BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5903
(122 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YBT|A Chain A, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|B Chain B, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|C Chain C, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|D Chain D, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|E Chain E, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|F Chain F, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBU|A Chain A, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|B Chain B, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|C Chain C, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|D Chain D, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|E Chain E, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|F Chain F, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
Length = 381
Score = 65.9 bits (159), Expect = 6e-12, Method: Composition-based stats.
Identities = 24/39 (61%), Positives = 31/39 (79%)
Query: 23 RVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGL 61
++ CY+TNW+ YRPG +F P +INP LCTHLIYAF G+
Sbjct: 6 QLTCYFTNWAQYRPGLGRFMPDDINPCLCTHLIYAFAGM 44
>pdb|3FXY|A Chain A, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|B Chain B, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|C Chain C, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|D Chain D, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FY1|A Chain A, The Acidic Mammalian Chitinase Catalytic Domain In
Complex With Methylallosamidin
pdb|3FY1|B Chain B, The Acidic Mammalian Chitinase Catalytic Domain In
Complex With Methylallosamidin
pdb|3RM4|A Chain A, Amcase In Complex With Compound 1
pdb|3RM4|B Chain B, Amcase In Complex With Compound 1
pdb|3RM8|A Chain A, Amcase In Complex With Compound 2
pdb|3RM8|B Chain B, Amcase In Complex With Compound 2
pdb|3RM9|A Chain A, Amcase In Complex With Compound 3
pdb|3RM9|B Chain B, Amcase In Complex With Compound 3
pdb|3RME|A Chain A, Amcase In Complex With Compound 5
pdb|3RME|B Chain B, Amcase In Complex With Compound 5
Length = 395
Score = 65.5 bits (158), Expect = 7e-12, Method: Composition-based stats.
Identities = 24/39 (61%), Positives = 31/39 (79%)
Query: 23 RVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGL 61
++ CY+TNW+ YRPG +F P +INP LCTHLIYAF G+
Sbjct: 2 QLTCYFTNWAQYRPGLGRFMPDDINPCLCTHLIYAFAGM 40
>pdb|1HKI|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Glucoallosamidin B
pdb|1HKJ|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Methylallosamidin
pdb|1HKM|A Chain A, High Resolution Crystal Structure Of Human Chitinase In
Complex With Demethylallosamidin
Length = 365
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 33/39 (84%)
Query: 23 RVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGL 61
++VCY+TNW+ YR G A+F P++++P LCTHLIYAF G+
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGM 40
>pdb|1GUV|A Chain A, Structure Of Human Chitotriosidase
Length = 366
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 33/39 (84%)
Query: 23 RVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGL 61
++VCY+TNW+ YR G A+F P++++P LCTHLIYAF G+
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGM 40
>pdb|1LG1|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex
With Chitobiose
pdb|1LG2|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex
With Ethylene Glycol
pdb|1LQ0|A Chain A, Crystal Structure Of Human Chitotriosidase At 2.2
Angstrom Resolution
Length = 365
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 33/39 (84%)
Query: 23 RVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGL 61
++VCY+TNW+ YR G A+F P++++P LCTHLIYAF G+
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGM 40
>pdb|1HKK|A Chain A, High Resoultion Crystal Structure Of Human Chitinase In
Complex With Allosamidin
Length = 364
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 33/39 (84%)
Query: 23 RVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGL 61
++VCY+TNW+ YR G A+F P++++P LCTHLIYAF G+
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGM 40
>pdb|1WAW|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Human
Chitinase
pdb|1WB0|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argifin Against Human
Chitinase
Length = 445
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 33/39 (84%)
Query: 23 RVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGL 61
++VCY+TNW+ YR G A+F P++++P LCTHLIYAF G+
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGM 40
>pdb|4AY1|A Chain A, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|B Chain B, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|C Chain C, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|D Chain D, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|E Chain E, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|F Chain F, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|G Chain G, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|H Chain H, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|I Chain I, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|J Chain J, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|K Chain K, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|L Chain L, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
Length = 365
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 54/98 (55%), Gaps = 7/98 (7%)
Query: 23 RVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGLDKENGLRPFDK-----YQDIE 77
++VCY+TNWS R KFTP+NI+P+LC+HLIY+F ++ N + DK YQ I
Sbjct: 3 KLVCYFTNWSQDRQEPGKFTPENIDPFLCSHLIYSFASIEN-NKVIIKDKSEVMLYQTIN 61
Query: 78 QGKT-FPPLSSCANVQGCLTPTRWHQNLVFYSLERHYF 114
KT P L ++ G L ++ +V S R F
Sbjct: 62 SLKTKNPKLKILLSIGGYLFGSKGFHPMVDSSTSRLEF 99
>pdb|1E9L|A Chain A, The Crystal Structure Of Novel Mammalian Lectin Ym1
Suggests A Saccharide Binding Site
pdb|1VF8|A Chain A, The Crystal Structure Of Ym1 At 1.31 A Resolution
Length = 377
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 29/39 (74%)
Query: 23 RVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGL 61
+++CYYT+W+ RP F P NI+P LCTHLIYAF G+
Sbjct: 2 QLMCYYTSWAKDRPIEGSFKPGNIDPCLCTHLIYAFAGM 40
>pdb|1XHG|A Chain A, Crystal Structure Of A 40 Kda Signalling Protein From
Porcine (spp-40) At 2.89a Resolution
pdb|1XRV|A Chain A, Crystal Structure Of The Novel Secretory Signalling
Protein From Porcine (Spp-40) At 2.1a Resolution.
pdb|1ZBC|A Chain A, Crystal Structure Of The Porcine Signalling Protein
Liganded With The Peptide Trp-Pro-Trp (Wpw) At 2.3 A
Resolution
pdb|1ZB5|A Chain A, Recognition Of Peptide Ligands By Signalling Protein
From Porcine Mammary Gland (Spp-40): Crystal Structure
Of The Complex Of Spp-40 With A Peptide Trp-Pro-Trp At
2.45a Resolution
Length = 361
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 28/39 (71%)
Query: 23 RVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGL 61
+++CYYT+WS YR G P I+P+LCTH+IY+F +
Sbjct: 2 KLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANI 40
>pdb|1SR0|A Chain A, Crystal Structure Of Signalling Protein From
Sheep(Sps-40) At 3.0a Resolution Using Crystal Grown In
The Presence Of Polysaccharides
pdb|1ZBK|A Chain A, Recognition Of Specific Peptide Sequences By Signalling
Protein From Sheep Mammary Gland (Sps-40): Crystal
Structure Of The Complex Of Sps-40 With A Peptide
Trp-Pro-Trp At 2.9a Resolution
pdb|1ZL1|A Chain A, Crystal Structure Of The Complex Of Signalling Protein
From Sheep (Sps-40) With A Designed Peptide Trp-His-Trp
Reveals Significance Of Asn79 And Trp191 In The Complex
Formation
pdb|2FDM|A Chain A, Crystal Structure Of The Ternary Complex Of Signalling
Glycoprotein Frm Sheep (Sps-40)with Hexasaccharide
(Nag6) And Peptide Trp-Pro-Trp At 3.0a Resolution
pdb|2G41|A Chain A, Crystal Structure Of The Complex Of Sheep Signalling
Glycoprotein With Chitin Trimer At 3.0a Resolution
pdb|2G8Z|A Chain A, Crystal Structure Of The Ternary Complex Of Signalling
Protein From Sheep (Sps-40) With Trimer And Designed
Peptide At 2.5a Resolution
pdb|2DPE|A Chain A, Crystal Structure Of A Secretory 40kda Glycoprotein From
Sheep At 2.0a Resolution
pdb|2DSU|A Chain A, Binding Of Chitin-Like Polysaccharide To Protective
Signalling Factor: Crystal Structure Of The Complex
Formed Between Signalling Protein From Sheep (Sps-40)
With A Tetrasaccharide At 2.2 A Resolution
pdb|2DSV|A Chain A, Interactions Of Protective Signalling Factor With
Chitin-like Polysaccharide: Crystal Structure Of The
Complex Between Signalling Protein From Sheep (sps-40)
And A Hexasaccharide At 2.5a Resolution
pdb|2DSW|A Chain A, Binding Of Chitin-Like Polysaccharides To Protective
Signalling Factor: Crystal Structure Of The Complex Of
Signalling Protein From Sheep (Sps-40) With A
Pentasaccharide At 2.8 A Resolution
Length = 361
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 28/39 (71%)
Query: 23 RVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGL 61
+++CYYT+WS YR G P I+P+LCTH+IY+F +
Sbjct: 2 KLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANI 40
>pdb|1ZBV|A Chain A, Crystal Structure Of The Goat Signalling Protein
(Spg-40) Complexed With A Designed Peptide Trp-Pro-Trp
At 3.2a Resolution
pdb|1ZBW|A Chain A, Crystal Structure Of The Complex Formed Between
Signalling Protein From Goat Mammary Gland (Spg-40) And
A Tripeptide Trp-Pro-Trp At 2.8a Resolution
pdb|1ZU8|A Chain A, Crystal Structure Of The Goat Signalling Protein With A
Bound Trisaccharide Reveals That Trp78 Reduces The
Carbohydrate Binding Site To Half
pdb|2AOS|A Chain A, Protein-protein Interactions Of Protective Signalling
Factor: Crystal Structure Of Ternary Complex Involving
Signalling Protein From Goat (spg-40), Tetrasaccharide
And A Tripeptide Trp-pro-trp At 2.9 A Resolution
pdb|2B31|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein With Pentasaccharide At 3.1 A
Resolution Reveals Large Scale Conformational Changes
In The Residues Of Tim Barrel
pdb|2DSZ|A Chain A, Three Dimensional Structure Of A Goat Signalling Protein
Secreted During Involution
pdb|2DT0|A Chain A, Crystal Structure Of The Complex Of Goat Signalling
Protein With The Trimer Of N-acetylglucosamine At 2.45a
Resolution
pdb|2DT1|A Chain A, Crystal Structure Of The Complex Of Goat Signalling
Protein With Tetrasaccharide At 2.09 A Resolution
pdb|2DT2|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein With Pentasaccharide At 2.9a
Resolution
pdb|2DT3|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein And The Hexasaccharide At 2.28 A
Resolution
pdb|2O92|A Chain A, Crystal Structure Of A Signalling Protein (Spg-40)
Complex With Tetrasaccharide At 3.0a Resolution
pdb|2OLH|A Chain A, Crystal Structure Of A Signalling Protein (Spg-40)
Complex With Cellobiose At 2.78 A Resolution
Length = 361
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 28/39 (71%)
Query: 23 RVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGL 61
+++CYYT+WS YR G P I+P+LCTH+IY+F +
Sbjct: 2 KLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANI 40
>pdb|1SYT|A Chain A, Crystal Structure Of Signalling Protein From Goat Spg-40
In The Presense Of N,n',n''-triacetyl-chitotriose At
2.6a Resolution
Length = 361
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 28/39 (71%)
Query: 23 RVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGL 61
+++CYYT+WS YR G P I+P+LCTH+IY+F +
Sbjct: 2 KLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANI 40
>pdb|1LJY|A Chain A, Crystal Structure Of A Novel Regulatory 40 Kda Mammary
Gland Protein (Mgp-40) Secreted During Involution
Length = 361
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 28/39 (71%)
Query: 23 RVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGL 61
+++CYYT+WS YR G P I+P+LCTH+IY+F +
Sbjct: 2 KLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANI 40
>pdb|1OWQ|A Chain A, Crystal Structure Of A 40 Kda Signalling Protein
(Spc-40) Secreted During Involution
Length = 361
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 28/39 (71%)
Query: 23 RVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGL 61
+++CYYT+WS YR G P I+P+LCTH+IY+F +
Sbjct: 2 KLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANI 40
>pdb|2ESC|A Chain A, Crystal Structure Of A 40 Kda Protective Signalling
Protein From Bovine (Spc-40) At 2.1 A Resolution
Length = 361
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 28/39 (71%)
Query: 23 RVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGL 61
+++CYYT+WS YR G P I+P+LCTH+IY+F +
Sbjct: 2 KLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANI 40
>pdb|1TFV|A Chain A, Crystal Structure Of A Buffalo Signaling Glycoprotein
(Spb-40) Secreted During Involution
pdb|2O9O|A Chain A, Crystal Structure Of The Buffalo Secretory Signalling
Glycoprotein At 2.8 A Resolution
pdb|2QF8|A Chain A, Crystal Structure Of The Complex Of Buffalo Secretory
Glycoprotein With Tetrasaccharide At 2.8a Resolution
Length = 361
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 28/39 (71%)
Query: 23 RVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGL 61
+++CYYT+WS YR G P I+P+LCTH+IY+F +
Sbjct: 2 KLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANI 40
>pdb|2PI6|A Chain A, Crystal Structure Of The Sheep Signalling Glycoprotein
(Sps-40) Complex With 2-Methyl-2-4-Pentanediol At 1.65a
Resolution Reveals Specific Binding Characteristics Of
Sps-40
Length = 361
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 27/39 (69%)
Query: 23 RVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGL 61
+++CYYT+WS YR G P I+P+LCTH+IY F +
Sbjct: 2 KLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYTFANI 40
>pdb|1HJV|A Chain A, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|B Chain B, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|C Chain C, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|D Chain D, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJW|A Chain A, Crystal Structure Of Hcgp-39 In Complex With Chitin
Octamer
pdb|1HJW|B Chain B, Crystal Structure Of Hcgp-39 In Complex With Chitin
Octamer
pdb|1HJX|A Chain A, Ligand-Induced Signalling And Conformational Change Of
The 39 Kd Glycoprotein From Human Articular
Chondrocytes
pdb|1HJX|B Chain B, Ligand-Induced Signalling And Conformational Change Of
The 39 Kd Glycoprotein From Human Articular
Chondrocytes
pdb|1HJX|C Chain C, Ligand-Induced Signalling And Conformational Change Of
The 39 Kd Glycoprotein From Human Articular
Chondrocytes
pdb|1HJX|D Chain D, Ligand-Induced Signalling And Conformational Change Of
The 39 Kd Glycoprotein From Human Articular
Chondrocytes
pdb|1NWR|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWS|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWT|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWU|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
Length = 362
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 23 RVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGLDKEN 65
++VCYYT+WS YR G P ++ +LCTH+IY+F + ++
Sbjct: 2 KLVCYYTSWSQYREGDGSCFPDALDRFLCTHIIYSFANISNDH 44
>pdb|1W9P|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitors Against Aspergillus
Fumigatus, Human And Bacterial Chitinasefra
pdb|1W9P|B Chain B, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitors Against Aspergillus
Fumigatus, Human And Bacterial Chitinasefra
pdb|1W9U|A Chain A, Specificity And Affnity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Aspergillus
Fumigatus Chitinase
pdb|1W9U|B Chain B, Specificity And Affnity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Aspergillus
Fumigatus Chitinase
pdb|1W9V|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Argifin Against Aspergillus Fumigatus
pdb|1W9V|B Chain B, Specificity And Affinity Of Natural Product
Cyclopentapeptide Argifin Against Aspergillus Fumigatus
pdb|2A3A|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Theophylline
pdb|2A3A|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Theophylline
pdb|2A3B|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Caffeine
pdb|2A3B|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Caffeine
pdb|2A3C|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Pentoxifylline
pdb|2A3C|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Pentoxifylline
pdb|2A3E|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Allosamidin
pdb|2A3E|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Allosamidin
pdb|2IUZ|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With C2-Dicaffeine
pdb|2IUZ|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With C2-Dicaffeine
pdb|3CH9|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dimethylguanylurea
pdb|3CH9|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dimethylguanylurea
pdb|3CHC|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Monopeptide
pdb|3CHC|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Monopeptide
pdb|3CHD|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dipeptide
pdb|3CHD|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dipeptide
pdb|3CHE|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tripeptide
pdb|3CHE|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tripeptide
pdb|3CHF|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tetrapeptide
pdb|3CHF|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tetrapeptide
Length = 433
Score = 42.4 bits (98), Expect = 6e-05, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 17 RGSSEKRVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGLDKENG-LRPFDKYQD 75
R SS R V Y+ NW++Y PQ++ TH++YAF + E G + D + D
Sbjct: 38 RASSGYRSVVYFVNWAIY---GRNHNPQDLPVERLTHVLYAFANVRPETGEVYMTDSWAD 94
Query: 76 IEQGKTFPPLS---SCANVQGCL 95
IE K +P S + NV GC+
Sbjct: 95 IE--KHYPGDSWSDTGNNVYGCI 115
>pdb|1WNO|A Chain A, Crystal Structure Of A Native Chitinase From Aspergillus
Fumigatus Yj- 407
pdb|1WNO|B Chain B, Crystal Structure Of A Native Chitinase From Aspergillus
Fumigatus Yj- 407
Length = 395
Score = 40.0 bits (92), Expect = 4e-04, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 9/82 (10%)
Query: 18 GSSEKRVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGLDKENG-LRPFDKYQDI 76
SS R V Y+ NW++Y PQ++ TH++YAF + E G + D + DI
Sbjct: 1 ASSGYRSVVYFVNWAIY---GRNHNPQDLPVERLTHVLYAFANVRPETGEVYMTDSWADI 57
Query: 77 EQGKTFPPLS---SCANVQGCL 95
E K +P S + NV GC+
Sbjct: 58 E--KHYPGDSWSDTGNNVYGCI 77
>pdb|1D2K|A Chain A, C. Immitis Chitinase 1 At 2.2 Angstroms Resolution
pdb|1LL4|A Chain A, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|B Chain B, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|C Chain C, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|D Chain D, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
Length = 392
Score = 34.3 bits (77), Expect = 0.019, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 23 RVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGLDKENGLRPFDKYQDIEQ 78
R V Y+ NW++Y G PQ++ TH++YAF + + D + D ++
Sbjct: 4 RSVVYFVNWAIYGRG---HNPQDLKADQFTHILYAFANIRPSGEVYLSDTWADTDK 56
>pdb|1LL6|A Chain A, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|B Chain B, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|C Chain C, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|D Chain D, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
Length = 392
Score = 34.3 bits (77), Expect = 0.019, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 23 RVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGLDKENGLRPFDKYQDIEQ 78
R V Y+ NW++Y G PQ++ TH++YAF + + D + D ++
Sbjct: 4 RSVVYFVNWAIYGRG---HNPQDLKADQFTHILYAFANIRPSGEVYLSDTWADTDK 56
>pdb|1LL7|A Chain A, Structure Of The E171q Mutant Of C. Immitis Chitinase 1
pdb|1LL7|B Chain B, Structure Of The E171q Mutant Of C. Immitis Chitinase 1
Length = 392
Score = 34.3 bits (77), Expect = 0.019, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 23 RVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGLDKENGLRPFDKYQDIEQ 78
R V Y+ NW++Y G PQ++ TH++YAF + + D + D ++
Sbjct: 4 RSVVYFVNWAIYGRG---HNPQDLKADQFTHILYAFANIRPSGEVYLSDTWADTDK 56
>pdb|1JND|A Chain A, Crystal Structure Of Imaginal Disc Growth Factor-2
pdb|1JNE|A Chain A, Crystal Structure Of Imaginal Disc Growth Factor-2
Length = 420
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 24 VVCYYTNWSVYRPGTAKFTPQNINPYL--CTHLIYAFGGLDKEN 65
+VCYY + S R G K ++ L C+HL+Y + GL EN
Sbjct: 4 LVCYYDSSSYTREGLGKLLNPDLEIALQFCSHLVYGYAGLRGEN 47
>pdb|3G6L|A Chain A, The Crystal Structure Of A Chitinase Crchi1 From The
Nematophagous Fungus Clonostachys Rosea
pdb|3G6M|A Chain A, Crystal Structure Of A Chitinase Crchi1 From The
Nematophagous Fungus Clonostachys Rosea In Complex With
A Potent Inhibitor Caffeine
Length = 406
Score = 33.5 bits (75), Expect = 0.033, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 27 YYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGLDKENGLRPFDKYQDIEQ 78
Y+TNW +Y F P ++ H++Y+F L + + D Y D+E+
Sbjct: 26 YFTNWGIY---GRNFQPADLQASKILHVLYSFMNLRVDGTVYSGDTYADLEK 74
>pdb|4A5Q|A Chain A, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|B Chain B, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|C Chain C, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|D Chain D, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|E Chain E, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
Length = 546
Score = 28.5 bits (62), Expect = 0.94, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 17/53 (32%)
Query: 24 VVCYYTNWSVYRP---------------GTAKFTPQNINPYLCTHLIYAFGGL 61
V+CY+T+WS Y P + + P+ LIY+FGGL
Sbjct: 74 VLCYFTDWSQYDPRIINKEIRDTGGRSADILRLNTPDGRPF--KRLIYSFGGL 124
>pdb|3OA5|A Chain A, The Structure Of Chi1, A Chitinase From Yersinia
Entomophaga
pdb|3OA5|B Chain B, The Structure Of Chi1, A Chitinase From Yersinia
Entomophaga
Length = 574
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 17/53 (32%)
Query: 24 VVCYYTNWSVYRP---------------GTAKFTPQNINPYLCTHLIYAFGGL 61
V+CY+T+WS Y P + + P+ LIY+FGGL
Sbjct: 102 VLCYFTDWSQYDPRIINKEIRDTGGRSADILRLNTPDGRPF--KRLIYSFGGL 152
>pdb|4FCS|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 33 VYRPGTAKFTPQNINPYLCTHLIYAFGGLDKENGLRPFDKYQDIEQGKTF 82
+ R G A F+P + L +H I A G+D PFD ++ + F
Sbjct: 149 LARMGDAGFSPVEVVWLLASHSIAAADGVDPSIPGTPFDSTPEVFDSQFF 198
>pdb|4FCN|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 319
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 33 VYRPGTAKFTPQNINPYLCTHLIYAFGGLDKENGLRPFDKYQDIEQGKTF 82
+ R G A F+P + L +H I A G+D PFD ++ + F
Sbjct: 149 LARMGDAGFSPVEVVWLLASHSIAAADGVDPSIPGTPFDSTPEVFDSQFF 198
>pdb|2DGJ|A Chain A, Crystal Structure Of Ebha (756-1003 Domain) From
Staphylococcus Aureus
pdb|2DGJ|B Chain B, Crystal Structure Of Ebha (756-1003 Domain) From
Staphylococcus Aureus
Length = 257
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 60 GLDKENGLRPFDKYQDIEQGK 80
G+D EN + KY+D EQ K
Sbjct: 9 GIDDENATKQTQKYRDAEQSK 29
>pdb|2JC4|A Chain A, 3'-5' Exonuclease (Nexo) From Neisseria Meningitidis
Length = 256
Score = 25.4 bits (54), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 94 CLTPTRWHQNLVFYSLERHYFRS 116
C P +WH+ + S+ER +F++
Sbjct: 156 CYDPEKWHEKIHCSSVERQWFQN 178
>pdb|1ZGK|A Chain A, 1.35 Angstrom Structure Of The Kelch Domain Of Keap1
Length = 308
Score = 25.4 bits (54), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 26 CYYTNWSVYRPGTAKFTPQNINPYLCTH-LIYAFGGLDKENGLRPFDKYQDIE 77
CYY + +R TA T ++ H IYA GG D ++ L ++Y D+E
Sbjct: 188 CYYPERNEWRXITAXNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERY-DVE 239
>pdb|1BMG|A Chain A, Crystal Structure Of Bovine Beta2-Microglobulin
pdb|3L9R|B Chain B, Crystal Structure Of Bovine Cd1b3 With Endogenously
Bound Ligands
pdb|3L9R|D Chain D, Crystal Structure Of Bovine Cd1b3 With Endogenously
Bound Ligands
pdb|3L9R|F Chain F, Crystal Structure Of Bovine Cd1b3 With Endogenously
Bound Ligands
pdb|3L9R|H Chain H, Crystal Structure Of Bovine Cd1b3 With Endogenously
Bound Ligands
pdb|3PWV|B Chain B, An Immmunodominant Ctl Epitope From Rinderpest Virus
Presented By Cattle Mhc Class I Molecule N01801
(Bola-A11)
pdb|3PWV|E Chain E, An Immmunodominant Ctl Epitope From Rinderpest Virus
Presented By Cattle Mhc Class I Molecule N01801
(Bola-A11)
pdb|4F7C|B Chain B, Crystal Structure Of Bovine Cd1d With Bound
C12-Di-Sulfatide
pdb|4F7C|D Chain D, Crystal Structure Of Bovine Cd1d With Bound
C12-Di-Sulfatide
pdb|4F7E|B Chain B, Crystal Structure Of Bovine Cd1d With Bound
C16:0-Alpha-Galactosyl Ceramide
Length = 98
Score = 25.4 bits (54), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 16 KRGSSEKRVVCYYTNWSVYRPGTAKFTPQNINPYLC 51
++ SE+ + + +WS Y A+FTP + + Y C
Sbjct: 44 EKIKSEQSDLSFSKDWSFYLLSHAEFTPNSKDQYSC 79
>pdb|2XFX|B Chain B, Cattle Mhc Class I N01301 Presenting An 11mer From
Theileria Parva
Length = 99
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 16 KRGSSEKRVVCYYTNWSVYRPGTAKFTPQNINPYLC 51
++ SE+ + + +WS Y A+FTP + + Y C
Sbjct: 45 EKIKSEQSDLSFSKDWSFYLLSHAEFTPNSKDQYSC 80
>pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small
Molecular Based On A Co-crystallization
pdb|3VNH|A Chain A, Crystal Structure Of Keap1 Soaked With Synthetic Small
Molecular
Length = 309
Score = 25.0 bits (53), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 26 CYYTNWSVYRPGTAKFTPQNINPYLCTH-LIYAFGGLDKENGLRPFDKYQDIE 77
CYY + +R TA T ++ H IYA GG D ++ L ++Y D+E
Sbjct: 189 CYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERY-DVE 240
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.452
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,160,733
Number of Sequences: 62578
Number of extensions: 165549
Number of successful extensions: 351
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 315
Number of HSP's gapped (non-prelim): 42
length of query: 122
length of database: 14,973,337
effective HSP length: 84
effective length of query: 38
effective length of database: 9,716,785
effective search space: 369237830
effective search space used: 369237830
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)