RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5902
(103 letters)
>3o1c_A Histidine triad nucleotide-binding protein 1; hydrolase, HINT
protein, HIT protein, adenosine 5'- monophosphoramidase;
HET: ADN; 1.08A {Oryctolagus cuniculus} PDB: 3llj_A*
1rzy_A* 3qgz_A* 3o1z_A 3o1x_A* 4eqe_A* 4eqg_A* 4eqh_A*
3tw2_A* 1kpb_A 1kpf_A* 1kpa_A 1kpc_A 1av5_A* 1kpe_A*
4rhn_A* 3rhn_A* 5rhn_A* 6rhn_A
Length = 126
Score = 81.4 bits (202), Expect = 1e-21
Identities = 31/54 (57%), Positives = 39/54 (72%), Gaps = 1/54 (1%)
Query: 51 ILGHLMIVAKKVAAKKLIRN-YRVVVNNGWEAVQFSGHLHLHVLGGRPLHWPPG 103
+LGHLMIV KK AA ++ YR+VVN G + Q H+HLHVLGGR ++WPPG
Sbjct: 73 LLGHLMIVGKKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMNWPPG 126
>3oj7_A Putative histidine triad family protein; hydrolase, structural
genomics, seattle structural genomics for infectious
disease, ssgcid; 1.40A {Entamoeba histolytica} PDB:
3omf_A* 3oxk_A*
Length = 117
Score = 78.3 bits (194), Expect = 1e-20
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 51 ILGHLMIVAKKVAAKKLIRNYRVVVNNGWEAVQFSGHLHLHVLGGRPLHWPP 102
+G ++ + K+ YRVV N G +A Q H+H H+LGG+ L W
Sbjct: 65 FIGKVLYKVSLIGKKECPEGYRVVNNIGEDAGQTVKHIHFHILGGKKLAWDK 116
>4egu_A Histidine triad (HIT) protein; structural genomics, center for
structural genomics of infec diseases, csgid, HIT
domain, unknown function; HET: 5GP; 0.95A {Clostridium
difficile}
Length = 119
Score = 72.6 bits (179), Expect = 2e-18
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 51 ILGHLMIVAKKVAAKKLIRN--YRVVVNNGWEAVQFSGHLHLHVLGGRPL-HWPPG 103
I+ H+ +V K+A +K +RV+ N G + Q HLH H+L G+ L ++ G
Sbjct: 62 IVSHIHVVINKIAKEKGFDQTGFRVINNCGSDGGQEVKHLHYHILAGKKLPNYEAG 117
>3n1s_A HIT-like protein HINT; histidine triad nucleotide binding protein,
GMP, hydro; HET: 5GP; 1.45A {Escherichia coli} PDB:
3n1t_A*
Length = 119
Score = 65.6 bits (161), Expect = 2e-15
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 51 ILGHLMIVAKKVAAKKLIRN--YRVVVNNGWEAVQFSGHLHLHVLGGRPL 98
LG ++ VA K+A ++ I YR+++N Q H+H+H+LGGRPL
Sbjct: 61 ALGRMITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIHMHLLGGRPL 110
>1xqu_A HIT family hydrolase; protein STRU initiative, PSI, southeast
collaboratory for structural GEN secsg; 2.30A
{Clostridium thermocellum} SCOP: d.13.1.1
Length = 147
Score = 64.2 bits (157), Expect = 1e-14
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 51 ILGHLMIVAKKVAAKKLIRN--YRVVVNNGWEAVQFSGHLHLHVLGGRPL 98
IL + A KVA I YR++ N G A Q HLH H+LGG +
Sbjct: 93 ILIDIHKAANKVAEDLGIAEKGYRLITNCGVAAGQTVFHLHYHLLGGVDM 142
>3o0m_A HIT family protein; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, hydrola structural genomics; HET: AMP;
1.90A {Mycobacterium smegmatis str}
Length = 149
Score = 63.5 bits (155), Expect = 2e-14
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
Query: 51 ILGHLMIVAKKVAAKKLIRN--YRVVVNNGWEAVQFSGHLHLHVLGGR---PLHWPPG 103
+ + + A + + + +N+G A Q H+HLHV+ R L + G
Sbjct: 63 GMAAVGQRIARAARESGLHADGNNIAINDGKAAFQTVFHIHLHVVPRRNGDKLSFAKG 120
>3p0t_A Uncharacterized protein; ssgcid, HIT-like protein, mycobacerium
paratuberculosis, STR genomics; 1.90A {Mycobacterium
avium subsp}
Length = 138
Score = 60.4 bits (147), Expect = 3e-13
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 51 ILGHLMIVAKKVAAKKLIRNYRVVVNNGWEAVQFSGHLHLHVLGGRPLHW 100
+M V++ + K + + +R + A HLH+HV R L
Sbjct: 60 AFNRVMGVSQLIG-KAVCKAFRTERSGLIIAGLEVPHLHVHVFPTRSLSD 108
>3ksv_A Uncharacterized protein; HIT family, structural genomics,
structural genomics of PATH protozoa consortium, SGPP,
unknown function; 1.90A {Leishmania major}
Length = 149
Score = 59.3 bits (144), Expect = 1e-12
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 7/59 (11%)
Query: 51 ILGHLMIVAKKVAAKKL-IRNYRVVVNNGWEAVQFSGHLHLHVL------GGRPLHWPP 102
+G L+ A + A Y V+ NNG A Q H+H H++ G + W
Sbjct: 69 DVGVLLAKASRAVAGPDGSMQYNVLQNNGSLAHQEVPHVHFHIIPKTDEKTGLKIGWDT 127
>3r6f_A HIT family protein; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
protozoan parasite; 1.85A {Encephalitozoon cuniculi}
Length = 135
Score = 54.2 bits (131), Expect = 5e-11
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 8/58 (13%)
Query: 52 LGHLMIVAKKVAAKKLIRNYRVVVNNGWEAVQFSGHLHLHVLGGR------PLHWPPG 103
L ++ + + K Y ++ NNG Q H+H HV+ ++W
Sbjct: 60 LSGVLDTIRHLVQKFGFERYNILQNNG--NHQEVFHVHFHVIPFVSADERLMINWKAK 115
>3imi_A HIT family protein; structural genomics, infectious diseases for
structural genomics of infectious diseases, unknown FUN
csgid; 2.01A {Bacillus anthracis str}
Length = 147
Score = 53.9 bits (130), Expect = 1e-10
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 10/62 (16%)
Query: 51 ILGHLMIVAKKVA--AKKLIRN--YRVVVNNGWEAVQFSGHLHLHVLG------GRPLHW 100
I H+ V K+A K + ++ NNG +A Q H HLH++ G W
Sbjct: 64 IASHIFSVVPKIANAIKAEFNPVGFNLLNNNGEKAGQTVFHFHLHLIPRYGENDGFGAVW 123
Query: 101 PP 102
Sbjct: 124 KS 125
>2eo4_A 150AA long hypothetical histidine triad nucleotid protein; HIT
family, structural genomics, NPPSFA; 1.80A {Sulfolobus
tokodaii}
Length = 149
Score = 53.1 bits (128), Expect = 2e-10
Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 52 LGHLMIVAKKVAAKKLIRN-YRVVVNNGWEAVQFSGHLHLHVLGGRPLHWPPG 103
L ++ + + + R++ N G A Q HLH+H++ +P
Sbjct: 58 LAKVVKLVSLGIKDAVKADGLRLLTNIGRSAGQVIFHLHVHIIPTWEGDYPDI 110
>3l7x_A SMU.412C, putative HIT-like protein involved in cell-cycle
regulation; 1.70A {Streptococcus mutans}
Length = 173
Score = 53.2 bits (128), Expect = 3e-10
Identities = 8/59 (13%), Positives = 21/59 (35%), Gaps = 6/59 (10%)
Query: 50 HILGHLMIVAKKVAAKKLIRNYRVVVNNGWEAVQFSGHLHLHVL------GGRPLHWPP 102
++ + +A+ + ++ NN A Q H H+H++ + +
Sbjct: 94 NLFARIPKIARALQKATKADGLNIINNNEETAGQTVFHAHVHLVPRFADSDEFDIRFVQ 152
>1y23_A HIT, histidine triad protein; HIT protein, PKCI-1, cell-cycle
regulation, NYSGXRC, structural genomics, protein
structure initiative; 2.30A {Bacillus subtilis} SCOP:
d.13.1.1
Length = 145
Score = 52.0 bits (125), Expect = 6e-10
Identities = 12/61 (19%), Positives = 19/61 (31%), Gaps = 10/61 (16%)
Query: 52 LGHLMIVAKKVA--AKKLIRN--YRVVVNNGWEAVQFSGHLHLHVL------GGRPLHWP 101
K+A + + NNG +A Q H H+H++ G W
Sbjct: 61 AKQYFHAVPKIARAIRDEFEPIGLNTLNNNGEKAGQSVFHYHMHIIPRYGKGDGFGAVWK 120
Query: 102 P 102
Sbjct: 121 T 121
>3lb5_A HIT-like protein involved in cell-cycle regulatio; niaid, seattle
structural genomics center for infectious DIS ssgcid,
histidine triad; 1.90A {Bartonella henselae}
Length = 161
Score = 48.5 bits (116), Expect = 1e-08
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 7/58 (12%)
Query: 52 LGHLMIVAKKVA--AKKLIRN--YRVVVNNGWEAVQFSGHLHLHVLGGR---PLHWPP 102
L ++ +K+A KK + V+ N + Q HLH H++ L
Sbjct: 84 LFPVIKAVQKIAKAVKKAFQADGITVMQFNEAASQQTVYHLHFHIIPRMEGIELTPHN 141
>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding
protein, DNA deadenylas hydrolase; 1.80A
{Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*
Length = 204
Score = 37.0 bits (85), Expect = 3e-04
Identities = 7/58 (12%), Positives = 18/58 (31%), Gaps = 13/58 (22%)
Query: 51 ILGHLMIVAKKVAAKKLI-------------RNYRVVVNNGWEAVQFSGHLHLHVLGG 95
++ L+ + + + + G+ A +LHLH++
Sbjct: 68 LVEKLVSYVQGDLSGLIFDEARNCLSQQLTNEALCNYIKVGFHAGPSMNNLHLHIMTL 125
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.002
Identities = 18/97 (18%), Positives = 31/97 (31%), Gaps = 33/97 (34%)
Query: 31 FVANRVSKLQQTIDCERLFHILGHL-----------MIVA--------KKVAAKKLIRNY 71
+V++ V + + L L + A V K+LI+NY
Sbjct: 67 YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY 126
Query: 72 ---RVVVNNG---------WEAVQFSGHLHLHVL-GG 95
R++ + AV G+ L + GG
Sbjct: 127 ITARIMAKRPFDKKSNSALFRAVG-EGNAQLVAIFGG 162
Score = 24.6 bits (53), Expect = 9.0
Identities = 8/32 (25%), Positives = 10/32 (31%), Gaps = 9/32 (28%)
Query: 72 RVVVNNGWEAVQFSGHLHLHVLGGRPLHWPPG 103
R+ V WE H+ G PG
Sbjct: 485 RLPVK--WETTTQFKATHILDFG-------PG 507
>1fit_A FragIle histidine protein; FHIT, fragIle histidine triad protein,
putative human tumor suppressor, advanced photon source,
APS; HET: FRU; 1.85A {Homo sapiens} SCOP: d.13.1.1 PDB:
1fhi_A* 2fit_A* 3fit_A* 4fit_A 5fit_A* 6fit_A* 2fhi_A*
Length = 147
Score = 27.3 bits (61), Expect = 0.70
Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 52 LGHLMIVAKKVAAKKLIRNYR-----VVVNNGWEAVQFSGHLHLHVL 93
+ L ++V + +++ + +G EA Q H+H+HVL
Sbjct: 55 VADLFQTTQRVG-TVVEKHFHGTSLTFSMQDGPEAGQTVKHVHVHVL 100
>3ano_A AP-4-A phosphorylase; diadenosine polyphosphate, HIT transferase;
HET: PG4; 1.89A {Mycobacterium tuberculosis}
Length = 218
Score = 26.9 bits (59), Expect = 1.2
Identities = 9/49 (18%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 46 ERLFHILGHLMIVAKKVAAKKLIRNYRVVVNNGWEAVQ-FSGHLHLHVL 93
++ + + + V +N G A + HLH+HV+
Sbjct: 124 LESAELMAFTQKAIRVIKNVSRPHGFNVGLNLGTSAGGSLAEHLHVHVV 172
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM,
nitrilase, nucleotide-binding protein, cancer; 2.80A
{Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1
Length = 440
Score = 26.6 bits (59), Expect = 1.7
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Query: 55 LMIVAKKVAAKKLIRNYR-----VVVNNGWEAVQFSGHLHLHVLGGRP 97
L IVAKKV L +++ + V +G +A Q H+H+H+L R
Sbjct: 354 LFIVAKKVQ-AMLEKHHNVTSTTICVQDGKDAGQTVPHVHIHILPRRA 400
>2qhq_A Unknown function protein VPA0580; structura genomics, PSI-2,
protein structure initiative, midwest CENT structural
genomics, MCSG; HET: MSE MLY; 1.76A {Vibrio
parahaemolyticus} PDB: 2qm2_A*
Length = 125
Score = 25.7 bits (56), Expect = 2.2
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 69 RNYRVVVNNGWEAVQFSG 86
+N R + GWE +QF
Sbjct: 102 QNIRNFMVTGWEGIQFET 119
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis
sugar metaboli transferase; HET: TPP; 1.75A {Homo
sapiens} PDB: 3ooy_A*
Length = 616
Score = 26.0 bits (58), Expect = 2.9
Identities = 10/38 (26%), Positives = 13/38 (34%), Gaps = 10/38 (26%)
Query: 63 AAKKL-IRNYRVVVNNG---------WEAVQFSGHLHL 90
K +YRV G WEA+ F+ L
Sbjct: 136 TGKYFDKASYRVYCLLGDGELSEGSVWEAMAFASIYKL 173
>2pxg_A Outer membrane protein; two layer alpha/beta plait, two layer
sandwich architecture; NMR {Xanthomonas axonopodis PV}
Length = 118
Score = 24.9 bits (54), Expect = 3.9
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 26 PQGNVFVANRVSKLQQTIDCERLFHILG 53
QGN+ N V +LQ +++ +LG
Sbjct: 13 YQGNLIKQNAVEQLQVGQSKQQVSALLG 40
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion,
hydrolas binding complex; 2.40A {Helicobacter pylori}
SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Length = 330
Score = 25.4 bits (56), Expect = 4.3
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 28 GNVFVANRVSKLQQTIDCERLFHILGHLMIVAKKVAA 64
V+V + Q +R L LM A+ A+
Sbjct: 54 KVVWVLKNNGEWQPFDVRDRKAFSLSRLMHFARCCAS 90
>3qwm_A Iqsec1, IQ motif and SEC7 domain-containing protein 1; structural
genomics, structural genomics consortium, SGC; 2.39A
{Homo sapiens}
Length = 140
Score = 25.0 bits (54), Expect = 4.9
Identities = 10/47 (21%), Positives = 17/47 (36%)
Query: 27 QGNVFVANRVSKLQQTIDCERLFHILGHLMIVAKKVAAKKLIRNYRV 73
+F +K Q+ +R + L++V K KK Y
Sbjct: 16 YCRLFEVPDPNKPQKLGLHQREIFLFNDLLVVTKIFQKKKNSVTYSF 62
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Length = 96
Score = 24.6 bits (53), Expect = 5.3
Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 6/70 (8%)
Query: 36 VSKLQQTIDCERLFHILGHLMIVAKKVAAKKLIRNYR------VVVNNGWEAVQFSGHLH 89
VS + + + L +L KV + +L + V + N +A+ LH
Sbjct: 14 VSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLH 73
Query: 90 LHVLGGRPLH 99
+ +G + +
Sbjct: 74 RYKIGSKKIL 83
>2km7_A Small protein A; BAME, SMPA, BAM complex, OMP85, YAET, cell
membrane, cell OU membrane, lipoprotein, membrane,
palmitate, membrane protei; NMR {Escherichia coli} PDB:
2kxx_A
Length = 102
Score = 24.1 bits (52), Expect = 7.1
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 26 PQGNVFVANRVSKLQQTIDCERLFHILG 53
QGN AN VSK++ + +++ + LG
Sbjct: 14 NQGNYLTANDVSKIRVGMTQQQVAYALG 41
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A
{Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A*
2yid_A*
Length = 868
Score = 24.4 bits (54), Expect = 9.6
Identities = 9/33 (27%), Positives = 10/33 (30%), Gaps = 11/33 (33%)
Query: 57 IVAKKVAAKKLIRNYRVVVNNGWEAVQFSGHLH 89
I K +LI YR GHL
Sbjct: 4 IEDKNARVIELIAAYRN-----------RGHLM 25
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.141 0.469
Gapped
Lambda K H
0.267 0.0544 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,675,774
Number of extensions: 87741
Number of successful extensions: 314
Number of sequences better than 10.0: 1
Number of HSP's gapped: 296
Number of HSP's successfully gapped: 36
Length of query: 103
Length of database: 6,701,793
Length adjustment: 68
Effective length of query: 35
Effective length of database: 4,803,165
Effective search space: 168110775
Effective search space used: 168110775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.8 bits)