Query psy5905
Match_columns 371
No_of_seqs 137 out of 1492
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 21:18:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5905.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5905hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zy9_A Mg2+ transporter MGTE; 19.2 2.5E+02 0.0084 27.5 7.5 24 45-68 415-438 (473)
2 1vry_A Glycine receptor alpha- 8.4 2.9E+02 0.0098 20.2 3.2 24 127-150 39-62 (76)
3 3j1r_A Archaeal adhesion filam 7.2 4E+02 0.014 15.3 3.4 18 298-315 7-24 (26)
4 2l9u_A Receptor tyrosine-prote 6.4 3.7E+02 0.013 16.7 2.4 13 302-314 18-30 (40)
5 3njr_A Precorrin-6Y methylase; 5.2 1.4E+02 0.0049 25.1 0.0 16 12-27 2-17 (204)
6 3arc_M Photosystem II reaction 5.1 4.2E+02 0.014 16.6 2.1 16 91-106 8-23 (36)
7 3ld2_A SMU.2055, putative acet 5.0 1.5E+02 0.0051 23.9 0.0 20 12-31 2-21 (197)
8 1zxj_A MPN555, hypothetical pr 4.8 2.1E+02 0.0072 25.3 0.8 16 12-27 2-17 (218)
9 3vmt_A Monofunctional glycosyl 4.0 3.2E+02 0.011 24.9 1.3 15 12-26 2-16 (263)
10 1n0e_A Protein MRAZ; cell divi 3.8 2.1E+02 0.0071 24.2 0.0 14 12-25 2-15 (166)
No 1
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=19.22 E-value=2.5e+02 Score=27.50 Aligned_cols=24 Identities=17% Similarity=0.393 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhhh
Q psy5905 45 LSAITVLGLGSLLLGLCPIIIRHR 68 (371)
Q Consensus 45 i~~~~~i~~~s~lgg~lP~~~~~~ 68 (371)
+..++.+++++++|+++|++++|+
T Consensus 415 ~a~~~~~~~a~~~g~~~p~~~~~~ 438 (473)
T 2zy9_A 415 VSLVLIVFFANLVGAMLPFLLRRL 438 (473)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333445566777777777776654
No 2
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=8.41 E-value=2.9e+02 Score=20.23 Aligned_cols=24 Identities=13% Similarity=0.229 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCC
Q psy5905 127 CIMCAGFFMMFTIESIVHSLMDHS 150 (371)
Q Consensus 127 ~~~~~Gf~l~~lle~i~~~~~~~~ 150 (371)
++++..|.+.-++|..+-.+..++
T Consensus 39 ~~~C~~FVF~aLlEya~V~y~~r~ 62 (76)
T 1vry_A 39 LAVCLLFVFSALLEYAAVNFVSRK 62 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 567788888889999887766543
No 3
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=7.23 E-value=4e+02 Score=15.32 Aligned_cols=18 Identities=33% Similarity=0.501 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy5905 298 LLSVILQGIATGTLMYIV 315 (371)
Q Consensus 298 ~~~gil~alaaGtflYIa 315 (371)
.+.-++.+++++.++|+=
T Consensus 7 ~~lLIviav~aaVllylW 24 (26)
T 3j1r_A 7 TLLLILIAVAAAVLLYTW 24 (26)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345577889999999863
No 4
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=6.40 E-value=3.7e+02 Score=16.70 Aligned_cols=13 Identities=23% Similarity=0.511 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHH
Q psy5905 302 ILQGIATGTLMYI 314 (371)
Q Consensus 302 il~alaaGtflYI 314 (371)
++.-+-+|+|+|-
T Consensus 18 vif~~lg~tflyw 30 (40)
T 2l9u_A 18 VIFMMLGGTFLYW 30 (40)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHhCceeEEE
Confidence 3444567888884
No 5
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=5.17 E-value=1.4e+02 Score=25.14 Aligned_cols=16 Identities=25% Similarity=0.374 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCccc
Q psy5905 12 ASSRDHYNTDYNVQPE 27 (371)
Q Consensus 12 ~~~~~~~~~~~~~~~~ 27 (371)
+|||.|||+.+|.+|.
T Consensus 2 ~~~~~~~~~~~~~~~~ 17 (204)
T 3njr_A 2 GSSHHHHHHSSGLVPR 17 (204)
T ss_dssp ----------------
T ss_pred CccccccccccCcccC
Confidence 6899999999998873
No 6
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=5.14 E-value=4.2e+02 Score=16.56 Aligned_cols=16 Identities=38% Similarity=0.486 Sum_probs=11.0
Q ss_pred HHHHHHHHhhHHHHHH
Q psy5905 91 LLATTFLHLLPEVKEQ 106 (371)
Q Consensus 91 lL~~aflhLLPea~e~ 106 (371)
+++++++-++|-++-.
T Consensus 8 fiAt~Lfi~iPt~FLl 23 (36)
T 3arc_M 8 LIATALFVLVPSVFLI 23 (36)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5677777777777654
No 7
>3ld2_A SMU.2055, putative acetyltransferase; HET: COA; 2.50A {Streptococcus mutans}
Probab=5.04 E-value=1.5e+02 Score=23.91 Aligned_cols=20 Identities=20% Similarity=0.175 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCccccccc
Q psy5905 12 ASSRDHYNTDYNVQPELQLS 31 (371)
Q Consensus 12 ~~~~~~~~~~~~~~~~c~~~ 31 (371)
||||.||+++.-..+.|.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~hm 21 (197)
T 3ld2_A 2 GSSHHHHHHSSGLVPRGSHM 21 (197)
T ss_dssp --------------------
T ss_pred CcccccccccCCcccCccce
Confidence 68999999999999999877
No 8
>1zxj_A MPN555, hypothetical protein Mg377 homolog; mostly alpha helical protein, TRI-lobal structure, structural genomics, PSI; 2.80A {Mycoplasma pneumoniae}
Probab=4.75 E-value=2.1e+02 Score=25.27 Aligned_cols=16 Identities=31% Similarity=0.588 Sum_probs=3.2
Q ss_pred CCCCCCCCCCCCCccc
Q psy5905 12 ASSRDHYNTDYNVQPE 27 (371)
Q Consensus 12 ~~~~~~~~~~~~~~~~ 27 (371)
||||.||++|+.-..+
T Consensus 2 ~~~~~~~~~~~~~~~~ 17 (218)
T 1zxj_A 2 GSSHHHHHHDYDIPTT 17 (218)
T ss_dssp ---------CCCC---
T ss_pred CCccccccccCCCCcc
Confidence 7899999999985443
No 9
>3vmt_A Monofunctional glycosyltransferase; transmembrane, bacterial cell WALL SYNT membrane; HET: LHI; 2.30A {Staphylococcus aureus} PDB: 3vmr_A* 3vms_A 3vmq_A*
Probab=3.95 E-value=3.2e+02 Score=24.90 Aligned_cols=15 Identities=27% Similarity=0.390 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCcc
Q psy5905 12 ASSRDHYNTDYNVQP 26 (371)
Q Consensus 12 ~~~~~~~~~~~~~~~ 26 (371)
||||.||++.....|
T Consensus 2 ~~~~~~~~~~~~~~~ 16 (263)
T 3vmt_A 2 GSSHHHHHHSSGLVP 16 (263)
T ss_dssp ---------------
T ss_pred CCcccccccccCccc
Confidence 566666665544343
No 10
>1n0e_A Protein MRAZ; cell division and cell WALL biosynthesis protein, structural genomics, BSGC structure funded by NIH; 2.70A {Mycoplasma pneumoniae} SCOP: b.129.1.2 PDB: 1n0f_A 1n0g_A
Probab=3.84 E-value=2.1e+02 Score=24.20 Aligned_cols=14 Identities=36% Similarity=0.672 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCc
Q psy5905 12 ASSRDHYNTDYNVQ 25 (371)
Q Consensus 12 ~~~~~~~~~~~~~~ 25 (371)
||||.||++|+.-.
T Consensus 2 ~~~~~~~~~~~~~~ 15 (166)
T 1n0e_A 2 GSSHHHHHHDYDIP 15 (166)
T ss_dssp --------------
T ss_pred CcccccccccCCCC
Confidence 68999999998843
Done!