Query psy5905
Match_columns 371
No_of_seqs 137 out of 1492
Neff 7.1
Searched_HMMs 13730
Date Fri Aug 16 21:18:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5905.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5905hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2yvxa3 f.57.1.1 (A:276-448) M 23.2 1.3E+02 0.0098 23.4 7.8 27 42-68 114-140 (173)
2 d2bs2c1 f.21.2.1 (C:1-254) Fum 16.4 2.7E+02 0.02 22.8 9.2 68 76-144 22-97 (254)
3 d2inwa1 d.110.8.1 (A:4-120) Hy 9.0 43 0.0031 24.7 0.7 36 320-357 6-41 (117)
4 d1v54l_ f.23.6.1 (L:) Mitochon 7.7 2.2E+02 0.016 17.1 3.5 24 43-68 18-41 (46)
5 d2axtm1 f.23.35.1 (M:1-36) Pho 7.2 1.3E+02 0.0095 17.2 2.1 16 91-106 8-23 (36)
6 d1b8ta3 g.39.1.3 (A:101-143) C 3.9 2.7E+02 0.019 16.4 2.2 28 10-37 2-30 (43)
7 d2axtl1 f.23.31.1 (L:1-37) Pho 3.9 3.9E+02 0.028 15.0 3.8 17 39-55 17-33 (37)
8 d3cx5d2 f.23.11.1 (D:261-307) 3.8 2.7E+02 0.02 16.9 2.1 18 36-53 4-21 (47)
9 d1ppjd2 f.23.11.1 (D:196-241) 3.7 3.1E+02 0.023 16.4 2.4 18 36-53 4-21 (46)
10 d1kqfb2 f.23.22.1 (B:246-290) 3.5 4.7E+02 0.034 15.6 3.1 18 299-316 17-34 (45)
No 1
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=23.20 E-value=1.3e+02 Score=23.41 Aligned_cols=27 Identities=19% Similarity=0.379 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhhh
Q psy5905 42 VAKLSAITVLGLGSLLLGLCPIIIRHR 68 (371)
Q Consensus 42 ~~ki~~~~~i~~~s~lgg~lP~~~~~~ 68 (371)
.+-+..++.+.+++++|.++|+.++|.
T Consensus 114 vi~~sl~~~~~ia~~~G~~lPlll~kl 140 (173)
T d2yvxa3 114 VVGVSLVLIVFFANLVGAMLPFLLRRL 140 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555666777888888888888764
No 2
>d2bs2c1 f.21.2.1 (C:1-254) Fumarate reductase respiratory complex cytochrome b subunit, FrdC {Wolinella succinogenes [TaxId: 844]}
Probab=16.36 E-value=2.7e+02 Score=22.77 Aligned_cols=68 Identities=13% Similarity=0.039 Sum_probs=43.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhh--------HHHHHHhHhhhhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q psy5905 76 FQNVTSVLMYFGGGVLLATTFLHLL--------PEVKEQIEDLQKEKGLFSEKEFPFAECIMCAGFFMMFTIESIVH 144 (371)
Q Consensus 76 ~~~~l~~~~~fa~GVlL~~aflhLL--------Pea~e~~~~~~~~~g~~~~~~~P~a~~~~~~Gf~l~~lle~i~~ 144 (371)
.+-.+..+.+++|=++..-.++||+ ||+++...+..+..+. +....|+...+..+++++.+++--+..
T Consensus 22 ~~~~l~~l~slTGlvL~lFl~~Hm~~n~~il~g~eafn~~a~~l~~~~~-~~~~~p~l~~i~~~~l~~~ll~H~~~a 97 (254)
T d2bs2c1 22 MPAKLDWWQSATGLFLGLFMIGHMFFVSTILLGDNVMLWVTKKFELDFI-FEGGKPIVVSFLAAFVFAVFIAHAFLA 97 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCHHHHHHHHHHTTCTTT-SSSCCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhccc-ccCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 4556888888887777777888875 7777776654332111 123456666666666666666665554
No 3
>d2inwa1 d.110.8.1 (A:4-120) Hypothetical protein YeeU {Shigella flexneri [TaxId: 623]}
Probab=8.96 E-value=43 Score=24.72 Aligned_cols=36 Identities=33% Similarity=0.440 Sum_probs=28.1
Q ss_pred hhcccccCCCcccccCCCCCcccccccCCCCccccCcc
Q psy5905 320 LKPHGTHCWKDWGFNTPWTPRNNIRAPSMPEGNILPNL 357 (371)
Q Consensus 320 lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (371)
.|..-+++.+.||....+++|.+-|. ..+||-+=.|
T Consensus 6 ~~~~~~~~~p~WGL~~~itP~fGARL--VQeG~rLh~L 41 (117)
T d2inwa1 6 TPPDDNHDRPWWGLPCTVTPCFGARL--VQEGNRLHYL 41 (117)
T ss_dssp SCCCCCTTSCCCSCCCCSSSEEEEEE--EEETTEEECC
T ss_pred cCCCCCCCCcCCCCccccccccccee--eecCceEEEe
Confidence 34445667889999999999999988 7788765444
No 4
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.66 E-value=2.2e+02 Score=17.14 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhh
Q psy5905 43 AKLSAITVLGLGSLLLGLCPIIIRHR 68 (371)
Q Consensus 43 ~ki~~~~~i~~~s~lgg~lP~~~~~~ 68 (371)
.++.++++++++|-+ ..|+++.|.
T Consensus 18 ~rLla~m~~~fGsgf--a~PF~ivRh 41 (46)
T d1v54l_ 18 WRLLAMMTLFFGSGF--AAPFFIVRH 41 (46)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHhccc--cchHHHHHH
Confidence 466777778887744 478887764
No 5
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=7.23 E-value=1.3e+02 Score=17.23 Aligned_cols=16 Identities=38% Similarity=0.486 Sum_probs=10.6
Q ss_pred HHHHHHHHhhHHHHHH
Q psy5905 91 LLATTFLHLLPEVKEQ 106 (371)
Q Consensus 91 lL~~aflhLLPea~e~ 106 (371)
+++++++-|+|.++-.
T Consensus 8 ~iAt~LFilvPt~FLl 23 (36)
T d2axtm1 8 LIATALFVLVPSVFLI 23 (36)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4567777777776554
No 6
>d1b8ta3 g.39.1.3 (A:101-143) Cysteine-rich (intestinal) protein, CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=3.91 E-value=2.7e+02 Score=16.44 Aligned_cols=28 Identities=21% Similarity=0.166 Sum_probs=17.5
Q ss_pred CCCCCCCCCCCCCCCc-cccccccccccc
Q psy5905 10 NSASSRDHYNTDYNVQ-PELQLSFYFAHT 37 (371)
Q Consensus 10 ~~~~~~~~~~~~~~~~-~~c~~~~~~~~~ 37 (371)
|+++++........+. +.|+.++|..|+
T Consensus 2 ~~~~sk~~~~~g~~~kC~~C~k~VY~~E~ 30 (43)
T d1b8ta3 2 NPNASRMAQKVGGSDGCPRCGQAVYAAEK 30 (43)
T ss_dssp CCCCCCCCCCCCCCEECTTTSCEECSSSC
T ss_pred CCCccccccccCCCCcCccCCCEeeHHHH
Confidence 4455555544444433 489999999775
No 7
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.88 E-value=3.9e+02 Score=15.05 Aligned_cols=17 Identities=18% Similarity=-0.070 Sum_probs=7.9
Q ss_pred hhHHHHHHHHHHHHHHH
Q psy5905 39 NLAVAKLSAITVLGLGS 55 (371)
Q Consensus 39 ~~~~~ki~~~~~i~~~s 55 (371)
--|++-.+.+..+++.+
T Consensus 17 Ly~GlLlifvl~vLFss 33 (37)
T d2axtl1 17 LYLGLLLILVLALLFSS 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444444
No 8
>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.76 E-value=2.7e+02 Score=16.87 Aligned_cols=18 Identities=11% Similarity=-0.213 Sum_probs=11.4
Q ss_pred ccchhHHHHHHHHHHHHH
Q psy5905 36 HTSNLAVAKLSAITVLGL 53 (371)
Q Consensus 36 ~~~~~~~~ki~~~~~i~~ 53 (371)
|+-+.+++|.+.++.+++
T Consensus 4 DeRK~mg~K~~~i~s~l~ 21 (47)
T d3cx5d2 4 DERKRLGLKTVIILSSLY 21 (47)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 444778888777664443
No 9
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.69 E-value=3.1e+02 Score=16.39 Aligned_cols=18 Identities=17% Similarity=-0.031 Sum_probs=11.5
Q ss_pred ccchhHHHHHHHHHHHHH
Q psy5905 36 HTSNLAVAKLSAITVLGL 53 (371)
Q Consensus 36 ~~~~~~~~ki~~~~~i~~ 53 (371)
|+-+.+++|++.++.++.
T Consensus 4 d~RK~mG~Kv~~~l~~l~ 21 (46)
T d1ppjd2 4 DHRKRMGLKMLLMMGLLL 21 (46)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344778888777665544
No 10
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=3.47 E-value=4.7e+02 Score=15.57 Aligned_cols=18 Identities=17% Similarity=0.124 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy5905 299 LSVILQGIATGTLMYIVF 316 (371)
Q Consensus 299 ~~gil~alaaGtflYIa~ 316 (371)
+.+...++++|+|=||+.
T Consensus 17 ~~~~~~~~~~~~fHYv~v 34 (45)
T d1kqfb2 17 AAGFIATFAGLIFHYIGI 34 (45)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhee
Confidence 455667778888888875
Done!