BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5907
(56 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O54941|SMCE1_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily E member 1 OS=Mus musculus
GN=Smarce1 PE=1 SV=1
Length = 411
Score = 92.8 bits (229), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 42/54 (77%), Positives = 47/54 (87%)
Query: 1 MPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKI 54
MPYMRYSRKVWDQVKA N DLKLWEIGKIIG MWRDL +++K EY+ +YE EKI
Sbjct: 71 MPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKI 124
>sp|Q56A18|SMCE1_RAT SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily E member 1 OS=Rattus norvegicus
GN=Smarce1 PE=1 SV=1
Length = 376
Score = 92.8 bits (229), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 42/54 (77%), Positives = 47/54 (87%)
Query: 1 MPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKI 54
MPYMRYSRKVWDQVKA N DLKLWEIGKIIG MWRDL +++K EY+ +YE EKI
Sbjct: 36 MPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKI 89
>sp|Q969G3|SMCE1_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily E member 1 OS=Homo sapiens
GN=SMARCE1 PE=1 SV=2
Length = 411
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 42/54 (77%), Positives = 47/54 (87%)
Query: 1 MPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKI 54
MPYMRYSRKVWDQVKA N DLKLWEIGKIIG MWRDL +++K EY+ +YE EKI
Sbjct: 71 MPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKI 124
>sp|Q91ZW1|TFAM_RAT Transcription factor A, mitochondrial OS=Rattus norvegicus GN=Tfam
PE=2 SV=1
Length = 244
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 3 YMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQE-KIYK 56
Y+R+S + + KA++ D K+ E+ + I MWR+LPE +K Y D++ E K+YK
Sbjct: 56 YLRFSTEQLPKFKAKHPDAKVSELIRKIAAMWRELPEAEKKVYEADFKAEWKVYK 110
>sp|P33417|IXR1_YEAST Intrastrand cross-link recognition protein OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=IXR1 PE=1
SV=2
Length = 597
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 33/50 (66%)
Query: 2 PYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQ 51
P++++++++ V +N D L EI KIIG+ WR+L +K EY E Y++
Sbjct: 440 PFIQFTQEIRPTVVKENPDKGLIEITKIIGERWRELDPAKKAEYTETYKK 489
Score = 29.3 bits (64), Expect = 7.7, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 27/47 (57%)
Query: 3 YMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDY 49
Y +S + +++ Q + K+ E+ K+ W++L +DQK + E++
Sbjct: 368 YFLFSMSIRNELLQQFPEAKVPELSKLASARWKELTDDQKKPFYEEF 414
>sp|P40630|TFAM_MOUSE Transcription factor A, mitochondrial OS=Mus musculus GN=Tfam PE=1
SV=2
Length = 243
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 3 YMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQE-KIYK 56
Y+R+S + + KA++ D KL E+ + I +WR+LPE +K Y D++ E K YK
Sbjct: 56 YLRFSTEQLPKFKAKHPDAKLSELVRKIAALWRELPEAEKKVYEADFKAEWKAYK 110
>sp|Q00059|TFAM_HUMAN Transcription factor A, mitochondrial OS=Homo sapiens GN=TFAM PE=1
SV=1
Length = 246
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 3 YMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQE-KIYK 56
Y+R+S++ KAQN D K E+ + I Q WR+LP+ +K Y + Y E ++YK
Sbjct: 57 YLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYK 111
>sp|Q6CVH3|NHP6_KLULA Non-histone chromosomal protein 6 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=NHP6 PE=3 SV=1
Length = 93
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 31/51 (60%)
Query: 3 YMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEK 53
YM ++ + D V+A+N + ++G+I+G+ W+ L ED+K Y E +K
Sbjct: 25 YMFFANENRDIVRAENPGITFGQVGRILGEKWKALNEDEKAPYEAKAEADK 75
>sp|Q5D144|TFAM_PIG Transcription factor A, mitochondrial OS=Sus scrofa GN=TFAM PE=2
SV=1
Length = 246
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 3 YMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQE-KIYK 56
Y+R+S++ KAQN D K E+ K I ++WR+LP+ +K Y + Y + ++YK
Sbjct: 57 YVRFSKEQLPIFKAQNPDAKNSELIKKIAELWRELPDSEKKIYEDAYRADWQVYK 111
>sp|Q0II87|TFAM_BOVIN Transcription factor A, mitochondrial OS=Bos taurus GN=TFAM PE=2
SV=1
Length = 246
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 3 YMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQE-KIYK 56
Y+R+S++ KAQN D K E+ K I ++WR+LP+ +K Y + Y + ++YK
Sbjct: 57 YVRFSKEQLPIFKAQNPDAKNSELIKKIAKLWRELPDSEKKIYEDAYRADWQVYK 111
>sp|Q75B82|NHP6_ASHGO Non-histone chromosomal protein 6 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=NHP6
PE=3 SV=1
Length = 94
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 31/51 (60%)
Query: 3 YMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEK 53
YM ++ + D V+A+N + ++G+++G+ W+ L +D+K Y E +K
Sbjct: 28 YMFFANENRDIVRAENPGISFGQVGRVLGEKWKALSDDEKQPYEAKAEADK 78
>sp|Q9LEF5|SSRP1_MAIZE FACT complex subunit SSRP1 OS=Zea mays GN=SSRP1 PE=1 SV=1
Length = 639
Score = 37.4 bits (85), Expect = 0.025, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 30/52 (57%)
Query: 2 PYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEK 53
P+M +S +K+ N DL EI K +G+MW+ + ++K Y++ + +K
Sbjct: 563 PFMYFSMAERGNMKSSNPDLPTTEIAKKLGEMWQKMSGEEKQPYIQQAQVDK 614
>sp|Q02486|ABF2_YEAST ARS-binding factor 2, mitochondrial OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ABF2 PE=1 SV=1
Length = 183
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 33/50 (66%)
Query: 2 PYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQ 51
P+++Y+ +V QV AQ+ D ++ KIIG W+ L + K +Y+++Y++
Sbjct: 122 PFIKYANEVRSQVFAQHPDKSQLDLMKIIGDKWQSLDQSIKDKYIQEYKK 171
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 3 YMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKIY 55
Y Y + Q +N L+ EI KI G+ W++L D K +Y+ E++K+Y
Sbjct: 50 YFLYLQDHRSQFVKENPTLRPAEISKIAGEKWQNLEADIKEKYIS--ERKKLY 100
>sp|Q4H0T5|TFAM_TRACR Transcription factor A, mitochondrial OS=Trachypithecus cristatus
GN=TFAM PE=2 SV=1
Length = 246
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 3 YMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQE-KIYK 56
Y+R+S++ KA+N D K E+ + I ++WR+LP+ +K Y + Y + ++YK
Sbjct: 57 YLRFSKEQLPIFKAENPDAKPTELIRRIAKLWRELPDSKKKIYQDAYRADWQVYK 111
>sp|Q6DIJ5|HM20A_XENTR High mobility group protein 20A OS=Xenopus tropicalis GN=hmg20a
PE=2 SV=1
Length = 345
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 31/51 (60%)
Query: 3 YMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEK 53
Y+R+ + +Q++ + D+ EI +I+G W LP +K Y+++ E++K
Sbjct: 108 YVRFMNERREQLRTERPDVPFPEITRIVGSEWSKLPAHEKQHYLDEAEKDK 158
>sp|Q9LGR0|SSP1A_ORYSJ FACT complex subunit SSRP1-A OS=Oryza sativa subsp. japonica
GN=SSRP1-A PE=2 SV=1
Length = 641
Score = 36.6 bits (83), Expect = 0.052, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 2 PYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEK 53
P+M +S +K N DL EI K +G+MW+ + ++K Y++ + +K
Sbjct: 562 PFMYFSMAERGNMKNNNPDLPTTEIAKKLGEMWQKMTGEEKQPYIQQSQVDK 613
>sp|P0CB47|UBFL1_HUMAN Putative upstream-binding factor 1-like protein 1 OS=Homo sapiens
GN=UBTFL1 PE=5 SV=1
Length = 393
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 31/51 (60%)
Query: 3 YMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEK 53
Y R+ ++ W Q ++ E+ KI+ + +R+LPE K +Y++D+ +EK
Sbjct: 107 YNRFFKESWPQYSQMYPGMRSQELTKILSKKYRELPEQMKQKYIQDFRKEK 157
>sp|Q65WY8|SSP1B_ORYSJ FACT complex subunit SSRP1-B OS=Oryza sativa subsp. japonica
GN=SSRP1-B PE=2 SV=1
Length = 640
Score = 35.8 bits (81), Expect = 0.073, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 2 PYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEK 53
P+M +S+ +K N +L EI K +G+ W+ + ++K YVE + +K
Sbjct: 564 PFMYFSKAERANLKNSNPELATTEIAKKLGERWQKMTAEEKQPYVEQSQVDK 615
>sp|Q6AZF8|HM20A_XENLA High mobility group protein 20A OS=Xenopus laevis GN=hmg20a PE=2
SV=1
Length = 345
Score = 35.4 bits (80), Expect = 0.092, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 31/51 (60%)
Query: 3 YMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEK 53
Y+R+ + +Q++ + D+ EI +I+G W LP +K Y+++ E++K
Sbjct: 108 YVRFMNERREQLRTERPDVPFPEITRIVGSEWSKLPAHEKQHYLDEAEKDK 158
>sp|Q9T012|HMG13_ARATH High mobility group B protein 13 OS=Arabidopsis thaliana GN=HMGB13
PE=2 SV=1
Length = 446
Score = 35.4 bits (80), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 2 PYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEK 53
PY+ + + W++VK QN + E I+G W+ + ++K Y E Y+ +K
Sbjct: 135 PYILWCKDNWNEVKKQNPEADFKETSNILGAKWKGISAEEKKPYEEKYQADK 186
>sp|Q99PM1|TOX4_RAT TOX high mobility group box family member 4 OS=Rattus norvegicus
GN=Tox4 PE=2 SV=1
Length = 619
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 23/51 (45%)
Query: 3 YMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEK 53
Y + R +K QN + E+ KI+ MW L E+QK Y E K
Sbjct: 230 YALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAAK 280
>sp|Q5R6A9|TOX4_PONAB TOX high mobility group box family member 4 OS=Pongo abelii GN=TOX4
PE=2 SV=2
Length = 621
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 23/51 (45%)
Query: 3 YMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEK 53
Y + R +K QN + E+ KI+ MW L E+QK Y E K
Sbjct: 230 YALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAAK 280
>sp|Q8BU11|TOX4_MOUSE TOX high mobility group box family member 4 OS=Mus musculus GN=Tox4
PE=1 SV=3
Length = 619
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 23/51 (45%)
Query: 3 YMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEK 53
Y + R +K QN + E+ KI+ MW L E+QK Y E K
Sbjct: 230 YALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAAK 280
>sp|O94842|TOX4_HUMAN TOX high mobility group box family member 4 OS=Homo sapiens GN=TOX4
PE=1 SV=1
Length = 621
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 23/51 (45%)
Query: 3 YMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEK 53
Y + R +K QN + E+ KI+ MW L E+QK Y E K
Sbjct: 230 YALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAAK 280
>sp|B7SBD2|TOX3_RAT TOX high mobility group box family member 3 OS=Rattus norvegicus
GN=Tox3 PE=1 SV=1
Length = 577
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 23/51 (45%)
Query: 3 YMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEK 53
Y + R +K QN + E+ KI+ MW L E+QK Y E K
Sbjct: 261 YALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAAK 311
>sp|Q80W03|TOX3_MOUSE TOX high mobility group box family member 3 OS=Mus musculus GN=Tox3
PE=2 SV=1
Length = 575
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 23/51 (45%)
Query: 3 YMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEK 53
Y + R +K QN + E+ KI+ MW L E+QK Y E K
Sbjct: 261 YALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAAK 311
>sp|O15405|TOX3_HUMAN TOX high mobility group box family member 3 OS=Homo sapiens GN=TOX3
PE=1 SV=2
Length = 576
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 23/51 (45%)
Query: 3 YMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEK 53
Y + R +K QN + E+ KI+ MW L E+QK Y E K
Sbjct: 262 YALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAAK 312
>sp|Q6IRR0|TOX4B_XENLA TOX high mobility group box family member 4-B OS=Xenopus laevis
GN=tox4-b PE=2 SV=1
Length = 594
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 23/51 (45%)
Query: 3 YMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEK 53
Y + R +K QN + E+ KI+ MW L E+QK Y E K
Sbjct: 229 YALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAAK 279
>sp|A4QNP0|TOX4_XENTR TOX high mobility group box family member 4 OS=Xenopus tropicalis
GN=tox4 PE=2 SV=1
Length = 597
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 23/51 (45%)
Query: 3 YMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEK 53
Y + R +K QN + E+ KI+ MW L E+QK Y E K
Sbjct: 229 YALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAAK 279
>sp|Q0P5K4|TOX4_BOVIN TOX high mobility group box family member 4 OS=Bos taurus GN=TOX4
PE=2 SV=1
Length = 619
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 23/51 (45%)
Query: 3 YMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEK 53
Y + R +K QN + E+ KI+ MW L E+QK Y E K
Sbjct: 230 YALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAAK 280
>sp|Q6DJL0|TOX4A_XENLA TOX high mobility group box family member 4-A OS=Xenopus laevis
GN=tox4-a PE=2 SV=1
Length = 597
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 23/51 (45%)
Query: 3 YMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEK 53
Y + R +K QN + E+ KI+ MW L E+QK Y E K
Sbjct: 229 YALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAAK 279
>sp|P11633|NHP6B_YEAST Non-histone chromosomal protein 6B OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NHP6B PE=1 SV=3
Length = 99
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 28/43 (65%)
Query: 3 YMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEY 45
YM ++ + D V+++N D+ ++G+I+G+ W+ L ++K Y
Sbjct: 34 YMFFANENRDIVRSENPDVTFGQVGRILGERWKALTAEEKQPY 76
>sp|Q28GD5|SOX7_XENTR Transcription factor Sox-7 OS=Xenopus tropicalis GN=sox7 PE=2 SV=1
Length = 362
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 31/52 (59%)
Query: 3 YMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKI 54
+M +++ ++ QN DL E+ K++G+ W+ L QK YVE+ E+ ++
Sbjct: 49 FMVWAKDERKRLAVQNPDLHNAELSKMLGKSWKALSPAQKRPYVEEAERLRV 100
>sp|Q86U86|PB1_HUMAN Protein polybromo-1 OS=Homo sapiens GN=PBRM1 PE=1 SV=1
Length = 1689
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 3 YMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVE 47
Y+ +S ++ +KAQ+ D E+ +++G WR+L +K EY E
Sbjct: 1386 YILFSSEMRAVIKAQHPDYSFGELSRLVGTEWRNLETAKKAEYEE 1430
>sp|O42342|SOX7_XENLA Transcription factor Sox-7 OS=Xenopus laevis GN=sox7 PE=2 SV=1
Length = 362
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 31/52 (59%)
Query: 3 YMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKI 54
+M +++ ++ QN DL E+ K++G+ W+ L QK YVE+ E+ ++
Sbjct: 49 FMVWAKDERKRLAVQNPDLHNAELSKMLGKSWKALSPAQKRPYVEEAERLRV 100
>sp|Q9UVL1|NHP6_CANAL Non-histone chromosomal protein 6 OS=Candida albicans (strain
SC5314 / ATCC MYA-2876) GN=NHP6 PE=3 SV=1
Length = 92
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 29/51 (56%)
Query: 3 YMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEK 53
YM ++ + D V+A+N + ++GK++G+ W+ L + K Y E +K
Sbjct: 26 YMFFANENRDIVRAENPGISFGQVGKLLGEKWKALNSEDKLPYENKAEADK 76
>sp|Q90941|PB1_CHICK Protein polybromo-1 OS=Gallus gallus GN=PBRM1 PE=1 SV=1
Length = 1633
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 3 YMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEY 45
Y+ +S ++ +KAQ+ D E+ +++G WR+L +K EY
Sbjct: 1385 YILFSSEMRPVIKAQHPDYSFGELSRLVGTEWRNLEATKKAEY 1427
>sp|P40646|SOX7_MOUSE Transcription factor SOX-7 OS=Mus musculus GN=Sox7 PE=1 SV=2
Length = 380
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 31/52 (59%)
Query: 3 YMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKI 54
+M +++ ++ QN DL E+ K++G+ W+ L QK YV++ E+ ++
Sbjct: 52 FMVWAKDERKRLAVQNPDLHNAELSKMLGKSWKALTLSQKRPYVDEAERLRL 103
>sp|Q6BRB4|NHP6_DEBHA Non-histone chromosomal protein 6 OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=NHP6 PE=3 SV=1
Length = 92
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 3 YMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDL-PEDQ 41
YM ++ + D V+A+N + ++GK++G+ W+ L PED+
Sbjct: 26 YMFFANENRDIVRAENPGISFGQVGKLLGEKWKALTPEDK 65
>sp|Q8BSQ9|PB1_MOUSE Protein polybromo-1 OS=Mus musculus GN=Pbrm1 PE=1 SV=4
Length = 1634
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 3 YMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEY 45
Y+ +S ++ +KAQ+ D E+ +++G WR+L +K EY
Sbjct: 1386 YILFSSEMRAVIKAQHPDYSFGELSRLVGTEWRNLETAKKAEY 1428
>sp|Q9BT81|SOX7_HUMAN Transcription factor SOX-7 OS=Homo sapiens GN=SOX7 PE=1 SV=1
Length = 388
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 31/52 (59%)
Query: 3 YMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKI 54
+M +++ ++ QN DL E+ K++G+ W+ L QK YV++ E+ ++
Sbjct: 52 FMVWAKDERKRLAVQNPDLHNAELSKMLGKSWKALTLSQKRPYVDEAERLRL 103
>sp|P0CB48|UBFL6_HUMAN Putative upstream-binding factor 1-like protein 6 OS=Homo sapiens
GN=UBTFL6 PE=5 SV=1
Length = 400
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 32/51 (62%)
Query: 3 YMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEK 53
Y+R+ ++ W Q ++ E+ KI+ + +++LPE K ++++D+ +EK
Sbjct: 114 YIRFFKENWPQYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQDFRKEK 164
>sp|Q6CC79|NHP6_YARLI Non-histone chromosomal protein 6 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=NHP6 PE=3 SV=1
Length = 103
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 3 YMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVE 47
YM ++ D ++A N + ++GK +G+ W+ L + +K Y E
Sbjct: 32 YMFFANDNRDAIRADNPGIAFGQVGKALGEKWKTLTDAEKVPYEE 76
>sp|Q76IQ7|TOX2_RAT TOX high mobility group box family member 2 OS=Rattus norvegicus
GN=Tox2 PE=2 SV=1
Length = 473
Score = 33.9 bits (76), Expect = 0.27, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 22/51 (43%)
Query: 3 YMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEK 53
Y + R +K QN ++ KI+ MW L E+QK Y E K
Sbjct: 211 YALFFRDTQAAIKGQNPSATFGDVSKIVASMWDSLGEEQKQAYKRKTEAAK 261
>sp|P11632|NHP6A_YEAST Non-histone chromosomal protein 6A OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NHP6A PE=1 SV=1
Length = 93
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 3 YMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEY 45
YM ++ + D V+++N D+ ++GK +G+ W+ L ++K Y
Sbjct: 28 YMFFANENRDIVRSENPDITFGQVGKKLGEKWKALTPEEKQPY 70
>sp|Q05153|SSRP1_ARATH FACT complex subunit SSRP1 OS=Arabidopsis thaliana GN=SSRP1 PE=1
SV=2
Length = 646
Score = 33.9 bits (76), Expect = 0.34, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 3 YMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEY 45
+M +S+ D +K ++ + E+GK++G WR + D K Y
Sbjct: 569 FMFFSQMERDNIKKEHPGIAFGEVGKVLGDKWRQMSADDKEPY 611
>sp|Q4IQX3|NHP6_GIBZE Non-histone chromosomal protein 6 OS=Gibberella zeae (strain PH-1
/ ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=NHP6 PE=3
SV=1
Length = 101
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 26/43 (60%)
Query: 3 YMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEY 45
YM ++ + + V+ +N + ++GK++G+ W+ L E Q+ Y
Sbjct: 31 YMFFANEQRENVREENPGISFGQVGKLLGERWKALNEKQRAPY 73
>sp|Q66JW3|TOX_MOUSE Thymocyte selection-associated high mobility group box protein TOX
OS=Mus musculus GN=Tox PE=1 SV=2
Length = 526
Score = 33.5 bits (75), Expect = 0.39, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 3 YMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEY 45
Y + R +K QN + E+ KI+ MW L E+QK Y
Sbjct: 268 YALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQKQVY 310
>sp|O94900|TOX_HUMAN Thymocyte selection-associated high mobility group box protein TOX
OS=Homo sapiens GN=TOX PE=2 SV=3
Length = 526
Score = 33.5 bits (75), Expect = 0.39, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 3 YMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEY 45
Y + R +K QN + E+ KI+ MW L E+QK Y
Sbjct: 268 YALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQKQVY 310
>sp|Q4WY33|NHP6_ASPFU Non-histone chromosomal protein 6 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
GN=nhp6 PE=3 SV=1
Length = 104
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 28/45 (62%)
Query: 3 YMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVE 47
YM ++ + D+V+ +N + ++GK++G+ W+ L + ++ Y E
Sbjct: 32 YMFFANENRDKVREENPGISFGQVGKMLGERWKALSDSERRPYEE 76
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.136 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,215,106
Number of Sequences: 539616
Number of extensions: 714468
Number of successful extensions: 2464
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2322
Number of HSP's gapped (non-prelim): 153
length of query: 56
length of database: 191,569,459
effective HSP length: 29
effective length of query: 27
effective length of database: 175,920,595
effective search space: 4749856065
effective search space used: 4749856065
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)