RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5905
(371 letters)
>gnl|CDD|217089 pfam02535, Zip, ZIP Zinc transporter. The ZIP family consists of
zinc transport proteins and many putative metal
transporters. The main contribution to this family is
from the Arabidopsis thaliana ZIP protein family these
proteins are responsible for zinc uptake in the plant.
Also found within this family are C. elegans proteins of
unknown function which are annotated as being similar to
human growth arrest inducible gene product, although
this protein in not found within this family.
Length = 314
Score = 156 bits (397), Expect = 6e-45
Identities = 78/293 (26%), Positives = 126/293 (43%), Gaps = 29/293 (9%)
Query: 43 AKLSAITVLGLGSLLLGLCPIIIRHRKRGSSFVFQNVTSVLMYFGGGVLLATTFLHLLPE 102
K+ AI + + SL+ L P++I + S + S L+ F GVLL T FLHLLPE
Sbjct: 3 LKIYAIFAILITSLIGLLLPLLIPLISKSRS---SKLLSFLLAFAAGVLLGTAFLHLLPE 59
Query: 103 VKEQIEDLQKEKGLFSEKEFPFAECIMCAGFFMMFTIESIVHSLMDH------------- 149
E +E PFA I+ GFF++ +E ++
Sbjct: 60 ALEALESSPCL--GDHGPWHPFAGLIVLLGFFLVLLVEKLLTYYKGRGHSHGHDHGHDGE 117
Query: 150 SGHEVKNINIKTKNYKTCNDSVQVIESDHIHHDHSHDHSHLLRSASLRN--FLIVMALSV 207
H V + + H H H S +R+ +L+ + + +
Sbjct: 118 HSHTVPDEESGAVESNVVHHEHGEGPHHHHHEGHEKGESDKESGLRVRDIAWLLELGIIL 177
Query: 208 HEVFEGLALGLEQVTTQVWYLLLAVSCHKFVIALCLGLQITNNVASASSKLFILNITYVV 267
H FEGLA+G+ ++ L +A+ H+ L LG + A S K +L +
Sbjct: 178 HSFFEGLAIGVSFSSSTGISLFIAILFHELPEGLGLGAILLQ--AGFSRKKAVL---LAL 232
Query: 268 VFALCSPLGIALGMVITVMTNVTASSTLLTLLSVILQGIATGTLMYIVFFEIL 320
+FAL +PLGIA+G++I+ +N S + + IL + GT +Y+ E+L
Sbjct: 233 LFALTTPLGIAIGILISSSSNSPGSD----ITTGILLAFSAGTFLYVALVELL 281
>gnl|CDD|233141 TIGR00820, zip, ZIP zinc/iron transport family. The Zinc
(Zn2+)-Iron (Fe2+) Permease (ZIP) Family (TC
2.A.5)Members of the ZIP family consist of proteins with
eight putative transmembrane spanners. They are derived
from animals, plants and yeast. Theycomprise a diverse
family, with several paralogues in any one organism
(e.g., at least five in Caenorabditis elegans, at least
five in Arabidopsis thaliana and two inSaccharomyces
cervisiae. The two S. cerevisiae proteins, Zrt1 and
Zrt2, both probably transport Zn2+ with high
specificity, but Zrt1 transports Zn2+ with ten-fold
higher affinitythan Zrt2. Some members of the ZIP family
have been shown to transport Zn2+ while others transport
Fe2+, and at least one transports a range of metal ions.
The energy source fortransport has not been
characterized, but these systems probably function as
secondary carriers [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 324
Score = 84.0 bits (208), Expect = 3e-18
Identities = 70/282 (24%), Positives = 114/282 (40%), Gaps = 16/282 (5%)
Query: 43 AKLSAITVLGLGSLLLGLCPIIIRHRKRGSSFVFQNVTSVLMYFGGGVLLATTFLHLLPE 102
K+ AI + L S++ + P+I ++ N V F GV+LAT F+H+LPE
Sbjct: 18 LKIVAIFSILLASVIGVMFPLIGKNVPSLR--PEGNFFFVAKAFAAGVILATGFMHVLPE 75
Query: 103 VKEQIEDLQKEKGLFSEKEFPFAECIMCAGFFMMFTIESIVHSLMDHSGHEVKNINIKTK 162
E + E +FPFA I + ++ S H + K
Sbjct: 76 AFEMLSSPCLES--TPWGKFPFAGFIAMISAILTLLVDLFATSYY-ERKHGKGDHGSKEI 132
Query: 163 NYKTCNDSVQVIESDHIHHDHSHDHSHLLRSASLRNFLIVMALS----VHEVFEGLALGL 218
+ + H H++ LR ++ L VH V GL+LG
Sbjct: 133 KVGDGEEGTAGGTKHGHEYYEDHVHTNSEVVQLLRQRVVAQVLELGIIVHSVVIGLSLGA 192
Query: 219 EQVTTQVWYLLLAVSCHKFVIALCLGLQITNNVASASSKLFILNITYVVVFALCSPLGIA 278
Q + L+ A+S H+F L LG I+ S + FA+ +PLGIA
Sbjct: 193 SQSPDTIKPLIAALSFHQFFEGLGLGGCISQAEFKCKSVTIM-----CTFFAVTTPLGIA 247
Query: 279 LGMVITVMTNVTASSTLLTLLSVILQGIATGTLMYIVFFEIL 320
+GM I+ ++ SS ++ +L + G L+Y+ ++L
Sbjct: 248 IGMGIS--SSYDDSSPTALIVEGVLNAASAGILIYMALVDLL 287
>gnl|CDD|177818 PLN02159, PLN02159, Fe(2+) transport protein.
Length = 337
Score = 56.1 bits (135), Expect = 7e-09
Identities = 64/253 (25%), Positives = 108/253 (42%), Gaps = 41/253 (16%)
Query: 78 NVTSVLMYFGGGVLLATTFLHLLPEVKEQIEDLQKEKGLFSEKEFPFAECIMCAGFFMMF 137
N+ +++ F G++L T F+H+LP+ E + E + +FPF AGF M
Sbjct: 79 NIFTIVKCFASGIILGTGFMHVLPDSFEMLSSKCLEDNPW--HKFPF------AGFVAML 130
Query: 138 TIESIVHSLMDHSGHEVKNINIKTKNYKTCNDSVQVIESDHIHHDHSHDHSHLLRSAS-- 195
SG I+ + T +SV + H HSH H +L++
Sbjct: 131 ------------SGLVTLAIDSMATSLYTSKNSVGPM----PDHGHSHGHGVVLKTKDDG 174
Query: 196 ----LRNFLIVMALS----VHEVFEGLALGLEQVTTQVWYLLLAVSCHKFVIALCLGLQI 247
LR +I M L VH V GL+LG T + L+ A+ H+ + LG I
Sbjct: 175 NAQLLRYRVIAMVLELGIIVHSVVIGLSLGATNDTCTIKGLIAALCFHQMFEGMGLGGCI 234
Query: 248 TNNVASASSKLFILNITYVVVFALCSPLGIALGMVITVMTNVTASSTLLTLLSVILQGIA 307
+ K + FA+ +P GI LG+ ++ + + + L+T+ +L +
Sbjct: 235 LQAEYTNVKKFLM-----AFFFAVTTPFGIFLGIALSSIYRDNSPTALITV--GLLNACS 287
Query: 308 TGTLMYIVFFEIL 320
G L+Y+ ++L
Sbjct: 288 AGLLIYMALVDLL 300
>gnl|CDD|223505 COG0428, COG0428, Predicted divalent heavy-metal cations
transporter [Inorganic ion transport and metabolism].
Length = 266
Score = 45.0 bits (107), Expect = 3e-05
Identities = 61/286 (21%), Positives = 96/286 (33%), Gaps = 58/286 (20%)
Query: 37 TSNLAVAKLSAITVLGLGSLLLGLCPIIIRHRKRGSSFVFQNVTSVLMYFGGGVLLATTF 96
SN + L + GL + L G +++ RK V V +L+ F GV+LA +F
Sbjct: 3 MSNSLLFALLLGLLAGLATAL-GALLVVLAVRK-----VSPRVLDILLGFAAGVMLAASF 56
Query: 97 LHLLPEVKEQIEDLQKEKGLFSEKEFPFAECIMCAGFFMMFTIESIVHSLMDHSGHEVKN 156
LLP E L F F G +F ++ +V +
Sbjct: 57 TSLLPPAIEASGVLGDSTHEFLPALAGFL-----LGVLFIFLLDRLVPHEHEGKSV---- 107
Query: 157 INIKTKNYKTCNDSVQVIESDHIHHDHSHDHSHLLRSASLRNFLIVMALSVHEVFEGLAL 216
L + R FL+ +A+S+H EGLA+
Sbjct: 108 ----------------------------EGLEGLRKPNLRRGFLLALAISLHNFPEGLAI 139
Query: 217 G--LEQVTTQVWYLLLAVSCHKFVIALCLGLQITNNVASASSKLFILNITYVVVFALCSP 274
G + L LA++ H GL + +A A + V+ L P
Sbjct: 140 GVAFLSNPSLGIALALAIAIHNIP----EGLAVALPLAGAGRSRLKA-LLVAVLSGLAEP 194
Query: 275 LGIALGMVITVMTNVTASSTLLTLLSVILQGIATGTLMYIVFFEIL 320
LG +G + L+ A G ++Y+V E+L
Sbjct: 195 LGAVIGAYL--------LGISSPLVLPFALAFAAGAMVYVVVDELL 232
>gnl|CDD|147480 pfam05313, Pox_P21, Poxvirus P21 membrane protein. The P21
membrane protein of vaccinia virus, encoded by the A17L
(or A18L) gene, has been reported to localise on the
inner of the two membranes of the intracellular mature
virus (IMV). It has also been shown that P21 acts as a
membrane anchor for the externally located fusion
protein P14 (A27L gene).
Length = 190
Score = 33.5 bits (77), Expect = 0.093
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 16/76 (21%)
Query: 228 LLLAVSCHKFVIALCLGLQITNNVASASSKLFILNITYVVVFALCSPLGIALGMVITVMT 287
+LL VIA CL +QI N + + LC + +V +T
Sbjct: 91 ILLPFPS--LVIAYCLSMQIINPGNG----------NTIGMSILC----VLASIVTIYVT 134
Query: 288 NVTASSTLLTLLSVIL 303
+V+AS T T+ +IL
Sbjct: 135 SVSASKTAYTISYIIL 150
>gnl|CDD|237322 PRK13261, ureE, urease accessory protein UreE; Provisional.
Length = 159
Score = 31.1 bits (71), Expect = 0.56
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 176 SDHIHHDHSHDHSH 189
HH HSHDHSH
Sbjct: 146 GAFRHHGHSHDHSH 159
>gnl|CDD|236963 PRK11720, PRK11720, galactose-1-phosphate uridylyltransferase;
Provisional.
Length = 346
Score = 31.0 bits (71), Expect = 0.86
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 4/25 (16%)
Query: 181 HDHSHDHSH----LLRSASLRNFLI 201
+DH H+H LLRSA++R F++
Sbjct: 290 NDHWQLHAHFYPPLLRSATVRKFMV 314
>gnl|CDD|226842 COG4413, Utp, Urea transporter [Amino acid transport and
metabolism].
Length = 319
Score = 30.9 bits (70), Expect = 1.1
Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 22/123 (17%)
Query: 198 NFLIVMALSVHEVF------EGLALGLEQVTTQVWYLLLAV--SCHKFVIALCLGLQITN 249
L + L + +VF G+ + + + W + A+ + +A LG
Sbjct: 169 AELAALFLGISQVFLLGSPIAGVLVVIGLLIVSRWAAVFALAGAALSLPLAWLLG----A 224
Query: 250 NVASASSKLFILNITYVVVFALCSPLGIALGMVITVMTNVTASSTLLTLLSVILQGIATG 309
+ AS ++ L+ N L IALG+ V + L +L+V +QG AT
Sbjct: 225 DWASINAGLYGFN------AVL---TAIALGLTFRPSIRVVWPTVLGVVLTVAVQG-ATT 274
Query: 310 TLM 312
TL+
Sbjct: 275 TLL 277
>gnl|CDD|110290 pfam01277, Oleosin, Oleosin.
Length = 118
Score = 29.2 bits (66), Expect = 1.3
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 282 VITVMTNVTASSTLLTLLSVILQGIATG----TLMYIVFFEILKP 322
V+ V+T + A +LL L + L G G T ++++F +L P
Sbjct: 5 VLAVVTALPAGGSLLVLAGLTLAGTVIGLAVATPLFVIFSPVLVP 49
>gnl|CDD|218943 pfam06219, DUF1005, Protein of unknown function (DUF1005). Family
of plant proteins with undetermined function.
Length = 420
Score = 30.2 bits (68), Expect = 1.6
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 319 ILKPHGTHCWKDWGFNTPWTPR 340
IL+P G WK WG W R
Sbjct: 247 ILRPDGDRSWKPWGRLEAWRER 268
>gnl|CDD|237323 PRK13263, ureE, urease accessory protein UreE; Provisional.
Length = 206
Score = 29.4 bits (66), Expect = 2.7
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 177 DHIHHDHSHDHSH 189
HDH HDH H
Sbjct: 179 SDHDHDHDHDHDH 191
Score = 29.4 bits (66), Expect = 2.7
Identities = 8/12 (66%), Positives = 8/12 (66%)
Query: 178 HIHHDHSHDHSH 189
H HH HSH HS
Sbjct: 169 HEHHGHSHSHSD 180
>gnl|CDD|223326 COG0248, GppA, Exopolyphosphatase [Nucleotide transport and
metabolism / Inorganic ion transport and metabolism].
Length = 492
Score = 29.6 bits (67), Expect = 2.7
Identities = 8/23 (34%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 178 HIHHDHSHDHS-HLLRSASLRNF 199
+I H H HS +++R++ L F
Sbjct: 372 NISHSGHHKHSAYIIRNSDLPGF 394
>gnl|CDD|131830 TIGR02783, TrbL_P, P-type conjugative transfer protein TrbL. The
TrbL protein is found in the trb locus of Agrobacterium
Ti plasmids where it is involved in the type IV
secretion system for plasmid conjugative transfer. TrbL
is a homolog of the F-type TraG protein (which is
believed to be a mating pair stabilization pore-forming
protein, pfam07916) as well as the vir system VirB6
protein [Cellular processes, Conjugation].
Length = 298
Score = 29.3 bits (66), Expect = 3.3
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 243 LGLQITNNVASASSKLF-ILNITYVVVFALCSPLGIALGMVITVMTNVTASSTLLTLLSV 301
GL I + V ++S++F +++ V++ AL L A V V+T V + L+ V
Sbjct: 112 NGLDIASKVLDSASQIFSPIDLIVVLLGALVIVLVFAFIAVEFVVTLV--EAYLVLNAGV 169
Query: 302 ILQGIA 307
IL G
Sbjct: 170 ILLGFG 175
>gnl|CDD|236558 PRK09545, znuA, high-affinity zinc transporter periplasmic
component; Reviewed.
Length = 311
Score = 28.8 bits (65), Expect = 4.2
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 175 ESDHIHHDHSHDHSH 189
+ HHD HDH+
Sbjct: 116 GAHDDHHDDDHDHAG 130
>gnl|CDD|238344 cd00625, ArsB_NhaD_permease, Anion permease ArsB/NhaD. These
permeases have been shown to translocate sodium,
arsenate, antimonite, sulfate and organic anions across
biological membranes in all three kingdoms of life. A
typical anion permease contains 8-13 transmembrane
helices and can function either independently as a
chemiosmotic transporter or as a channel-forming subunit
of an ATP-driven anion pump.
Length = 396
Score = 28.8 bits (65), Expect = 5.4
Identities = 29/123 (23%), Positives = 48/123 (39%), Gaps = 12/123 (9%)
Query: 199 FLIVMALSVHEVFEGLALGLEQVTTQVWYLLLAVSCHKFVIALCLGLQITNNVASASSKL 258
F++V AL + E LA L + L + +++ L +NV +
Sbjct: 269 FVLVGALESTGLLEWLAELLVALVGLPPLAALLLI---GLLSALLS-NFISNVPTV---- 320
Query: 259 FILNITYVVVFALCSPLGIALGMVITVMTNVTASSTLLTLLSVILQGIATGTLMYIVFFE 318
L + A P +AL + T+ N+T +L L+ + G A + I F E
Sbjct: 321 -ALLLPIAASLAPPEPAWLALALGSTLGGNLTLIGSLANLIPL---GAAENAGVGISFGE 376
Query: 319 ILK 321
LK
Sbjct: 377 FLK 379
>gnl|CDD|188082 TIGR00766, TIGR00766, inner membrane protein YhjD. This family,
including YhjD in E. coli, is a conserved inner membrane
protein homologous YihY, which in turn was incorrectly
assigned to be ribonuclease BN. This, any suggestion
this family is similar to ribonucleases should be
removed [Transcription, Degradation of RNA].
Length = 263
Score = 28.3 bits (63), Expect = 6.2
Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 11/102 (10%)
Query: 227 YLLLAVSCHKFVIALCLGLQITNNVASASSKLFILNITYVVVFALCSPLGIALGMVITVM 286
YL S ++AL L +T+ VA ++ L L + VF + I+V+
Sbjct: 125 YLDDFASLIGLLVALVATLALTS-VAGSAQVLIWLALPLFSVFDE-------IFRGISVL 176
Query: 287 TNVTASSTLLTLLS---VILQGIATGTLMYIVFFEILKPHGT 325
+V S L T + V L +A GTLM + FE+ K T
Sbjct: 177 VSVLVSWVLFTWMPREPVRLVTLARGTLMAAIGFELFKQVMT 218
>gnl|CDD|233196 TIGR00933, 2a38, potassium uptake protein, TrkH family. The
proteins of the Trk family are derived from
Gram-negative and Gram-positive bacteria, yeast and
wheat. The proteins of E. coli K12 TrkH and TrkG as well
as several yeast proteins have been functionally
characterized.The E. coli TrkH and TrkG proteins are
complexed to two peripheral membrane proteins, TrkA, an
NAD-binding protein, and TrkE, an ATP-binding protein.
This complex forms the potassium uptake system
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 390
Score = 28.4 bits (64), Expect = 6.5
Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 17/81 (20%)
Query: 80 TSVLMYFGG------GVLLATTFLHLLPEVKEQIEDLQKEKGLFSEK-----------EF 122
+LM+ GG G + TTF LL +V +I + +FS +
Sbjct: 264 LLLLMFIGGCSGSTAGGIKTTTFAILLKQVYREIRRGIHPRIIFSRRIGGKTIDKAILIS 323
Query: 123 PFAECIMCAGFFMMFTIESIV 143
++ ++ A F++ +E I
Sbjct: 324 VWSFFLVFALIFLLSILELIS 344
>gnl|CDD|217178 pfam02674, Colicin_V, Colicin V production protein. Colicin V
production protein is required in E. Coli for colicin V
production from plasmid pColV-K30. This protein is coded
for in the purF operon.
Length = 145
Score = 27.1 bits (61), Expect = 8.7
Identities = 14/86 (16%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 237 FVIALCLGLQITNNVASA-----SSKLFILNITYVVVFALCSPLGIALGMVITVMTNVTA 291
+V+A + +A S I ++++F L +G LG+++ + ++
Sbjct: 31 WVVAFFVASLFYPPLAPLLAEYVLSPALAAIIAFLLIFLLVLLIGSLLGVLLRKLVKLSG 90
Query: 292 SSTLLTLLSVILQGIATGTLMYIVFF 317
L LL + + ++ ++ F
Sbjct: 91 LGGLDRLLGAVFGLLRGLLILSVLLF 116
>gnl|CDD|223772 COG0700, SpmB, Uncharacterized membrane protein [Function unknown].
Length = 162
Score = 27.3 bits (61), Expect = 9.8
Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 15/116 (12%)
Query: 207 VHEVF-EGLALGLEQVTTQVWYL---LLAVSCHKFVIALCLGLQITNNVASASSKLFILN 262
V+E+F EG G TT + YL L+ ++ + AL I + V S ++
Sbjct: 16 VYEMFVEGAKEGFTIATTILPYLVAMLVIIAAFRISGALDWVGHILSPVMS------LIG 69
Query: 263 I-TYVVVFALCSPL--GIALGMVITVMTNVTASSTLLTLLSVILQGIATGTLMYIV 315
+ AL P+ G A+G+ + T S + T+ + QG +T T Y++
Sbjct: 70 LPGEAAPVALAKPMSGGGAVGVAADLATTYGLDSFIGTVAAPA-QG-STETTFYVL 123
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.137 0.410
Gapped
Lambda K H
0.267 0.0696 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,232,572
Number of extensions: 1756974
Number of successful extensions: 2958
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2905
Number of HSP's successfully gapped: 90
Length of query: 371
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 273
Effective length of database: 6,590,910
Effective search space: 1799318430
Effective search space used: 1799318430
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.0 bits)