Query psy5903
Match_columns 122
No_of_seqs 140 out of 1159
Neff 6.3
Searched_HMMs 46136
Date Fri Aug 16 21:15:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5903.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5903hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02873 GH18_IDGF The IDGF's ( 99.8 3.1E-22 6.8E-27 165.5 3.2 82 23-104 1-88 (413)
2 cd02872 GH18_chitolectin_chito 99.8 4.8E-21 1E-25 154.5 3.7 85 24-108 1-88 (362)
3 COG3325 ChiA Chitinase [Carboh 99.8 1.6E-20 3.4E-25 155.4 5.4 93 17-112 33-148 (441)
4 cd02878 GH18_zymocin_alpha Zym 99.8 6.4E-19 1.4E-23 142.6 5.8 76 23-105 1-76 (345)
5 cd06548 GH18_chitinase The GH1 99.7 6.1E-19 1.3E-23 141.0 3.6 80 24-106 1-100 (322)
6 cd02879 GH18_plant_chitinase_c 99.7 3.9E-18 8.4E-23 135.6 4.1 81 21-108 2-84 (299)
7 cd06546 GH18_CTS3_chitinase GH 99.6 1.4E-16 3E-21 124.7 5.2 81 23-103 1-85 (256)
8 smart00636 Glyco_18 Glycosyl h 99.6 7.4E-17 1.6E-21 128.5 3.6 78 23-103 1-79 (334)
9 KOG2806|consensus 99.6 9.3E-16 2E-20 127.9 3.2 90 20-109 50-140 (432)
10 PF00704 Glyco_hydro_18: Glyco 99.4 5.2E-14 1.1E-18 111.2 1.1 81 22-104 1-87 (343)
11 cd06545 GH18_3CO4_chitinase Th 99.3 1.1E-12 2.4E-17 101.7 4.6 72 24-103 1-72 (253)
12 cd00598 GH18_chitinase-like Th 99.3 1.7E-12 3.6E-17 96.5 4.1 76 24-104 1-78 (210)
13 cd06544 GH18_narbonin Narbonin 99.2 3.7E-12 8E-17 99.9 2.5 62 41-104 13-84 (253)
14 cd02871 GH18_chitinase_D-like 99.2 2.3E-11 4.9E-16 97.4 4.2 78 22-102 1-85 (312)
15 cd02876 GH18_SI-CLP Stabilin-1 99.1 1.3E-11 2.9E-16 98.5 1.0 73 23-102 4-80 (318)
16 cd06543 GH18_PF-ChiA-like PF-C 97.0 0.0004 8.6E-09 55.8 2.4 54 48-102 23-79 (294)
17 cd02874 GH18_CFLE_spore_hydrol 95.8 0.0054 1.2E-07 48.7 2.0 67 23-101 3-69 (313)
18 cd06542 GH18_EndoS-like Endo-b 95.7 0.012 2.6E-07 45.3 3.4 79 23-106 2-80 (255)
19 cd02877 GH18_hevamine_XipI_cla 91.6 0.083 1.8E-06 42.1 1.2 57 49-106 23-88 (280)
20 cd06549 GH18_trifunctional GH1 66.9 1.1 2.4E-05 35.6 -1.3 73 24-104 2-76 (298)
21 KOG4701|consensus 40.1 47 0.001 28.6 4.1 15 87-101 100-114 (568)
22 COG3469 Chitinase [Carbohydrat 35.1 60 0.0013 26.5 3.8 17 18-34 22-38 (332)
23 PF03537 Glyco_hydro_114: Glyc 24.5 71 0.0015 20.2 2.1 13 21-33 49-61 (74)
No 1
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=99.85 E-value=3.1e-22 Score=165.54 Aligned_cols=82 Identities=26% Similarity=0.573 Sum_probs=70.0
Q ss_pred eEEEEecCCcccCCCCCCCCCCCCCCCc--ccEEEEeeeeeCCCC-ceeecCcchhhcc--CCCCCCCC-cCCCccEEEe
Q psy5903 23 RVVCYYTNWSVYRPGTAKFTPQNINPYL--CTHLIYAFGGLDKEN-GLRPFDKYQDIEQ--GKTFPPLS-SCANVQGCLT 96 (122)
Q Consensus 23 ~vv~Yy~~Wa~yr~~~~~f~p~dI~~~~--cTHI~YAFa~i~~d~-~i~~~D~~~D~~~--~~~~~~lk-~~p~lk~~iS 96 (122)
++||||++|++||+++++|.|++||+.+ ||||+|||+.|++++ ++...|++.|.+. .+.+..|| ++|+||++||
T Consensus 1 ~vvcyy~~~a~~r~~~~~~~~~~i~~~~~~~THl~yaf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~p~lKvllS 80 (413)
T cd02873 1 KLVCYYDSKSYLREGLAKMSLEDLEPALQFCTHLVYGYAGIDADTYKIKSLNEDLDLDKSHYRAITSLKRKYPHLKVLLS 80 (413)
T ss_pred CEEEEecchhhcCCCCCeeCHHHcCCccccCCeEEEEEEEEeCCCCEEEecCcccchhhhHHHHHHHHHhhCCCCeEEEe
Confidence 5899999999999999999999999976 999999999999875 7888787777542 23456666 8999999999
Q ss_pred eccccCCC
Q psy5903 97 PTRWHQNL 104 (122)
Q Consensus 97 iGGW~~~~ 104 (122)
||||++++
T Consensus 81 iGGw~~~~ 88 (413)
T cd02873 81 VGGDRDTD 88 (413)
T ss_pred ecCCCCCC
Confidence 99998653
No 2
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=99.82 E-value=4.8e-21 Score=154.48 Aligned_cols=85 Identities=42% Similarity=0.907 Sum_probs=72.3
Q ss_pred EEEEecCCcccCCCCCCCCCCCCCCCcccEEEEeeeeeCCCCceeecCcchhhcc--CCCCCCCC-cCCCccEEEeeccc
Q psy5903 24 VVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGLDKENGLRPFDKYQDIEQ--GKTFPPLS-SCANVQGCLTPTRW 100 (122)
Q Consensus 24 vv~Yy~~Wa~yr~~~~~f~p~dI~~~~cTHI~YAFa~i~~d~~i~~~D~~~D~~~--~~~~~~lk-~~p~lk~~iSiGGW 100 (122)
+||||++|++||++++.|.|++||+++||||+|||+.++++|++...|++.|.+. .+.+..+| ++|++|++||||||
T Consensus 1 v~~y~~~w~~~~~~~~~~~~~~i~~~~~Thv~y~f~~i~~~g~~~~~~~~~d~~~~~~~~~~~lk~~~p~lkvlisiGG~ 80 (362)
T cd02872 1 VVCYFTNWAQYRPGNGKFVPENIDPFLCTHIIYAFAGLNPDGNIIILDEWNDIDLGLYERFNALKEKNPNLKTLLAIGGW 80 (362)
T ss_pred CEEEECcchhcCCCCCCcChhHCCcccCCEEEEeeEEECCCCCEEecCchhhhhhhHHHHHHHHHhhCCCceEEEEEcCC
Confidence 6999999999999888999999999999999999999999998888888876432 23455666 78999999999999
Q ss_pred cCCCCCCC
Q psy5903 101 HQNLVFYS 108 (122)
Q Consensus 101 ~~~~~~fs 108 (122)
+.++..|+
T Consensus 81 ~~~~~~f~ 88 (362)
T cd02872 81 NFGSAKFS 88 (362)
T ss_pred CCCcchhH
Confidence 87654444
No 3
>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism]
Probab=99.81 E-value=1.6e-20 Score=155.42 Aligned_cols=93 Identities=23% Similarity=0.416 Sum_probs=74.8
Q ss_pred cCCCCCeEEEEecCCcccCCCCCCCCCCCCCCCcccEEEEeeeeeCCCCce-------------------eecCcchhhc
Q psy5903 17 RGSSEKRVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGLDKENGL-------------------RPFDKYQDIE 77 (122)
Q Consensus 17 ~~~~~~~vv~Yy~~Wa~yr~~~~~f~p~dI~~~~cTHI~YAFa~i~~d~~i-------------------~~~D~~~D~~ 77 (122)
....++|+|+||++|++|.. ..|.|.|||++++|||+|||+.|+.++.. +..|||.+.
T Consensus 33 ~~d~~~rvvgYY~sWs~~d~--~~y~~~DIp~~qlTHInYAF~~I~~~g~~~~~~~~~~~~~~~~~~~~~~e~dp~~~~- 109 (441)
T COG3325 33 TSDDQFKVVGYYTSWSQYDR--QDYFPGDIPLDQLTHINYAFLDINSDGKSIESWVADEAALYGVPNIEGVELDPWSDP- 109 (441)
T ss_pred CCCCCceEEEEecccccCCC--cccccccCCHHHhceeeEEEEEecCCCCccccccccchhhccccCcCceeecccccc-
Confidence 45578899999999999974 48999999999999999999999988731 224555541
Q ss_pred cCCCCC---CCC-cCCCccEEEeeccccCCCCCCCCccc
Q psy5903 78 QGKTFP---PLS-SCANVQGCLTPTRWHQNLVFYSLERH 112 (122)
Q Consensus 78 ~~~~~~---~lk-~~p~lk~~iSiGGW~~~~~~fs~~~~ 112 (122)
..+.|. .+| ++|+||+++|||||++|..|+..++.
T Consensus 110 ~~G~~~~L~~lk~~~~d~k~l~SIGGWs~S~~F~~~aad 148 (441)
T COG3325 110 LKGHFGALFDLKATYPDLKTLISIGGWSDSGGFSDMAAD 148 (441)
T ss_pred ccchHHHHHHHhhhCCCceEEEeecccccCCCcchhhcC
Confidence 223443 445 89999999999999999999988875
No 4
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=99.76 E-value=6.4e-19 Score=142.56 Aligned_cols=76 Identities=17% Similarity=0.357 Sum_probs=60.7
Q ss_pred eEEEEecCCcccCCCCCCCCCCCCCCCcccEEEEeeeeeCCCCceeecCcchhhccCCCCCCCCcCCCccEEEeeccccC
Q psy5903 23 RVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGLDKENGLRPFDKYQDIEQGKTFPPLSSCANVQGCLTPTRWHQ 102 (122)
Q Consensus 23 ~vv~Yy~~Wa~yr~~~~~f~p~dI~~~~cTHI~YAFa~i~~d~~i~~~D~~~D~~~~~~~~~lk~~p~lk~~iSiGGW~~ 102 (122)
|+||||++|+++|++ ..|.|++||+++||||+|||+.++++|++...+..... ..|..+| ++|++||||||+.
T Consensus 1 ~~v~Y~~~w~~~r~~-~~~~~~~i~~~~~THi~yaf~~~~~~g~l~~~~~~~~~---~~~~~~k---~lkvllsiGG~~~ 73 (345)
T cd02878 1 KNIAYFEAYNLDRPC-LNMDVTQIDTSKYTHIHFAFANITSDFSVDVSSVQEQF---SDFKKLK---GVKKILSFGGWDF 73 (345)
T ss_pred CEEEEEChhhcCCCC-CCCCHhHCCcccCCEEEEEeEeecCCCeEeecccHHHH---HHHHhhc---CcEEEEEEeCCCC
Confidence 689999999999987 58999999999999999999999999887765432211 1233333 3999999999987
Q ss_pred CCC
Q psy5903 103 NLV 105 (122)
Q Consensus 103 ~~~ 105 (122)
++.
T Consensus 74 s~~ 76 (345)
T cd02878 74 STS 76 (345)
T ss_pred CCC
Confidence 654
No 5
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=99.75 E-value=6.1e-19 Score=141.04 Aligned_cols=80 Identities=26% Similarity=0.431 Sum_probs=59.8
Q ss_pred EEEEecCCcccCCCCCCCCCC-CCCCCcccEEEEeeeeeCCCCceeecC-cchhh--------------ccCC---CCCC
Q psy5903 24 VVCYYTNWSVYRPGTAKFTPQ-NINPYLCTHLIYAFGGLDKENGLRPFD-KYQDI--------------EQGK---TFPP 84 (122)
Q Consensus 24 vv~Yy~~Wa~yr~~~~~f~p~-dI~~~~cTHI~YAFa~i~~d~~i~~~D-~~~D~--------------~~~~---~~~~ 84 (122)
|||||++|++||+ .+.++ +||+++||||+|||+.|++++.+...+ +|.|. ...+ .+..
T Consensus 1 v~~Y~~~W~~~~~---~~~~~~~i~~~~~THl~yaf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (322)
T cd06548 1 VVGYFTNWGIYGR---NYFVTDDIPADKLTHINYAFADIDGDGGVVTSDDEAADEAAQSVDGGADTDDQPLKGNFGQLRK 77 (322)
T ss_pred CEEEeCCCcccCC---CCCcccCCChhHCcEEEEEeeeEcCCCCeEccChhhhhhccccCCcccccCCccchhHHHHHHH
Confidence 5899999999995 45677 799999999999999999998655444 33221 0112 2344
Q ss_pred CC-cCCCccEEEeeccccCCCCC
Q psy5903 85 LS-SCANVQGCLTPTRWHQNLVF 106 (122)
Q Consensus 85 lk-~~p~lk~~iSiGGW~~~~~~ 106 (122)
|| ++|++|+++|||||+.+..|
T Consensus 78 lk~~~p~lkvl~siGG~~~s~~f 100 (322)
T cd06548 78 LKQKNPHLKILLSIGGWTWSGGF 100 (322)
T ss_pred HHHhCCCCEEEEEEeCCCCCCCc
Confidence 55 79999999999999865433
No 6
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=99.72 E-value=3.9e-18 Score=135.63 Aligned_cols=81 Identities=23% Similarity=0.317 Sum_probs=60.7
Q ss_pred CCeEEEEecCCcccCCCCCCCCCCCCCCCcccEEEEeeeeeCCCC-ceeecCcchhhccCCCCCCCC-cCCCccEEEeec
Q psy5903 21 EKRVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGLDKEN-GLRPFDKYQDIEQGKTFPPLS-SCANVQGCLTPT 98 (122)
Q Consensus 21 ~~~vv~Yy~~Wa~yr~~~~~f~p~dI~~~~cTHI~YAFa~i~~d~-~i~~~D~~~D~~~~~~~~~lk-~~p~lk~~iSiG 98 (122)
.-+++|||++|+ ++|.|++||+++||||+|||+.+++++ ++...+ +.+.....+...+| ++|+||++||||
T Consensus 2 ~~~~~~Y~~~w~------~~~~~~~i~~~~~THi~yaf~~~~~~~~~~~~~~-~~~~~~~~~~~~~k~~~~~lkvlisiG 74 (299)
T cd02879 2 TIVKGGYWPAWS------EEFPPSNIDSSLFTHLFYAFADLDPSTYEVVISP-SDESEFSTFTETVKRKNPSVKTLLSIG 74 (299)
T ss_pred CeEEEEEECCCC------CCCChhHCCcccCCEEEEEEEEecCCCCEEeecc-ccHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 357899999998 379999999999999999999999876 565543 11111111223455 799999999999
Q ss_pred cccCCCCCCC
Q psy5903 99 RWHQNLVFYS 108 (122)
Q Consensus 99 GW~~~~~~fs 108 (122)
||+.++..|+
T Consensus 75 G~~~~s~~fs 84 (299)
T cd02879 75 GGGSDSSAFA 84 (299)
T ss_pred CCCCCCchhh
Confidence 9987654554
No 7
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=99.65 E-value=1.4e-16 Score=124.73 Aligned_cols=81 Identities=16% Similarity=0.081 Sum_probs=59.4
Q ss_pred eEEEEecCCcccCCCCCC-CCCCCCCCCcccEEEEeeeeeCCCCceeecCcchhhccC-CCCCCCC--cCCCccEEEeec
Q psy5903 23 RVVCYYTNWSVYRPGTAK-FTPQNINPYLCTHLIYAFGGLDKENGLRPFDKYQDIEQG-KTFPPLS--SCANVQGCLTPT 98 (122)
Q Consensus 23 ~vv~Yy~~Wa~yr~~~~~-f~p~dI~~~~cTHI~YAFa~i~~d~~i~~~D~~~D~~~~-~~~~~lk--~~p~lk~~iSiG 98 (122)
|+||||++|+.++..... +.|..++.++||||+|||+.++++|++...|++.+.+.. ....+++ +.+++|++||||
T Consensus 1 r~v~y~~~~~~~~~~~~~~~~~~~~~~~~~THvi~af~~i~~~G~l~~~d~~~~~~~~~~~~~~i~~~~~~g~KVllSiG 80 (256)
T cd06546 1 RLVIYYQTTHPSNGDPISSLLLVTEKGIALTHLIVAALHINDDGNIHLNDHPPDHPRFTTLWTELAILQSSGVKVMGMLG 80 (256)
T ss_pred CEEEEEccEECCCCCcccccccccCCCCCCceEEEEEEEECCCCeEEECCCCCCcchhhHHHHHHHHHHhCCCEEEEEEC
Confidence 699999999887654333 334467889999999999999999988877765443211 1122332 579999999999
Q ss_pred cccCC
Q psy5903 99 RWHQN 103 (122)
Q Consensus 99 GW~~~ 103 (122)
||+.+
T Consensus 81 G~~~~ 85 (256)
T cd06546 81 GAAPG 85 (256)
T ss_pred CCCCC
Confidence 99744
No 8
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=99.65 E-value=7.4e-17 Score=128.47 Aligned_cols=78 Identities=31% Similarity=0.551 Sum_probs=64.7
Q ss_pred eEEEEecCCcccCCCCCCCCCCCCCCCcccEEEEeeeeeCCCCceeecCcchhhccCCCCCCCC-cCCCccEEEeecccc
Q psy5903 23 RVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGLDKENGLRPFDKYQDIEQGKTFPPLS-SCANVQGCLTPTRWH 101 (122)
Q Consensus 23 ~vv~Yy~~Wa~yr~~~~~f~p~dI~~~~cTHI~YAFa~i~~d~~i~~~D~~~D~~~~~~~~~lk-~~p~lk~~iSiGGW~ 101 (122)
+++|||++|+.++ +.|.|++||.++||||+|+|+.++++|++...|++.|+.....+..+| ++|++|++++||||+
T Consensus 1 ~~~~Y~~~w~~~~---~~~~~~~~~~~~~thv~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~kvl~svgg~~ 77 (334)
T smart00636 1 RVVGYFTNWGVYG---RNFPVDDIPASKLTHIIYAFANIDPDGTVTIGDEWADIGNFGQLKALKKKNPGLKVLLSIGGWT 77 (334)
T ss_pred CEEEEECchhccC---CCCChhHCCcccCcEEEEeeeeeCCCCCEeeCCcchhhhhHHHHHHHHHhCCCCEEEEEEeCCC
Confidence 5899999999876 579999999999999999999999999888777776643322344555 679999999999997
Q ss_pred CC
Q psy5903 102 QN 103 (122)
Q Consensus 102 ~~ 103 (122)
.+
T Consensus 78 ~s 79 (334)
T smart00636 78 ES 79 (334)
T ss_pred CC
Confidence 64
No 9
>KOG2806|consensus
Probab=99.57 E-value=9.3e-16 Score=127.88 Aligned_cols=90 Identities=20% Similarity=0.220 Sum_probs=67.1
Q ss_pred CCCeEEEEecCCcccCCCCCCCCCCCCCCCcccEEEEeeeeeCCCCceeecCcchhhccCCCCCCCC-cCCCccEEEeec
Q psy5903 20 SEKRVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGLDKENGLRPFDKYQDIEQGKTFPPLS-SCANVQGCLTPT 98 (122)
Q Consensus 20 ~~~~vv~Yy~~Wa~yr~~~~~f~p~dI~~~~cTHI~YAFa~i~~d~~i~~~D~~~D~~~~~~~~~lk-~~p~lk~~iSiG 98 (122)
....++||+..|++||++...+.++++++.+|||++||||.++.++.+.................+| .+|+||+|||||
T Consensus 50 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~TH~vfafa~~~~~~~~~~~~~~~~~~f~~~~~~~k~~n~~vK~llSIG 129 (432)
T KOG2806|consen 50 TAQNTVCEKSIVGYYPSRIGPETLEDQDPLKCTHLVYAFAKMKRVGYVVFCGARTMNRFSSYNQTAKSSNPTVKVMISIG 129 (432)
T ss_pred cCccccccceeEEEeCCCCCCCCccccChhhcCcceEEEeeecccccEEeccchhhhhhHHHHHHHHhhCCCceEEEEec
Confidence 4478999999999999876578999999999999999999999998544433222111112234555 789999999999
Q ss_pred cccCCCCCCCC
Q psy5903 99 RWHQNLVFYSL 109 (122)
Q Consensus 99 GW~~~~~~fs~ 109 (122)
||..+++.|++
T Consensus 130 G~~~ns~~fs~ 140 (432)
T KOG2806|consen 130 GSHGNSGLFSL 140 (432)
T ss_pred CCCCCccchhh
Confidence 99544555543
No 10
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=99.40 E-value=5.2e-14 Score=111.19 Aligned_cols=81 Identities=36% Similarity=0.614 Sum_probs=59.5
Q ss_pred CeEEEEecCCcccCCCCCCCCCCCCCCCcccEEEEeeeeeCCCCceeec-----CcchhhccCCCCCCCC-cCCCccEEE
Q psy5903 22 KRVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGLDKENGLRPF-----DKYQDIEQGKTFPPLS-SCANVQGCL 95 (122)
Q Consensus 22 ~~vv~Yy~~Wa~yr~~~~~f~p~dI~~~~cTHI~YAFa~i~~d~~i~~~-----D~~~D~~~~~~~~~lk-~~p~lk~~i 95 (122)
+++||||.+|+.++++ .|.+++||.++||||+|+|+.++.++.+... ....+......+..+| ++|++|+++
T Consensus 1 ~~vv~Y~~~~~~~~~~--~~~~~~i~~~~~t~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvll 78 (343)
T PF00704_consen 1 KRVVGYYSNWNSYRPG--SYKIEDIPWSKCTHIVYAFAGIDPNGNLNYPWNFDDDNDGDSSGFKNLKELKAKNPGVKVLL 78 (343)
T ss_dssp BEEEEEEEGGGGSSTG--CSHGGGSHTTTESEEEEEEEEEETTTTEEEGTTTECSSTTHHHHHHHHHHHHHHHTT-EEEE
T ss_pred CEEEEEECCcCCCCCC--CCCHHHCCcccCCEEEEEeeeecCCCceecccccccccCccccchhHHHHHHhhccCceEEE
Confidence 5899999999998854 6899999999999999999999999865321 1111111111233444 789999999
Q ss_pred eeccccCCC
Q psy5903 96 TPTRWHQNL 104 (122)
Q Consensus 96 SiGGW~~~~ 104 (122)
|||||..+.
T Consensus 79 sigg~~~~~ 87 (343)
T PF00704_consen 79 SIGGWGMSS 87 (343)
T ss_dssp EEEETTSSH
T ss_pred Eeccccccc
Confidence 999996554
No 11
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=99.33 E-value=1.1e-12 Score=101.72 Aligned_cols=72 Identities=18% Similarity=0.161 Sum_probs=55.0
Q ss_pred EEEEecCCcccCCCCCCCCCCCCCCCcccEEEEeeeeeCCCCceeecCcchhhccCCCCCCCCcCCCccEEEeeccccCC
Q psy5903 24 VVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGLDKENGLRPFDKYQDIEQGKTFPPLSSCANVQGCLTPTRWHQN 103 (122)
Q Consensus 24 vv~Yy~~Wa~yr~~~~~f~p~dI~~~~cTHI~YAFa~i~~d~~i~~~D~~~D~~~~~~~~~lk~~p~lk~~iSiGGW~~~ 103 (122)
|||||++|..+. ..++++|..+||||+|+|+.++++|++...++..++.. ..... +.+++|+++|||||+.+
T Consensus 1 vigyy~~w~~~~-----~~~~~~~~~~lThv~~~f~~i~~~G~l~~~~~~~~~~~--~~~~~-~~~~~kvl~sigg~~~~ 72 (253)
T cd06545 1 VVGYLPNYDDLN-----ALSPTIDFSKLTHINLAFANPDANGTLNANPVRSELNS--VVNAA-HAHNVKILISLAGGSPP 72 (253)
T ss_pred CEEEeCCccccc-----CCcccCChhhCCeEEEEEEEECCCCeEEecCcHHHHHH--HHHHH-HhCCCEEEEEEcCCCCC
Confidence 689999998753 37999999999999999999999998776654433221 11112 45799999999999654
No 12
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=99.31 E-value=1.7e-12 Score=96.47 Aligned_cols=76 Identities=29% Similarity=0.569 Sum_probs=55.2
Q ss_pred EEEEecCCcccCCCCCCCCCCCCCCCcccEEEEeeeeeCCCCceee-cCcchhhccCCCCCCCC-cCCCccEEEeecccc
Q psy5903 24 VVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGLDKENGLRP-FDKYQDIEQGKTFPPLS-SCANVQGCLTPTRWH 101 (122)
Q Consensus 24 vv~Yy~~Wa~yr~~~~~f~p~dI~~~~cTHI~YAFa~i~~d~~i~~-~D~~~D~~~~~~~~~lk-~~p~lk~~iSiGGW~ 101 (122)
+||||.+|..++.+ .|..++.++||||+|+|+.+++++.+.. .+...+ .....+..++ .+|++|+++|||||.
T Consensus 1 vv~y~~~w~~~~~~----~~~~~~~~~~thvi~~f~~v~~~~~~~~~~~~~~~-~~~~~i~~l~~~~~g~kv~~sigg~~ 75 (210)
T cd00598 1 VICYYDGWSSGRGP----DPTDIPLSLCTHIIYAFAEISSDGSLNLFGDKSEE-PLKGALEELASKKPGLKVLISIGGWT 75 (210)
T ss_pred CEEEEccccccCCC----ChhhCCcccCCEEEEeeEEECCCCCEecccCcccH-HHHHHHHHHHHhCCCCEEEEEEcCCC
Confidence 58999999988732 2899999999999999999998886543 111111 1112244444 459999999999997
Q ss_pred CCC
Q psy5903 102 QNL 104 (122)
Q Consensus 102 ~~~ 104 (122)
.+.
T Consensus 76 ~~~ 78 (210)
T cd00598 76 DSS 78 (210)
T ss_pred CCC
Confidence 554
No 13
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=99.23 E-value=3.7e-12 Score=99.93 Aligned_cols=62 Identities=11% Similarity=0.094 Sum_probs=43.5
Q ss_pred CCCCCCCCCc--ccEEEEeee-eeCC-----CCceeecCcchhh-ccCCCCCCCC-cCCCccEEEeeccccCCC
Q psy5903 41 FTPQNINPYL--CTHLIYAFG-GLDK-----ENGLRPFDKYQDI-EQGKTFPPLS-SCANVQGCLTPTRWHQNL 104 (122)
Q Consensus 41 f~p~dI~~~~--cTHI~YAFa-~i~~-----d~~i~~~D~~~D~-~~~~~~~~lk-~~p~lk~~iSiGGW~~~~ 104 (122)
..++|||.++ ||||+|||| ..+. +++.. ..|.+. .....+..|| ++|+||++||||||+.++
T Consensus 13 ~~~~dip~~~~~~thii~aFa~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~lK~~~p~lKvllSiGG~~~~~ 84 (253)
T cd06544 13 VTFSDVPINPKVEFHFILSFAIDYDTESNPTNGKFN--PYWDTENLTPEAVKSIKAQHPNVKVVISIGGRGVQN 84 (253)
T ss_pred ccccccCCCCCeeEEEEEEeeeecccccCCCCCccc--cccCccccCHHHHHHHHHhCCCcEEEEEeCCCCCCC
Confidence 4699999999 999999999 4543 23222 223221 1223456677 899999999999998753
No 14
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=99.17 E-value=2.3e-11 Score=97.38 Aligned_cols=78 Identities=15% Similarity=0.131 Sum_probs=50.6
Q ss_pred CeEEEEecCCcccCCCCCCCCCCCCCCCcccEEEEeeeeeCCCCceeec-------CcchhhccCCCCCCCCcCCCccEE
Q psy5903 22 KRVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGLDKENGLRPF-------DKYQDIEQGKTFPPLSSCANVQGC 94 (122)
Q Consensus 22 ~~vv~Yy~~Wa~yr~~~~~f~p~dI~~~~cTHI~YAFa~i~~d~~i~~~-------D~~~D~~~~~~~~~lk~~p~lk~~ 94 (122)
+|+||||++|+.+|.+. .+.+ ++.++.||||+|||+.++++++.... +...+.+.......+ +..++|++
T Consensus 1 k~~vgY~~~w~~~~~~~-~~~~-~~~~~~yt~i~~AF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-q~~G~KVl 77 (312)
T cd02871 1 KVLVGYWHNWDNGAGSG-RQDL-DDVPSKYNVINVAFAEPTSDGGGEVTFNNGSSPGGYSPAEFKADIKAL-QAKGKKVL 77 (312)
T ss_pred CeEEEecCcccCCCCCC-CCCc-ccCCCCCCEEEEcceeecCCCceeEeecccCCcccCChHHHHHHHHHH-HHCCCEEE
Confidence 58999999999998653 2334 44559999999999999877643211 111100110111222 45689999
Q ss_pred EeeccccC
Q psy5903 95 LTPTRWHQ 102 (122)
Q Consensus 95 iSiGGW~~ 102 (122)
||||||+.
T Consensus 78 lSiGG~~~ 85 (312)
T cd02871 78 ISIGGANG 85 (312)
T ss_pred EEEeCCCC
Confidence 99999964
No 15
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=99.12 E-value=1.3e-11 Score=98.48 Aligned_cols=73 Identities=14% Similarity=0.180 Sum_probs=55.0
Q ss_pred eEEEEecCCcccCCCCCCCCCCCCCCCcccEEEEeeeeeCCCCc-eeecCcchhhccCCCCCCCC-cCCCccEE--Eeec
Q psy5903 23 RVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGLDKENG-LRPFDKYQDIEQGKTFPPLS-SCANVQGC--LTPT 98 (122)
Q Consensus 23 ~vv~Yy~~Wa~yr~~~~~f~p~dI~~~~cTHI~YAFa~i~~d~~-i~~~D~~~D~~~~~~~~~lk-~~p~lk~~--iSiG 98 (122)
.++|||++|+.+ .|.+.+++.++||||+|+|+.|+++|. +...+ ..|.+. ..+..+| ++|++|++ |++|
T Consensus 4 ~~~~y~~~W~~~-----~~~~~~~~~~~lthv~~~f~~i~~~g~~~~~~~-~~~~~~-~~~~~lk~~~~~lkvlp~i~~g 76 (318)
T cd02876 4 PVLGYVTPWNSH-----GYDVAKKFAAKFTHVSPVWLQIKRKGNKFVIEG-THDIDK-GWIEEVRKANKNIKILPRVLFE 76 (318)
T ss_pred ceEEEEcCcCcc-----chHHHHHHhccCCEecceEEEEecCCCeeeeec-Ccchhh-HHHHHHHhhCCCcEEEeEEEEC
Confidence 589999999764 488999999999999999999998874 43322 233322 1344566 67999999 7889
Q ss_pred cccC
Q psy5903 99 RWHQ 102 (122)
Q Consensus 99 GW~~ 102 (122)
||+.
T Consensus 77 g~~~ 80 (318)
T cd02876 77 GWSY 80 (318)
T ss_pred CCCH
Confidence 9963
No 16
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=97.03 E-value=0.0004 Score=55.76 Aligned_cols=54 Identities=9% Similarity=-0.239 Sum_probs=32.7
Q ss_pred CCcccEEEEeeeeeCCCCceeecCc-chh--hccCCCCCCCCcCCCccEEEeeccccC
Q psy5903 48 PYLCTHLIYAFGGLDKENGLRPFDK-YQD--IEQGKTFPPLSSCANVQGCLTPTRWHQ 102 (122)
Q Consensus 48 ~~~cTHI~YAFa~i~~d~~i~~~D~-~~D--~~~~~~~~~lk~~p~lk~~iSiGGW~~ 102 (122)
...|+||++||+.++.++++..... ..+ ......+..+ +.-++|++||+|||..
T Consensus 23 ~~g~~~v~lAFi~~~~~~~~~w~g~~~~~~~~~~~~~i~~l-k~~G~kViiS~GG~~g 79 (294)
T cd06543 23 ATGVKAFTLAFIVASGGCKPAWGGSYPLDQGGWIKSDIAAL-RAAGGDVIVSFGGASG 79 (294)
T ss_pred HcCCCEEEEEEEEcCCCCcccCCCCCCcccchhHHHHHHHH-HHcCCeEEEEecCCCC
Confidence 4589999999998876655433221 001 0111112333 3446899999999963
No 17
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=95.81 E-value=0.0054 Score=48.72 Aligned_cols=67 Identities=18% Similarity=0.166 Sum_probs=43.5
Q ss_pred eEEEEecCCcccCCCCCCCCCCCCCCCcccEEEEeeeeeCCCCceeecCcchhhccCCCCCCCCcCCCccEEEeecccc
Q psy5903 23 RVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGLDKENGLRPFDKYQDIEQGKTFPPLSSCANVQGCLTPTRWH 101 (122)
Q Consensus 23 ~vv~Yy~~Wa~yr~~~~~f~p~dI~~~~cTHI~YAFa~i~~d~~i~~~D~~~D~~~~~~~~~lk~~p~lk~~iSiGGW~ 101 (122)
.+++||+.|... .+..-.=..+++|||.+....++++|.+.... ... +....+..++|++++||||+
T Consensus 3 ~~~g~~~~~~~~-----~~~~~~~~~~~lt~v~p~w~~~~~~g~~~~~~-~~~------~~~~a~~~~~kv~~~i~~~~ 69 (313)
T cd02874 3 EVLGYYTPRNGS-----DYESLRANAPYLTYIAPFWYGVDADGTLTGLP-DER------LIEAAKRRGVKPLLVITNLT 69 (313)
T ss_pred eEEEEEecCCCc-----hHHHHHHhcCCCCEEEEEEEEEcCCCCCCCCC-CHH------HHHHHHHCCCeEEEEEecCC
Confidence 489999998643 12121224678999999999999988743321 111 11111334899999999996
No 18
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=95.66 E-value=0.012 Score=45.32 Aligned_cols=79 Identities=10% Similarity=0.082 Sum_probs=43.7
Q ss_pred eEEEEecCCcccCCCCCCCCCCCCCCCcccEEEEeeeeeCCCCceeecCcchhhccCCCCCCCCcCCCccEEEeeccccC
Q psy5903 23 RVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGLDKENGLRPFDKYQDIEQGKTFPPLSSCANVQGCLTPTRWHQ 102 (122)
Q Consensus 23 ~vv~Yy~~Wa~yr~~~~~f~p~dI~~~~cTHI~YAFa~i~~d~~i~~~D~~~D~~~~~~~~~lk~~p~lk~~iSiGGW~~ 102 (122)
+.+|||.+|.-.-. .....+.++| +.+..|+..++.++.++.-. ...+.+ +.......+ +..++|+++|||||..
T Consensus 2 ~~~~y~~~~~~~~~-~~~~~l~~~p-ds~D~v~lf~~~~~~~~~~~-~~~~~~-~~~~~i~~l-~~kG~KVl~sigg~~~ 76 (255)
T cd06542 2 ISFGYFEVWDDKGA-SLQESLLNLP-DSVDMVSLFAANINLDAATA-VQFLLT-NKETYIRPL-QAKGTKVLLSILGNHL 76 (255)
T ss_pred eEEEEEEecCCcCc-ccccccccCC-CcceEEEEcccccCcccccc-hhhhhH-HHHHHHHHH-hhCCCEEEEEECCCCC
Confidence 57899999974322 2345678887 55777776334444332100 000000 000011122 4568999999999987
Q ss_pred CCCC
Q psy5903 103 NLVF 106 (122)
Q Consensus 103 ~~~~ 106 (122)
+..+
T Consensus 77 ~~~~ 80 (255)
T cd06542 77 GAGF 80 (255)
T ss_pred CCCc
Confidence 6654
No 19
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=91.63 E-value=0.083 Score=42.14 Aligned_cols=57 Identities=11% Similarity=0.033 Sum_probs=31.5
Q ss_pred CcccEEEEeeeeeCCCCceeecCcchhhccCC---CCCCC----C--cCCCccEEEeeccccCCCCC
Q psy5903 49 YLCTHLIYAFGGLDKENGLRPFDKYQDIEQGK---TFPPL----S--SCANVQGCLTPTRWHQNLVF 106 (122)
Q Consensus 49 ~~cTHI~YAFa~i~~d~~i~~~D~~~D~~~~~---~~~~l----k--~~p~lk~~iSiGGW~~~~~~ 106 (122)
..++-|+-||+..-.++..-..+ .+...... .-+++ | +.+++|++||||||+.+..+
T Consensus 23 ~~~dii~i~Fl~~~~~~~~p~~n-~~~~c~~~~~~~c~~~~~dI~~cq~~G~KVlLSIGG~~~~~~~ 88 (280)
T cd02877 23 GNYDIVNISFLNVFGSGGTPGLN-FAGHCGGSTYPNCPQLGADIKHCQSKGKKVLLSIGGAGGSYSL 88 (280)
T ss_pred CCccEEEEEeEcccCCCCCcccC-ccccCcccccccchhHHHHHHHHHHCCCEEEEEccCCCCCcCC
Confidence 36788999998654332111111 00000000 11233 3 68899999999999866444
No 20
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=66.91 E-value=1.1 Score=35.60 Aligned_cols=73 Identities=14% Similarity=0.109 Sum_probs=42.5
Q ss_pred EEEEecCCcccCCCCCCCCCCCCCCCcccEEEEeeeeeC-CCCceeecCcchhhccCCCCCCCC-cCCCccEEEeecccc
Q psy5903 24 VVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGLD-KENGLRPFDKYQDIEQGKTFPPLS-SCANVQGCLTPTRWH 101 (122)
Q Consensus 24 vv~Yy~~Wa~yr~~~~~f~p~dI~~~~cTHI~YAFa~i~-~d~~i~~~D~~~D~~~~~~~~~lk-~~p~lk~~iSiGGW~ 101 (122)
+++||..|.- ..+.--.-....+|||.--...+. ++|.+... .|.+.......+| ..|.++++.+++||.
T Consensus 2 ~l~~~~~w~~-----~s~~sl~~~~~~l~~vsP~W~~~~~~~g~l~~~---~d~~~~~~~~~~k~~~~~l~~~~~~~~~~ 73 (298)
T cd06549 2 ALAFYTPWDD-----ASFASLKRHAPRLDWLVPEWLNLTGPEGRIDVF---VDPQGVAIIAAAKAHPKVLPLVQNISGGA 73 (298)
T ss_pred eeEEEecCCh-----hhHHHHHHhhccCCEEeceeEEEecCCCceecc---CChHHHHHHHHHHcCCceeEEEEecCCCC
Confidence 6899999932 122222233458999998888786 56766431 1111100112233 568889999999886
Q ss_pred CCC
Q psy5903 102 QNL 104 (122)
Q Consensus 102 ~~~ 104 (122)
+++
T Consensus 74 ~~~ 76 (298)
T cd06549 74 WDG 76 (298)
T ss_pred CCH
Confidence 553
No 21
>KOG4701|consensus
Probab=40.11 E-value=47 Score=28.57 Aligned_cols=15 Identities=7% Similarity=0.149 Sum_probs=13.1
Q ss_pred cCCCccEEEeecccc
Q psy5903 87 SCANVQGCLTPTRWH 101 (122)
Q Consensus 87 ~~p~lk~~iSiGGW~ 101 (122)
+-.++|||+|+||..
T Consensus 100 QS~GiKVlLSLGG~~ 114 (568)
T KOG4701|consen 100 QSNGIKVLLSLGGYN 114 (568)
T ss_pred HhcCeEEEEeccCcc
Confidence 567899999999994
No 22
>COG3469 Chitinase [Carbohydrate transport and metabolism]
Probab=35.05 E-value=60 Score=26.47 Aligned_cols=17 Identities=35% Similarity=0.599 Sum_probs=13.0
Q ss_pred CCCCCeEEEEecCCccc
Q psy5903 18 GSSEKRVVCYYTNWSVY 34 (122)
Q Consensus 18 ~~~~~~vv~Yy~~Wa~y 34 (122)
..+.+++||||-+|---
T Consensus 22 ~~~~KvLvGyWHnw~sg 38 (332)
T COG3469 22 DISNKVLVGYWHNWKSG 38 (332)
T ss_pred ccccceEEEeeeccccc
Confidence 33567999999999653
No 23
>PF03537 Glyco_hydro_114: Glycoside-hydrolase family GH114; InterPro: IPR004352 Eighty-one archaeal-like genes, ranging in size from 4-20kb, are clustered in 15 regions of the Thermotoga maritima genome []. Conservation of gene order between T. maritima and Archaea in many of these regions suggests that lateral gene transfer may have occurred between thermophilic Eubacteria and Archaea []. One of the T. maritima sequences (hypothetical protein TM1410) shares similarity with Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1477 and with hypothetical protein DR0705 from Deinococcus radiodurans. The sequences are characterised by relatively variable N- and C-terminal domains, and a more conserved central domain. They share no similarity with any other known, functionally or structurally characterised proteins. ; PDB: 2AAM_F.
Probab=24.53 E-value=71 Score=20.22 Aligned_cols=13 Identities=38% Similarity=0.846 Sum_probs=9.1
Q ss_pred CCeEEEEecCCcc
Q psy5903 21 EKRVVCYYTNWSV 33 (122)
Q Consensus 21 ~~~vv~Yy~~Wa~ 33 (122)
..++|||++--++
T Consensus 49 G~~vicY~s~Gs~ 61 (74)
T PF03537_consen 49 GKKVICYFSIGSA 61 (74)
T ss_dssp T-EEEEEEESSEE
T ss_pred CCEEEEEEeCcee
Confidence 5899999986433
Done!