RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5903
(122 letters)
>d1jnda1 c.1.8.5 (A:2-278,A:371-420) Imaginal disc growth factor-2
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 327
Score = 81.7 bits (201), Expect = 3e-20
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 23 RVVCYYTNWSVYRPGTAKFTPQNINPYL--CTHLIYAFGGLDKENG-LRPFDKYQDIEQG 79
+VCYY + S R G K ++ L C+HL+Y + GL EN ++ DI +
Sbjct: 2 NLVCYYDSSSYTREGLGKLLNPDLEIALQFCSHLVYGYAGLRGENLQAYSMNENLDIYKH 61
>d1w9pa1 c.1.8.5 (A:39-298,A:361-433) Chitinase 1 {Aspergillus
fumigatus [TaxId: 5085]}
Length = 333
Score = 78.7 bits (193), Expect = 3e-19
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 19 SSEKRVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGLDKENG-LRPFDKYQDIE 77
SS R V Y+ NW++Y PQ++ TH++YAF + E G + D + DIE
Sbjct: 2 SSGYRSVVYFVNWAIYGR---NHNPQDLPVERLTHVLYAFANVRPETGEVYMTDSWADIE 58
>d2pi6a1 c.1.8.5 (A:1-239,A:308-361) Signal processing protein
(SPC-40, MGP-40) {Sheep (Ovis aries) [TaxId: 9940]}
Length = 292
Score = 76.4 bits (187), Expect = 2e-18
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 23 RVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGLDKENGLRPFDKYQDIEQGKTF 82
+++CYYT+WS YR G P I+P+LCTH+IY F + N + ++ + D+ T
Sbjct: 2 KLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYTFANIS-NNEIDTWE-WNDVTLYDTL 59
Query: 83 PPLSSC-ANVQGCLTPTRWHQNLVFYS 108
L + ++ L+ W+ +S
Sbjct: 60 NTLKNRNPKLKTLLSVGGWNFGPERFS 86
>d1wb0a1 c.1.8.5 (A:22-266,A:337-388) Chitotriosidase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 297
Score = 74.8 bits (183), Expect = 6e-18
Identities = 23/42 (54%), Positives = 33/42 (78%)
Query: 23 RVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGLDKE 64
++VCY+TNW+ YR G A+F P++++P LCTHLIYAF G+
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMTNH 43
>d1ll7a1 c.1.8.5 (A:36-292,A:355-427) Chitinase 1 {Fungus
(Coccidioides immitis) [TaxId: 5501]}
Length = 330
Score = 74.9 bits (183), Expect = 9e-18
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 22 KRVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGLDKENGLRPFDKYQDIE 77
R V Y+ NW++Y G PQ++ TH++YAF + + D + D +
Sbjct: 3 FRSVVYFVNWAIYGRG---HNPQDLKADQFTHILYAFANIRPSGEVYLSDTWADTD 55
>d1vf8a1 c.1.8.5 (A:1-245,A:316-372) Chitinase-like lectin ym1,
saccharide binding domain {Mouse (Mus musculus) [TaxId:
10090]}
Length = 302
Score = 74.4 bits (182), Expect = 1e-17
Identities = 22/53 (41%), Positives = 31/53 (58%)
Query: 23 RVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGLDKENGLRPFDKYQD 75
+++CYYT+W+ RP F P NI+P LCTHLIYAF G+ ++
Sbjct: 2 QLMCYYTSWAKDRPIEGSFKPGNIDPCLCTHLIYAFAGMQNNEITYTHEQDLR 54
>d1itxa1 c.1.8.5 (A:33-337,A:410-451) Chitinase A1 {Bacillus
circulans [TaxId: 1397]}
Length = 347
Score = 71.4 bits (174), Expect = 2e-16
Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 3/69 (4%)
Query: 19 SSEKRVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGLDKENGLRPFDKYQDIEQ 78
+ ++V YY +W+ Y + +I+P TH+ YAF + D
Sbjct: 9 ADSYKIVGYYPSWAAYGR---NYNVADIDPTKVTHINYAFADICWNGIHGNPDPSGPNPV 65
Query: 79 GKTFPPLSS 87
T S
Sbjct: 66 TWTCQNEKS 74
>d1edqa2 c.1.8.5 (A:133-443,A:517-563) Chitinase A, catalytic
domain {Serratia marcescens [TaxId: 615]}
Length = 358
Score = 70.2 bits (171), Expect = 5e-16
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Query: 19 SSEKRVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGLDKENGLRPFDKYQDIEQ 78
+S K V Y+ W VY FT I THL+Y F + NG+ D ++IE
Sbjct: 23 NSGKVVGSYFVEWGVYGR---NFTVDKIPAQNLTHLLYGFIPICGGNGI--NDSLKEIEG 77
Query: 79 GKTFPPLSS 87
S
Sbjct: 78 SFQALQRSC 86
>d1kfwa1 c.1.8.5 (A:10-327,A:389-444) Psychrophilic chitinase B
{Arthrobacter sp., tad20 [TaxId: 1667]}
Length = 374
Score = 68.0 bits (165), Expect = 3e-15
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 19 SSEKRVVCYYTNWSVY-RPGTAKFTPQNINPYLCTHLIYAFGGLDKENG 66
+ R V Y+ W VY R AK + TH+ Y+FG ++ +
Sbjct: 6 VNGYRNVGYFAQWGVYGRAFQAKQLDVSGTAKNLTHINYSFGNINNQTL 54
>d1goia2 c.1.8.5 (A:3-291,A:380-446) Chitinase B, catalytic domain
{Serratia marcescens [TaxId: 615]}
Length = 356
Score = 63.2 bits (153), Expect = 1e-13
Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 11/73 (15%)
Query: 20 SEKRVVCYY-------TNWSVYRPGTAKFTPQNINPYLC---THLIYAFGGLDKENGLRP 69
+ K V+ YY N++ F NI P TH+ ++F ++ N
Sbjct: 1 TRKAVIGYYFIPTNQINNYTETDTSVVPFPVSNITPAKAKQLTHINFSFLDIN-SNLECA 59
Query: 70 FDKYQDIEQGKTF 82
+D + + +
Sbjct: 60 WDPATNDAKARDV 72
>d1edta_ c.1.8.5 (A:) Endo-beta-N-acetylglucosaminidase
{Streptomyces plicatus, endoglycosidase H [TaxId:
1922]}
Length = 265
Score = 51.6 bits (123), Expect = 1e-09
Identities = 5/54 (9%), Positives = 15/54 (27%), Gaps = 1/54 (1%)
Query: 23 RVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGLDKENG-LRPFDKYQD 75
V Y + K+T + + ++ + G + + +
Sbjct: 5 TSVAYVEVNNNSMLNVGKYTLADGGGNAFDVAVIFAANINYDTGTKTAYLHFNE 58
>d2ebna_ c.1.8.5 (A:) Endo-beta-N-acetylglucosaminidase
{Flavobacterium meningosepticum, endoglycosidase F1
[TaxId: 238]}
Length = 285
Score = 47.8 bits (113), Expect = 4e-08
Identities = 6/61 (9%), Positives = 16/61 (26%), Gaps = 1/61 (1%)
Query: 19 SSEKRVVCYYTNWSVYRPGTAKFTPQNINPYLCTHLIYAFGGLD-KENGLRPFDKYQDIE 77
+ ++ + FT +N L ++ ++ + F
Sbjct: 3 KANIKLFSFTEVNDTNPLNNLNFTLKNSGKPLVDMVVLFSANINYDAANDKVFVSNNPNV 62
Query: 78 Q 78
Q
Sbjct: 63 Q 63
>d1nara_ c.1.8.5 (A:) Seed storage protein {Vicia narbonensis,
Narbonin [TaxId: 3912]}
Length = 289
Score = 31.3 bits (70), Expect = 0.019
Identities = 12/62 (19%), Positives = 18/62 (29%), Gaps = 4/62 (6%)
Query: 22 KRVVCYYTNWSVYRPGTAKFTPQNIN-PYLCTHLIYAFGGLDKENGLRP---FDKYQDIE 77
K + Y F + IN L H I F + F++ D+E
Sbjct: 2 KPIFREYIGVKPNSTTLHDFPTEIINTETLEFHYILGFAIESYYESGKGTGTFEESWDVE 61
Query: 78 QG 79
Sbjct: 62 LF 63
>d2hvma_ c.1.8.5 (A:) Hevamine A (chitinase/lysozyme) {Para rubber
tree (Hevea brasiliensis) [TaxId: 3981]}
Length = 273
Score = 28.9 bits (64), Expect = 0.13
Identities = 5/44 (11%), Positives = 13/44 (29%), Gaps = 2/44 (4%)
Query: 30 NWSVY--RPGTAKFTPQNINPYLCTHLIYAFGGLDKENGLRPFD 71
++Y + G Q + +++ AF +
Sbjct: 2 GIAIYWGQNGNEGTLTQTCSTRKYSYVNIAFLNKFGNGQTPQIN 45
>d1p2za1 b.121.2.2 (A:5-650) Adenovirus hexon {Human adenovirus type
2 [TaxId: 10515]}
Length = 646
Score = 25.9 bits (57), Expect = 1.4
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 28 YTNWSVYRPGTAKFTPQNINP 48
Y+N ++Y P K+ P N+
Sbjct: 485 YSNIALYLPDKLKYNPTNVEI 505
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.138 0.452
Gapped
Lambda K H
0.267 0.0493 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 489,562
Number of extensions: 20953
Number of successful extensions: 56
Number of sequences better than 10.0: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 16
Length of query: 122
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 47
Effective length of database: 1,377,846
Effective search space: 64758762
Effective search space used: 64758762
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.4 bits)