RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5902
(103 letters)
>d1kpfa_ d.13.1.1 (A:) Protein kinase C inhibitor-1, PKCI-1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 111
Score = 56.6 bits (136), Expect = 1e-12
Identities = 32/55 (58%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Query: 50 HILGHLMIVAKKVAAKKLIRN-YRVVVNNGWEAVQFSGHLHLHVLGGRPLHWPPG 103
+LGHLMIV KK AA + YR+VVN G + Q H+HLHVLGGR +HWPPG
Sbjct: 57 SLLGHLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMHWPPG 111
>d1xqua_ d.13.1.1 (A:) Putative hydrolase {Clostridium thermocellum
[TaxId: 1515]}
Length = 113
Score = 35.2 bits (80), Expect = 2e-04
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 45 CERLFHILGHLMIVAKKVAAKKLIRN--YRVVVNNGWEAVQFSGHLHLHVLGGRPL 98
E IL + A KVA I YR++ N G A Q HLH H+LGG +
Sbjct: 54 NESNAQILIDIHKAANKVAEDLGIAEKGYRLITNCGVAAGQTVFHLHYHLLGGVDM 109
>d1fita_ d.13.1.1 (A:) FHIT (fragile histidine triad protein)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 146
Score = 31.3 bits (70), Expect = 0.009
Identities = 12/64 (18%), Positives = 23/64 (35%)
Query: 30 VFVANRVSKLQQTIDCERLFHILGHLMIVAKKVAAKKLIRNYRVVVNNGWEAVQFSGHLH 89
+ R + + + + + V V + + +G EA Q H+H
Sbjct: 36 LVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVEKHFHGTSLTFSMQDGPEAGQTVKHVH 95
Query: 90 LHVL 93
+HVL
Sbjct: 96 VHVL 99
>d1emsa1 d.13.1.1 (A:281-440) NIT-FHIT fusion protein, C-terminal
domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Length = 160
Score = 30.2 bits (67), Expect = 0.025
Identities = 12/66 (18%), Positives = 23/66 (34%)
Query: 31 FVANRVSKLQQTIDCERLFHILGHLMIVAKKVAAKKLIRNYRVVVNNGWEAVQFSGHLHL 90
RV + + V + + + + V +G +A Q H+H+
Sbjct: 54 VSPKRVVPRLTDLTDAETADLFIVAKKVQAMLEKHHNVTSTTICVQDGKDAGQTVPHVHI 113
Query: 91 HVLGGR 96
H+L R
Sbjct: 114 HILPRR 119
>d1y23a_ d.13.1.1 (A:) Hit {Bacillus subtilis [TaxId: 1423]}
Length = 139
Score = 29.9 bits (66), Expect = 0.035
Identities = 14/91 (15%), Positives = 29/91 (31%), Gaps = 1/91 (1%)
Query: 4 KVENYVCFTDSTVALCWVHGTPPQGNVFVANRVSKLQQTIDCERLFHILGHLMIVAKKVA 63
+ + + D V +G+ V + + L H + +
Sbjct: 12 DIPSAKVYEDEHVLAFLDISQVTKGHTLVIPKTHIENVYEFTDELAKQYFHAVPKIARAI 71
Query: 64 AKKLIRN-YRVVVNNGWEAVQFSGHLHLHVL 93
+ + NNG +A Q H H+H++
Sbjct: 72 RDEFEPIGLNTLNNNGEKAGQSVFHYHMHII 102
>d1vlra1 d.13.1.3 (A:146-337) mRNA decapping enzyme DcpS C-terminal
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 192
Score = 29.4 bits (66), Expect = 0.057
Identities = 8/46 (17%), Positives = 19/46 (41%), Gaps = 7/46 (15%)
Query: 51 ILGHLMIVAKKVAAKKL---IRNYRVVVNNGWEAVQFSGHLHLHVL 93
+L +++ ++ K+ RV ++ + HLH+H
Sbjct: 94 LLRNILREGQEAILKRYQVTGDRLRVYLH----YLPSYYHLHVHFT 135
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 26.2 bits (57), Expect = 0.41
Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 7/75 (9%)
Query: 28 GNVFVANRVSKLQQTIDCERL---FHILGHLMIVAKKVAAKKLIRNYRVVVNNGWEAVQF 84
GN+F+ N L ++ID + L F G+++ V A +
Sbjct: 9 GNIFIKN----LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERA 64
Query: 85 SGHLHLHVLGGRPLH 99
++ +L R +
Sbjct: 65 IEKMNGMLLNDRKVF 79
>d2oiwa1 d.38.1.1 (A:1-131) GK1870 orthologue {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 131
Score = 25.9 bits (56), Expect = 0.64
Identities = 10/96 (10%), Positives = 29/96 (30%)
Query: 7 NYVCFTDSTVALCWVHGTPPQGNVFVANRVSKLQQTIDCERLFHILGHLMIVAKKVAAKK 66
+ ++ + TP + +++ + + + +++
Sbjct: 23 TVPVWFEAGRHEIFKLFTPDLSFKRWRMVIIRMEVDYVNQMYYGQDVTVYTGIERIGNTS 82
Query: 67 LIRNYRVVVNNGWEAVQFSGHLHLHVLGGRPLHWPP 102
L + N A S +++ + GRP P
Sbjct: 83 LTIYEEIHQNGVVCAKGRSVYVNFNFDTGRPEPIPD 118
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 25.3 bits (55), Expect = 0.93
Identities = 5/76 (6%), Positives = 18/76 (23%), Gaps = 5/76 (6%)
Query: 24 TPPQGNVFVANRVSKLQQTIDCERLFHILGHLMIVAKKVAAKKLIRNYRVVVNNGWEAVQ 83
+P V+ + + + + ++ V + A
Sbjct: 15 SPKNCTVYCGG----IASGLTDQLMRQTFSP-FGQIMEIRVFPEKGYSFVRFSTHESAAH 69
Query: 84 FSGHLHLHVLGGRPLH 99
++ + G +
Sbjct: 70 AIVSVNGTTIEGHVVK 85
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 24.7 bits (53), Expect = 1.7
Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 6/77 (7%)
Query: 23 GTPPQGNVFVANRVSKLQQTIDCERLFHILGHLMIVAKKVAAKKLIRNYRVVVNNGWEAV 82
G+ + V N L Q +C+ + +L + K + R V + NG +A
Sbjct: 1 GSSGSSGILVKN----LPQDSNCQEVHDLLKDYDL--KYCYVDRNKRTAFVTLLNGEQAQ 54
Query: 83 QFSGHLHLHVLGGRPLH 99
H + G+ L
Sbjct: 55 NAIQMFHQYSFRGKDLI 71
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 24.3 bits (52), Expect = 2.0
Identities = 8/80 (10%), Positives = 28/80 (35%), Gaps = 8/80 (10%)
Query: 24 TPPQGNVFVANRVSKLQQTIDCERL----FHILGHLMIVAKKVAAKKLIRNYRVVVNNGW 79
P F+ N L + E + + + + ++ + + ++ +
Sbjct: 12 KSPPYTAFLGN----LPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDL 67
Query: 80 EAVQFSGHLHLHVLGGRPLH 99
+++ + L+ LG + +
Sbjct: 68 DSLLSALSLNEESLGNKRIR 87
>d2fbla1 d.63.1.2 (A:2-151) Hypothetical protein NE1496
{Nitrosomonas europaea [TaxId: 915]}
Length = 150
Score = 23.8 bits (51), Expect = 3.9
Identities = 8/50 (16%), Positives = 18/50 (36%)
Query: 40 QQTIDCERLFHILGHLMIVAKKVAAKKLIRNYRVVVNNGWEAVQFSGHLH 89
+Q + + L + +K + ++ +E F+GHL
Sbjct: 57 RQEYEIQIDVTQFEMLWPATEGRRVEKTRYSGKLPDGQLFELDVFAGHLS 106
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 104
Score = 23.2 bits (49), Expect = 5.7
Identities = 10/77 (12%), Positives = 19/77 (24%)
Query: 23 GTPPQGNVFVANRVSKLQQTIDCERLFHILGHLMIVAKKVAAKKLIRNYRVVVNNGWEAV 82
G+ + + + F L K + R+ +N A
Sbjct: 1 GSSGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAA 60
Query: 83 QFSGHLHLHVLGGRPLH 99
LH G+ +
Sbjct: 61 DARLRLHKTEFLGKEMK 77
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.141 0.469
Gapped
Lambda K H
0.267 0.0490 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 416,772
Number of extensions: 16647
Number of successful extensions: 78
Number of sequences better than 10.0: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 18
Length of query: 103
Length of database: 2,407,596
Length adjustment: 64
Effective length of query: 39
Effective length of database: 1,528,876
Effective search space: 59626164
Effective search space used: 59626164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.5 bits)