999999999999988 8899999999998876 55 6899999999
Q ss_pred CccCCCCcceeeeeeEcCCCCC
Q psy5902 78 GWEAVQFSGHLHLHVLGGRPLH 99 (103)
Q Consensus 78 G~~agQ~V~HlHlHvip~~~~~ 99 (103)
|+.|||+|+|+|+|||||++++
T Consensus 90 G~~agQ~V~HlHiHvI~g~~~~ 111 (119)
T PRK10687 90 NRHGGQEVYHIHMHLLGGRPLG 111 (119)
T ss_pred CCcCCcccCEEEEEECCCcccC
Confidence 9999999999999999998865
No 3
>COG0537 Hit Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]
Probab=99.94 E-value=4.5e-27 Score=161.60 Aligned_cols=86 Identities=27% Similarity=0.290 Sum_probs=79.1
Q ss_pred CccEEEECCCEEEeccccCCCcCCccee----eccccccccCchhhhHHHHHHHHHHHHHHHHHh---hC-CCceEEEEe
Q psy5902 5 VENYVCFTDSTVALCWVHGTPPQGNVFV----ANRVSKLQQTIDCERLFHILGHLMIVAKKVAAK---KL-IRNYRVVVN 76 (103)
Q Consensus 5 ~~~iv~e~d~~~a~~af~d~~P~~~gH~----k~Hi~~l~~l~~~e~~~~~l~~l~~~a~~v~~~---~~-~~g~~i~~n 76 (103)
++.+||||++++| |+|++|.++||+ |+|+.+++++++++ +.+|+..+++++++ .+ ++|||+++|
T Consensus 14 ~~~~Vye~~~~~a---fld~~P~~~gH~LviPk~h~~~l~~l~~~~-----~~~l~~~~~~ia~al~~~~~~~g~ni~~N 85 (138)
T COG0537 14 PANKVYEDEHVLA---FLDIYPAAPGHTLVIPKRHVSDLEDLDPEE-----LAELFLLAQKIAKALKEAFGADGYNIGIN 85 (138)
T ss_pred CceEEEeCCCEEE---EecCCCCCCCeEEEEeccchhhhhhCCHHH-----HHHHHHHHHHHHHHHHHHhCCCceEEEEe
Confidence 5789999999999 999999999999 99999999999955 58999999999987 34 689999999
Q ss_pred cCccCCCCcceeeeeeEcCCCC
Q psy5902 77 NGWEAVQFSGHLHLHVLGGRPL 98 (103)
Q Consensus 77 ~G~~agQ~V~HlHlHvip~~~~ 98 (103)
+|..|||+|+|+|+|||||+..
T Consensus 86 ~g~~agq~V~HlH~HvIPr~~~ 107 (138)
T COG0537 86 NGKAAGQEVFHLHIHIIPRYKG 107 (138)
T ss_pred cCcccCcCcceEEEEEcCCcCC
Confidence 9999999999999999999864
No 4
>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms []. Crystal structure of rabbit Hint, purified as an adenosine and AMP-binding protein, showed that proteins in the HIT superfamily are conserved as nucleotide-binding proteins and that Hint homologues, which are found in all forms of life, are structurally related to Fhit homologues and GalT-related enzymes, which have more restricted phylogenetic profiles []. Hint homologues including rabbit Hint and yeast Hnt1 hydrolyse adenosine 5' monophosphoramide substrates such as AMP-NH2 and AMP-lysine to AMP plus the amine product and function as positive regulators of Cdk7/Kin28 in vivo []. Fhit homologues are diadenosine polyphosphate hydrolases [] and function as tumour suppressors in human and mouse [] though the tumour suppressing function of Fhit does not depend on ApppA hydrolysis []. The third branch of the HIT superfamily, which includes GalT homologues, contains a related His-X-His-X-Gln motif and transfers nucleoside monophosphate moieties to phosphorylated second substrates rather than hydrolysing them [].; PDB: 3LB5_B 1EMS_A 1Y23_A 3ANO_B 1KPE_B 1KPC_A 4EQE_B 1KPA_A 1KPB_B 4EQG_B ....
Probab=99.93 E-value=5.5e-26 Score=146.68 Aligned_cols=87 Identities=29% Similarity=0.253 Sum_probs=75.9
Q ss_pred CcCccEEEECCCEEEeccccCCCcCCccee----eccccccccCchhhhHHHHHHHHHHHHHHHHHh---hC-CCceEEE
Q psy5902 3 FKVENYVCFTDSTVALCWVHGTPPQGNVFV----ANRVSKLQQTIDCERLFHILGHLMIVAKKVAAK---KL-IRNYRVV 74 (103)
Q Consensus 3 ~~~~~iv~e~d~~~a~~af~d~~P~~~gH~----k~Hi~~l~~l~~~e~~~~~l~~l~~~a~~v~~~---~~-~~g~~i~ 74 (103)
-.++.+|||||.++| |+|.+|.++||+ |+|+.++.||++++ ..+|+..+++++++ .+ ++||++.
T Consensus 3 e~~~~vv~e~~~~~~---~~~~~p~~~gh~LVipk~H~~~l~dl~~~~-----~~~l~~~~~~v~~~l~~~~~~~~~~~~ 74 (98)
T PF01230_consen 3 EIPARVVYEDDHFVA---FLDIFPISPGHLLVIPKRHVESLSDLPPEE-----RAELMQLVQKVAKALKEAFGPDGYNVI 74 (98)
T ss_dssp SSHCEEEEE-SSEEE---EEESSTSSTTEEEEEESSTGSSGGGSHHHH-----HHHHHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCeeEEEECCCEEE---EEcCCCCCCeEEEEEecccccchhcCCHHH-----HHHHHHHHHHHHHHHhcccccceeecc
Confidence 356899999999999 999999999999 99999999999865 47788888888776 34 5899999
Q ss_pred EecCccCCCCcceeeeeeEcCCC
Q psy5902 75 VNNGWEAVQFSGHLHLHVLGGRP 97 (103)
Q Consensus 75 ~n~G~~agQ~V~HlHlHvip~~~ 97 (103)
+|+|+.+||+|+|+|+|||||++
T Consensus 75 ~~~g~~~gq~v~HlH~HviPR~~ 97 (98)
T PF01230_consen 75 INNGPAAGQSVPHLHFHVIPRYK 97 (98)
T ss_dssp EEESGGGTSSSSS-EEEEEEEST
T ss_pred ccchhhhcCccCEEEEEEecccC
Confidence 99999999999999999999975
No 5
>cd01276 PKCI_related Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.
Probab=99.92 E-value=7e-25 Score=142.39 Aligned_cols=86 Identities=35% Similarity=0.534 Sum_probs=80.5
Q ss_pred CccEEEECCCEEEeccccCCCcCCccee----eccccccccCchhhhHHHHHHHHHHHHHHHHHh-hC-CCceEEEEecC
Q psy5902 5 VENYVCFTDSTVALCWVHGTPPQGNVFV----ANRVSKLQQTIDCERLFHILGHLMIVAKKVAAK-KL-IRNYRVVVNNG 78 (103)
Q Consensus 5 ~~~iv~e~d~~~a~~af~d~~P~~~gH~----k~Hi~~l~~l~~~e~~~~~l~~l~~~a~~v~~~-~~-~~g~~i~~n~G 78 (103)
++.+|||||.++| |+|.+|.++||+ |+|++++.||++++. +++.+|++.++++++. +. ++||++++|+|
T Consensus 13 ~~~iv~e~~~~~a---~~~~~p~~~gh~lIiPk~H~~~~~dl~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~n~~~~~g 87 (104)
T cd01276 13 PAKKVYEDDEVLA---FHDINPQAPVHILVIPKKHIASLSDATEEDE--ELLGHLLSAAAKVAKDLGIAEDGYRLVINCG 87 (104)
T ss_pred ccCEEEECCCEEE---EECCCCCCCCEEEEEecceeCChHHcccccH--HHHHHHHHHHHHHHHHhCCCCCCEEEEEeCC
Confidence 4679999999999 999999999999 999999999999998 9999999999989887 54 57999999999
Q ss_pred ccCCCCcceeeeeeEcC
Q psy5902 79 WEAVQFSGHLHLHVLGG 95 (103)
Q Consensus 79 ~~agQ~V~HlHlHvip~ 95 (103)
+.+||+|+|+|+|||+|
T Consensus 88 ~~~g~~v~H~HiHii~~ 104 (104)
T cd01276 88 KDGGQEVFHLHLHLLGG 104 (104)
T ss_pred CCCCCceeEEEEEEeCC
Confidence 99999999999999986
No 6
>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups.
Probab=99.88 E-value=1.1e-22 Score=127.16 Aligned_cols=78 Identities=32% Similarity=0.350 Sum_probs=69.7
Q ss_pred EEECCCEEEeccccCCCcCCccee----eccccccccCchhhhHHHHHHHHHHHHHHHHHh---hC-CCceEEEEecCcc
Q psy5902 9 VCFTDSTVALCWVHGTPPQGNVFV----ANRVSKLQQTIDCERLFHILGHLMIVAKKVAAK---KL-IRNYRVVVNNGWE 80 (103)
Q Consensus 9 v~e~d~~~a~~af~d~~P~~~gH~----k~Hi~~l~~l~~~e~~~~~l~~l~~~a~~v~~~---~~-~~g~~i~~n~G~~ 80 (103)
|||||.++| |.|++|.++||+ |+|+.++.+|++++ +.+++..+++++++ .+ .+||++.+|+|+.
T Consensus 1 ~~e~~~~~a---~~~~~p~~~gh~lIipk~H~~~~~~l~~~~-----~~~l~~~~~~~~~~l~~~~~~~~~~~~~n~g~~ 72 (86)
T cd00468 1 VPDDEHSFA---FVNLKPAAPGHVLVCPKRHVETLPDLDEAL-----LADLVITAQRVAAELEKHGNVPSLTVFVNDGAA 72 (86)
T ss_pred CeecCcEEE---EECCCCCCCCcEEEeCchhhCChhHCCHHH-----HHHHHHHHHHHHHHHHHhcCCCceEEEEcCCcc
Confidence 699999999 999999999999 99999999998855 57777777777765 33 4799999999999
Q ss_pred CCCCcceeeeeeEc
Q psy5902 81 AVQFSGHLHLHVLG 94 (103)
Q Consensus 81 agQ~V~HlHlHvip 94 (103)
+||+|+|+|+||||
T Consensus 73 ~g~~v~H~H~hiiP 86 (86)
T cd00468 73 AGQSVPHVHLHVLP 86 (86)
T ss_pred CCCcCCEEEEEeCC
Confidence 99999999999998
No 7
>cd01275 FHIT FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Fhit plays a very important role in the development of tumours. Infact, Fhit deletions are among the earliest and most frequent genetic alterations in the development of tumours.
Probab=99.88 E-value=4e-22 Score=133.98 Aligned_cols=87 Identities=20% Similarity=0.162 Sum_probs=72.2
Q ss_pred ccEEEECCCEEEeccccCCCcCCccee----eccccccccCchhhhHHHHHHHHHHHHHHHHHhhC-CCceEEEEecCcc
Q psy5902 6 ENYVCFTDSTVALCWVHGTPPQGNVFV----ANRVSKLQQTIDCERLFHILGHLMIVAKKVAAKKL-IRNYRVVVNNGWE 80 (103)
Q Consensus 6 ~~iv~e~d~~~a~~af~d~~P~~~gH~----k~Hi~~l~~l~~~e~~~~~l~~l~~~a~~v~~~~~-~~g~~i~~n~G~~ 80 (103)
+.+|||+|.++| |+|.+|..+||+ |+|+.++.+|++++. ..+..++..+.+..++.+ ++||++++|+|+.
T Consensus 14 ~~iv~e~~~~~~---~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~--~~l~~~~~~v~~~l~~~~~~~~~n~~~~~g~~ 88 (126)
T cd01275 14 NLVFYRTKHSFA---VVNLYPYNPGHVLVVPYRHVPRLEDLTPEEI--ADLFKLVQLAMKALKVVYKPDGFNIGINDGKA 88 (126)
T ss_pred ccEEEeCCCEEE---EEcCCCCCCCcEEEEeccccCChhhCCHHHH--HHHHHHHHHHHHHHHHhcCCCceEEEEeCCcc
Confidence 579999999999 999999999999 999999999999776 444444444333333334 5799999999999
Q ss_pred CCCCcceeeeeeEcCCC
Q psy5902 81 AVQFSGHLHLHVLGGRP 97 (103)
Q Consensus 81 agQ~V~HlHlHvip~~~ 97 (103)
+||+|+|+|+||+||..
T Consensus 89 ~gq~v~H~HiHiiPR~~ 105 (126)
T cd01275 89 GGGIVPHVHIHIVPRWN 105 (126)
T ss_pred cCCCcCEEEEEEeCCcC
Confidence 99999999999999853
No 8
>KOG3379|consensus
Probab=99.87 E-value=3.2e-22 Score=136.91 Aligned_cols=89 Identities=21% Similarity=0.246 Sum_probs=79.0
Q ss_pred CCcCccEEEECCCEEEeccccCCCcCCccee----eccccccccCchhhhHHHHHHHHHHHHHHHHHh---hC-CCceEE
Q psy5902 2 LFKVENYVCFTDSTVALCWVHGTPPQGNVFV----ANRVSKLQQTIDCERLFHILGHLMIVAKKVAAK---KL-IRNYRV 73 (103)
Q Consensus 2 ~~~~~~iv~e~d~~~a~~af~d~~P~~~gH~----k~Hi~~l~~l~~~e~~~~~l~~l~~~a~~v~~~---~~-~~g~~i 73 (103)
+|+++.++|+++.++| |.+++|+.|||+ ++-++++.||+++|. .+|+..++++.+. -+ .+.+++
T Consensus 13 ~i~~~~VFykT~~sfa---fvNlkPvvpgHVLv~P~R~vpRl~dLt~~E~-----aDlF~t~~~v~~~lek~~~~ts~ti 84 (150)
T KOG3379|consen 13 LIPPDHVFYKTKHSFA---FVNLKPVVPGHVLVSPLRVVPRLTDLTAAET-----ADLFTTVQKVQRVLEKHYNATSLTI 84 (150)
T ss_pred cCCcceEEEeccceEE---EEeccccccceEEEeccccccccccCCcHHH-----HHHHHHHHHHHHHHHHHhcccceEE
Confidence 5789999999999999 999999999999 889999999999765 8888888777664 23 457999
Q ss_pred EEecCccCCCCcceeeeeeEcCCCC
Q psy5902 74 VVNNGWEAVQFSGHLHLHVLGGRPL 98 (103)
Q Consensus 74 ~~n~G~~agQ~V~HlHlHvip~~~~ 98 (103)
.+++|+.|||+|||+|+||+||+.-
T Consensus 85 ~iQDG~~AGQTVpHvHvHIlPR~~g 109 (150)
T KOG3379|consen 85 AIQDGPEAGQTVPHVHVHILPRKAG 109 (150)
T ss_pred EeccccccCcccceeEEEEcccccc
Confidence 9999999999999999999998653
No 9
>cd01277 HINT_subgroup HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides. This subgroup includes members from all three forms of cellular life. Although the biochemical function has not been characterised for many of the members of this subgroup, the proteins from Yeast have been shown to be involved in secretion, peroxisome formation and gene expression.
Probab=99.87 E-value=1.3e-21 Score=126.28 Aligned_cols=82 Identities=27% Similarity=0.275 Sum_probs=72.1
Q ss_pred ccEEEECCCEEEeccccCCCcCCccee----eccccccccCchhhhHHHHHHHHHHHHHHHHHh---hC-CCceEEEEec
Q psy5902 6 ENYVCFTDSTVALCWVHGTPPQGNVFV----ANRVSKLQQTIDCERLFHILGHLMIVAKKVAAK---KL-IRNYRVVVNN 77 (103)
Q Consensus 6 ~~iv~e~d~~~a~~af~d~~P~~~gH~----k~Hi~~l~~l~~~e~~~~~l~~l~~~a~~v~~~---~~-~~g~~i~~n~ 77 (103)
..+|+|+|.++| |.+..|..|||+ |+|+.++.||++++. .++...+++++++ .+ ++|||+.+|+
T Consensus 14 ~~iv~e~~~~~a---~~~~~~~~pg~~lI~Pk~H~~~~~~l~~~e~-----~~l~~~~~~v~~~l~~~~~~~~~n~~~~~ 85 (103)
T cd01277 14 SYKVYEDDHVLA---FLDINPASKGHTLVIPKKHYENLLDLDPEEL-----AELILAAKKVARALKKALKADGLNILQNN 85 (103)
T ss_pred CCEEEeCCCEEE---EECCCCCCCeeEEEEeccccCChhhCCHHHH-----HHHHHHHHHHHHHHHHhcCCCceEEEEeC
Confidence 469999999999 999999999999 999999999999765 5666666666655 34 5799999999
Q ss_pred CccCCCCcceeeeeeEcC
Q psy5902 78 GWEAVQFSGHLHLHVLGG 95 (103)
Q Consensus 78 G~~agQ~V~HlHlHvip~ 95 (103)
|+.+||+++|+|+||+||
T Consensus 86 ~~~~g~~~~H~HiHiiPR 103 (103)
T cd01277 86 GRAAGQVVFHVHVHVIPR 103 (103)
T ss_pred CcccCcccCEEEEEEccC
Confidence 999999999999999997
No 10
>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome. All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin.
Probab=99.85 E-value=6.8e-21 Score=123.85 Aligned_cols=83 Identities=19% Similarity=0.249 Sum_probs=74.8
Q ss_pred CccEEEECCCEEEeccccCCCcCCccee----eccccccccCchhhhHHHHHHHHHHHHHHHHHh--hC-CCceEEEEec
Q psy5902 5 VENYVCFTDSTVALCWVHGTPPQGNVFV----ANRVSKLQQTIDCERLFHILGHLMIVAKKVAAK--KL-IRNYRVVVNN 77 (103)
Q Consensus 5 ~~~iv~e~d~~~a~~af~d~~P~~~gH~----k~Hi~~l~~l~~~e~~~~~l~~l~~~a~~v~~~--~~-~~g~~i~~n~ 77 (103)
.+++|+|||.++| |.|.+|.++||+ |+|+.++.+|++++. +.++++++.+.+..++ .+ ++|||+++|.
T Consensus 15 ~~~iv~~~~~~~a---~~~~~p~~~~h~lIiPk~h~~~~~~l~~~~~--~~l~~~~~~~~~~l~~~~~~~~~~~n~g~h~ 89 (104)
T cd01278 15 PEDQVYEDDRVVV---FKDIYPKARHHYLVIPKEHIASLKALTKEDV--PLLEHMETVGREKLLRSDNTDPSEFRFGFHA 89 (104)
T ss_pred CccEEEeCCCEEE---EECCCCCCCceEEEEecCCCCChHHCCHhHH--HHHHHHHHHHHHHHHHHcCCCccCeEEEeCC
Confidence 5789999999999 999999999999 999999999999988 8999999988885544 35 5799999999
Q ss_pred CccCCCCcceeeeeeEc
Q psy5902 78 GWEAVQFSGHLHLHVLG 94 (103)
Q Consensus 78 G~~agQ~V~HlHlHvip 94 (103)
|+. |+|+|+|+|||.
T Consensus 90 ~p~--~~v~H~H~Hvi~ 104 (104)
T cd01278 90 PPF--TSVSHLHLHVIA 104 (104)
T ss_pred CCC--cCeeeEEEEeeC
Confidence 996 999999999984
No 11
>PF11969 DcpS_C: Scavenger mRNA decapping enzyme C-term binding; PDB: 1VLR_B 1XMM_D 1XML_B 1ST0_A 3BLA_B 3BL9_B 3BL7_B 1ST4_B 1XQU_B.
Probab=99.69 E-value=3.3e-17 Score=109.52 Aligned_cols=84 Identities=20% Similarity=0.243 Sum_probs=66.3
Q ss_pred cCccEEEECCCEEEeccccCCCcCCccee----ec-cccccccCchhhhHHHHHHHHHHHHHHHHHh-h---C-CCceEE
Q psy5902 4 KVENYVCFTDSTVALCWVHGTPPQGNVFV----AN-RVSKLQQTIDCERLFHILGHLMIVAKKVAAK-K---L-IRNYRV 73 (103)
Q Consensus 4 ~~~~iv~e~d~~~a~~af~d~~P~~~gH~----k~-Hi~~l~~l~~~e~~~~~l~~l~~~a~~v~~~-~---~-~~g~~i 73 (103)
.+++++||||.+++ |.|++|.++.|+ |+ |+.++.+|+.++. +++.+|.+.++++++. . . ...+++
T Consensus 12 ~~~~vly~d~~~v~---~~D~~P~a~~H~LviPk~~~i~sl~~L~~~~~--~lL~~m~~~~~~~~~~~~~~~~~~~~~~~ 86 (116)
T PF11969_consen 12 EPERVLYEDDDFVV---FKDIYPKAPVHLLVIPKDPHIRSLRDLTPEHL--PLLERMREVARELLKEEYPGDLDSDDIRL 86 (116)
T ss_dssp SGGGESEEETSEEE---EE-TT-SCCEEEEEEESSSS-SSGGG--GGGH--HHHHHHHHHHHHHHHHHH-TT-EGGGEEE
T ss_pred CCCcEEEEeCCEEE---eeCCCCCcCcEEEEEeecCCCCChHHcCHHHH--HHHHHHHHHHHHHHHHhcccccchhhhcc
Confidence 47799999999999 999999999999 77 9999999999998 9999999999999987 3 2 245777
Q ss_pred EEecCccCCCCcceeeeeeEcCC
Q psy5902 74 VVNNGWEAVQFSGHLHLHVLGGR 96 (103)
Q Consensus 74 ~~n~G~~agQ~V~HlHlHvip~~ 96 (103)
+++ +.+|+.|||+||++..
T Consensus 87 gfH----~~PS~~HLHlHvi~~~ 105 (116)
T PF11969_consen 87 GFH----YPPSVYHLHLHVISPD 105 (116)
T ss_dssp EEE----SS-SSSS-EEEEEETT
T ss_pred ccc----CCCCcceEEEEEccCC
Confidence 665 4569999999999853
No 12
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=99.60 E-value=5e-15 Score=114.90 Aligned_cols=83 Identities=19% Similarity=0.093 Sum_probs=70.8
Q ss_pred ccEEEECCCEEEeccccCCCcCCccee----eccccccccCchhhhHHHHHHHHHHHHHHHHHh---hC-CC-ceEEEEe
Q psy5902 6 ENYVCFTDSTVALCWVHGTPPQGNVFV----ANRVSKLQQTIDCERLFHILGHLMIVAKKVAAK---KL-IR-NYRVVVN 76 (103)
Q Consensus 6 ~~iv~e~d~~~a~~af~d~~P~~~gH~----k~Hi~~l~~l~~~e~~~~~l~~l~~~a~~v~~~---~~-~~-g~~i~~n 76 (103)
+.+|+|||.++| |.|.+|.+|||+ |+|+.++.+|++++. .+|...+++++++ .+ .+ +|++++|
T Consensus 210 ~RiV~End~fvA---f~p~~p~~P~h~lIiPKrH~~~~~dl~dee~-----~~La~~lk~v~~~l~~~~~~~~pyn~~~h 281 (346)
T PRK11720 210 ERIVVETEHWLA---VVPYWAAWPFETLLLPKAHVLRLTDLTDAQR-----DDLALALKKLTSRYDNLFQCSFPYSMGWH 281 (346)
T ss_pred CeEEEECCCEEE---EeccccCCCCeEEEecccCCCChhhCCHHHH-----HHHHHHHHHHHHHHHHHhCCCCCCceeEE
Confidence 589999999999 999999999999 999999999999664 6677777777765 34 33 6999999
Q ss_pred cCccCC--CCcceeeeeeEcCC
Q psy5902 77 NGWEAV--QFSGHLHLHVLGGR 96 (103)
Q Consensus 77 ~G~~ag--Q~V~HlHlHvip~~ 96 (103)
.++.+| |+++|+|+||+||.
T Consensus 282 ~~p~~~~~~~~~H~HihiiPrl 303 (346)
T PRK11720 282 GAPFNGEENDHWQLHAHFYPPL 303 (346)
T ss_pred ecccCCCCCeeEEEEEEEeCCc
Confidence 999654 67999999999983
No 13
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
Probab=99.59 E-value=6.4e-15 Score=113.26 Aligned_cols=84 Identities=21% Similarity=0.157 Sum_probs=69.6
Q ss_pred ccEEEECCCEEEeccccCCCcCCccee----eccccccccCchhhhHHHHHHHHHHHHHHHHHh---hC--CCceEEEEe
Q psy5902 6 ENYVCFTDSTVALCWVHGTPPQGNVFV----ANRVSKLQQTIDCERLFHILGHLMIVAKKVAAK---KL--IRNYRVVVN 76 (103)
Q Consensus 6 ~~iv~e~d~~~a~~af~d~~P~~~gH~----k~Hi~~l~~l~~~e~~~~~l~~l~~~a~~v~~~---~~--~~g~~i~~n 76 (103)
+.+|||||.++| |.+..|..|+|+ |+|+.++.+|++++. .+|...+++++++ .+ +.+|++++|
T Consensus 200 ~riV~end~~va---~~p~~~~~P~e~lIiPKrH~~~~~dl~~~e~-----~~La~~l~~v~~~l~~~~~~~~pyn~~~h 271 (329)
T cd00608 200 ERIVVENEHFVA---VVPFWARWPFEVHILPKRHVSRFTDLTDEER-----EDLAEILKRLLARYDNLFNCSFPYSMGWH 271 (329)
T ss_pred CeEEEeCCCEEE---EEecCCCCCcEEEEecCCCcCChhHCCHHHH-----HHHHHHHHHHHHHHHHHhCCCCCeEEEEe
Confidence 589999999999 999999999999 999999999999775 4555555555543 23 358999999
Q ss_pred cCccCC----CCcceeeeeeEcCCC
Q psy5902 77 NGWEAV----QFSGHLHLHVLGGRP 97 (103)
Q Consensus 77 ~G~~ag----Q~V~HlHlHvip~~~ 97 (103)
.++.+| |+++|+|+|++||+.
T Consensus 272 ~~P~~~~~~~~~~~H~Hihi~Pr~~ 296 (329)
T cd00608 272 QAPTGGKELENWYYHWHFEIPPRRS 296 (329)
T ss_pred ccCCCCCcCCcceEEEEEEeCCCcC
Confidence 998764 799999999999853
No 14
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=99.58 E-value=1e-14 Score=113.25 Aligned_cols=84 Identities=18% Similarity=0.089 Sum_probs=71.4
Q ss_pred CccEEEECCCEEEeccccCCCcCCccee----eccccccccCchhhhHHHHHHHHHHHHHHHHHh---hC-CC-ceEEEE
Q psy5902 5 VENYVCFTDSTVALCWVHGTPPQGNVFV----ANRVSKLQQTIDCERLFHILGHLMIVAKKVAAK---KL-IR-NYRVVV 75 (103)
Q Consensus 5 ~~~iv~e~d~~~a~~af~d~~P~~~gH~----k~Hi~~l~~l~~~e~~~~~l~~l~~~a~~v~~~---~~-~~-g~~i~~ 75 (103)
.+.+|||||.++| |+|.+|.+|||+ |+|+.++.+|++++. .+|...+++++++ .+ .+ +||+++
T Consensus 209 ~~riV~End~fvA---f~p~~p~~Pgh~lIiPKrH~~~~~dl~d~e~-----~~La~~lk~v~~~l~~~~~~~~pYn~~~ 280 (347)
T TIGR00209 209 KSRTVVETEHWIA---VVPYWAIWPFETLLLPKAHVLRITDLTDAQR-----SDLALILKKLTSKYDNLFETSFPYSMGW 280 (347)
T ss_pred CCeEEEECCCEEE---EeccCCCCCCeEEEeeccCCCChhhCCHHHH-----HHHHHHHHHHHHHHHHHhCCCCCcceeE
Confidence 4689999999999 999999999999 999999999999664 6777777777765 34 33 799999
Q ss_pred ecCccCCC--CcceeeeeeEcCC
Q psy5902 76 NNGWEAVQ--FSGHLHLHVLGGR 96 (103)
Q Consensus 76 n~G~~agQ--~V~HlHlHvip~~ 96 (103)
|.++.+|| ..+|+|+||+||.
T Consensus 281 h~~p~~~~~~~~~H~HihiiPrl 303 (347)
T TIGR00209 281 HGAPFNGEENQHWQLHAHFYPPL 303 (347)
T ss_pred EecccCCCCCcEEEEEEEEeCCc
Confidence 99999887 5567999999984
No 15
>PLN02643 ADP-glucose phosphorylase
Probab=99.50 E-value=1.3e-13 Score=106.57 Aligned_cols=82 Identities=12% Similarity=0.026 Sum_probs=66.7
Q ss_pred EEEECCCEEEeccccCCCcCCccee----eccccccccCchhhhHHHHHHHHHHHHHHHHHh---hC-CCceEEEEecCc
Q psy5902 8 YVCFTDSTVALCWVHGTPPQGNVFV----ANRVSKLQQTIDCERLFHILGHLMIVAKKVAAK---KL-IRNYRVVVNNGW 79 (103)
Q Consensus 8 iv~e~d~~~a~~af~d~~P~~~gH~----k~Hi~~l~~l~~~e~~~~~l~~l~~~a~~v~~~---~~-~~g~~i~~n~G~ 79 (103)
+|+|||.++| |.+..|..|+|+ |+|+.++.+|++++. .+|....++++++ .+ .++||+++|+|+
T Consensus 211 iV~en~~f~A---f~p~ap~~P~evlIiPKrH~~~~~dl~~~e~-----~~La~ilk~v~~~l~~~~~~~pyN~~~~~~P 282 (336)
T PLN02643 211 LIDESSHFVS---IAPFAATFPFEIWIIPRDHSSNFHEIDDDKA-----VDLGGLLKLMLQKISKQLNDPPYNYMIQTSP 282 (336)
T ss_pred EEEeCCCEEE---EeccccCCCCEEEEEeccccCChhhCCHHHH-----HHHHHHHHHHHHHHHHhcCCCCceeeeecCC
Confidence 8999999999 999999999999 999999999999765 5555556666554 23 358999999999
Q ss_pred c--CCCCc--ceeeeeeEcCCC
Q psy5902 80 E--AVQFS--GHLHLHVLGGRP 97 (103)
Q Consensus 80 ~--agQ~V--~HlHlHvip~~~ 97 (103)
. ++|.+ .|+|+|++||..
T Consensus 283 ~~~~~~~~~~~H~hihi~PRl~ 304 (336)
T PLN02643 283 LGVEESNLPYTHWFLQIVPQLS 304 (336)
T ss_pred CccccCcccceEEEEEEecCcC
Confidence 7 46655 566679999853
No 16
>KOG4359|consensus
Probab=99.38 E-value=1.7e-12 Score=89.64 Aligned_cols=84 Identities=17% Similarity=0.237 Sum_probs=74.6
Q ss_pred CccEEEECCCEEEeccccCCCcCCccee----eccccccccCchhhhHHHHHHHHHHHHHHHHHh-hC--CCceEEEEec
Q psy5902 5 VENYVCFTDSTVALCWVHGTPPQGNVFV----ANRVSKLQQTIDCERLFHILGHLMIVAKKVAAK-KL--IRNYRVVVNN 77 (103)
Q Consensus 5 ~~~iv~e~d~~~a~~af~d~~P~~~gH~----k~Hi~~l~~l~~~e~~~~~l~~l~~~a~~v~~~-~~--~~g~~i~~n~ 77 (103)
++-...|||.+++ |.|++|.+.-|+ |+|+.+..+|+.++- +++..|+.+.+.+.++ .. ++..+++++.
T Consensus 46 ~ell~~En~~~V~---fkDikPaA~~HYLvipK~Hi~~~~~L~k~~V--~Lve~m~~~G~~~l~r~~~td~~~~r~GFHL 120 (166)
T KOG4359|consen 46 TELLHCENEDLVC---FKDIKPAATHHYLVVPKKHIGNCRTLRKDQV--ELVENMVTVGKTILERNNFTDFTNVRMGFHL 120 (166)
T ss_pred CceeEecCCcEEE---EecCCccccceEEEechHHcCChhhcchhhH--HHHHHHHHHHHHHHHHhccCCchheeEeccC
Confidence 4556789999999 999999999999 999999999999887 9999999999999887 22 4678999999
Q ss_pred CccCCCCcceeeeeeEcC
Q psy5902 78 GWEAVQFSGHLHLHVLGG 95 (103)
Q Consensus 78 G~~agQ~V~HlHlHvip~ 95 (103)
.|. -||.|+|+|+|..
T Consensus 121 PPf--~SV~HLHlH~I~P 136 (166)
T KOG4359|consen 121 PPF--CSVSHLHLHVIAP 136 (166)
T ss_pred CCc--ceeeeeeEeeecc
Confidence 996 8999999999953
No 17
>KOG0562|consensus
Probab=98.41 E-value=1.6e-07 Score=66.58 Aligned_cols=86 Identities=20% Similarity=0.225 Sum_probs=62.0
Q ss_pred cCccEEEEC-CCEEEeccccCCCcCCccee-----eccccccccCchhhhHHHHHHHHHHHHHHHHHh-hCCCceEEEEe
Q psy5902 4 KVENYVCFT-DSTVALCWVHGTPPQGNVFV-----ANRVSKLQQTIDCERLFHILGHLMIVAKKVAAK-KLIRNYRVVVN 76 (103)
Q Consensus 4 ~~~~iv~e~-d~~~a~~af~d~~P~~~gH~-----k~Hi~~l~~l~~~e~~~~~l~~l~~~a~~v~~~-~~~~g~~i~~n 76 (103)
++++++.|+ |.+++ +.|.+|.++.|+ +.-|+++++...++. +++.++..++..+... .- .+....++
T Consensus 13 k~e~V~~es~d~vvv---IrD~fPKa~~H~LvLpr~s~i~~l~~~~qe~l--~ll~~~h~~~~~~v~~~~~-~~~~~~f~ 86 (184)
T KOG0562|consen 13 KPENVYIESPDDVVV---IRDKFPKARMHLLVLPRRSSIDSLFSVVQEHL--SLLKEDHAVGPCWVDQLTN-EALCNYFR 86 (184)
T ss_pred ccceeeccCcccEEE---EcccCccceeEEEEecccchhHHHHHHHHHHh--hHhHHHhhcCchHHHHhcc-hhhhhhee
Confidence 456666677 79999 999999999998 556777777777766 7777777766555443 11 11223344
Q ss_pred cCccCCCCcceeeeeeEcC
Q psy5902 77 NGWEAVQFSGHLHLHVLGG 95 (103)
Q Consensus 77 ~G~~agQ~V~HlHlHvip~ 95 (103)
.|..|+.|+.++|+|||..
T Consensus 87 vG~HavPSM~~LHLHVISk 105 (184)
T KOG0562|consen 87 VGFHAVPSMNNLHLHVISK 105 (184)
T ss_pred eeeccCcchhheeEEEeec
Confidence 4677888999999999984
No 18
>PF02744 GalP_UDP_tr_C: Galactose-1-phosphate uridyl transferase, C-terminal domain; InterPro: IPR005850 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C.
Probab=97.95 E-value=8.2e-05 Score=52.59 Aligned_cols=86 Identities=19% Similarity=0.137 Sum_probs=43.6
Q ss_pred cCccEEEECCCEEEeccccCCCcCCccee-eccccccccCchhhhHHHHHHHHHHHHHHHHHh---hC--CCceEEEEec
Q psy5902 4 KVENYVCFTDSTVALCWVHGTPPQGNVFV-ANRVSKLQQTIDCERLFHILGHLMIVAKKVAAK---KL--IRNYRVVVNN 77 (103)
Q Consensus 4 ~~~~iv~e~d~~~a~~af~d~~P~~~gH~-k~Hi~~l~~l~~~e~~~~~l~~l~~~a~~v~~~---~~--~~g~~i~~n~ 77 (103)
+.+++|+++|++++++-+.-.+|..--=+ |+|+.++.+++++|. .++....+.+++. .+ +.-|+++++.
T Consensus 27 ~~~Riv~en~~f~a~vP~~a~wP~ev~ilpkrh~~~l~~l~~~E~-----~dlA~~l~~i~~r~d~lf~~~~pY~m~ihq 101 (166)
T PF02744_consen 27 EGERIVYENEHFVAFVPFAARWPFEVWILPKRHVPSLADLTDEER-----DDLAAILKPILRRYDNLFETSFPYNMGIHQ 101 (166)
T ss_dssp H-TTEEEE-SSEEEE--TT--STT-EEEEESS--SSGGG--HHHH-----HHHHHHHHHHHHHHHHHCTS---EEEEEE-
T ss_pred CCCEEEEECCceEEEEECcccCCcEEEEecCCChhhHHHhhhHHH-----hhHHHHHHHHHHHhcccCCCCCCCchhhhc
Confidence 35789999999999444444444433222 999999999999776 4444455555554 23 3479999988
Q ss_pred CccCCCCcce-eeeeeEc
Q psy5902 78 GWEAVQFSGH-LHLHVLG 94 (103)
Q Consensus 78 G~~agQ~V~H-lHlHvip 94 (103)
.|..+..-.| +|+|+-|
T Consensus 102 aP~~~~~~~~~fH~H~e~ 119 (166)
T PF02744_consen 102 APVNGEDPEHWFHPHFEP 119 (166)
T ss_dssp --SSSS--TT--EEEEE-
T ss_pred CCCCcccchhhhhccccc
Confidence 8886665422 5555544
No 19
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=97.61 E-value=0.00034 Score=54.61 Aligned_cols=82 Identities=24% Similarity=0.132 Sum_probs=59.9
Q ss_pred CccEEEECCCEEEeccccCCCcCCccee----eccccccccCchhhhHHHHHHHHHHHHHHHHHh--h-CCCc--eEEEE
Q psy5902 5 VENYVCFTDSTVALCWVHGTPPQGNVFV----ANRVSKLQQTIDCERLFHILGHLMIVAKKVAAK--K-LIRN--YRVVV 75 (103)
Q Consensus 5 ~~~iv~e~d~~~a~~af~d~~P~~~gH~----k~Hi~~l~~l~~~e~~~~~l~~l~~~a~~v~~~--~-~~~g--~~i~~ 75 (103)
-+++|+|+|.++| |..-.+..|-++ |+|+.++.++++++ +.+|-...+.+... + +..+ |++.+
T Consensus 200 ~~R~v~e~~~~~a---~~Pf~a~~pfEv~i~pk~hv~~l~~~sdee-----~~~lA~ilk~~~~~y~~~~~~~fpY~m~~ 271 (338)
T COG1085 200 GERIVVENDHFLA---FVPFWARWPFEVLIYPKEHVSFLTDLSDEE-----LKDLAEILKKLLARYDNLFGNSFPYSMGF 271 (338)
T ss_pred CceEEecCceeEE---eccccccCceEEEeccHHHhhhhhhCCHHH-----HHHHHHHHHHHHHHHhhccCCCCceeeee
Confidence 4689999999999 666556666555 99999999999965 46666666666665 2 2333 88877
Q ss_pred ecCccC-CCCcceeeeeeEc
Q psy5902 76 NNGWEA-VQFSGHLHLHVLG 94 (103)
Q Consensus 76 n~G~~a-gQ~V~HlHlHvip 94 (103)
..-+.. .+.-.|+|+|++|
T Consensus 272 h~ap~~~~~~~~~~h~~~~p 291 (338)
T COG1085 272 HQAPFNEVNEHYHLHAEIYP 291 (338)
T ss_pred ecCCCCcccccceEEEEEcc
Confidence 655542 3556799999999
No 20
>PF04677 CwfJ_C_1: Protein similar to CwfJ C-terminus 1; InterPro: IPR006768 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues. Cwf19 is part of the Cdc5p complex involved in mRNA splicing []. This domain is found in association with IPR006767 from INTERPRO, which is generally C-terminal and adjacent to this domain.
Probab=97.26 E-value=0.0053 Score=41.35 Aligned_cols=82 Identities=10% Similarity=-0.003 Sum_probs=56.0
Q ss_pred CcCccEEEECCCEEEeccccCCCcCCccee----eccccccccCchhhhHHHHHHHHHHHHHHHHHhhCCCceE-EEEec
Q psy5902 3 FKVENYVCFTDSTVALCWVHGTPPQGNVFV----ANRVSKLQQTIDCERLFHILGHLMIVAKKVAAKKLIRNYR-VVVNN 77 (103)
Q Consensus 3 ~~~~~iv~e~d~~~a~~af~d~~P~~~gH~----k~Hi~~l~~l~~~e~~~~~l~~l~~~a~~v~~~~~~~g~~-i~~n~ 77 (103)
++...||.-.+.++. -+...|..+||+ -.|+.++.+++++.+ +.+.......+++.++ .+.+.- +-.+
T Consensus 22 ~~khliisiG~~~YL---alpkg~L~~gH~lIvPi~H~~s~~~~de~~~--~Ei~~f~~~L~~mf~~-~~~~vvf~E~~- 94 (121)
T PF04677_consen 22 VEKHLIISIGDEVYL---ALPKGPLVPGHCLIVPIQHVPSLTELDEEVW--EEIRNFQKSLRKMFAS-QGKDVVFFERV- 94 (121)
T ss_pred ccceEEEEEcCcEEE---EeCCCCccCCEEEEEecceecccccCCHHHH--HHHHHHHHHHHHHHHH-cCCCEEEEEEe-
Confidence 345678888888888 677799999999 999999999998766 5555544444444333 111221 1121
Q ss_pred CccCCCCcceeeeeeEcC
Q psy5902 78 GWEAVQFSGHLHLHVLGG 95 (103)
Q Consensus 78 G~~agQ~V~HlHlHvip~ 95 (103)
...-.|+|+.+||=
T Consensus 95 ----~~~~~H~~iq~vPv 108 (121)
T PF04677_consen 95 ----RKRNPHTHIQCVPV 108 (121)
T ss_pred ----CCCCcEEEEEEEEc
Confidence 35678999999993
No 21
>KOG3969|consensus
Probab=96.92 E-value=0.0048 Score=47.26 Aligned_cols=57 Identities=11% Similarity=0.187 Sum_probs=46.6
Q ss_pred eccccccccCchhhhHHHHHHHHHHHHHHHHHh--hC-CCceEEEEecCccCCCCcceeeeeeEcC
Q psy5902 33 ANRVSKLQQTIDCERLFHILGHLMIVAKKVAAK--KL-IRNYRVVVNNGWEAVQFSGHLHLHVLGG 95 (103)
Q Consensus 33 k~Hi~~l~~l~~~e~~~~~l~~l~~~a~~v~~~--~~-~~g~~i~~n~G~~agQ~V~HlHlHvip~ 95 (103)
|+-+.++.||.+++. ++|..+-..++.+... ++ ++-.++.++= -.|-.|+|+|+++-
T Consensus 197 r~dikSiRDL~~~h~--~lL~n~r~k~~~~i~~~y~v~~dqlrmf~HY----qPSyYHlHVHi~ni 256 (310)
T KOG3969|consen 197 RRDIKSIRDLRPSHL--QLLRNIRNKSREAIPQRYGVDPDQLRMFFHY----QPSYYHLHVHIVNI 256 (310)
T ss_pred cCCcchhhhCCHHHH--HHHHHHHHHHHHHHHHHhCCCchhEEEEEEe----cCceEEEEEEEEec
Confidence 889999999999988 8888888888887766 55 5678887764 34788999999983
No 22
>PLN03103 GDP-L-galactose-hexose-1-phosphate guanyltransferase; Provisional
Probab=96.39 E-value=0.007 Score=48.40 Aligned_cols=62 Identities=19% Similarity=0.131 Sum_probs=41.1
Q ss_pred ccCCCcCCccee------eccccccccCchhhhHHHHHHHHHHHHHHHHHhhCCCceEEEEecCccCCCCcceeeeeeEc
Q psy5902 21 VHGTPPQGNVFV------ANRVSKLQQTIDCERLFHILGHLMIVAKKVAAKKLIRNYRVVVNNGWEAVQFSGHLHLHVLG 94 (103)
Q Consensus 21 f~d~~P~~~gH~------k~Hi~~l~~l~~~e~~~~~l~~l~~~a~~v~~~~~~~g~~i~~n~G~~agQ~V~HlHlHvip 94 (103)
+.+.+|+.+||+ +.|.+..- +. +++..+-.++...-..+|+++.|. .-|.-+|.|+|+|..-
T Consensus 174 lINvsPI~~gH~LlvP~~~~~lPQ~i--~~---------~~l~la~~~a~~~~~p~frvgYNS-lGA~ASvNHLHFQa~y 241 (403)
T PLN03103 174 AINVSPIEYGHVLLVPRVLDCLPQRI--DP---------DSFLLALYMAAEANNPYFRVGYNS-LGAFATINHLHFQAYY 241 (403)
T ss_pred EEeCCCCccCeEEEcCCcccCCCeEe--cH---------HHHHHHHHHHHhcCCCcEEEEecC-CccccCcceeeeeecc
Confidence 677899999996 45554332 22 233444445543223579999986 5556699999999875
No 23
>KOG2958|consensus
Probab=95.68 E-value=0.025 Score=43.85 Aligned_cols=91 Identities=16% Similarity=0.176 Sum_probs=58.9
Q ss_pred CcCccEEEECCCEEEeccccCCCcCCccee-eccccccccCchhhhHHHHHHHHHH-HHHHHHHh-hCCCceEEEEecCc
Q psy5902 3 FKVENYVCFTDSTVALCWVHGTPPQGNVFV-ANRVSKLQQTIDCERLFHILGHLMI-VAKKVAAK-KLIRNYRVVVNNGW 79 (103)
Q Consensus 3 ~~~~~iv~e~d~~~a~~af~d~~P~~~gH~-k~Hi~~l~~l~~~e~~~~~l~~l~~-~a~~v~~~-~~~~g~~i~~n~G~ 79 (103)
.+.+++|.|+|++++|+=|-.++|.-.-=+ |+|++++.+|++.+. ..|+.+++ +..++.+. ...--|+++++..|
T Consensus 212 l~Kervv~enehfivvvPywA~wPfEtllipk~h~~~~~~l~~~~k--~dLasiLK~ll~KydnlfetsfPYsmg~h~aP 289 (354)
T KOG2958|consen 212 LEKERVVVENEHFIVVVPYWATWPFETLLIPKRHVSRFHELDEVEK--VDLASILKLLLIKYDNLFETSFPYSMGIHGAP 289 (354)
T ss_pred hhhceEEeecCceEEEeehhhcCcceeeeechhhhhhhcccchHHH--hhHHHHHHHHHHHHHHhhccCCccccccccCC
Confidence 467899999999999666666667655555 999999999998776 55555444 23344433 11124667665444
Q ss_pred cC--CCCc-ce-eeeeeEcC
Q psy5902 80 EA--VQFS-GH-LHLHVLGG 95 (103)
Q Consensus 80 ~a--gQ~V-~H-lHlHvip~ 95 (103)
-. +|.. .| +|+|..|.
T Consensus 290 l~~t~~e~~n~W~h~hFypp 309 (354)
T KOG2958|consen 290 LGSTEQENYNHWLHMHFYPP 309 (354)
T ss_pred cccccccccchhhhhhcccc
Confidence 32 2332 23 69998884
No 24
>KOG2720|consensus
Probab=91.34 E-value=0.18 Score=40.05 Aligned_cols=60 Identities=18% Similarity=0.198 Sum_probs=35.4
Q ss_pred ccCCCcCCccee-------eccccccccCchhhhHHHHHHHHHHHHHHHHHhhCCCceEEEEecCccCCCCcceeeeeeE
Q psy5902 21 VHGTPPQGNVFV-------ANRVSKLQQTIDCERLFHILGHLMIVAKKVAAKKLIRNYRVVVNNGWEAVQFSGHLHLHVL 93 (103)
Q Consensus 21 f~d~~P~~~gH~-------k~Hi~~l~~l~~~e~~~~~l~~l~~~a~~v~~~~~~~g~~i~~n~G~~agQ~V~HlHlHvi 93 (103)
..+..|...||+ |.+-..+. .+-+..|-.++...-++-|+++.|. .-|.-||.|||+|..
T Consensus 171 aIN~sPie~~H~LiiP~V~kc~pQrit------------~~al~lav~~m~~~dd~~frlgyNS-lga~AsVNHLHfha~ 237 (431)
T KOG2720|consen 171 AINVSPIEYGHVLIIPRVLKCLPQRIT------------HKALLLAVTMMAEADDPYFRLGYNS-LGAFASVNHLHFHAY 237 (431)
T ss_pred EEecCccccCcEEEecchhccCcceee------------HHHHHHHHHHHHhcCCchhheeccc-chhhhhhhhhhhhhh
Confidence 355779999998 33332221 1122233333332112458888886 345789999999986
No 25
>COG4360 APA2 ATP adenylyltransferase (5',5'''-P-1,P-4-tetraphosphate phosphorylase II) [Nucleotide transport and metabolism]
Probab=90.84 E-value=0.29 Score=37.16 Aligned_cols=63 Identities=16% Similarity=0.109 Sum_probs=42.0
Q ss_pred ccCCCcCCccee---ecccccccc-CchhhhHHHHHHHHHHHHHHHHHhhCCCceEEEEecCccCCCCcceeeeeeEcC
Q psy5902 21 VHGTPPQGNVFV---ANRVSKLQQ-TIDCERLFHILGHLMIVAKKVAAKKLIRNYRVVVNNGWEAVQFSGHLHLHVLGG 95 (103)
Q Consensus 21 f~d~~P~~~gH~---k~Hi~~l~~-l~~~e~~~~~l~~l~~~a~~v~~~~~~~g~~i~~n~G~~agQ~V~HlHlHvip~ 95 (103)
+++.+|+.+-|+ .+..++-.+ |+. ++++.+- ++.. ++ +|. +..|.|+.||-|-+|-|+-++|-
T Consensus 97 llNKF~VVdeHlLiVTrefedQ~s~LTl--------~Df~ta~-~vL~-~l-dgl-vFYNsGp~aGaSq~HkHLQi~pm 163 (298)
T COG4360 97 LLNKFPVVDEHLLIVTREFEDQESALTL--------ADFTTAY-AVLC-GL-DGL-VFYNSGPIAGASQDHKHLQIVPM 163 (298)
T ss_pred hhhcCCcccceeEEeehhhhhccccCCH--------HHHHHHH-HHHh-cc-cce-EEecCCCCcCcCCCccceeEeec
Confidence 688899999998 444444433 344 3333222 2221 22 463 56899999999999999999983
No 26
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
Probab=89.52 E-value=1.2 Score=34.38 Aligned_cols=58 Identities=12% Similarity=0.021 Sum_probs=40.9
Q ss_pred eccccccccCchhhhHHHHHHHHHHHHHHHHHh-hCCCc---eEEEEecCccCCCCcceeeeeeEcC
Q psy5902 33 ANRVSKLQQTIDCERLFHILGHLMIVAKKVAAK-KLIRN---YRVVVNNGWEAVQFSGHLHLHVLGG 95 (103)
Q Consensus 33 k~Hi~~l~~l~~~e~~~~~l~~l~~~a~~v~~~-~~~~g---~~i~~n~G~~agQ~V~HlHlHvip~ 95 (103)
.+|..++.+++.++ +..++.+-++..++ .-..+ .-+.-|.|+.||-|.+|-|.-|+.-
T Consensus 101 p~H~~~l~~~~~~~-----i~~v~~~~~~r~~~l~~~~~~~yv~if~N~G~~aGaSl~HpH~Qi~a~ 162 (329)
T cd00608 101 PDHNLTLAEMSVAE-----IREVVEAWAERTRELGKNPRIKYVQIFENKGAEMGASLPHPHGQIWAL 162 (329)
T ss_pred CcccCChhhCCHHH-----HHHHHHHHHHHHHHHhcCCCCcEEEEEeecCcccccCCCCCCeeeeeC
Confidence 88999999999865 35555544443333 11112 4456899999999999999998863
No 27
>COG5075 Uncharacterized conserved protein [Function unknown]
Probab=87.37 E-value=0.62 Score=35.46 Aligned_cols=84 Identities=14% Similarity=0.114 Sum_probs=46.8
Q ss_pred CccEEEECCCEEE-eccccCCC--cCCc--cee-----eccccccccCchhhhHHHHHHHHHHHHHHHHHh--hC-CCce
Q psy5902 5 VENYVCFTDSTVA-LCWVHGTP--PQGN--VFV-----ANRVSKLQQTIDCERLFHILGHLMIVAKKVAAK--KL-IRNY 71 (103)
Q Consensus 5 ~~~iv~e~d~~~a-~~af~d~~--P~~~--gH~-----k~Hi~~l~~l~~~e~~~~~l~~l~~~a~~v~~~--~~-~~g~ 71 (103)
-+++||||+++.- ++.+.|.. |++- -|+ +.-+.++.||.+.+. ..+..+-......... +. ++-.
T Consensus 154 ~erivyed~~~~ngfiiiPD~KWd~qt~dsL~l~aIv~~~diktiRDlr~~~i--~~l~rl~~kiltevp~~f~vd~n~l 231 (305)
T COG5075 154 NERIVYEDESVINGFIIIPDMKWDGQTVDSLYLVAIVYRTDIKTIRDLRYYHI--LWLIRLNNKILTEVPYQFGVDPNEL 231 (305)
T ss_pred cceeEecCcccccCceeccccccCccceeeeeEEEEEecCCchhhhhCchhhh--hHHHhhcccceEecchhcCcChhHe
Confidence 4678888887643 11133322 3221 222 778899999988664 3333332222222221 33 3556
Q ss_pred EEEEecCccCCCCcceeeeeeEc
Q psy5902 72 RVVVNNGWEAVQFSGHLHLHVLG 94 (103)
Q Consensus 72 ~i~~n~G~~agQ~V~HlHlHvip 94 (103)
++.++- -.|-.|+|+||+-
T Consensus 232 ~mfvHY----~PsYyhlHvHI~n 250 (305)
T COG5075 232 RMFVHY----QPSYYHLHVHIVN 250 (305)
T ss_pred EEEEEe----ccceEEEEEEEEe
Confidence 776653 3478999999984
No 28
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=86.02 E-value=3.1 Score=32.76 Aligned_cols=57 Identities=12% Similarity=0.118 Sum_probs=43.9
Q ss_pred eccccccccCchhhhHHHHHHHHHHHHHHHHHh---h-CCCceEEEEecCccCCCCcceeeeeeEc
Q psy5902 33 ANRVSKLQQTIDCERLFHILGHLMIVAKKVAAK---K-LIRNYRVVVNNGWEAVQFSGHLHLHVLG 94 (103)
Q Consensus 33 k~Hi~~l~~l~~~e~~~~~l~~l~~~a~~v~~~---~-~~~g~~i~~n~G~~agQ~V~HlHlHvip 94 (103)
..|-.++.+++.++ +.+++.+.++..++ . ...=..+..|.|+.+|-|.+|-|.=|+.
T Consensus 102 p~H~~~l~~~~~~~-----~~~vv~~~~e~~~~L~~~~~~~yV~iF~N~Gk~~G~S~~HPH~Qi~a 162 (338)
T COG1085 102 PDHSKTLPELPVEE-----IEEVVKLWQERVRELYEREKYKYVQIFENKGKAAGASLPHPHGQIVA 162 (338)
T ss_pred CcccCccccCCHHH-----HHHHHHHHHHHHHHHhhccCcceEEeeeccCcccCccCCCCCcceee
Confidence 88999999999855 57777777766654 1 1123567899999999999999988765
No 29
>PLN02643 ADP-glucose phosphorylase
Probab=85.86 E-value=2.4 Score=33.03 Aligned_cols=57 Identities=18% Similarity=0.171 Sum_probs=40.2
Q ss_pred eccccccccCchhhhHHHHHHHHHHHHHHHHHh-hCCCc---eEEEEecCccCCCCcceeeeeeEc
Q psy5902 33 ANRVSKLQQTIDCERLFHILGHLMIVAKKVAAK-KLIRN---YRVVVNNGWEAVQFSGHLHLHVLG 94 (103)
Q Consensus 33 k~Hi~~l~~l~~~e~~~~~l~~l~~~a~~v~~~-~~~~g---~~i~~n~G~~agQ~V~HlHlHvip 94 (103)
-+|..++.+|+.++ +..++.+-++..+. .-..+ ..+.-|-|+.+|-|.+|-|-=|+.
T Consensus 115 p~H~~~l~~~~~~~-----i~~v~~~~~~r~~~l~~~~~i~yv~iF~N~G~~aGaSl~HPH~Qi~a 175 (336)
T PLN02643 115 PVHSVQLSDLPARH-----IGEVLKAYKKRINQLQSDSRFKYVQVFKNHGASAGASMSHSHSQIIA 175 (336)
T ss_pred CccCCChHHCCHHH-----HHHHHHHHHHHHHHHhcCCCceEEEEEeecCccCCcCCCCCceeeEe
Confidence 88999999999865 35555544443332 11122 445689999999999999988875
No 30
>KOG2476|consensus
Probab=83.29 E-value=6.7 Score=32.44 Aligned_cols=79 Identities=16% Similarity=0.071 Sum_probs=51.6
Q ss_pred cEEEECCCEEEeccccCCCcCCccee----eccccccccCchhhhHHHHHHHHHHHHHHHHHhhCCCceEEEEecCccCC
Q psy5902 7 NYVCFTDSTVALCWVHGTPPQGNVFV----ANRVSKLQQTIDCERLFHILGHLMIVAKKVAAKKLIRNYRVVVNNGWEAV 82 (103)
Q Consensus 7 ~iv~e~d~~~a~~af~d~~P~~~gH~----k~Hi~~l~~l~~~e~~~~~l~~l~~~a~~v~~~~~~~g~~i~~n~G~~ag 82 (103)
-||-=.+.+++ -+..-|.+.+|+ -.|++++..|+++.. +.+...-...+++.+. +. ---+++-.- .
T Consensus 334 LIVsIG~~~Yl---AlaKGpLs~~HvlIipi~H~p~~~~ls~ev~--~Ei~kykaal~~myk~-~g-~~~vvfE~~---~ 403 (528)
T KOG2476|consen 334 LIVSIGNHFYL---ALAKGPLSSDHVLIIPIEHIPSLVPLSAEVT--QEINKYKAALRKMYKK-QG-KDAVVFERQ---S 403 (528)
T ss_pred eEEEecceeEE---eecCCCCCCCeEEEEEcccccccccCCHHHH--HHHHHHHHHHHHHHHh-cC-CeEEEEEee---c
Confidence 35666777877 788889999999 999999999998665 5555555555555443 21 011121110 1
Q ss_pred CCcceeeeeeEcC
Q psy5902 83 QFSGHLHLHVLGG 95 (103)
Q Consensus 83 Q~V~HlHlHvip~ 95 (103)
--.-|+|+-+||-
T Consensus 404 ~rs~Hlq~Qvipv 416 (528)
T KOG2476|consen 404 YRSVHLQLQVIPV 416 (528)
T ss_pred ccceeeEEEEEec
Confidence 2345999999984
No 31
>PF01087 GalP_UDP_transf: Galactose-1-phosphate uridyl transferase, N-terminal domain; InterPro: IPR005849 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C 1Z84_B 1ZWJ_A 2Q4L_A 2H39_B 2Q4H_A.
Probab=83.19 E-value=4.2 Score=28.81 Aligned_cols=57 Identities=18% Similarity=0.174 Sum_probs=34.3
Q ss_pred eccccccccCchhhhHHHHHHHHHHHHHHHHHh----hCCCceEEEEecCccCCCCcceeeeeeEc
Q psy5902 33 ANRVSKLQQTIDCERLFHILGHLMIVAKKVAAK----KLIRNYRVVVNNGWEAVQFSGHLHLHVLG 94 (103)
Q Consensus 33 k~Hi~~l~~l~~~e~~~~~l~~l~~~a~~v~~~----~~~~g~~i~~n~G~~agQ~V~HlHlHvip 94 (103)
-+|-.++.+|+.++. ..++.+-+.-... ....=.-+.=|.|..||.|..|-|--|+.
T Consensus 118 p~h~~~~~~~~~~~~-----~~i~~a~~~r~~~l~~~~~~~yv~~FeN~G~~~GaSl~HpHsQi~a 178 (183)
T PF01087_consen 118 PKHERTLADMSVKEI-----KEILKAWRDRYRELSSDKYIKYVLIFENEGYEAGASLPHPHSQIIA 178 (183)
T ss_dssp SSTT--GGGS-HHHH-----HHHHHHHHHHHHHHCT-TT-SEEEEEEEESGGGT-SSSSSEEEEEE
T ss_pred CCCCCChhhCCHHHH-----HHHHHHHHHHHHHHhccCCcceEEEEEecCCcCCCCCCCCceEEec
Confidence 788899999998764 4444432222221 11122445679999999999999988775
No 32
>PRK05471 CDP-diacylglycerol pyrophosphatase; Provisional
Probab=79.13 E-value=8.2 Score=29.27 Aligned_cols=74 Identities=9% Similarity=0.072 Sum_probs=46.3
Q ss_pred ECCCEEEeccccCCCcCCccee----ec---cccccccCchhhhHHHHHHHHHHHHHHHHHh---hCC-CceEEEEecCc
Q psy5902 11 FTDSTVALCWVHGTPPQGNVFV----AN---RVSKLQQTIDCERLFHILGHLMIVAKKVAAK---KLI-RNYRVVVNNGW 79 (103)
Q Consensus 11 e~d~~~a~~af~d~~P~~~gH~----k~---Hi~~l~~l~~~e~~~~~l~~l~~~a~~v~~~---~~~-~g~~i~~n~G~ 79 (103)
.+...+. |.| +..|-|+ .. =|++-.-+++... +.+..-.+.-..+.++ .++ +...+.+|.
T Consensus 60 ~~~gyvv---lKD--~~Gp~qyLLiPt~rIsGIEsP~Ll~~~tp--nyf~~AW~aR~~v~~~~g~pipd~~lsLaINS-- 130 (252)
T PRK05471 60 PQAGYVL---LKD--RNGPLQYLLMPTYRISGIESPLLLEPSTP--NYFALAWQARDFMSKKYGKPIPDSAVSLAINS-- 130 (252)
T ss_pred cCCCeEE---Eec--CCCCcceEEeecccccCccCccccCCCCc--cHHHHHHHHhHHHHHhhCCCCChhheEEEecC--
Confidence 4556666 777 5577777 33 4444444565555 5666666554455554 244 457777775
Q ss_pred cCCCCcceeeeeeE
Q psy5902 80 EAVQFSGHLHLHVL 93 (103)
Q Consensus 80 ~agQ~V~HlHlHvi 93 (103)
..|.|-.+||+||-
T Consensus 131 ~~gRSQnQLHIHIs 144 (252)
T PRK05471 131 RYGRTQDQLHIHIS 144 (252)
T ss_pred CCCccccceeeehh
Confidence 45899999999974
No 33
>TIGR00672 cdh CDP-diacylglycerol pyrophosphatase, bacterial type. Alternate names for this enzyme include CDP-diglyceride hydrolase and CDP-diacylglycerol hydrolase.
Probab=77.74 E-value=8.4 Score=29.20 Aligned_cols=74 Identities=12% Similarity=0.113 Sum_probs=47.1
Q ss_pred ECCCEEEeccccCCCcCCccee----e---ccccccccCchhhhHHHHHHHHHHHHHHHHHh-h--CC-CceEEEEecCc
Q psy5902 11 FTDSTVALCWVHGTPPQGNVFV----A---NRVSKLQQTIDCERLFHILGHLMIVAKKVAAK-K--LI-RNYRVVVNNGW 79 (103)
Q Consensus 11 e~d~~~a~~af~d~~P~~~gH~----k---~Hi~~l~~l~~~e~~~~~l~~l~~~a~~v~~~-~--~~-~g~~i~~n~G~ 79 (103)
.+...+. |.|+ ..|-|+ - .=|++-.-+++... +.+..-.+.-.-+.++ + ++ +...+.+|.
T Consensus 59 ~~~gyvv---lKD~--~Gp~qyLLmPt~rIsGIEsP~Ll~~~tp--nyf~~AW~aR~~v~~~~g~pipd~~lsLaINS-- 129 (250)
T TIGR00672 59 PNAGYVV---LKDL--NGPLQYLLMPTYRINGTESPLLLDPSTP--NFFWLAWQARDFMSKKYGQPIPDRAVSLAINS-- 129 (250)
T ss_pred CCCCeEE---EeCC--CCCceeEEeeccccCCccChhhcCCCCc--cHHHHHHHHhHHHHHhcCCCCChhheeEEecC--
Confidence 4566677 8885 577777 3 34444444566655 6666666544445554 2 34 457777775
Q ss_pred cCCCCcceeeeeeE
Q psy5902 80 EAVQFSGHLHLHVL 93 (103)
Q Consensus 80 ~agQ~V~HlHlHvi 93 (103)
..|.|-.|||+||=
T Consensus 130 ~~gRSQnQLHIHIs 143 (250)
T TIGR00672 130 RTGRSQNHFHIHIS 143 (250)
T ss_pred CCCcccccceeeHh
Confidence 44899999999974
No 34
>KOG2477|consensus
Probab=76.61 E-value=24 Score=29.72 Aligned_cols=83 Identities=8% Similarity=-0.044 Sum_probs=48.9
Q ss_pred cCccEEEECCCEEEeccccCCCcCCccee----eccccccccCchhhhHHHHHHHHHHHHHHHHHh--hCCCceEEEEec
Q psy5902 4 KVENYVCFTDSTVALCWVHGTPPQGNVFV----ANRVSKLQQTIDCERLFHILGHLMIVAKKVAAK--KLIRNYRVVVNN 77 (103)
Q Consensus 4 ~~~~iv~e~d~~~a~~af~d~~P~~~gH~----k~Hi~~l~~l~~~e~~~~~l~~l~~~a~~v~~~--~~~~g~~i~~n~ 77 (103)
+...+|--.+.++. .+....|.+.||+ -.|..+-.+|++..+ +.+.-.+ +-++.. ....+.-+.-|.
T Consensus 419 pkhlviSlg~~tYL--sLp~~~gL~~gHciIvptqH~~~t~slDEdvW--DEIrnfr---KcL~~Mfas~n~dviFyE~a 491 (628)
T KOG2477|consen 419 PKHLVISLGHRTYL--SLPTQPGLAKGHCIIVPTQHRINTLSLDEDVW--DEIRNFR---KCLALMFASMNLDVIFYENA 491 (628)
T ss_pred ccceeEEeccceeE--eccccCccccCceEEecccccccccccchHHH--HHHHHHH---HHHHHHHHhcCCCeEEEecc
Confidence 44556666666655 1333447889999 899999999988655 4333333 323322 111123222222
Q ss_pred CccCCCCcceeeeeeEcC
Q psy5902 78 GWEAVQFSGHLHLHVLGG 95 (103)
Q Consensus 78 G~~agQ~V~HlHlHvip~ 95 (103)
. .-|.-+|+-+|+||-
T Consensus 492 ~--~l~rrpH~~IeCIPv 507 (628)
T KOG2477|consen 492 P--SLQRRPHTAIECIPV 507 (628)
T ss_pred C--ccccCCceeEEEeec
Confidence 2 236789999999994
No 35
>PF02611 CDH: CDP-diacylglycerol pyrophosphatase; InterPro: IPR003763 The CDP-diacylglycerol pyrophosphatases 3.6.1.26 from EC play a role in the regulation of phospholipid metabolism by inositol, as well as regulating the cellular levels of phosphatidylinositol [].; GO: 0008715 CDP-diacylglycerol diphosphatase activity, 0008654 phospholipid biosynthetic process, 0016020 membrane; PDB: 2POF_A.
Probab=74.22 E-value=9.3 Score=28.41 Aligned_cols=76 Identities=13% Similarity=0.137 Sum_probs=37.6
Q ss_pred EEECCCEEEeccccCCCcCCccee----e---ccccccccCchhhhHHHHHHHHHHHHHHHHHh---hCC-CceEEEEec
Q psy5902 9 VCFTDSTVALCWVHGTPPQGNVFV----A---NRVSKLQQTIDCERLFHILGHLMIVAKKVAAK---KLI-RNYRVVVNN 77 (103)
Q Consensus 9 v~e~d~~~a~~af~d~~P~~~gH~----k---~Hi~~l~~l~~~e~~~~~l~~l~~~a~~v~~~---~~~-~g~~i~~n~ 77 (103)
|-.+...+. +.| +..+-|+ - .=|++-.-+++... +.+..-.+.-..++++ .++ +.+.+.+|.
T Consensus 29 Vd~~~gyvv---lKd--~~G~~qyLL~Pt~rIsGIEsP~Ll~~~~p--Nyf~~AW~aR~~v~~~~g~~lpd~~lsLaINS 101 (222)
T PF02611_consen 29 VDLQQGYVV---LKD--RNGPLQYLLMPTDRISGIESPALLEPRTP--NYFADAWQARGFVSQKLGKPLPDDDLSLAINS 101 (222)
T ss_dssp EETTTTEEE---EE---SSSSS-EEEEESS---STT-GGGGSTTS----HHHHHHHTTHHHHHHHTS---GGGEEEEEB-
T ss_pred EcCCCCEEE---EeC--CCCCccEEEeeccccCCccChhhcCCCCc--cHHHHHHHhhHHHHHhcCCCCCccceEEEecC
Confidence 334566666 777 5677777 3 34444444566555 6666666443444444 243 468888885
Q ss_pred CccCCCCcceeeeeeE
Q psy5902 78 GWEAVQFSGHLHLHVL 93 (103)
Q Consensus 78 G~~agQ~V~HlHlHvi 93 (103)
- .|.|-.+||+||-
T Consensus 102 ~--~gRsQdQLHIHis 115 (222)
T PF02611_consen 102 Q--YGRSQDQLHIHIS 115 (222)
T ss_dssp G--GG-S--S--EEEE
T ss_pred c--cCccccceEeEhh
Confidence 4 4899999999975
No 36
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=73.40 E-value=11 Score=29.45 Aligned_cols=57 Identities=14% Similarity=0.042 Sum_probs=40.2
Q ss_pred eccccccccCchhhhHHHHHHHHHHHHHHHHHh--hCCCceEEEEecCccCCCCcceeeeeeEc
Q psy5902 33 ANRVSKLQQTIDCERLFHILGHLMIVAKKVAAK--KLIRNYRVVVNNGWEAVQFSGHLHLHVLG 94 (103)
Q Consensus 33 k~Hi~~l~~l~~~e~~~~~l~~l~~~a~~v~~~--~~~~g~~i~~n~G~~agQ~V~HlHlHvip 94 (103)
.+|..++.+|+.++. ..++.+-++..++ ..-.=..+.-|-|+.+|-|.+|-|-=|+.
T Consensus 113 p~H~~~l~~~~~~~i-----~~v~~~~~~r~~~l~~~i~yv~iF~N~G~~~GaSl~HPH~Qi~a 171 (346)
T PRK11720 113 PDHSKTLPELSVAAL-----REVVDTWQEQTAELGKTYPWVQVFENKGAAMGCSNPHPHGQIWA 171 (346)
T ss_pred CCcCCChhHCCHHHH-----HHHHHHHHHHHHHHHhCCcEEEEEeecCcccCcCCCCCceeeee
Confidence 899999999998653 5555544443333 11112445679999999999999988775
No 37
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=68.85 E-value=13 Score=29.16 Aligned_cols=56 Identities=11% Similarity=0.042 Sum_probs=39.1
Q ss_pred eccccccccCchhhhHHHHHHHHHHHHHHHHHh-h--CCCceEEEEecCccCCCCcceeeeeeEc
Q psy5902 33 ANRVSKLQQTIDCERLFHILGHLMIVAKKVAAK-K--LIRNYRVVVNNGWEAVQFSGHLHLHVLG 94 (103)
Q Consensus 33 k~Hi~~l~~l~~~e~~~~~l~~l~~~a~~v~~~-~--~~~g~~i~~n~G~~agQ~V~HlHlHvip 94 (103)
-+|-.++.+|+.++. ..++.+-++-.+. . + .=.-+.-|-|..+|-|.+|-|-=|+.
T Consensus 113 p~H~~~l~~m~~~~i-----~~v~~~~~~r~~~l~~~i-~yv~iF~N~G~~~GaSl~HPH~Qi~a 171 (347)
T TIGR00209 113 PDHSKTLPELSVAAL-----TEIVKTWQEQTAELGKTY-PWVQIFENKGAAMGCSNPHPHGQIWA 171 (347)
T ss_pred CCccCChhHCCHHHH-----HHHHHHHHHHHHHHHhCC-cEEEEEeecCcccCcCCCCCceeeee
Confidence 889999999999654 4455444333332 1 1 11445679999999999999987765
No 38
>COG2134 Cdh CDP-diacylglycerol pyrophosphatase [Lipid metabolism]
Probab=53.35 E-value=40 Score=25.29 Aligned_cols=48 Identities=10% Similarity=0.109 Sum_probs=27.9
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHh---hCC-CceEEEEecCccCCCCcceeeeeeE
Q psy5902 42 TIDCERLFHILGHLMIVAKKVAAK---KLI-RNYRVVVNNGWEAVQFSGHLHLHVL 93 (103)
Q Consensus 42 l~~~e~~~~~l~~l~~~a~~v~~~---~~~-~g~~i~~n~G~~agQ~V~HlHlHvi 93 (103)
+++... ..+..-.+.---+.++ .++ ....+.+|.- -|.+-.|+|+||-
T Consensus 93 ~e~atp--Nyf~~AWqAR~fms~kyg~~ipd~dvsLaINs~--~gRtQdqlHIHIS 144 (252)
T COG2134 93 LEPATP--NYFYLAWQARDFMSKKYGNPIPDSDVSLAINSK--NGRTQDQLHIHIS 144 (252)
T ss_pred cCCCCc--cHHHHHHHHHHHHHHHhCCCCCccceEEEecCc--cCccccceEEEEE
Confidence 444444 5555555433334444 233 3677777654 4788889999975
No 39
>PF12239 DUF3605: Protein of unknown function (DUF3605); InterPro: IPR022036 This family of proteins is found in eukaryotes and viruses. Proteins in this family are typically between 161 and 256 amino acids in length.
Probab=35.15 E-value=1.1e+02 Score=21.37 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=15.0
Q ss_pred eEEEEecCccCCCCccee-eeeeE
Q psy5902 71 YRVVVNNGWEAVQFSGHL-HLHVL 93 (103)
Q Consensus 71 ~~i~~n~G~~agQ~V~Hl-HlHvi 93 (103)
-++.+-.++.+-|||.=+ |+||+
T Consensus 133 ~~v~WF~N~~~LqSV~~v~H~HVl 156 (158)
T PF12239_consen 133 DNVLWFKNWPSLQSVRAVEHIHVL 156 (158)
T ss_pred ccEEEEeCchhcCCcCcceEEEEE
Confidence 445544456678999755 77776
No 40
>PRK13878 conjugal transfer relaxase TraI; Provisional
Probab=33.74 E-value=71 Score=27.92 Aligned_cols=36 Identities=17% Similarity=0.227 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHh-hCCC-ceEEEEecCccCCCCcceeeeeeEc
Q psy5902 53 GHLMIVAKKVAAK-KLIR-NYRVVVNNGWEAVQFSGHLHLHVLG 94 (103)
Q Consensus 53 ~~l~~~a~~v~~~-~~~~-g~~i~~n~G~~agQ~V~HlHlHvip 94 (103)
..+...+.+++++ ++.+ -|-+..+. .-.|+|+||+-
T Consensus 84 e~~~~I~~~~~~~LG~~~hQ~Vva~H~------DTdh~HiHIvi 121 (746)
T PRK13878 84 DTLRAIEERICAGLGYGEHQRVSAVHH------DTDNLHIHIAI 121 (746)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEEEC------CCCCceeEEEE
Confidence 4456667777766 6633 35555553 45799999985
No 41
>PF03432 Relaxase: Relaxase/Mobilisation nuclease domain ; InterPro: IPR005094 Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalysing trans-esterification [].
Probab=33.34 E-value=1.2e+02 Score=21.57 Aligned_cols=36 Identities=25% Similarity=0.320 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHh-hCC-CceEEEEecCccCCCCcceeeeeeEc
Q psy5902 53 GHLMIVAKKVAAK-KLI-RNYRVVVNNGWEAVQFSGHLHLHVLG 94 (103)
Q Consensus 53 ~~l~~~a~~v~~~-~~~-~g~~i~~n~G~~agQ~V~HlHlHvip 94 (103)
..+...+..+++. ... .-|-++.+. .-.|.|+||+-
T Consensus 72 e~~~~~~~~~~~~~~~~~~~~v~~~H~------D~~h~H~Hivi 109 (242)
T PF03432_consen 72 EQAHEIAREFAEEMGPGNHQYVVVVHT------DTDHPHVHIVI 109 (242)
T ss_pred HHHHHHHHHHHHHcCCCCcceEEEECC------CcCeeeeeEEE
Confidence 5566677777776 432 234444432 24588888875
No 42
>PF02729 OTCace_N: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; InterPro: IPR006132 This entry contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and may also play a role in trimerization of the molecules []. The carboxyl-terminal, aspartate/ornithine-binding domain is is described by IPR006131 from INTERPRO. ; GO: 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 2P2G_D 2I6U_A 2YFK_B 3D6N_B 3SDS_A 3GD5_A 3R7L_B 3R7F_A 3R7D_A ....
Probab=28.74 E-value=77 Score=21.53 Aligned_cols=27 Identities=19% Similarity=0.235 Sum_probs=20.6
Q ss_pred ccccccccCchhhhHHHHHHHHHHHHHHHHHh
Q psy5902 34 NRVSKLQQTIDCERLFHILGHLMIVAKKVAAK 65 (103)
Q Consensus 34 ~Hi~~l~~l~~~e~~~~~l~~l~~~a~~v~~~ 65 (103)
||+-++.|++++| +..++..|.++-+.
T Consensus 1 r~~l~~~dls~~e-----i~~ll~~A~~lk~~ 27 (142)
T PF02729_consen 1 RHLLSIKDLSPEE-----IEALLDLAKELKAA 27 (142)
T ss_dssp SEBSSGGGS-HHH-----HHHHHHHHHHHHHH
T ss_pred CCcCchhhCCHHH-----HHHHHHHHHHHHhh
Confidence 5788999999865 58888888887654
No 43
>PRK13863 type IV secretion system T-DNA border endonuclease VirD2; Provisional
Probab=27.52 E-value=1.5e+02 Score=24.37 Aligned_cols=36 Identities=22% Similarity=0.227 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhhCCCc-------eEEEEecCccCCCCcceeeeeeEc
Q psy5902 53 GHLMIVAKKVAAKKLIRN-------YRVVVNNGWEAVQFSGHLHLHVLG 94 (103)
Q Consensus 53 ~~l~~~a~~v~~~~~~~g-------~~i~~n~G~~agQ~V~HlHlHvip 94 (103)
..+...+++.|++.|.+| |-+.+++- -.|-|+||+=
T Consensus 96 eAVrdAARefA~E~FgsG~~G~~~dYV~AlH~D------~dHPHVHLvV 138 (446)
T PRK13863 96 VAAYAASREWAAEMFGSGAGGGRYNYLTAFHID------RDHPHLHVVV 138 (446)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCceeEEEEEecC------CCCCeEEEEE
Confidence 556777788877655432 45555442 3588888864
No 44
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=27.43 E-value=66 Score=25.59 Aligned_cols=27 Identities=19% Similarity=0.158 Sum_probs=14.5
Q ss_pred HHHHHHHh-hC-CCceEEEEecCccCCCCccee
Q psy5902 58 VAKKVAAK-KL-IRNYRVVVNNGWEAVQFSGHL 88 (103)
Q Consensus 58 ~a~~v~~~-~~-~~g~~i~~n~G~~agQ~V~Hl 88 (103)
.++++.++ ++ .+.+.++ |.+ ||+|.|.
T Consensus 76 av~~~~~~~~l~~~~id~I---gsH-GQTv~H~ 104 (365)
T PRK09585 76 AVNALLAEAGLSPEDIDAI---GSH-GQTVRHR 104 (365)
T ss_pred HHHHHHHHcCCCccCccEE---EeC-CcccccC
Confidence 34455544 44 2234332 444 9999985
No 45
>PF01446 Rep_1: Replication protein; InterPro: IPR000989 Replication proteins (rep) are involved in plasmid replication. The Rep protein binds to the plasmid DNA and nicks it at the double strand origin (dso) of replication. The 3'-hydroxyl end created is extended by the host DNA replicase, and the 5' end is displaced during synthesis. At the end of one replication round, Rep introduces a second single stranded break at the dso and ligates the ssDNA extremities generating one double-stranded plasmid and one circular ssDNA form. Complementary strand synthesis of the circular ssDNA is usually initiated at the single-stranded origin by the host RNA polymerase [].; GO: 0003677 DNA binding, 0006260 DNA replication, 0005727 extrachromosomal circular DNA
Probab=26.94 E-value=2e+02 Score=21.21 Aligned_cols=40 Identities=30% Similarity=0.426 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHh-hC--C-Cce----EEEEecCccCCCCcceeeeeeE
Q psy5902 50 HILGHLMIVAKKVAAK-KL--I-RNY----RVVVNNGWEAVQFSGHLHLHVL 93 (103)
Q Consensus 50 ~~l~~l~~~a~~v~~~-~~--~-~g~----~i~~n~G~~agQ~V~HlHlHvi 93 (103)
+.+.+|...-+++.+. .+ . .|| .+..|. . ..-.|-|+||+
T Consensus 40 ~~l~~m~~a~~rl~~~k~~~~~~~G~ir~~EvT~~~--~--~g~~HPH~Hvl 87 (233)
T PF01446_consen 40 DTLDHMNKAFRRLFKRKRFKKNVLGYIRSTEVTYNK--E--NGSWHPHFHVL 87 (233)
T ss_pred HHHHHHHHHHHHHHhccchhcccceEEEEEEEecCC--C--CCeeccceEEE
Confidence 4567777776776654 22 1 243 333322 1 23578888887
No 46
>PF04270 Strep_his_triad: Streptococcal histidine triad protein ; InterPro: IPR006270 This entry represents a repeated sequence region that includes a His-X-X-His-X-His (histidine triad) motif, which is found in family of Streptococcal proteins. Members of the family are suggested to cleave human complement component 3, and family member PhpA has been shown in vaccine studies to be a protective antigen in mice []. ; PDB: 2CS7_C.
Probab=26.20 E-value=1.4e+02 Score=17.24 Aligned_cols=36 Identities=11% Similarity=-0.009 Sum_probs=19.8
Q ss_pred CCcCccEEEECCCEEEeccccCCCcCCcceeeccccccccCchhhh
Q psy5902 2 LFKVENYVCFTDSTVALCWVHGTPPQGNVFVANRVSKLQQTIDCER 47 (103)
Q Consensus 2 ~~~~~~iv~e~d~~~a~~af~d~~P~~~gH~k~Hi~~l~~l~~~e~ 47 (103)
.|++.+|+-+++.-++ +.. -+| -|+-...+|+++|.
T Consensus 8 vFdp~dI~~~~~~gy~---vpH-----gdH--~HyI~k~dLs~~E~ 43 (53)
T PF04270_consen 8 VFDPADIISETGDGYV---VPH-----GDH--FHYIPKSDLSASEL 43 (53)
T ss_dssp B--GGG--EE-SSEEE---EEE-----TTE--EEEEEGGGS-HHHH
T ss_pred eeCHHHccccCCCeEE---eeC-----CCc--ccCCchhhCCHHHH
Confidence 4788999999988887 432 134 46666678887664
No 47
>PF13711 DUF4160: Domain of unknown function (DUF4160)
Probab=24.78 E-value=1.1e+02 Score=17.86 Aligned_cols=24 Identities=21% Similarity=0.166 Sum_probs=11.2
Q ss_pred ceEEEEecCccCCCCcceeeeeeEcC
Q psy5902 70 NYRVVVNNGWEAVQFSGHLHLHVLGG 95 (103)
Q Consensus 70 g~~i~~n~G~~agQ~V~HlHlHvip~ 95 (103)
||++.+......-..-+ |+||.-+
T Consensus 1 G~~i~~ys~e~~dH~Pp--HvHv~~g 24 (66)
T PF13711_consen 1 GIRIYFYSNEGNDHEPP--HVHVRYG 24 (66)
T ss_pred CEEEEEEECCCCCCCCC--eEEEEcC
Confidence 56776654321112344 5555544
No 48
>PF01076 Mob_Pre: Plasmid recombination enzyme; InterPro: IPR001668 With some plasmids, recombination can occur in a site specific manner that is independent of RecA. In such cases, the recombination event requires another protein called Pre. Pre is a plasmid recombination enzyme. This protein is also known as Mob (conjugative mobilisation) [].; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005727 extrachromosomal circular DNA
Probab=23.98 E-value=45 Score=23.73 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=15.0
Q ss_pred eEEEEecCccCCCCcceeeeeeEcC
Q psy5902 71 YRVVVNNGWEAVQFSGHLHLHVLGG 95 (103)
Q Consensus 71 ~~i~~n~G~~agQ~V~HlHlHvip~ 95 (103)
++..++.- -+.||+|+-++|.
T Consensus 121 ~~a~vH~D----E~tPH~H~~~vP~ 141 (196)
T PF01076_consen 121 VSAVVHLD----ETTPHMHFDVVPI 141 (196)
T ss_pred EEEEEECC----CCCcceEEEEeec
Confidence 44445443 4699999999995
No 49
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=23.80 E-value=1.1e+02 Score=23.43 Aligned_cols=31 Identities=10% Similarity=0.246 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHh-hCCCceEEEEecCcc
Q psy5902 50 HILGHLMIVAKKVAAK-KLIRNYRVVVNNGWE 80 (103)
Q Consensus 50 ~~l~~l~~~a~~v~~~-~~~~g~~i~~n~G~~ 80 (103)
+....|...++++.+. +++-|.|+.-|++..
T Consensus 68 ~tvaaMa~iv~~v~r~v~iPvGvNVLrNd~va 99 (263)
T COG0434 68 ETVAAMAVIVREVVREVSIPVGVNVLRNDAVA 99 (263)
T ss_pred HHHHHHHHHHHHHHHhccccceeeeeccccHH
Confidence 5678888888888887 777799999988754
No 50
>PF08751 TrwC: TrwC relaxase; InterPro: IPR014862 Relaxases are DNA strand transferases which function during the conjugative cell to cell DNA transfer. TrwC binds to the origin of transfer (oriT) and melts the double helix. ; PDB: 1ZM5_A 1S6M_A 1OSB_C 2CDM_C 1OMH_A 1QX0_A 3L57_A 3L6T_A 2A0I_A 2Q7U_A ....
Probab=23.58 E-value=46 Score=25.40 Aligned_cols=9 Identities=44% Similarity=0.741 Sum_probs=7.7
Q ss_pred cceeeeeeE
Q psy5902 85 SGHLHLHVL 93 (103)
Q Consensus 85 V~HlHlHvi 93 (103)
=||||.|++
T Consensus 159 DP~LHtH~v 167 (296)
T PF08751_consen 159 DPQLHTHVV 167 (296)
T ss_dssp SEEEEEEEE
T ss_pred ccCccceee
Confidence 389999987
No 51
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=23.41 E-value=1.1e+02 Score=23.20 Aligned_cols=31 Identities=10% Similarity=0.223 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHh-hCCCceEEEEecCcc
Q psy5902 50 HILGHLMIVAKKVAAK-KLIRNYRVVVNNGWE 80 (103)
Q Consensus 50 ~~l~~l~~~a~~v~~~-~~~~g~~i~~n~G~~ 80 (103)
+....|...+.++.+. .++-|.|+..|++.+
T Consensus 62 ~tva~m~~i~~~v~~~~~~p~GvnvL~nd~~a 93 (257)
T TIGR00259 62 ETVAAMAVIAGQLKSDVSIPLGINVLRNDAVA 93 (257)
T ss_pred HHHHHHHHHHHHHHHhcCCCeeeeeecCCCHH
Confidence 5567777777777766 556689999888763
No 52
>PRK09458 pspB phage shock protein B; Provisional
Probab=22.11 E-value=1.6e+02 Score=18.31 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=19.8
Q ss_pred ccCchhhhHHHHHHHHHHHHHHHHHh
Q psy5902 40 QQTIDCERLFHILGHLMIVAKKVAAK 65 (103)
Q Consensus 40 ~~l~~~e~~~~~l~~l~~~a~~v~~~ 65 (103)
..|+++|. ..+.+|.+.|+++...
T Consensus 34 ~~Ls~~d~--~~L~~L~~~A~rm~~R 57 (75)
T PRK09458 34 QGLSQEEQ--QRLAQLTEKAERMRER 57 (75)
T ss_pred CCCCHHHH--HHHHHHHHHHHHHHHH
Confidence 46888887 8899999999988765
No 53
>PHA02769 hypothetical protein; Provisional
Probab=20.28 E-value=2e+02 Score=19.70 Aligned_cols=60 Identities=20% Similarity=0.419 Sum_probs=31.0
Q ss_pred CCCEEEeccccCCCcCCcc---ee-----eccccccccCchhhhHHHHHHHHHHHHHHHHHhhCCCceEEEEecC
Q psy5902 12 TDSTVALCWVHGTPPQGNV---FV-----ANRVSKLQQTIDCERLFHILGHLMIVAKKVAAKKLIRNYRVVVNNG 78 (103)
Q Consensus 12 ~d~~~a~~af~d~~P~~~g---H~-----k~Hi~~l~~l~~~e~~~~~l~~l~~~a~~v~~~~~~~g~~i~~n~G 78 (103)
.+..+|+.|+.|-.|..-- |- .--|..+....+.| .++.-|..+++++- .||+.+.+-.|
T Consensus 53 ~~y~~avawlhd~~pfr~ia~~~~ip~drs~firritk~apgd---~lvnfl~~l~~k~~----~dg~evlwtlg 120 (154)
T PHA02769 53 KEYIVAVAWLHDNTPFRFIAQQYNIPNDRSYFIRRITKTAPGD---HLVNFLNDLAEKLK----KDGFEVLWTLG 120 (154)
T ss_pred cceEEEEEeeccCCchhhHHHHhCCCcchHHHHHHHhccCChH---HHHHHHHHHHHHHh----cCCeEEEEEec
Confidence 3456889999998885421 21 12333444444433 23333333333332 36777776555
Done!