RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5903
(122 letters)
>3qok_A Putative chitinase II; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, glycosyl hydrolases
family 18; 2.60A {Klebsiella pneumoniae subsp}
Length = 420
Score = 90.6 bits (225), Expect = 7e-23
Identities = 12/74 (16%), Positives = 21/74 (28%), Gaps = 1/74 (1%)
Query: 4 TLCSLLLSDIRVKRGSSEKRVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGLDK 63
L + L + V Y+ G ++ THL Y+FG +
Sbjct: 8 PLLAALPLLCASALSAQPLMSVGYFNGGGDVTAG-PGGDIDKLDVRQITHLNYSFGLIYN 66
Query: 64 ENGLRPFDKYQDIE 77
+ +D
Sbjct: 67 DEKDETNAALKDPA 80
>4ay1_A Chitinase-3-like protein 2; chilectin, lectin,
chitooligosaccharide, pseudochitinase, HY; HET: NAG;
1.95A {Homo sapiens}
Length = 365
Score = 90.0 bits (224), Expect = 9e-23
Identities = 25/54 (46%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Query: 22 KRVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGLDKENGLRPFDKYQD 75
++VCY+TNWS R KFTP+NI+P+LC+HLIY+F ++ N + DK +
Sbjct: 2 YKLVCYFTNWSQDRQEPGKFTPENIDPFLCSHLIYSFASIE-NNKVIIKDKSEV 54
>2pi6_A Chitinase-3-like protein 1; complex, signaling protein; HET: NAG
MAN; 1.65A {Ovis aries} SCOP: c.1.8.5 d.26.3.1 PDB:
2dpe_A* 1sr0_A* 1zl1_A* 1zbk_A* 2dsu_A* 2dsv_A* 2dsw_A*
2fdm_A* 2g41_A* 2g8z_A* 2dt1_A* 1zbv_A* 1zu8_A* 2aos_A*
2b31_A* 1zbw_A* 2dt0_A* 2dsz_A* 2dt2_A* 2dt3_A* ...
Length = 361
Score = 88.1 bits (219), Expect = 3e-22
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 23 RVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGLDKENGLRPFD 71
+++CYYT+WS YR G P I+P+LCTH+IY F + N + ++
Sbjct: 2 KLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYTFANIS-NNEIDTWE 49
>1jnd_A Imaginal DISC growth factor-2; IDGF, chitinase, insulin recep
heparin, hormone-growth factor complex; HET: NAG BMA
MAN; 1.30A {Drosophila melanogaster} SCOP: c.1.8.5
d.26.3.1 PDB: 1jne_A*
Length = 420
Score = 87.9 bits (218), Expect = 7e-22
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 23 RVVCYYTNWSVYRPGTAKFTPQNINPYL--CTHLIYAFGGLDKENG-LRPFDKYQDIEQG 79
+VCYY + S R G K ++ L C+HL+Y + GL EN ++ DI +
Sbjct: 3 NLVCYYDSSSYTREGLGKLLNPDLEIALQFCSHLVYGYAGLRGENLQAYSMNENLDIYKH 62
>1vf8_A YM1, secretory protein; chitinase, CHI-lectin, structural
plasticity, functional versatility, immune system;
1.31A {Mus musculus} SCOP: c.1.8.5 d.26.3.1 PDB: 1e9l_A
Length = 377
Score = 87.4 bits (217), Expect = 8e-22
Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 23 RVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGLDKENGLRPFDKYQD 75
+++CYYT+W+ RP F P NI+P LCTHLIYAF G+ N + +
Sbjct: 2 QLMCYYTSWAKDRPIEGSFKPGNIDPCLCTHLIYAFAGMQ-NNEITYTHEQDL 53
>3fy1_A Amcase, TSA1902, acidic mammalian chitinase; structure,
crystallography, asthma,inhibitor, chitin degradation,
methylallosamidin; HET: NA1 NAA AMI; 1.70A {Homo
sapiens} PDB: 3fxy_A* 3rm4_A* 3rm8_A* 3rm9_A* 3rme_A*
2ybt_A* 2ybu_A*
Length = 395
Score = 86.7 bits (215), Expect = 2e-21
Identities = 25/49 (51%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Query: 23 RVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGLDKENGLRPFD 71
++ CY+TNW+ YRPG +F P +INP LCTHLIYAF G+ N + +
Sbjct: 2 QLTCYFTNWAQYRPGLGRFMPDDINPCLCTHLIYAFAGMQ-NNEITTIE 49
>1w9p_A Chitinase; peptide inhibitors, argifin, argadin, glycosidase,
hydrolase; 1.7A {Aspergillus fumigatus} SCOP: c.1.8.5
d.26.3.1 PDB: 1w9u_A* 1w9v_A* 2a3a_A* 2a3b_A* 2a3c_A*
2a3e_A* 2iuz_A* 3ch9_A 3chc_A* 3chd_A* 3che_A* 3chf_A*
1wno_A*
Length = 433
Score = 86.3 bits (214), Expect = 3e-21
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 17 RGSSEKRVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGLDKENG-LRPFDKYQD 75
R SS R V Y+ NW++Y PQ++ TH++YAF + E G + D + D
Sbjct: 38 RASSGYRSVVYFVNWAIYGR---NHNPQDLPVERLTHVLYAFANVRPETGEVYMTDSWAD 94
Query: 76 IEQGKTFPPLSS---CANVQGCL 95
IE K +P S NV GC+
Sbjct: 95 IE--KHYPGDSWSDTGNNVYGCI 115
>3g6m_A Chitinase, crchi1; inhibitor, caffeine, glycosidase, hydrolas
hydrolase inhibitor complex; HET: CFF; 1.65A
{Bionectria ochroleuca} PDB: 3g6l_A*
Length = 406
Score = 85.8 bits (213), Expect = 4e-21
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 8/80 (10%)
Query: 19 SSEKRVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGLDKENGLRPFDKYQDIEQ 78
++ Y+TNW +Y F P ++ H++Y+F L + + D Y D+E
Sbjct: 18 ATGSINAVYFTNWGIYGR---NFQPADLQASKILHVLYSFMNLRVDGTVYSGDTYADLE- 73
Query: 79 GKTFPPLSS---CANVQGCL 95
K + S N GC+
Sbjct: 74 -KHYSDDSWNDIGTNAYGCV 92
>1wb0_A Chitinase 1, chitotriosidase 1; cyclopentapeptide inhibitors,
chitinase inhibitors, carbohyd metabolism, chitin
degradation, chitin-binding; HET: VR0 MEA; 1.65A {Homo
sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A
1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A*
Length = 445
Score = 85.5 bits (212), Expect = 6e-21
Identities = 23/40 (57%), Positives = 33/40 (82%)
Query: 23 RVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGLD 62
++VCY+TNW+ YR G A+F P++++P LCTHLIYAF G+
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMT 41
>1ll7_A Chitinase 1; beta-alpha barrel, hydrolase; 2.00A {Coccidioides
immitis} SCOP: c.1.8.5 d.26.3.1 PDB: 1d2k_A 1ll4_A*
1ll6_A
Length = 392
Score = 84.2 bits (209), Expect = 1e-20
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Query: 22 KRVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGLDKENGLRPFDKYQDIEQGKT 81
R V Y+ NW++Y G PQ++ TH++YAF + + D + D + K
Sbjct: 3 FRSVVYFVNWAIYGRG---HNPQDLKADQFTHILYAFANIRPSGEVYLSDTWADTD--KH 57
Query: 82 FPPLS---SCANVQGCL 95
+P NV GC+
Sbjct: 58 YPGDKWDEPGNNVYGCI 74
>1edq_A Chitinase A; beta-alpha (TIM) barrel, hydrolase; 1.55A {Serratia
marcescens} SCOP: b.1.18.2 c.1.8.5 d.26.3.1 PDB: 1ffq_A*
1ffr_A* 1ehn_A* 1ctn_A 1k9t_A* 1eib_A* 2wlz_A* 2wly_A*
2wm0_A* 2wk2_A* 1nh6_A* 1x6l_A 1rd6_A 1x6n_A*
Length = 540
Score = 79.5 bits (196), Expect = 8e-19
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Query: 3 STLCSLLLSDIRVKRGSSEKRVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGLD 62
+ L LL + + +S K V Y+ W VY FT I THL+Y F +
Sbjct: 116 APLKEPLLEKNKPYKQNSGKVVGSYFVEWGVYGR---NFTVDKIPAQNLTHLLYGFIPIC 172
Query: 63 KENGLRPFDKYQD 75
NG+ K +
Sbjct: 173 GGNGINDSLKEIE 185
>1itx_A Chitinase A1, glycosyl hydrolase; alpha-beta (TIM) barrel; 1.10A
{Bacillus circulans} SCOP: c.1.8.5 d.26.3.1
Length = 419
Score = 79.4 bits (196), Expect = 9e-19
Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 3/70 (4%)
Query: 18 GSSEKRVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGLDKENGLRPFDKYQDIE 77
+ ++V YY +W+ Y + +I+P TH+ YAF + D
Sbjct: 8 AADSYKIVGYYPSWAAYGR---NYNVADIDPTKVTHINYAFADICWNGIHGNPDPSGPNP 64
Query: 78 QGKTFPPLSS 87
T S
Sbjct: 65 VTWTCQNEKS 74
>3fnd_A Chitinase; TIM-barrel, structural genomics, PSI-2, P structure
initiative, NEW YORK SGX research center for STRU
genomics, nysgxrc; 1.90A {Bacteroides thetaiotaomicron}
PDB: 3co4_A
Length = 312
Score = 75.8 bits (187), Expect = 8e-18
Identities = 11/59 (18%), Positives = 17/59 (28%), Gaps = 4/59 (6%)
Query: 20 SEKRVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGLDKENGLRPFDKYQDIEQ 78
S K V+ Y I TH+ +F + + L + IE
Sbjct: 2 SLKVVIGYLALDDWEFESL----FPTIEWKYLTHINASFARVKADGTLNINPVRKRIES 56
>1kfw_A Chitinase B; TIM barrel, hydrolase; 1.74A {Arthrobacter SP} SCOP:
c.1.8.5 d.26.3.1
Length = 435
Score = 76.0 bits (187), Expect = 1e-17
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 18 GSSEKRVVCYYTNWSVY-RPGTAKFTPQNINPYLCTHLIYAFGGLDKENG 66
+ R V Y+ W VY R AK + TH+ Y+FG ++ +
Sbjct: 5 TVNGYRNVGYFAQWGVYGRAFQAKQLDVSGTAKNLTHINYSFGNINNQTL 54
>3arx_A Chitinase A; TIM barrel, inhibitor complex, glycosidase, hydrolase,
hydro hydrolase inhibitor complex; HET: POY; 1.16A
{Vibrio harveyi} PDB: 3aro_A* 3arp_A* 3arr_A* 3arv_A*
3arw_A* 3arq_A* 3ary_A* 3arz_A* 3b8s_A 3b9e_A 3b9a_A*
3b9d_A 3as2_A* 3ars_A* 3art_A* 3as0_A* 3as1_A* 3aru_A*
3as3_A*
Length = 584
Score = 73.0 bits (179), Expect = 2e-16
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 19 SSEKRVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGLDKENG 66
+ Y+ W +Y +T N+ TH++Y F + N
Sbjct: 135 DPSIVMGTYFVEWGIYGR---DYTVDNMPVDNLTHILYGFIPICGPNE 179
>1goi_A Chitinase B; chitin degradation, hydrolase, glycosidase; 1.45A
{Serratia marcescens} SCOP: b.72.2.1 c.1.8.5 d.26.3.1
PDB: 1o6i_A* 1e6r_A* 1e15_A 1gpf_A* 1ur8_A* 1w1p_A*
1w1t_A* 1w1v_A* 1w1y_A* 1e6p_A 1e6n_A 1h0g_A* 1h0i_A*
1ogb_A 1ogg_A* 1e6z_A* 1ur9_A*
Length = 499
Score = 72.2 bits (177), Expect = 3e-16
Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 11/72 (15%)
Query: 19 SSEKRVVCYY-------TNWSVYRPGTAKFTPQNINPYLC---THLIYAFGGLDKENGLR 68
S+ K V+ YY N++ F NI P TH+ ++F ++ N
Sbjct: 2 STRKAVIGYYFIPTNQINNYTETDTSVVPFPVSNITPAKAKQLTHINFSFLDIN-SNLEC 60
Query: 69 PFDKYQDIEQGK 80
+D + + +
Sbjct: 61 AWDPATNDAKAR 72
>2y8v_A CHIC, class III chitinase, putative; afchic, hydrolase; 1.99A
{Aspergillus fumigatus}
Length = 290
Score = 70.3 bits (172), Expect = 8e-16
Identities = 14/52 (26%), Positives = 21/52 (40%)
Query: 15 VKRGSSEKRVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGLDKENG 66
V +RV+CY+ R P N TH+I A L+++ G
Sbjct: 6 VPGRPEHRRVICYHQTLCPNRGDYVSVLPLVKNNTGVTHIIIAAFHLNEDPG 57
>3aqu_A AT4G19810; stress response, TIM barrel, hydrolase, chitin; HET:
FLC; 2.01A {Arabidopsis thaliana}
Length = 356
Score = 65.0 bits (159), Expect = 8e-14
Identities = 10/54 (18%), Positives = 19/54 (35%)
Query: 32 SVYRPGTAKFTPQNINPYLCTHLIYAFGGLDKENGLRPFDKYQDIEQGKTFPPL 85
+ Y ++F +I+ L THL AF L+ + + +
Sbjct: 7 ASYWFPASEFPVTDIDSSLFTHLFCAFADLNSQTNQVTVSSANQPKFSTFTQTV 60
>3alf_A Chitinase, class V; hydrolase; 1.20A {Nicotiana tabacum} PDB:
3alg_A*
Length = 353
Score = 65.0 bits (159), Expect = 9e-14
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 33 VYRPGTAKFTPQNINPYLCTHLIYAFGGLDKENG-LRPFDKYQDIEQGKT 81
Y + NI+ L THL AF L+ + L + QD + T
Sbjct: 7 GYWFKDSGLALNNIDSTLFTHLFCAFADLNPQLNQLIISPENQDSFRQFT 56
>3oa5_A CHI1; TIM barrel, hydrolase; HET: 2PE; 1.74A {Yersinia} PDB: 4a5q_A
Length = 574
Score = 61.5 bits (149), Expect = 2e-12
Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 14/94 (14%)
Query: 19 SSEKRVVCYYTNWSVYRPGTAKFTPQ-------------NINPYLCTHLIYAFGGLDKEN 65
+ V+CY+T+WS Y P + + LIY+FGGL +
Sbjct: 97 DDDFNVLCYFTDWSQYDPRIINKEIRDTGGRSADILRLNTPDGRPFKRLIYSFGGLIGDK 156
Query: 66 G-LRPFDKYQDIEQGKTFPPLSSCANVQGCLTPT 98
+ + G P + AN +G P
Sbjct: 157 KYSADGNASIAVRLGVATDPDDAIANHKGKTIPV 190
Score = 50.3 bits (120), Expect = 1e-08
Identities = 5/53 (9%), Positives = 14/53 (26%)
Query: 19 SSEKRVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGLDKENGLRPFD 71
S R+ K P + + + + F + + ++
Sbjct: 165 SIAVRLGVATDPDDAIANHKGKTIPVDPDGAVLASINCGFTKWEAGDANERYN 217
>3sim_A Protein, family 18 chitinase; family 18 plant chitinase, TIM
barrel, chitin binding, glyco hydrolase, hydrolase;
2.10A {Crocus vernus}
Length = 275
Score = 58.3 bits (141), Expect = 1e-11
Identities = 7/41 (17%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 28 YTNWSVYRPGTA-KFTPQNINPYLCT-HLIYAFGGLDKENG 66
+ + Y + KF+ INP++ + +F +
Sbjct: 3 FVEYIGYPLFSGVKFSDVPINPHITKFQFVLSFAVDYTASS 43
>1edt_A Endo-beta-N-acetylglucosaminidase H, endo H; hydrolase
(glucosidase); 1.90A {Streptomyces plicatus} SCOP:
c.1.8.5 PDB: 1c90_A 1c8x_A 1c91_A 1c3f_A 1c92_A 1c8y_A
1c93_A
Length = 271
Score = 52.3 bits (125), Expect = 2e-09
Identities = 4/60 (6%), Positives = 13/60 (21%), Gaps = 1/60 (1%)
Query: 17 RGSSEKRVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGLD-KENGLRPFDKYQD 75
V Y + K+T + + ++ + + +
Sbjct: 4 PVKQGPTSVAYVEVNNNSMLNVGKYTLADGGGNAFDVAVIFAANINYDTGTKTAYLHFNE 63
>3n12_A Chitinase A, chinctu2; zinc atoms, complex, hydrolase; 1.20A
{Bacillus cereus} PDB: 3n11_A 3n15_A* 3n13_A* 3n17_A*
3n18_A* 3n1a_A*
Length = 333
Score = 47.6 bits (113), Expect = 1e-07
Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 4/58 (6%)
Query: 22 KRVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGLDKENGLRPFDKYQDIEQG 79
K +V Y+ N+ GT ++++P + +FG + F +
Sbjct: 7 KLLVGYWHNF---DNGTGIIKLKDVSPKW-DVINVSFGETGGDRSTVEFSPVYGTDAD 60
>3ian_A Chitinase; structural genomics, hydrolase, glycosidase, PSI-2,
protein structure initiative; 1.75A {Lactococcus lactis
subsp}
Length = 321
Score = 43.5 bits (102), Expect = 3e-06
Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 5/62 (8%)
Query: 19 SSEKRVVCYYTNWS-----VYRPGTAKFTPQNINPYLCTHLIYAFGGLDKENGLRPFDKY 73
S +K +V Y+ NW Y+ G++ + + +F + L F Y
Sbjct: 2 SLDKVLVGYWHNWKSTGKDGYKGGSSADFNLSSTQEGYNVINVSFMKTPEGQTLPTFKPY 61
Query: 74 QD 75
Sbjct: 62 NK 63
>3cz8_A Putative sporulation-specific glycosylase YDHD; structural
genomics, uncharacterized protein, protein struct
initiative, PSI-2; 2.20A {Bacillus subtilis subsp}
Length = 319
Score = 42.0 bits (99), Expect = 1e-05
Identities = 6/59 (10%), Positives = 17/59 (28%)
Query: 22 KRVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGLDKENGLRPFDKYQDIEQGK 80
+ + + + P + + PY + I+ + + + IE
Sbjct: 5 NYIAGTLSFYVLRNPDLDRELINDYAPYSSSISIFEYHIAPNGDIANQLNDAAAIETTW 63
>2ebn_A Endo-beta-N-acetylglucosaminidase F1; hydrolase(glucosidase);
2.00A {Elizabethkingia meningoseptica} SCOP: c.1.8.5
Length = 289
Score = 39.7 bits (92), Expect = 8e-05
Identities = 4/46 (8%), Positives = 13/46 (28%)
Query: 17 RGSSEKRVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGLD 62
+ ++ + FT +N L ++ ++
Sbjct: 5 TTKANIKLFSFTEVNDTNPLNNLNFTLKNSGKPLVDMVVLFSANIN 50
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.7 bits (89), Expect = 2e-04
Identities = 19/126 (15%), Positives = 46/126 (36%), Gaps = 15/126 (11%)
Query: 2 DSTLCSL--LLSDIRVK---RGSSEKRVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIY 56
+ S+ + +++VK + + +V +Y + P ++ Y +H+ +
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD--DLIPPYLDQYFYSHIGH 479
Query: 57 AFGGLDKENGLRPFDK-YQDIE--QGKTFPPLSSCANVQGCLTPTRWHQNLVFYSLERHY 113
++ + F + D + K ++ N G + T Q L FY + +
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW-NASGSILNTL--QQLKFY--KPYI 534
Query: 114 FRSHGK 119
+ K
Sbjct: 535 CDNDPK 540
>3bxw_B Chitinase domain-containing protein 1; TIM barrel, lysosome,
secreted, hydrolase; 2.70A {Homo sapiens}
Length = 393
Score = 32.7 bits (74), Expect = 0.017
Identities = 9/65 (13%), Positives = 20/65 (30%), Gaps = 6/65 (9%)
Query: 16 KRGSSEKRVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGLDKENGLRP-FDKYQ 74
+ V+ Y T W+ + + + T + + L +
Sbjct: 73 RDRHFAGDVLGYVTPWN-----SHGYDVTKVFGSKFTQISPVWLQLKRRGREMFEVTGLH 127
Query: 75 DIEQG 79
D++QG
Sbjct: 128 DVDQG 132
>3ebv_A Chinitase A; chitinase A, CHIA, glycosidase, structural genomics,
unknown function, hydrolase, PSI-2, protein structure
initiative; 1.50A {Streptomyces coelicolor}
Length = 302
Score = 30.2 bits (68), Expect = 0.11
Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 4/40 (10%)
Query: 19 SSEKRVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAF 58
S + V Y+ N++ A + P + AF
Sbjct: 2 SLKHAVTGYWQNFN----NGATVQKISDVPSAYDIIAVAF 37
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase,
reversible interconversion of pyruvate INTO D-lactate;
1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4
c.23.12.1 PDB: 1j49_A* 2dld_A*
Length = 333
Score = 27.2 bits (61), Expect = 1.4
Identities = 9/46 (19%), Positives = 13/46 (28%), Gaps = 8/46 (17%)
Query: 60 GLD---KENGLRPFDKYQDIEQGKTFPPLSSCANVQGCLTPTRWHQ 102
+D E G+ D L + NV +TP
Sbjct: 258 AMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNV--LVTP---KT 298
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding,
cytoskeleton; 1.78A {Homo sapiens}
Length = 315
Score = 27.0 bits (60), Expect = 1.5
Identities = 6/36 (16%), Positives = 8/36 (22%), Gaps = 3/36 (8%)
Query: 55 IYAFGGLDKENGLRPFDKYQDIEQGK--TFPPLSSC 88
I G+ + Y I K F
Sbjct: 199 IIVAAGVTDTGLTSSAEVY-SITDNKWAPFEAFPQE 233
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding,
invasion and metastasis, UBL conjugation pathway, UBL
protein folding; 2.00A {Rattus norvegicus}
Length = 318
Score = 26.9 bits (60), Expect = 1.8
Identities = 5/36 (13%), Positives = 12/36 (33%), Gaps = 3/36 (8%)
Query: 55 IYAFGGLDKENGLRPFDKYQDIEQGK--TFPPLSSC 88
I GG+ ++ + + D++ K
Sbjct: 209 IVIAGGVTEDGLSASVEAF-DLKTNKWEVMTEFPQE 243
>2xvl_A Alpha-xylosidase, putative, XYL31A; hydrolase, glycosyl hydrolase
family 31, (beta/alpha)8 barre; HET: PXN; 2.30A
{Cellvibrio japonicus} PDB: 2xvg_A* 2xvk_A*
Length = 1020
Score = 26.8 bits (59), Expect = 2.3
Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 4/21 (19%)
Query: 98 TRWHQNLVFYSLERHYFRSHG 118
TRW+Q F L +RSHG
Sbjct: 725 TRWYQFGAFVPL----YRSHG 741
>1nar_A Narbonin; plant SEED protein; 1.80A {Vicia narbonensis} SCOP:
c.1.8.5
Length = 290
Score = 26.2 bits (57), Expect = 3.1
Identities = 8/32 (25%), Positives = 9/32 (28%), Gaps = 1/32 (3%)
Query: 28 YTNWSVYRPGTAKFTPQNIN-PYLCTHLIYAF 58
Y F + IN L H I F
Sbjct: 8 YIGVKPNSTTLHDFPTEIINTETLEFHYILGF 39
>3tg7_A Hexon protein, late protein 2; adenovirus structural protein, with
NEW finding featuring PO binding to human coagulation
factor X; 1.57A {Human adenovirus 5} PDB: 2bvi_F 1p30_A
1vsz_A 3iyn_A 1p2z_A* 2obe_A
Length = 951
Score = 25.7 bits (56), Expect = 4.9
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 28 YTNWSVYRPGTAKFTPQNINP 48
Y+N ++Y P K++P N+
Sbjct: 473 YSNIALYLPDKLKYSPSNVKI 493
>2f2h_A Putative family 31 glucosidase YICI; BETA8alpha8 barrel, hydrolase;
HET: MPO XTG; 1.95A {Escherichia coli} SCOP: b.150.1.1
b.30.5.11 b.71.1.4 c.1.8.13 PDB: 1xsj_A 1xsi_A 1xsk_A*
1we5_A*
Length = 773
Score = 25.4 bits (56), Expect = 6.4
Identities = 6/21 (28%), Positives = 7/21 (33%), Gaps = 4/21 (19%)
Query: 98 TRWHQNLVFYSLERHYFRSHG 118
RW + S R HG
Sbjct: 525 KRWCAFGLLSSH----SRLHG 541
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold,
transferase; 2.00A {Helicobacter pylori}
Length = 315
Score = 25.3 bits (56), Expect = 7.1
Identities = 4/19 (21%), Positives = 7/19 (36%)
Query: 102 QNLVFYSLERHYFRSHGKH 120
+ L + R + H H
Sbjct: 296 EKLAQDVISRTFLEHHHHH 314
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural
genomics, structur genomics consortium, SGC, kelch
repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Length = 306
Score = 25.0 bits (55), Expect = 7.5
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 55 IYAFGGLDKENGLRPFDKYQDIEQGK--TFPPLSSC 88
I+A GG + GL + Y DI+ + P+
Sbjct: 203 IFAVGGQNGLGGLDNVEYY-DIKLNEWKMVSPMPWK 237
>3nsx_A Alpha-glucosidase; structural genomics, PSI-2, protein structure
initiative, MI center for structural genomics, MCSG,
acarbose; 1.57A {Ruminococcus obeum} PDB: 3ffj_A 3n04_A
3pha_A* 3nuk_A 3nxm_A* 3m46_A 3mkk_A* 3m6d_A* 3nqq_A*
3poc_A*
Length = 666
Score = 25.1 bits (55), Expect = 7.6
Identities = 6/21 (28%), Positives = 7/21 (33%), Gaps = 4/21 (19%)
Query: 98 TRWHQNLVFYSLERHYFRSHG 118
R+ VF L R H
Sbjct: 466 LRFLALGVFTPL----MRDHA 482
>2g3m_A Maltase, alpha-glucosidase; hydrolase, glycoside hydrolase family
31, multidomain protein, (beta/alpha)8 barrel, retaining
mechanism; 2.55A {Sulfolobus solfataricus} PDB: 2g3n_A*
Length = 693
Score = 25.1 bits (55), Expect = 7.7
Identities = 4/21 (19%), Positives = 10/21 (47%), Gaps = 4/21 (19%)
Query: 98 TRWHQNLVFYSLERHYFRSHG 118
+++ +F+ +RSH
Sbjct: 465 VKYYALALFFPF----YRSHK 481
>3qxl_A RAS-specific guanine nucleotide-releasing factor; CDC25 domain
homology, guanine-nucleotide exchange factor, S GTPase
RAL subfamily; 2.24A {Homo sapiens}
Length = 271
Score = 25.1 bits (55), Expect = 8.2
Identities = 17/102 (16%), Positives = 33/102 (32%), Gaps = 14/102 (13%)
Query: 30 NWSVYRPGTAKFTPQNINPYL---CTHLIYAFGGL-DKENGLRPFDKY----------QD 75
N+ R PYL LIY + + + D
Sbjct: 165 NYKRTREYIRSLKMVPSIPYLGIYLLDLIYIDSAYPASGSIMENEQRSNQMNNILRIIAD 224
Query: 76 IEQGKTFPPLSSCANVQGCLTPTRWHQNLVFYSLERHYFRSH 117
++ ++ L++ +VQ L R+ + L + + +Y S
Sbjct: 225 LQVSCSYDHLTTLPHVQKYLKSVRYIEELQKFVEDDNYKLSL 266
>1k0w_A L-ribulose 5 phosphate 4-epimerase; aldolase, isomerase; 2.10A
{Escherichia coli} SCOP: c.74.1.1 PDB: 1jdi_A
Length = 231
Score = 24.6 bits (54), Expect = 8.5
Identities = 6/12 (50%), Positives = 7/12 (58%)
Query: 109 LERHYFRSHGKH 120
L +HY R HG
Sbjct: 215 LNKHYLRKHGAK 226
>2iny_A Hexon protein, late protein 2; avian adenovirus, CELO, major coat
protein, crystal P nanotechnology, viral jelly roll,
viral protein; 3.90A {Fowl adenovirus 1}
Length = 942
Score = 24.9 bits (54), Expect = 9.0
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 28 YTNWSVYRPGTAKFTPQNINPY 49
+N + Y P KF+ + +P
Sbjct: 441 MSNIADYLPDKYKFSIRGFDPV 462
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon
SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Length = 383
Score = 24.7 bits (53), Expect = 9.8
Identities = 8/44 (18%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 70 FDKYQDIEQGKTFPPLSSCANVQGCLTPTRWHQNLVFYSLERHY 113
D++ + K P+ N + +R HQ + ++H
Sbjct: 306 LDRFFTFPREK---PVRVDRNTAEIIRHSRLHQWFSVSAEQQHM 346
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.138 0.452
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,907,515
Number of extensions: 97169
Number of successful extensions: 222
Number of sequences better than 10.0: 1
Number of HSP's gapped: 203
Number of HSP's successfully gapped: 57
Length of query: 122
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 40
Effective length of database: 4,412,271
Effective search space: 176490840
Effective search space used: 176490840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.9 bits)