RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5905
(371 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.2 bits (109), Expect = 1e-05
Identities = 60/388 (15%), Positives = 113/388 (29%), Gaps = 148/388 (38%)
Query: 62 PIIIRHRKRGSSFVFQNVTSV--LMYFGGGVLLATTFLHLLPEVKEQIEDLQKEKGLFSE 119
P+ + H GS ++V V +F L F +LPE E + +
Sbjct: 8 PLTLSH---GS---LEHVLLVPTASFFIASQLQEQ-FNKILPEPTEGFAADDEPT---TP 57
Query: 120 KEFPFAECIMCAGFFMMFTIESI----------------------------VHSLMDHSG 151
E + F+ + + +H+L
Sbjct: 58 AEL-VGK-------FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLL 109
Query: 152 HEVKNINIKTKN-----YKTCNDSVQVIESDHIHHDHSHDHSHLLRSAS----------- 195
E +KTK + + + +S L R+
Sbjct: 110 QENDTTLVKTKELIKNYITARIMAKRPFDKKS--------NSALFRAVGEGNAQLVAIFG 161
Query: 196 -----------LRNFLIVMALSVHEVFEGLALGLEQVTTQV---------------W--- 226
LR+ + V ++ + A L ++ W
Sbjct: 162 GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN 221
Query: 227 --------YLLLA-VSCHKFVIALCLGLQITNNVASASSKLFILNITYVVVFA-LCSPLG 276
YLL +SC +I + +Q+ + V +A +L T + + L G
Sbjct: 222 PSNTPDKDYLLSIPISCP--LIGV---IQLAHYVVTAK----LLGFTPGELRSYLKGATG 272
Query: 277 IALGMVITVMTNVTASSTLLTLLSVILQGIATGTLMYIVFFEILKPHGTHCWKDWGFNTP 336
+ G+V V + + + + + + I ++FF I G C++
Sbjct: 273 HSQGLVTAVA--IAETDSWESFFVSVRKAIT------VLFF-I----GVRCYE------- 312
Query: 337 WTPRNNIRAPSMPEGNILPNLDSIEKNH 364
P ++ PS+ E DS+E N
Sbjct: 313 AYPNTSL-PPSILE-------DSLENNE 332
Score = 40.0 bits (93), Expect = 0.001
Identities = 62/396 (15%), Positives = 114/396 (28%), Gaps = 141/396 (35%)
Query: 2 STVLNLINNSASSRDHYNTDYNVQ-----PELQLSFYFAHTSNLAVAKLS--AITVLGLG 54
T+ LI + + + N+ P + L +S I V+ L
Sbjct: 193 ETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY-----LLSIPISCPLIGVIQLA 247
Query: 55 SLL-----LGLCPIIIRHRKRGSSFVFQN-VTSVLM-------YFGGGVLLATTFLHLLP 101
+ LG P +R +G++ Q VT+V + F V A T L +
Sbjct: 248 HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFI- 306
Query: 102 EVKEQIEDLQKEKGLFSEKEFPFAECIMCAGFFMMFTIE-SIVHSLMDHSGHE------- 153
G+ + +P ++ SI+ +++
Sbjct: 307 -------------GVRCYEAYPNT------------SLPPSILEDSLEN-NEGVPSPMLS 340
Query: 154 VKNINIKTKNYKTCNDSVQVIESDHIHHDHSH--DHSHLLRSASL----RNF-------- 199
+ N+ + QV + +++ +SH + SL +N
Sbjct: 341 ISNLTQE-----------QVQD--YVNKTNSHLPAGKQV--EISLVNGAKNLVVSGPPQS 385
Query: 200 LIVMALSVHEVFEGLALGLEQ---------VTTQVWYLLLAVSCH----KFVIALCLGLQ 246
L + L++ + GL+Q + +L +A H L
Sbjct: 386 LYGLNLTLRKAKA--PSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDL 443
Query: 247 ITNNVASASSKLFILNITYVVVF---------ALCSPLGIALGMVITVM-------TNVT 290
+ NNV+ + + I V+ L + + I + T
Sbjct: 444 VKNNVSFNAKD---IQIP---VYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFK 497
Query: 291 AS----------STLLTLLSVILQG-----IATGTL 311
A+ S L L G I GTL
Sbjct: 498 ATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTL 533
Score = 28.5 bits (63), Expect = 4.5
Identities = 54/315 (17%), Positives = 91/315 (28%), Gaps = 128/315 (40%)
Query: 66 RHRKRGSSF-----VFQNVTSVLMYFGG--GVLLA---------------TTFLHLLPEV 103
H K F V N ++ ++FGG G + + E+
Sbjct: 1651 NHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEI 1710
Query: 104 KEQIEDL--QKEKGLFSEKEF--PFAECIM---CAGFFMM-----FTIESIV--HSLMDH 149
E + EKGL S +F P + A F + ++ HSL
Sbjct: 1711 NEHSTSYTFRSEKGLLSATQFTQP---ALTLMEKAAFEDLKSKGLIPADATFAGHSL--- 1764
Query: 150 SGHEVKNINIKTKNYKTCNDSVQVIESDHIHHDHSHDHSHLLRSASLRNFLI----VMAL 205
G E Y +A L VM++
Sbjct: 1765 -G-E----------Y----------------------------AA-----LASLADVMSI 1779
Query: 206 S--VHEVFE-GLALGL-----EQVTTQVWYLLLAVSCHKFVIALCL-GLQITNNVASASS 256
V VF G+ + + E + Y ++A++ + + LQ +
Sbjct: 1780 ESLVEVVFYRGMTMQVAVPRDELGRSN--YGMIAINPGRVAASFSQEALQYVVERVGKRT 1837
Query: 257 KLFI----LNI---TYVVVFALCSPLGIALGMVITVMTNVTASSTLLTLLSVI-LQGIAT 308
+ N+ YV A G ++ A T+ +L+ I LQ I
Sbjct: 1838 GWLVEIVNYNVENQQYV----------AA-G-------DLRALDTVTNVLNFIKLQKIDI 1879
Query: 309 GTLMYIVFFEILKPH 323
L + E ++ H
Sbjct: 1880 IELQKSLSLEEVEGH 1894
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.1 bits (77), Expect = 0.089
Identities = 28/221 (12%), Positives = 71/221 (32%), Gaps = 60/221 (27%)
Query: 97 LHLLPEVKEQIEDLQKEKGLF---------------------SEKEFPFAECIMCAGFFM 135
L ++++ + +L+ K + + + F I F++
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK--I----FWL 187
Query: 136 MFTIESIVHSLMDHSGHEVKNINIK-TKNYKTCNDSVQVIESDHIHHDHSHDHSHLLRSA 194
+ ++++ ++ + + N+ + +D I+ H + LL+S
Sbjct: 188 NLKNCNSPETVLEM----LQKLLYQIDPNWTSRSDHSSNIKLRI--HSIQAELRRLLKSK 241
Query: 195 SLRNFLIVMA-LSVHEVFEGLALG---LEQVTTQ----VWYLLLAVSCHKFVIALCLGLQ 246
N L+V+ + + + L L +TT+ +L A + H + + L
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNLSCKIL--LTTRFKQVTDFLSAATTTHISLDHHSMTL- 298
Query: 247 ITNNVASASSKLF--ILNITYVVVFAL------CSPLGIAL 279
L L+ L +P +++
Sbjct: 299 ----TPDEVKSLLLKYLDCR---PQDLPREVLTTNPRRLSI 332
>3ddd_A Putative acetyltransferase; NP_142035.1, structural genomi center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: COA; 2.25A {Pyrococcus horikoshii}
Length = 288
Score = 31.5 bits (71), Expect = 0.39
Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 176 SDHIHHDHSHDHSHL----LRSASLRNFLIVMALSVHEVFEGLALGLEQVTTQVWYLLLA 231
SD IHH H H++ + +R A+ + ++++ + G + + + L
Sbjct: 3 SDKIHHHHHHENLYFQGMIIRYATPDDIEDMVSIFID---AYNFPGPRESVKSSFEISLE 59
Query: 232 VSCHKFVIA 240
V ++A
Sbjct: 60 VQPDGCLLA 68
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.54
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 8/37 (21%)
Query: 104 KEQIEDLQKEKGLFSEKEFPFAECIMCAGFFMMFTIE 140
K+ ++ LQ L+++ P A I A T+E
Sbjct: 19 KQALKKLQASLKLYADDSAP-ALAIK-A------TME 47
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A
{Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A
1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A
Length = 161
Score = 29.1 bits (66), Expect = 1.5
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 11/42 (26%)
Query: 127 CIMCAGFFMMFTIESIV-----------HSLMDHSGHEVKNI 157
C MC G +M+ I V + GHEV +
Sbjct: 94 CDMCTGAIIMYGIPRCVVGENVNFKSKGEKYLQTRGHEVVVV 135
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A
{Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A*
3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Length = 266
Score = 29.4 bits (66), Expect = 1.7
Identities = 7/47 (14%), Positives = 14/47 (29%)
Query: 316 FFEILKPHGTHCWKDWGFNTPWTPRNNIRAPSMPEGNILPNLDSIEK 362
++ LKP GT D+ + + L ++
Sbjct: 145 CYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEEYAD 191
>3hht_A NitrIle hydratase alpha subunit; alpha and beta proteins (A+B),
lyase; 1.16A {Geobacillus pallidus} PDB: 2dpp_A 1v29_A
Length = 216
Score = 28.8 bits (64), Expect = 2.1
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 7/35 (20%)
Query: 174 IESDHIHHDHSHDHSH-------LLRSASLRNFLI 201
I + + D H H R+ +L + LI
Sbjct: 3 IGQKNTNIDPRFPHHHPRPQSFWEARAKALESLLI 37
>2zzd_C Thiocyanate hydrolase subunit gamma; scnase, cobalt,
metalloprotein, sulfenic acid, sulfinic acid, nitrIle
hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A
{Thiobacillus thioparus} PDB: 2dxc_C* 2dxb_C 2dd5_C*
2dd4_C*
Length = 243
Score = 28.9 bits (64), Expect = 2.5
Identities = 8/14 (57%), Positives = 8/14 (57%)
Query: 176 SDHIHHDHSHDHSH 189
S HDH HDH H
Sbjct: 2 SADHDHDHDHDHDH 15
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 28.0 bits (62), Expect = 5.3
Identities = 12/116 (10%), Positives = 24/116 (20%), Gaps = 16/116 (13%)
Query: 97 LHLLPEVKEQIEDLQKEKGLFSEKEFPFAECIMCAGFFMMFTIESIVHSLMDHSGHEVKN 156
H + + E + G F E P E ++ V +
Sbjct: 64 THPVNDTIENLRQAYLRMG-FEEYINPVIV------------DERDIYKQFGPEAMAVLD 110
Query: 157 INIKTKNYKTCNDSVQVIESDHIHHDHSHDHSHLLRSASLRNFLIVMALSVHEVFE 212
+ + + I SL+ L + +
Sbjct: 111 ---RCFYLAGLPRPDVGLSDEKISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDD 163
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 28.0 bits (62), Expect = 6.0
Identities = 12/116 (10%), Positives = 24/116 (20%), Gaps = 16/116 (13%)
Query: 97 LHLLPEVKEQIEDLQKEKGLFSEKEFPFAECIMCAGFFMMFTIESIVHSLMDHSGHEVKN 156
H + + E + G F E P E ++ V +
Sbjct: 64 THPVNDTIENLRQAYLRMG-FEEYINPVIV------------DERDIYKQFGPEAMAVLD 110
Query: 157 INIKTKNYKTCNDSVQVIESDHIHHDHSHDHSHLLRSASLRNFLIVMALSVHEVFE 212
+ + + I SL+ L + +
Sbjct: 111 ---RCFYLAGLPRPDVGLSDEKISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDD 163
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural
genomics, PSI-2, protein structure initiative; 2.30A
{Shigella flexneri 2A} SCOP: c.94.1.1
Length = 231
Score = 27.6 bits (61), Expect = 6.1
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 186 DHSHLLRSASLRNFLIVMALSVHEVFEGLALGLEQV 221
D+ LL + N + M L ++EGLA GL+
Sbjct: 5 DNKALLSHVDINNVVCAMPLPYTRLYEGLASGLKAQ 40
>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str}
Length = 508
Score = 27.6 bits (62), Expect = 6.5
Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 8/75 (10%)
Query: 178 HIHHDHSHDHS-HLLRSASLRNF----LIVMALSVHEVFEGLALGLEQVTTQVWYLLLAV 232
H D+ + +++ +S +AL+ + FEGL + TT+ +
Sbjct: 374 RAHPDYRGLQALNIIAHSSFVAITHPGRAYIALANYYRFEGL---NDNGTTEPLAAMAGE 430
Query: 233 SCHKFVIALCLGLQI 247
+ L L++
Sbjct: 431 RLQELGKLLGGLLRV 445
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.137 0.410
Gapped
Lambda K H
0.267 0.0684 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,413,366
Number of extensions: 317137
Number of successful extensions: 1158
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1152
Number of HSP's successfully gapped: 21
Length of query: 371
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 276
Effective length of database: 4,049,298
Effective search space: 1117606248
Effective search space used: 1117606248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.2 bits)