Query psy5907
Match_columns 56
No_of_seqs 126 out of 1035
Neff 8.7
Searched_HMMs 29240
Date Fri Aug 16 21:20:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5907.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5907hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wgf_A Upstream binding factor 99.9 1.4E-21 4.8E-26 98.5 7.0 54 1-54 26-79 (90)
2 2lef_A LEF-1 HMG, protein (lym 99.9 2.9E-21 9.8E-26 96.6 8.0 54 1-54 8-61 (86)
3 4a3n_A Transcription factor SO 99.9 1.9E-21 6.6E-26 93.9 6.8 54 1-54 8-61 (71)
4 1j46_A SRY, sex-determining re 99.9 4E-21 1.4E-25 95.9 8.0 54 1-54 10-63 (85)
5 1gt0_D Transcription factor SO 99.9 3.9E-21 1.3E-25 94.9 7.6 54 1-54 8-61 (80)
6 1hry_A Human SRY; DNA, DNA-bin 99.9 2.1E-21 7.2E-26 95.0 6.5 54 1-54 10-63 (76)
7 1wz6_A HMG-box transcription f 99.9 2.6E-21 8.7E-26 96.0 6.8 54 1-54 13-66 (82)
8 2d7l_A WD repeat and HMG-box D 99.9 1.6E-21 5.6E-26 97.0 5.9 53 1-53 11-64 (81)
9 3u2b_C Transcription factor SO 99.9 3E-21 1E-25 95.0 6.8 54 1-54 8-61 (79)
10 3f27_D Transcription factor SO 99.9 3.9E-21 1.3E-25 95.4 7.1 54 1-54 12-65 (83)
11 2cs1_A PMS1 protein homolog 1; 99.8 4.9E-21 1.7E-25 96.8 7.3 54 1-54 13-66 (92)
12 2e6o_A HMG box-containing prot 99.8 4.1E-21 1.4E-25 96.3 6.8 54 1-54 23-76 (87)
13 1i11_A Transcription factor SO 99.8 4.6E-21 1.6E-25 94.9 6.6 54 1-54 10-63 (81)
14 1ckt_A High mobility group 1 p 99.8 3.7E-21 1.3E-25 93.1 5.8 54 1-54 7-62 (71)
15 2crj_A SWI/SNF-related matrix- 99.8 9.4E-21 3.2E-25 95.8 7.2 54 1-54 13-66 (92)
16 1hme_A High mobility group pro 99.8 5.7E-21 1.9E-25 93.7 5.9 54 1-54 12-65 (77)
17 2co9_A Thymus high mobility gr 99.8 1.8E-20 6.2E-25 96.3 7.8 54 1-54 23-76 (102)
18 2eqz_A High mobility group pro 99.8 2.9E-20 9.9E-25 93.0 7.8 54 1-54 21-76 (86)
19 1k99_A Upstream binding factor 99.8 4.9E-21 1.7E-25 98.0 5.0 54 1-54 16-69 (99)
20 4euw_A Transcription factor SO 99.8 3.5E-20 1.2E-24 95.8 8.0 54 1-54 35-88 (106)
21 3nm9_A HMG-D, high mobility gr 99.8 2.1E-20 7.3E-25 91.0 5.9 52 1-54 9-60 (73)
22 1wxl_A Single-strand recogniti 99.8 5.3E-20 1.8E-24 89.6 7.0 52 1-54 9-60 (73)
23 1cg7_A Protein (NON histone pr 99.8 4.6E-21 1.6E-25 97.1 1.8 54 1-54 26-79 (93)
24 1aab_A High mobility group pro 99.8 2E-20 6.9E-25 92.9 3.3 54 1-54 13-68 (83)
25 1l8y_A Upstream binding factor 99.8 3.1E-19 1.1E-23 90.3 6.0 53 1-54 10-62 (91)
26 2gzk_A Sex-determining region 99.8 9.1E-19 3.1E-23 95.2 7.2 54 1-54 94-147 (159)
27 3fgh_A Transcription factor A, 99.8 1.3E-18 4.4E-23 83.4 5.2 50 1-54 8-57 (67)
28 2lhj_A High mobility group pro 99.8 2.4E-20 8.3E-25 95.0 -0.9 54 1-54 28-83 (97)
29 2yrq_A High mobility group pro 99.8 2.3E-18 7.9E-23 94.7 6.6 54 1-54 107-160 (173)
30 2yuk_A Myeloid/lymphoid or mix 99.8 4.9E-19 1.7E-23 89.5 3.1 50 1-54 28-79 (90)
31 2cto_A Novel protein; high mob 99.7 1E-18 3.5E-23 88.8 3.6 52 1-54 16-70 (93)
32 3tq6_A Transcription factor A, 99.7 6.8E-18 2.3E-22 95.7 7.2 54 1-54 15-68 (214)
33 1v63_A Nucleolar transcription 99.7 8E-18 2.7E-22 86.4 6.7 52 1-54 14-65 (101)
34 2yrq_A High mobility group pro 99.7 9.5E-18 3.2E-22 92.3 7.3 54 1-54 21-76 (173)
35 3tmm_A Transcription factor A, 99.7 1.2E-17 4E-22 96.0 7.2 54 1-54 47-100 (238)
36 1v64_A Nucleolar transcription 99.7 1.1E-17 3.9E-22 86.7 5.2 50 1-54 23-72 (108)
37 2gzk_A Sex-determining region 99.7 6.1E-17 2.1E-21 87.9 7.2 54 1-54 10-63 (159)
38 3tq6_A Transcription factor A, 99.6 9.8E-16 3.4E-20 86.9 2.1 50 1-54 120-169 (214)
39 3tmm_A Transcription factor A, 99.5 1.4E-15 4.8E-20 87.3 0.8 50 1-54 152-201 (238)
40 2qgu_A Probable signal peptide 94.0 0.049 1.7E-06 30.5 2.9 33 19-51 70-103 (211)
41 3o39_A Periplasmic protein rel 76.0 6 0.0002 20.0 4.2 27 25-51 79-105 (108)
42 1x2l_A CUT-like 2, homeobox pr 67.9 6.5 0.00022 19.7 2.9 32 19-50 45-78 (101)
43 1wh6_A CUT-like 2, homeobox pr 63.6 11 0.00037 18.9 3.2 32 19-50 45-78 (101)
44 2yua_A Williams-beuren syndrom 61.4 13 0.00043 18.0 4.1 40 8-47 36-81 (99)
45 3nm8_A Tyrosinase; TYPE3 coppe 61.4 7.4 0.00025 23.0 2.7 22 32-53 9-30 (303)
46 3itf_A Periplasmic adaptor pro 61.1 17 0.00057 19.3 4.2 27 25-51 107-133 (145)
47 1wh8_A CUT-like 2, homeobox pr 59.7 12 0.00041 19.1 3.0 32 19-50 55-88 (111)
48 2o37_A Protein SIS1; HSP40, J- 55.4 16 0.00055 17.3 3.8 40 8-47 27-69 (92)
49 2dn9_A DNAJ homolog subfamily 54.7 15 0.00051 16.8 2.8 39 8-46 26-70 (79)
50 1l6x_B Minimized B-domain of p 54.3 11 0.00038 15.2 2.4 17 35-51 16-32 (34)
51 2ctw_A DNAJ homolog subfamily 54.1 19 0.00064 17.7 3.5 39 8-46 36-80 (109)
52 2och_A Hypothetical protein DN 53.5 15 0.00052 16.5 3.2 39 8-46 27-68 (73)
53 2ctq_A DNAJ homolog subfamily 51.1 19 0.00066 17.7 3.0 41 8-48 39-85 (112)
54 3oeo_A Spheroplast protein Y; 49.3 22 0.00076 18.4 3.1 27 25-51 95-121 (138)
55 3awu_A Tyrosinase; tyrosinase, 48.4 16 0.00056 21.2 2.7 22 32-53 5-26 (281)
56 1v54_D Cytochrome C oxidase su 47.1 7.6 0.00026 20.8 1.1 13 33-45 47-59 (147)
57 3u65_B TP33 protein; tetratric 45.0 18 0.00061 21.2 2.5 21 32-52 235-255 (328)
58 2y69_D Cytochrome C oxidase su 44.5 8.7 0.0003 21.1 1.1 13 33-45 69-81 (169)
59 3v96_A Metalloproteinase inhib 44.1 6.1 0.00021 21.7 0.4 18 33-50 104-121 (184)
60 2xwv_A Sialic acid-binding per 43.8 28 0.00097 20.0 3.3 20 32-51 221-240 (312)
61 1hdj_A Human HSP40, HDJ-1; mol 43.5 24 0.00083 16.0 4.7 39 8-46 22-65 (77)
62 2dmx_A DNAJ homolog subfamily 42.8 27 0.00094 16.4 3.0 39 8-46 28-73 (92)
63 2cug_A Mkiaa0962 protein; DNAJ 42.5 27 0.00094 16.3 3.6 40 8-47 36-80 (88)
64 2ys8_A RAB-related GTP-binding 42.3 26 0.00088 16.6 2.5 34 8-41 46-83 (90)
65 1bq0_A DNAJ, HSP40; chaperone, 42.1 11 0.00039 18.3 1.2 36 8-43 22-62 (103)
66 3fxb_A Trap dicarboxylate tran 42.0 18 0.00063 21.0 2.3 20 32-51 232-251 (326)
67 2e2d_C TIMP-2, metalloproteina 39.5 10 0.00035 20.8 0.9 19 33-51 106-124 (180)
68 2ctr_A DNAJ homolog subfamily 39.4 23 0.00078 16.6 2.1 40 8-47 26-70 (88)
69 2ctp_A DNAJ homolog subfamily 38.6 30 0.001 15.6 3.4 39 8-46 26-69 (78)
70 4esu_A Ryanodine receptor 1; p 37.9 28 0.00094 19.5 2.5 18 34-51 64-81 (210)
71 2jtx_A Transcription initiatio 37.7 30 0.001 17.5 2.4 29 23-52 72-100 (106)
72 2pfz_A Putative exported prote 37.3 36 0.0012 19.4 3.0 20 32-51 215-234 (301)
73 2p3x_A Polyphenol oxidase, chl 36.9 31 0.001 20.6 2.7 24 30-53 47-70 (339)
74 1bt3_A Protein (catechol oxida 36.7 32 0.0011 20.6 2.8 24 30-53 48-71 (345)
75 3d0w_A YFLH protein; GRAM-posi 36.6 19 0.00067 18.2 1.6 19 27-45 75-93 (104)
76 3l6w_A Hemocyanin 1; cupredoxi 34.9 28 0.00097 22.2 2.4 23 31-53 4-26 (491)
77 1qbj_A Protein (double-strande 34.8 39 0.0013 15.8 2.7 16 16-31 20-38 (81)
78 3vpi_A Type VI secretion expor 34.0 49 0.0017 17.9 2.9 35 5-39 52-86 (174)
79 2lgw_A DNAJ homolog subfamily 33.8 44 0.0015 16.1 3.7 40 8-47 21-67 (99)
80 3bqs_A Uncharacterized protein 33.4 37 0.0013 16.5 2.3 40 12-51 41-84 (93)
81 2hpg_A ABC transporter, peripl 33.2 34 0.0011 19.9 2.4 20 32-51 236-255 (327)
82 4erv_A Ryanodine receptor 3; m 33.1 36 0.0012 19.0 2.4 18 34-51 64-81 (207)
83 1v65_A Riken cDNA 2610044O15; 32.6 32 0.0011 14.1 2.2 18 32-49 20-37 (64)
84 4f0w_A Effector TSE1, putative 32.3 53 0.0018 18.0 2.9 35 5-39 66-100 (188)
85 4etv_A Ryanodine receptor 2; p 32.1 38 0.0013 19.0 2.4 18 34-51 64-81 (209)
86 2w7n_A TRFB transcriptional re 32.0 18 0.00061 18.0 1.0 21 16-36 41-61 (101)
87 1wjt_A Transcription elongatio 31.9 51 0.0018 16.3 2.8 25 13-37 61-85 (103)
88 2ej7_A HCG3 gene; HCG3 protein 31.5 24 0.00082 16.1 1.4 39 8-46 28-73 (82)
89 1lnl_A Hemocyanin; deoxygenate 31.4 41 0.0014 20.4 2.7 21 33-53 9-29 (408)
90 2qsa_A DNAJ homolog DNJ-2; J-d 31.2 23 0.00077 17.3 1.3 41 8-48 35-84 (109)
91 1fpo_A HSC20, chaperone protei 31.0 21 0.00073 19.1 1.3 40 8-47 22-72 (171)
92 2ns0_A Hypothetical protein; r 30.8 51 0.0018 16.0 2.9 40 11-50 13-55 (85)
93 3mab_A Uncharacterized protein 30.7 52 0.0018 16.0 6.0 43 11-53 40-86 (93)
94 2l6l_A DNAJ homolog subfamily 29.5 64 0.0022 16.6 5.4 42 8-49 29-82 (155)
95 1zda_A Mini protein A domain, 29.4 14 0.00049 15.3 0.3 15 35-49 21-35 (38)
96 2pfy_A Putative exported prote 28.9 44 0.0015 18.9 2.4 20 32-51 216-235 (301)
97 1js8_A Hemocyanin; glycoprotei 27.8 53 0.0018 19.9 2.7 21 33-53 6-26 (394)
98 2vpn_A Periplasmic substrate b 27.6 48 0.0016 19.0 2.4 20 32-51 218-237 (316)
99 2atm_A Hyaluronoglucosaminidas 27.3 1.1E+02 0.0037 18.5 4.6 26 5-30 124-149 (331)
100 2cwy_A Hypothetical protein TT 26.3 63 0.0022 15.6 3.3 31 21-51 15-45 (94)
101 1fad_A Protein (FADD protein); 26.2 23 0.00077 17.0 0.8 16 23-38 17-32 (99)
102 1j1d_B Troponin T, TNT; THIN f 25.7 72 0.0025 16.0 4.4 34 19-52 40-73 (106)
103 3sjr_A Uncharacterized protein 25.7 90 0.0031 17.1 3.6 25 4-28 98-122 (175)
104 3cki_B Metalloproteinase inhib 25.3 19 0.00064 18.2 0.4 17 33-49 100-116 (121)
105 2hzl_A Trap-T family sorbitol/ 25.1 56 0.0019 19.1 2.4 20 32-51 252-271 (365)
106 2zzv_A ABC transporter, solute 24.7 58 0.002 19.0 2.4 21 31-51 258-278 (361)
107 3n37_A Ribonucleoside-diphosph 24.6 60 0.0021 19.0 2.5 16 33-48 44-59 (319)
108 1fcq_A Hyaluronoglucosaminidas 24.2 1.3E+02 0.0044 18.4 4.6 26 4-29 127-152 (350)
109 3apq_A DNAJ homolog subfamily 23.1 93 0.0032 16.4 3.6 40 8-47 21-66 (210)
110 3tqc_A Pantothenate kinase; bi 22.7 6.2 0.00021 23.3 -2.0 29 1-29 14-43 (321)
111 3dhz_A Ribonucleotide reductas 22.7 65 0.0022 19.0 2.4 16 33-48 54-69 (329)
112 2pe4_A Hyaluronidase-1; hyalur 22.3 1.5E+02 0.0052 18.6 4.6 27 4-30 126-152 (424)
113 1n4c_A Auxilin; four helix bun 22.1 36 0.0012 18.7 1.1 35 8-42 136-178 (182)
114 1faf_A Large T antigen; J doma 21.8 41 0.0014 15.5 1.2 34 8-41 32-66 (79)
115 3hyi_A Protein DUF199/WHIA; la 21.5 58 0.002 19.2 2.0 20 12-31 252-271 (295)
116 4dr0_A Ribonucleoside-diphosph 21.5 71 0.0024 19.1 2.4 16 33-48 64-79 (350)
117 3lay_A Zinc resistance-associa 21.2 93 0.0032 16.9 2.7 19 33-51 64-82 (175)
118 2ph0_A Uncharacterized protein 21.1 69 0.0024 17.3 2.1 21 11-31 5-25 (174)
119 4a58_A Ribonucleoside-diphosph 21.0 70 0.0024 18.9 2.3 16 33-48 60-75 (324)
120 1qgp_A Protein (double strande 21.0 68 0.0023 14.6 1.9 17 15-31 23-42 (77)
121 3bvo_A CO-chaperone protein HS 20.9 82 0.0028 17.4 2.5 39 8-46 64-113 (207)
122 3lns_A Benzaldehyde dehydrogen 20.9 1.5E+02 0.0053 18.1 5.2 37 14-50 18-60 (457)
123 2hq2_A Putative heme/hemoglobi 20.8 1E+02 0.0035 18.7 3.0 23 9-31 17-39 (354)
124 1j1d_C Troponin I, TNI; THIN f 20.8 1E+02 0.0036 16.1 3.1 33 20-52 57-89 (133)
125 1ytz_T Troponin T; muscle, THI 20.7 56 0.0019 16.4 1.6 33 20-52 41-73 (107)
126 2j0p_A HEMS, hemin transport p 20.5 95 0.0032 18.7 2.8 23 9-31 7-29 (345)
127 2guz_A Mitochondrial import in 20.4 41 0.0014 15.1 1.0 30 8-37 34-64 (71)
128 3olj_A Ribonucleoside-diphosph 20.3 54 0.0018 18.9 1.7 16 33-48 51-66 (286)
129 3mjo_A Ribonucleotide reductas 20.2 54 0.0019 19.0 1.7 16 33-48 53-68 (296)
130 2rcc_A Ribonucleoside-diphosph 20.0 74 0.0025 18.8 2.3 17 32-48 65-81 (346)
No 1
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.86 E-value=1.4e-21 Score=98.54 Aligned_cols=54 Identities=22% Similarity=0.410 Sum_probs=52.8
Q ss_pred ChHHhHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhh
Q psy5907 1 MPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKI 54 (56)
Q Consensus 1 ~ay~lf~~~~~~~~~~~~p~~~~~ei~k~l~~~W~~l~~~eK~~y~~~a~~~k~ 54 (56)
+|||+|++++|..++.+||++++.||+++||++|++||+++|.+|.++|+++++
T Consensus 26 say~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~ 79 (90)
T 1wgf_A 26 SAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKKKAKYKAREAALKA 79 (90)
T ss_dssp CHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999999987
No 2
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.86 E-value=2.9e-21 Score=96.57 Aligned_cols=54 Identities=22% Similarity=0.417 Sum_probs=52.5
Q ss_pred ChHHhHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhh
Q psy5907 1 MPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKI 54 (56)
Q Consensus 1 ~ay~lf~~~~~~~~~~~~p~~~~~ei~k~l~~~W~~l~~~eK~~y~~~a~~~k~ 54 (56)
+|||+|++++|..++.+||++++++|+++||++|++||+++|.+|.++|+.+++
T Consensus 8 naf~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~ 61 (86)
T 2lef_A 8 NAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKERQ 61 (86)
T ss_dssp CHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999876
No 3
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=99.86 E-value=1.9e-21 Score=93.95 Aligned_cols=54 Identities=26% Similarity=0.526 Sum_probs=52.4
Q ss_pred ChHHhHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhh
Q psy5907 1 MPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKI 54 (56)
Q Consensus 1 ~ay~lf~~~~~~~~~~~~p~~~~~ei~k~l~~~W~~l~~~eK~~y~~~a~~~k~ 54 (56)
+|||+|++++|..++.+||++++++|+++||++|++||+++|.+|.++|+.+++
T Consensus 8 ~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~ 61 (71)
T 4a3n_A 8 NAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRV 61 (71)
T ss_dssp CHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999876
No 4
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=99.86 E-value=4e-21 Score=95.91 Aligned_cols=54 Identities=20% Similarity=0.385 Sum_probs=52.4
Q ss_pred ChHHhHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhh
Q psy5907 1 MPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKI 54 (56)
Q Consensus 1 ~ay~lf~~~~~~~~~~~~p~~~~~ei~k~l~~~W~~l~~~eK~~y~~~a~~~k~ 54 (56)
+|||+|++++|..++.+||++++++|+++||++|++||+++|.+|.++|+++++
T Consensus 10 ~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~ 63 (85)
T 1j46_A 10 NAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQA 63 (85)
T ss_dssp CHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999876
No 5
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=99.85 E-value=3.9e-21 Score=94.92 Aligned_cols=54 Identities=22% Similarity=0.431 Sum_probs=52.4
Q ss_pred ChHHhHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhh
Q psy5907 1 MPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKI 54 (56)
Q Consensus 1 ~ay~lf~~~~~~~~~~~~p~~~~~ei~k~l~~~W~~l~~~eK~~y~~~a~~~k~ 54 (56)
+|||+|++++|..++.+||++++++|+++||++|++||+++|.+|.++|+.+++
T Consensus 8 ~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~ 61 (80)
T 1gt0_D 8 NAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRA 61 (80)
T ss_dssp CHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999876
No 6
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=99.85 E-value=2.1e-21 Score=95.04 Aligned_cols=54 Identities=20% Similarity=0.385 Sum_probs=52.4
Q ss_pred ChHHhHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhh
Q psy5907 1 MPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKI 54 (56)
Q Consensus 1 ~ay~lf~~~~~~~~~~~~p~~~~~ei~k~l~~~W~~l~~~eK~~y~~~a~~~k~ 54 (56)
+|||+|++++|..++.+||++++++|+++||++|++||+++|.+|.++|+.+++
T Consensus 10 ~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~ 63 (76)
T 1hry_A 10 NAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQA 63 (76)
T ss_dssp CHHHHHHHHHHHHHHHHCSCCSSSHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhHHHhCCHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999876
No 7
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=99.85 E-value=2.6e-21 Score=95.99 Aligned_cols=54 Identities=17% Similarity=0.301 Sum_probs=52.5
Q ss_pred ChHHhHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhh
Q psy5907 1 MPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKI 54 (56)
Q Consensus 1 ~ay~lf~~~~~~~~~~~~p~~~~~ei~k~l~~~W~~l~~~eK~~y~~~a~~~k~ 54 (56)
+|||+|++++|..++.+||++++.+|+++||++|++||+++|.+|.++|+++++
T Consensus 13 ~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~ 66 (82)
T 1wz6_A 13 NAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKEYKD 66 (82)
T ss_dssp CHHHHHHHHHHHHHHHHCSSSCTTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999886
No 8
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.6e-21 Score=96.98 Aligned_cols=53 Identities=13% Similarity=0.125 Sum_probs=51.0
Q ss_pred ChHHhHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q psy5907 1 MPYMRYSRKVWDQVKAQNLDLK-LWEIGKIIGQMWRDLPEDQKTEYVEDYEQEK 53 (56)
Q Consensus 1 ~ay~lf~~~~~~~~~~~~p~~~-~~ei~k~l~~~W~~l~~~eK~~y~~~a~~~k 53 (56)
+|||+|++++|..++.+||+++ ++||+++||++|++|++++|.+|+++|+.+.
T Consensus 11 say~lF~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~ls~eeK~~y~~~A~~d~ 64 (81)
T 2d7l_A 11 TGFQMWLEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEERKVWANKAKGET 64 (81)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCSHHHHHHHHHHHHSSSCHHHHHHHHHHTTSSS
T ss_pred CHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 6899999999999999999998 9999999999999999999999999998874
No 9
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=99.85 E-value=3e-21 Score=94.99 Aligned_cols=54 Identities=22% Similarity=0.446 Sum_probs=52.3
Q ss_pred ChHHhHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhh
Q psy5907 1 MPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKI 54 (56)
Q Consensus 1 ~ay~lf~~~~~~~~~~~~p~~~~~ei~k~l~~~W~~l~~~eK~~y~~~a~~~k~ 54 (56)
+|||+|++++|..++.+||++++++|+++||++|++||+++|.+|.++|+++++
T Consensus 8 naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~ 61 (79)
T 3u2b_C 8 NAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIPFIQEAERLRL 61 (79)
T ss_dssp CHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999875
No 10
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=99.85 E-value=3.9e-21 Score=95.37 Aligned_cols=54 Identities=26% Similarity=0.526 Sum_probs=52.3
Q ss_pred ChHHhHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhh
Q psy5907 1 MPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKI 54 (56)
Q Consensus 1 ~ay~lf~~~~~~~~~~~~p~~~~~ei~k~l~~~W~~l~~~eK~~y~~~a~~~k~ 54 (56)
+|||+|++++|..++.+||++++++|+++||++|++||+++|.+|.++|+++++
T Consensus 12 ~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~ 65 (83)
T 3f27_D 12 NAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRV 65 (83)
T ss_dssp CHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999999876
No 11
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=4.9e-21 Score=96.82 Aligned_cols=54 Identities=19% Similarity=0.261 Sum_probs=52.5
Q ss_pred ChHHhHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhh
Q psy5907 1 MPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKI 54 (56)
Q Consensus 1 ~ay~lf~~~~~~~~~~~~p~~~~~ei~k~l~~~W~~l~~~eK~~y~~~a~~~k~ 54 (56)
+|||+|++++|..++.+||++++.||+++||++|++||+++|.+|.++|+++|+
T Consensus 13 say~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~ 66 (92)
T 2cs1_A 13 SASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDLE 66 (92)
T ss_dssp CHHHHHHHHHHHHHHHHCCSSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTTH
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999999886
No 12
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=99.85 E-value=4.1e-21 Score=96.28 Aligned_cols=54 Identities=13% Similarity=0.266 Sum_probs=52.4
Q ss_pred ChHHhHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhh
Q psy5907 1 MPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKI 54 (56)
Q Consensus 1 ~ay~lf~~~~~~~~~~~~p~~~~~ei~k~l~~~W~~l~~~eK~~y~~~a~~~k~ 54 (56)
+|||+|++++|..++.+||++++.+|+++||++|++||+++|++|.++|+++++
T Consensus 23 ~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~ 76 (87)
T 2e6o_A 23 NAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEAKALAE 76 (87)
T ss_dssp CHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999999876
No 13
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.85 E-value=4.6e-21 Score=94.89 Aligned_cols=54 Identities=19% Similarity=0.358 Sum_probs=52.0
Q ss_pred ChHHhHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhh
Q psy5907 1 MPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKI 54 (56)
Q Consensus 1 ~ay~lf~~~~~~~~~~~~p~~~~~ei~k~l~~~W~~l~~~eK~~y~~~a~~~k~ 54 (56)
+|||+|+++++..++.+||++++.+|+++||++|++||+++|.+|.++|++++.
T Consensus 10 naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~ 63 (81)
T 1i11_A 10 NAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSK 63 (81)
T ss_dssp CHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHTTSCSGGGHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999998875
No 14
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=99.84 E-value=3.7e-21 Score=93.09 Aligned_cols=54 Identities=15% Similarity=0.326 Sum_probs=51.6
Q ss_pred ChHHhHHHHHHHHHHHhCCCCCH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhh
Q psy5907 1 MPYMRYSRKVWDQVKAQNLDLKL--WEIGKIIGQMWRDLPEDQKTEYVEDYEQEKI 54 (56)
Q Consensus 1 ~ay~lf~~~~~~~~~~~~p~~~~--~ei~k~l~~~W~~l~~~eK~~y~~~a~~~k~ 54 (56)
+||++|++++|..++.+||+++. +||+++||++|++||+++|.+|.++|+++|+
T Consensus 7 say~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~ 62 (71)
T 1ckt_A 7 SSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKA 62 (71)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Confidence 68999999999999999999864 9999999999999999999999999999886
No 15
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=99.84 E-value=9.4e-21 Score=95.77 Aligned_cols=54 Identities=30% Similarity=0.588 Sum_probs=52.4
Q ss_pred ChHHhHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhh
Q psy5907 1 MPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKI 54 (56)
Q Consensus 1 ~ay~lf~~~~~~~~~~~~p~~~~~ei~k~l~~~W~~l~~~eK~~y~~~a~~~k~ 54 (56)
+|||+|++++|..++.+||++++.+|+++||++|++||+++|.+|.++|+++++
T Consensus 13 ~af~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~ 66 (92)
T 2crj_A 13 TGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQ 66 (92)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999876
No 16
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=99.84 E-value=5.7e-21 Score=93.68 Aligned_cols=54 Identities=19% Similarity=0.430 Sum_probs=52.4
Q ss_pred ChHHhHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhh
Q psy5907 1 MPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKI 54 (56)
Q Consensus 1 ~ay~lf~~~~~~~~~~~~p~~~~~ei~k~l~~~W~~l~~~eK~~y~~~a~~~k~ 54 (56)
+|||+|++++|..++.+||++++++|+++||++|+.||+++|.+|.++|++++.
T Consensus 12 saf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~ 65 (77)
T 1hme_A 12 SAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKE 65 (77)
T ss_dssp CTTHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHSCGGGSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999886
No 17
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.84 E-value=1.8e-20 Score=96.26 Aligned_cols=54 Identities=31% Similarity=0.481 Sum_probs=52.4
Q ss_pred ChHHhHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhh
Q psy5907 1 MPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKI 54 (56)
Q Consensus 1 ~ay~lf~~~~~~~~~~~~p~~~~~ei~k~l~~~W~~l~~~eK~~y~~~a~~~k~ 54 (56)
+|||+|++++|..++.+||++++.+|+++||++|++||+++|.+|.++|+++++
T Consensus 23 say~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~ 76 (102)
T 2co9_A 23 SAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQKQVYKKKTEAAKK 76 (102)
T ss_dssp CHHHHTHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999999886
No 18
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=2.9e-20 Score=92.95 Aligned_cols=54 Identities=17% Similarity=0.377 Sum_probs=51.7
Q ss_pred ChHHhHHHHHHHHHHHhCCCCC--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhh
Q psy5907 1 MPYMRYSRKVWDQVKAQNLDLK--LWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKI 54 (56)
Q Consensus 1 ~ay~lf~~~~~~~~~~~~p~~~--~~ei~k~l~~~W~~l~~~eK~~y~~~a~~~k~ 54 (56)
+|||+|++++|..++.+||+++ +.||+++||++|++||+++|.+|.++|+++++
T Consensus 21 say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~ 76 (86)
T 2eqz_A 21 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKV 76 (86)
T ss_dssp CHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 6899999999999999999986 69999999999999999999999999999886
No 19
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=99.83 E-value=4.9e-21 Score=98.03 Aligned_cols=54 Identities=24% Similarity=0.581 Sum_probs=52.5
Q ss_pred ChHHhHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhh
Q psy5907 1 MPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKI 54 (56)
Q Consensus 1 ~ay~lf~~~~~~~~~~~~p~~~~~ei~k~l~~~W~~l~~~eK~~y~~~a~~~k~ 54 (56)
+|||+||++.|..++.+||+++++||+++||++|++||+++|.+|.++|+++++
T Consensus 16 saf~lF~~~~r~~ik~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~ 69 (99)
T 1k99_A 16 TPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQ 69 (99)
T ss_dssp CHHHHHHHHHHHHHHTTCTTSCSHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999876
No 20
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=99.83 E-value=3.5e-20 Score=95.80 Aligned_cols=54 Identities=26% Similarity=0.495 Sum_probs=52.4
Q ss_pred ChHHhHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhh
Q psy5907 1 MPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKI 54 (56)
Q Consensus 1 ~ay~lf~~~~~~~~~~~~p~~~~~ei~k~l~~~W~~l~~~eK~~y~~~a~~~k~ 54 (56)
+|||+|++++|..++.++|++++.+|+++||++|+.||+++|.+|.++|+++|+
T Consensus 35 naf~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~ 88 (106)
T 4euw_A 35 NAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESEKRPFVEEAERLRV 88 (106)
T ss_dssp CHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999999886
No 21
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=99.82 E-value=2.1e-20 Score=91.00 Aligned_cols=52 Identities=23% Similarity=0.442 Sum_probs=50.2
Q ss_pred ChHHhHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhh
Q psy5907 1 MPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKI 54 (56)
Q Consensus 1 ~ay~lf~~~~~~~~~~~~p~~~~~ei~k~l~~~W~~l~~~eK~~y~~~a~~~k~ 54 (56)
+|||+||+++|..++.+||+++++||+++||++|++||+ |.+|.++|+++++
T Consensus 9 say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~--K~~y~~~A~~~k~ 60 (73)
T 3nm9_A 9 SAYALWLNSARESIKRENPGIKVTEVAKRGGELWRAMKD--KSEWEAKAAKAKD 60 (73)
T ss_dssp CHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCc--hHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999998 9999999999886
No 22
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=99.82 E-value=5.3e-20 Score=89.60 Aligned_cols=52 Identities=25% Similarity=0.516 Sum_probs=50.3
Q ss_pred ChHHhHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhh
Q psy5907 1 MPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKI 54 (56)
Q Consensus 1 ~ay~lf~~~~~~~~~~~~p~~~~~ei~k~l~~~W~~l~~~eK~~y~~~a~~~k~ 54 (56)
+|||+|++++|..++.+||+++++||+++||++|++| ++|.+|.++|+++|+
T Consensus 9 say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l--~eK~~y~~~A~~~k~ 60 (73)
T 1wxl_A 9 TAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKEL--KDKSKWEDAAAKDKQ 60 (73)
T ss_dssp CHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTC--TTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhh--HhhHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999 889999999999886
No 23
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=99.81 E-value=4.6e-21 Score=97.12 Aligned_cols=54 Identities=26% Similarity=0.553 Sum_probs=52.4
Q ss_pred ChHHhHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhh
Q psy5907 1 MPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKI 54 (56)
Q Consensus 1 ~ay~lf~~~~~~~~~~~~p~~~~~ei~k~l~~~W~~l~~~eK~~y~~~a~~~k~ 54 (56)
+|||+|++++|..++.+||++++.||+++||++|++||+++|.+|.++|+++++
T Consensus 26 saf~lF~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~ 79 (93)
T 1cg7_A 26 SAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALTPEEKQPYEAKAQADKK 79 (93)
T ss_dssp CHHHHHHHHHTSTTTTTCTTSCHHHHTTTHHHHHHTTHHHHHHHHHHHHTTHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999886
No 24
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=99.80 E-value=2e-20 Score=92.90 Aligned_cols=54 Identities=15% Similarity=0.321 Sum_probs=51.6
Q ss_pred ChHHhHHHHHHHHHHHhCCCCC--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhh
Q psy5907 1 MPYMRYSRKVWDQVKAQNLDLK--LWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKI 54 (56)
Q Consensus 1 ~ay~lf~~~~~~~~~~~~p~~~--~~ei~k~l~~~W~~l~~~eK~~y~~~a~~~k~ 54 (56)
+|||+|++++|..++.+||+++ ++||+++||++|++||+++|.+|.++|+++++
T Consensus 13 say~lF~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~ 68 (83)
T 1aab_A 13 SSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKA 68 (83)
T ss_dssp CHHHHHHHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSCTTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 6899999999999999999987 59999999999999999999999999999886
No 25
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=99.79 E-value=3.1e-19 Score=90.34 Aligned_cols=53 Identities=9% Similarity=0.157 Sum_probs=51.3
Q ss_pred ChHHhHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhh
Q psy5907 1 MPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKI 54 (56)
Q Consensus 1 ~ay~lf~~~~~~~~~~~~p~~~~~ei~k~l~~~W~~l~~~eK~~y~~~a~~~k~ 54 (56)
+||++|+++.|..++.++|+ ++++|++.||++|++|++++|.+|+++|+.+|+
T Consensus 10 SAy~lf~~~~r~~~k~~~p~-~~~evsK~lGe~Wk~ls~~eK~pye~kA~~dK~ 62 (91)
T 1l8y_A 10 RAEEIWQQSVIGDYLARFKN-DRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQK 62 (91)
T ss_dssp HHHHHHHHHHHHHHHHHTTS-THHHHHHHHHHHHHTTGGGHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 58999999999999999999 999999999999999999999999999999986
No 26
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.78 E-value=9.1e-19 Score=95.18 Aligned_cols=54 Identities=19% Similarity=0.430 Sum_probs=52.4
Q ss_pred ChHHhHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhh
Q psy5907 1 MPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKI 54 (56)
Q Consensus 1 ~ay~lf~~~~~~~~~~~~p~~~~~ei~k~l~~~W~~l~~~eK~~y~~~a~~~k~ 54 (56)
+||++||+++|..++.+||++++++|+++||++|++||+++|++|.++|+++++
T Consensus 94 say~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~ 147 (159)
T 2gzk_A 94 SAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKE 147 (159)
T ss_dssp CHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred cccchhhHhhHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999886
No 27
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=99.76 E-value=1.3e-18 Score=83.43 Aligned_cols=50 Identities=18% Similarity=0.412 Sum_probs=46.4
Q ss_pred ChHHhHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhh
Q psy5907 1 MPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKI 54 (56)
Q Consensus 1 ~ay~lf~~~~~~~~~~~~p~~~~~ei~k~l~~~W~~l~~~eK~~y~~~a~~~k~ 54 (56)
+||++|++++|..++..|| ++|++.||++|++||+++|.+|.++|+++|+
T Consensus 8 say~~F~~~~r~~~k~~~p----~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~ 57 (67)
T 3fgh_A 8 SAYNVYVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDET 57 (67)
T ss_dssp CHHHHHHHHHHHHHCSSSH----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Confidence 6899999999999976655 7999999999999999999999999999886
No 28
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=99.76 E-value=2.4e-20 Score=95.00 Aligned_cols=54 Identities=24% Similarity=0.570 Sum_probs=52.2
Q ss_pred ChHHhHHHHHHHHHHHhCCCCC--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhh
Q psy5907 1 MPYMRYSRKVWDQVKAQNLDLK--LWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKI 54 (56)
Q Consensus 1 ~ay~lf~~~~~~~~~~~~p~~~--~~ei~k~l~~~W~~l~~~eK~~y~~~a~~~k~ 54 (56)
+|||+|++++|..++.+||+++ +.+|+++||++|++||+++|.+|.++|+++++
T Consensus 28 say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~ 83 (97)
T 2lhj_A 28 SSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALSDEEKKPYERMSDEDRV 83 (97)
T ss_dssp CSSTHHHHGGGGGHHHHCTTSTTCSSHHHHHHHHTSSSSCSTTTSSSSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999 99999999999999999999999999999886
No 29
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=2.3e-18 Score=94.74 Aligned_cols=54 Identities=19% Similarity=0.430 Sum_probs=52.4
Q ss_pred ChHHhHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhh
Q psy5907 1 MPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKI 54 (56)
Q Consensus 1 ~ay~lf~~~~~~~~~~~~p~~~~~ei~k~l~~~W~~l~~~eK~~y~~~a~~~k~ 54 (56)
+|||+||+++|..++.+||++++.+|+++||++|++||+++|.+|.++|+.+++
T Consensus 107 saf~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~ 160 (173)
T 2yrq_A 107 SAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKE 160 (173)
T ss_dssp CHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999886
No 30
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.75 E-value=4.9e-19 Score=89.48 Aligned_cols=50 Identities=16% Similarity=0.407 Sum_probs=48.1
Q ss_pred ChHHhHHHHHHHHHHHhCCCCC--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhh
Q psy5907 1 MPYMRYSRKVWDQVKAQNLDLK--LWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKI 54 (56)
Q Consensus 1 ~ay~lf~~~~~~~~~~~~p~~~--~~ei~k~l~~~W~~l~~~eK~~y~~~a~~~k~ 54 (56)
+|||+||+++|..|+.+||+++ ++||+ ++|+.|++++|.+|+++|+.+|+
T Consensus 28 sAf~lf~~e~R~kik~enP~~s~~~~eIs----e~Wk~ls~eeK~pY~~kA~~~K~ 79 (90)
T 2yuk_A 28 VAPVLYTNINFPNLKEEFPDWTTRVKQIA----KLWRKASSQERAPYVQKARDNRA 79 (90)
T ss_dssp SSHHHHHHHHCTTHHHHCCSHHHHHHHHH----HHHHHSCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhHHHHHHHCcCccchHHHHH----HHHHcCCHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999 99998 99999999999999999999886
No 31
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1e-18 Score=88.76 Aligned_cols=52 Identities=17% Similarity=0.323 Sum_probs=49.8
Q ss_pred ChHHhHHHHHHHHHHHhCCCCCHHHHHHHH---HHHhcCCCHHHHHHHHHHHHHhhh
Q psy5907 1 MPYMRYSRKVWDQVKAQNLDLKLWEIGKII---GQMWRDLPEDQKTEYVEDYEQEKI 54 (56)
Q Consensus 1 ~ay~lf~~~~~~~~~~~~p~~~~~ei~k~l---~~~W~~l~~~eK~~y~~~a~~~k~ 54 (56)
+|||+|++++|..++.+ +++++||+++| |++|++|++++|.+|+++|+++|+
T Consensus 16 sAf~lF~~e~R~~ik~e--~~~~~eisK~l~~cGe~Wk~ls~eEK~pYe~~A~~~K~ 70 (93)
T 2cto_A 16 NAYYFFVQEKIPELRRR--GLPVARVADAIPYCSSDWALLREEEKEKYAEMAREWRA 70 (93)
T ss_dssp CHHHHHHHTTHHHHHHH--TCCCSSHHHHTGGGHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 68999999999999988 89999999999 999999999999999999999886
No 32
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.74 E-value=6.8e-18 Score=95.71 Aligned_cols=54 Identities=37% Similarity=0.578 Sum_probs=52.4
Q ss_pred ChHHhHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhh
Q psy5907 1 MPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKI 54 (56)
Q Consensus 1 ~ay~lf~~~~~~~~~~~~p~~~~~ei~k~l~~~W~~l~~~eK~~y~~~a~~~k~ 54 (56)
+||++|++++|..++.+||+++++||+++||++|++||+++|.+|+++|+.+++
T Consensus 15 say~lF~~~~r~~~k~~~P~~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~ 68 (214)
T 3tq6_A 15 SSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQ 68 (214)
T ss_dssp CHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHccCHHhhhHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999876
No 33
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.74 E-value=8e-18 Score=86.36 Aligned_cols=52 Identities=23% Similarity=0.355 Sum_probs=46.2
Q ss_pred ChHHhHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhh
Q psy5907 1 MPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKI 54 (56)
Q Consensus 1 ~ay~lf~~~~~~~~~~~~p~~~~~ei~k~l~~~W~~l~~~eK~~y~~~a~~~k~ 54 (56)
+||++||++++. ..++|++++.||++.||++|+.|++++|.+|+++|+++|+
T Consensus 14 say~lF~~e~~~--~p~~~~~~~~eisK~lge~Wk~ls~~eK~~Y~~~A~~~k~ 65 (101)
T 1v63_A 14 NGYQKFSQELLS--NGELNHLPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQR 65 (101)
T ss_dssp SSHHHHHHHHHH--HCTTTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHh--CCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 589999999964 3345668899999999999999999999999999999886
No 34
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=9.5e-18 Score=92.27 Aligned_cols=54 Identities=15% Similarity=0.350 Sum_probs=51.9
Q ss_pred ChHHhHHHHHHHHHHHhCCC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhh
Q psy5907 1 MPYMRYSRKVWDQVKAQNLD--LKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKI 54 (56)
Q Consensus 1 ~ay~lf~~~~~~~~~~~~p~--~~~~ei~k~l~~~W~~l~~~eK~~y~~~a~~~k~ 54 (56)
+||++|++++|..++.+||+ +++.||+++||++|++||+++|.+|.++|+.+++
T Consensus 21 say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~ 76 (173)
T 2yrq_A 21 SSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKA 76 (173)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 68999999999999999999 6899999999999999999999999999999876
No 35
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.73 E-value=1.2e-17 Score=95.97 Aligned_cols=54 Identities=37% Similarity=0.578 Sum_probs=52.4
Q ss_pred ChHHhHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhh
Q psy5907 1 MPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKI 54 (56)
Q Consensus 1 ~ay~lf~~~~~~~~~~~~p~~~~~ei~k~l~~~W~~l~~~eK~~y~~~a~~~k~ 54 (56)
+||++|++++|..++.+||+++++||+++||++|+.|++++|.+|+++|+.+++
T Consensus 47 say~lF~~e~r~~~k~~~P~~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~ 100 (238)
T 3tmm_A 47 SSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQ 100 (238)
T ss_dssp CHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999876
No 36
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.71 E-value=1.1e-17 Score=86.66 Aligned_cols=50 Identities=24% Similarity=0.375 Sum_probs=47.4
Q ss_pred ChHHhHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhh
Q psy5907 1 MPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKI 54 (56)
Q Consensus 1 ~ay~lf~~~~~~~~~~~~p~~~~~ei~k~l~~~W~~l~~~eK~~y~~~a~~~k~ 54 (56)
+||++||+++|..++ ++++.||++.||++|++||+++|.+|.++|+.+++
T Consensus 23 say~lF~~e~r~~~k----~~~~~eisk~lg~~Wk~Ls~~eK~~Y~~~A~~~k~ 72 (108)
T 1v64_A 23 NSYSLYCAELMANMK----DVPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKK 72 (108)
T ss_dssp SHHHHHHHHHHHHCT----TSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 689999999999876 89999999999999999999999999999999886
No 37
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.70 E-value=6.1e-17 Score=87.94 Aligned_cols=54 Identities=20% Similarity=0.385 Sum_probs=51.9
Q ss_pred ChHHhHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhh
Q psy5907 1 MPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKI 54 (56)
Q Consensus 1 ~ay~lf~~~~~~~~~~~~p~~~~~ei~k~l~~~W~~l~~~eK~~y~~~a~~~k~ 54 (56)
+|||+|+++.+..+..+||+++++||+++||++|++||+++|.+|.++|+.+++
T Consensus 10 ~af~~~~~~~~~ki~~~~P~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~ 63 (159)
T 2gzk_A 10 NAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQA 63 (159)
T ss_dssp CHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhhHHHhccHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999999875
No 38
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.56 E-value=9.8e-16 Score=86.85 Aligned_cols=50 Identities=18% Similarity=0.407 Sum_probs=45.1
Q ss_pred ChHHhHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhh
Q psy5907 1 MPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKI 54 (56)
Q Consensus 1 ~ay~lf~~~~~~~~~~~~p~~~~~ei~k~l~~~W~~l~~~eK~~y~~~a~~~k~ 54 (56)
+||++||++.|..++.. ++.+|++.||++|++||+++|.+|.+.|+++++
T Consensus 120 say~lF~~e~r~~~k~~----~p~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~ 169 (214)
T 3tq6_A 120 SAYNVYVAERFQEAKGD----SPQEKLKTVKENWKNLSDSEKELYIQHAKEDET 169 (214)
T ss_dssp CHHHHHHHHHTTTSSCS----SHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHhhccC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 68999999999887654 455999999999999999999999999999886
No 39
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.52 E-value=1.4e-15 Score=87.32 Aligned_cols=50 Identities=18% Similarity=0.412 Sum_probs=45.1
Q ss_pred ChHHhHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhh
Q psy5907 1 MPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKI 54 (56)
Q Consensus 1 ~ay~lf~~~~~~~~~~~~p~~~~~ei~k~l~~~W~~l~~~eK~~y~~~a~~~k~ 54 (56)
+||++||+++|..++..+ +.+|++.||++|++|++++|.+|.++|+++++
T Consensus 152 say~lF~~e~r~~~k~~~----p~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~ 201 (238)
T 3tmm_A 152 SAYNVYVAERFQEAKGDS----PQEKLKTVKENWKNLSDSEKELYIQHAKEDET 201 (238)
T ss_dssp CHHHHHHHHHTTTSCCSS----HHHHHHHHHHHHHTCCTTTTHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 689999999998876544 45999999999999999999999999999886
No 40
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=93.95 E-value=0.049 Score=30.53 Aligned_cols=33 Identities=12% Similarity=0.411 Sum_probs=28.3
Q ss_pred CCCCHHHHHHH-HHHHhcCCCHHHHHHHHHHHHH
Q psy5907 19 LDLKLWEIGKI-IGQMWRDLPEDQKTEYVEDYEQ 51 (56)
Q Consensus 19 p~~~~~ei~k~-l~~~W~~l~~~eK~~y~~~a~~ 51 (56)
|...+..+++. +|..|+.+|+++++.|.+....
T Consensus 70 p~~D~~~~a~~vLG~~wr~at~~Qr~~F~~~F~~ 103 (211)
T 2qgu_A 70 PRADFKRTTQIAMGRFWSQATPEQQQQIQDGFKS 103 (211)
T ss_dssp GGBCHHHHHHHHHGGGTTTSCHHHHHHHHHHHHH
T ss_pred hhcCHHHHHHHHHhHhHhhCCHHHHHHHHHHHHH
Confidence 67788888866 6999999999999999987765
No 41
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=76.04 E-value=6 Score=20.00 Aligned_cols=27 Identities=15% Similarity=0.338 Sum_probs=22.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHH
Q psy5907 25 EIGKIIGQMWRDLPEDQKTEYVEDYEQ 51 (56)
Q Consensus 25 ei~k~l~~~W~~l~~~eK~~y~~~a~~ 51 (56)
+..++-..+..-|+|++|..|.+..++
T Consensus 79 ~~~r~~~qmy~lLTPEQk~q~~~~~~~ 105 (108)
T 3o39_A 79 AHMETQNKIYNILTPEQKKQFNANFEK 105 (108)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 445666788999999999999987764
No 42
>1x2l_A CUT-like 2, homeobox protein CUX-2; CUT domain, human homeobox protein CUX-2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=67.93 E-value=6.5 Score=19.74 Aligned_cols=32 Identities=22% Similarity=0.455 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHHH--HHhcCCCHHHHHHHHHHHH
Q psy5907 19 LDLKLWEIGKIIG--QMWRDLPEDQKTEYVEDYE 50 (56)
Q Consensus 19 p~~~~~ei~k~l~--~~W~~l~~~eK~~y~~~a~ 50 (56)
-+.+..-++.+|. .-|..|+...|+.|..++.
T Consensus 45 LgrsQgtlS~lL~~PkpW~~L~~~Gre~yiRM~n 78 (101)
T 1x2l_A 45 LGLSQGSVSEILARPKPWRKLTVKGKEPFIKMKQ 78 (101)
T ss_dssp TCSCHHHHHHHHHCCCCGGGCCHHHHHHHHHHHH
T ss_pred HccccchHHHHhcCCCCHHHHhHhhhHHHHHHHH
Confidence 4677788888888 6899999999999998764
No 43
>1wh6_A CUT-like 2, homeobox protein CUX-2; CUT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=63.58 E-value=11 Score=18.90 Aligned_cols=32 Identities=13% Similarity=0.362 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHHH--HHhcCCCHHHHHHHHHHHH
Q psy5907 19 LDLKLWEIGKIIG--QMWRDLPEDQKTEYVEDYE 50 (56)
Q Consensus 19 p~~~~~ei~k~l~--~~W~~l~~~eK~~y~~~a~ 50 (56)
=+.+..-++.+|. .-|+.|+...|..|..++.
T Consensus 45 LgrsqgtlSdlL~~PKpW~~L~~~Gre~fiRM~n 78 (101)
T 1wh6_A 45 LGLSQGSVSDMLSRPKPWSKLTQKGREPFIRMQL 78 (101)
T ss_dssp TCCCHHHHHHHHHSCCCTTTCCHHHHHHHHHHHH
T ss_pred HccCcCcHHHHhcCCCCHHHHhHHhHHHHHHHHH
Confidence 3667777888888 6799999999999998764
No 44
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.38 E-value=13 Score=17.99 Aligned_cols=40 Identities=18% Similarity=0.054 Sum_probs=28.3
Q ss_pred HHHHHHHHHhCCCCC-----HHHHHHHHHHHhcCCCHHH-HHHHHH
Q psy5907 8 RKVWDQVKAQNLDLK-----LWEIGKIIGQMWRDLPEDQ-KTEYVE 47 (56)
Q Consensus 8 ~~~~~~~~~~~p~~~-----~~ei~k~l~~~W~~l~~~e-K~~y~~ 47 (56)
+.++..++.-||+.. ..+.-+.|.+.|..|++.. |..|..
T Consensus 36 ~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~ 81 (99)
T 2yua_A 36 AAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDR 81 (99)
T ss_dssp HHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 456667777789876 3677888999999887554 445543
No 45
>3nm8_A Tyrosinase; TYPE3 copper proteins, oxidoreductase; 2.00A {Bacillus megaterium} PDB: 3npy_A 3nq0_A 3nq1_A* 3ntm_A 4d87_A* 3nq5_A
Probab=61.37 E-value=7.4 Score=23.00 Aligned_cols=22 Identities=18% Similarity=0.193 Sum_probs=18.1
Q ss_pred HHhcCCCHHHHHHHHHHHHHhh
Q psy5907 32 QMWRDLPEDQKTEYVEDYEQEK 53 (56)
Q Consensus 32 ~~W~~l~~~eK~~y~~~a~~~k 53 (56)
..|+.||.+||..|.+.....+
T Consensus 9 ke~~~Ls~~Er~~yi~Av~~l~ 30 (303)
T 3nm8_A 9 KNVLHLTDTEKRDFVRTVLILK 30 (303)
T ss_dssp CBGGGCCHHHHHHHHHHHHHHH
T ss_pred cchHHCCHHHHHHHHHHHHHHH
Confidence 4599999999999998776654
No 46
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=61.09 E-value=17 Score=19.28 Aligned_cols=27 Identities=33% Similarity=0.445 Sum_probs=21.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHH
Q psy5907 25 EIGKIIGQMWRDLPEDQKTEYVEDYEQ 51 (56)
Q Consensus 25 ei~k~l~~~W~~l~~~eK~~y~~~a~~ 51 (56)
+..+.-.+.+.-|++++|..+.+..++
T Consensus 107 ~r~k~~~qiy~vLTPEQk~ql~e~~~~ 133 (145)
T 3itf_A 107 EMAKVRNQMYRLLTPEQQAVLNEKHQQ 133 (145)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 334555688999999999999987765
No 47
>1wh8_A CUT-like 2, homeobox protein CUX-2; CUT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=59.66 E-value=12 Score=19.09 Aligned_cols=32 Identities=16% Similarity=0.333 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHHH--HHhcCCCHHHHHHHHHHHH
Q psy5907 19 LDLKLWEIGKIIG--QMWRDLPEDQKTEYVEDYE 50 (56)
Q Consensus 19 p~~~~~ei~k~l~--~~W~~l~~~eK~~y~~~a~ 50 (56)
=+.+..-++.+|. .-|..|+...|+.|..++.
T Consensus 55 LgrsQgtlSdlL~~PkpW~~L~~~GRe~yiRM~n 88 (111)
T 1wh8_A 55 LGLTQGSVSDLLSRPKPWHKLSLKGREPFVRMQL 88 (111)
T ss_dssp TCCCHHHHHHHHHSCCCTTTSCHHHHHHHHHHHH
T ss_pred hccCcCcHHHHHcCCCCHHHHhHhhhHHHHHHHH
Confidence 4677777888887 6799999888999998763
No 48
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=55.41 E-value=16 Score=17.34 Aligned_cols=40 Identities=18% Similarity=0.046 Sum_probs=27.9
Q ss_pred HHHHHHHHHhCCCCC--HHHHHHHHHHHhcCCCHHH-HHHHHH
Q psy5907 8 RKVWDQVKAQNLDLK--LWEIGKIIGQMWRDLPEDQ-KTEYVE 47 (56)
Q Consensus 8 ~~~~~~~~~~~p~~~--~~ei~k~l~~~W~~l~~~e-K~~y~~ 47 (56)
+..+...+.-||+.. ..+.-+.|.+.|..|+... |..|..
T Consensus 27 ~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~ 69 (92)
T 2o37_A 27 KGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYDQ 69 (92)
T ss_dssp HHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred HHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 456667777789864 4677788999998777655 445543
No 49
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.70 E-value=15 Score=16.77 Aligned_cols=39 Identities=13% Similarity=0.185 Sum_probs=26.2
Q ss_pred HHHHHHHHHhCCCCCH-----HHHHHHHHHHhcCCCHHH-HHHHH
Q psy5907 8 RKVWDQVKAQNLDLKL-----WEIGKIIGQMWRDLPEDQ-KTEYV 46 (56)
Q Consensus 8 ~~~~~~~~~~~p~~~~-----~ei~k~l~~~W~~l~~~e-K~~y~ 46 (56)
+..+...+.-||+... .+.-+.|.+.|..|+... |..|.
T Consensus 26 ~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD 70 (79)
T 2dn9_A 26 KAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYD 70 (79)
T ss_dssp HHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred HHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 4556666777887543 577788999998776544 44444
No 50
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=54.31 E-value=11 Score=15.23 Aligned_cols=17 Identities=18% Similarity=0.391 Sum_probs=12.5
Q ss_pred cCCCHHHHHHHHHHHHH
Q psy5907 35 RDLPEDQKTEYVEDYEQ 51 (56)
Q Consensus 35 ~~l~~~eK~~y~~~a~~ 51 (56)
.+|++++|.-|.+.-++
T Consensus 16 ~nLtEeQrn~yI~slkd 32 (34)
T 1l6x_B 16 PNLNEEQRNAKIKSIRD 32 (34)
T ss_dssp TTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHhHHHHHhc
Confidence 46888888888876544
No 51
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=54.11 E-value=19 Score=17.73 Aligned_cols=39 Identities=13% Similarity=-0.012 Sum_probs=27.1
Q ss_pred HHHHHHHHHhCCCCCH-----HHHHHHHHHHhcCCCHHH-HHHHH
Q psy5907 8 RKVWDQVKAQNLDLKL-----WEIGKIIGQMWRDLPEDQ-KTEYV 46 (56)
Q Consensus 8 ~~~~~~~~~~~p~~~~-----~ei~k~l~~~W~~l~~~e-K~~y~ 46 (56)
+..+...+.-||+... .+.-+.|.+.|..|+... |..|.
T Consensus 36 ~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD 80 (109)
T 2ctw_A 36 KSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYD 80 (109)
T ss_dssp HHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 4556677777898753 567788999998776554 44554
No 52
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=53.47 E-value=15 Score=16.52 Aligned_cols=39 Identities=18% Similarity=0.109 Sum_probs=26.6
Q ss_pred HHHHHHHHHhCCCCCH--HHHHHHHHHHhcCCCHHH-HHHHH
Q psy5907 8 RKVWDQVKAQNLDLKL--WEIGKIIGQMWRDLPEDQ-KTEYV 46 (56)
Q Consensus 8 ~~~~~~~~~~~p~~~~--~ei~k~l~~~W~~l~~~e-K~~y~ 46 (56)
+..+...+.-||+... .+.-+.|.+.|..|+... |..|.
T Consensus 27 ~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD 68 (73)
T 2och_A 27 KAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIYD 68 (73)
T ss_dssp HHHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 4456666777887653 477788999998777554 44554
No 53
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.14 E-value=19 Score=17.73 Aligned_cols=41 Identities=10% Similarity=-0.040 Sum_probs=28.5
Q ss_pred HHHHHHHHHhCCCCCH-----HHHHHHHHHHhcCCCHHH-HHHHHHH
Q psy5907 8 RKVWDQVKAQNLDLKL-----WEIGKIIGQMWRDLPEDQ-KTEYVED 48 (56)
Q Consensus 8 ~~~~~~~~~~~p~~~~-----~ei~k~l~~~W~~l~~~e-K~~y~~~ 48 (56)
+..+...+.-||+... .+.-+.|.+.|..|++.. |..|...
T Consensus 39 ~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~ 85 (112)
T 2ctq_A 39 AEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHW 85 (112)
T ss_dssp HHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHh
Confidence 4556666777887653 677889999999886554 5566543
No 54
>3oeo_A Spheroplast protein Y; LTXXQ, extracytoplasmic stress response-related, signaling P; 2.70A {Escherichia coli}
Probab=49.32 E-value=22 Score=18.44 Aligned_cols=27 Identities=15% Similarity=0.338 Sum_probs=20.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHH
Q psy5907 25 EIGKIIGQMWRDLPEDQKTEYVEDYEQ 51 (56)
Q Consensus 25 ei~k~l~~~W~~l~~~eK~~y~~~a~~ 51 (56)
+..+...+.+..|++++|..|.+..++
T Consensus 95 ~~~~~~~~~~~vLTPEQr~q~~~~~~k 121 (138)
T 3oeo_A 95 AHMETQNKIYNILTPEQKKQFNANFEK 121 (138)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 334556788999999999999876544
No 55
>3awu_A Tyrosinase; tyrosinase, binary complex, type-3 copper, copper transfer, oxidoreductase-metal transport complex; 1.16A {Streptomyces castaneoglobisporus} PDB: 1wx2_A 1wx4_A 1wx5_A 1wx3_A 2ahk_A 2ahl_A 2zmx_A 2zmy_A 2zmz_A 2zwd_A 2zwe_A* 2zwf_A* 2zwg_A* 3aws_A 3awt_A 1wxc_A 3awv_A 3aww_A 3awx_A 3awy_A ...
Probab=48.35 E-value=16 Score=21.16 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=17.3
Q ss_pred HHhcCCCHHHHHHHHHHHHHhh
Q psy5907 32 QMWRDLPEDQKTEYVEDYEQEK 53 (56)
Q Consensus 32 ~~W~~l~~~eK~~y~~~a~~~k 53 (56)
..|+.|+.+||..|.+.....+
T Consensus 5 ke~~~Ls~~er~~yi~Av~~l~ 26 (281)
T 3awu_A 5 KNQATLTADEKRRFVAAVLELK 26 (281)
T ss_dssp CBGGGCCHHHHHHHHHHHHHHH
T ss_pred cchHHCCHHHHHHHHHHHHHHH
Confidence 3589999999999987766554
No 56
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=47.07 E-value=7.6 Score=20.82 Aligned_cols=13 Identities=38% Similarity=0.718 Sum_probs=10.6
Q ss_pred HhcCCCHHHHHHH
Q psy5907 33 MWRDLPEDQKTEY 45 (56)
Q Consensus 33 ~W~~l~~~eK~~y 45 (56)
-|+.||.+||.--
T Consensus 47 dWk~LT~eEKkAl 59 (147)
T 1v54_D 47 SWSSLSIDEKVEL 59 (147)
T ss_dssp CGGGSCHHHHHHH
T ss_pred CHHHcCHHHHHHH
Confidence 3999999998753
No 57
>3u65_B TP33 protein; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; HET: EDO; 1.40A {Treponema pallidum subsp} PDB: 4di4_B* 4di3_D*
Probab=45.01 E-value=18 Score=21.17 Aligned_cols=21 Identities=10% Similarity=0.325 Sum_probs=16.8
Q ss_pred HHhcCCCHHHHHHHHHHHHHh
Q psy5907 32 QMWRDLPEDQKTEYVEDYEQE 52 (56)
Q Consensus 32 ~~W~~l~~~eK~~y~~~a~~~ 52 (56)
+.|..||+++|+-..+.+.+.
T Consensus 235 ~~w~~L~~e~q~~i~~a~~e~ 255 (328)
T 3u65_B 235 GSWARIPSRYHDAMLQAATRV 255 (328)
T ss_dssp HHHTTSCGGGHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHH
Confidence 569999999999888766553
No 58
>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=44.55 E-value=8.7 Score=21.08 Aligned_cols=13 Identities=38% Similarity=0.718 Sum_probs=10.6
Q ss_pred HhcCCCHHHHHHH
Q psy5907 33 MWRDLPEDQKTEY 45 (56)
Q Consensus 33 ~W~~l~~~eK~~y 45 (56)
-|+.||.+||.--
T Consensus 69 dWk~LT~eEKKAl 81 (169)
T 2y69_D 69 SWSSLSIDEKVEL 81 (169)
T ss_dssp CGGGSCHHHHHHH
T ss_pred CHHHcCHHHHHHH
Confidence 3999999998753
No 59
>3v96_A Metalloproteinase inhibitor 1; metzincin, OB-fold, metalloproteinase, protease inhibitor, H inhibitor-hydrolase complex; 1.90A {Homo sapiens} PDB: 1uea_B 1d2b_A 1oo9_B 2j0t_D 3ma2_B
Probab=44.09 E-value=6.1 Score=21.75 Aligned_cols=18 Identities=22% Similarity=0.599 Sum_probs=15.0
Q ss_pred HhcCCCHHHHHHHHHHHH
Q psy5907 33 MWRDLPEDQKTEYVEDYE 50 (56)
Q Consensus 33 ~W~~l~~~eK~~y~~~a~ 50 (56)
.|.+||..+|.-+...+.
T Consensus 104 pW~~lt~~Qrkgl~~~Y~ 121 (184)
T 3v96_A 104 PWNSLSLAQRRGFTKTYT 121 (184)
T ss_dssp EGGGSCHHHHHHHHTTGG
T ss_pred EhHHCCHHHHhhhHHHHh
Confidence 599999999998876654
No 60
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein, trap, sugar transport; HET: SLB; 1.05A {Haemophilus influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A* 2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A
Probab=43.82 E-value=28 Score=20.03 Aligned_cols=20 Identities=25% Similarity=0.506 Sum_probs=15.7
Q ss_pred HHhcCCCHHHHHHHHHHHHH
Q psy5907 32 QMWRDLPEDQKTEYVEDYEQ 51 (56)
Q Consensus 32 ~~W~~l~~~eK~~y~~~a~~ 51 (56)
+.|..||++.|....+.+.+
T Consensus 221 ~~~~~L~~~~q~~i~~a~~~ 240 (312)
T 2xwv_A 221 ETYKELPEDLQKVVKDAAEN 240 (312)
T ss_dssp HHHTTSCHHHHHHHHHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHHH
Confidence 56999999999888775544
No 61
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=43.48 E-value=24 Score=15.95 Aligned_cols=39 Identities=18% Similarity=0.085 Sum_probs=27.2
Q ss_pred HHHHHHHHHhCCCCC----HHHHHHHHHHHhcCCCHHH-HHHHH
Q psy5907 8 RKVWDQVKAQNLDLK----LWEIGKIIGQMWRDLPEDQ-KTEYV 46 (56)
Q Consensus 8 ~~~~~~~~~~~p~~~----~~ei~k~l~~~W~~l~~~e-K~~y~ 46 (56)
+..+...+.-||+.. ..+..+.|.+.|..|+... |..|.
T Consensus 22 ~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 65 (77)
T 1hdj_A 22 RAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFD 65 (77)
T ss_dssp HHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 445666667788764 5678889999998776655 44454
No 62
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.82 E-value=27 Score=16.38 Aligned_cols=39 Identities=13% Similarity=0.095 Sum_probs=26.4
Q ss_pred HHHHHHHHHhCCCCCH------HHHHHHHHHHhcCCCHHHH-HHHH
Q psy5907 8 RKVWDQVKAQNLDLKL------WEIGKIIGQMWRDLPEDQK-TEYV 46 (56)
Q Consensus 8 ~~~~~~~~~~~p~~~~------~ei~k~l~~~W~~l~~~eK-~~y~ 46 (56)
+..+..++.-||+... .+..+.|.+.|..|+...+ ..|.
T Consensus 28 ~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd 73 (92)
T 2dmx_A 28 KAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYD 73 (92)
T ss_dssp HHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 4556667777888652 4567889999987766544 4554
No 63
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=42.54 E-value=27 Score=16.30 Aligned_cols=40 Identities=13% Similarity=0.097 Sum_probs=27.4
Q ss_pred HHHHHHHHHhCCCCC----HHHHHHHHHHHhcCCCHH-HHHHHHH
Q psy5907 8 RKVWDQVKAQNLDLK----LWEIGKIIGQMWRDLPED-QKTEYVE 47 (56)
Q Consensus 8 ~~~~~~~~~~~p~~~----~~ei~k~l~~~W~~l~~~-eK~~y~~ 47 (56)
+.++...+.-||+.. ..+.-+.|.+.|..|+.. .|..|..
T Consensus 36 ~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~ 80 (88)
T 2cug_A 36 KAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDH 80 (88)
T ss_dssp HHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred HHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 455666667788764 567788899999887654 4555543
No 64
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.26 E-value=26 Score=16.58 Aligned_cols=34 Identities=9% Similarity=-0.130 Sum_probs=19.6
Q ss_pred HHHHHHHHHhCCCCC----HHHHHHHHHHHhcCCCHHH
Q psy5907 8 RKVWDQVKAQNLDLK----LWEIGKIIGQMWRDLPEDQ 41 (56)
Q Consensus 8 ~~~~~~~~~~~p~~~----~~ei~k~l~~~W~~l~~~e 41 (56)
+.++...+.-||+.. ..+.-+.|.+.|..|+...
T Consensus 46 ~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~ 83 (90)
T 2ys8_A 46 KAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNI 83 (90)
T ss_dssp HHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCcc
Confidence 345556666677753 4555566666666555443
No 65
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=42.10 E-value=11 Score=18.26 Aligned_cols=36 Identities=17% Similarity=0.010 Sum_probs=24.7
Q ss_pred HHHHHHHHHhCCCCC-----HHHHHHHHHHHhcCCCHHHHH
Q psy5907 8 RKVWDQVKAQNLDLK-----LWEIGKIIGQMWRDLPEDQKT 43 (56)
Q Consensus 8 ~~~~~~~~~~~p~~~-----~~ei~k~l~~~W~~l~~~eK~ 43 (56)
+..+...+.-||+.. ..+.-+.|.+.|..|+...+.
T Consensus 22 ~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R 62 (103)
T 1bq0_A 22 KAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKR 62 (103)
T ss_dssp HHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHH
T ss_pred HHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHH
Confidence 445556666678764 356778899999988765543
No 66
>3fxb_A Trap dicarboxylate transporter, DCTP subunit; periplasmic substrate binding protein, selectivity helix, TR membrane; HET: 4CS; 2.90A {Silicibacter pomeroyi dss-3}
Probab=42.03 E-value=18 Score=21.00 Aligned_cols=20 Identities=5% Similarity=0.101 Sum_probs=16.3
Q ss_pred HHhcCCCHHHHHHHHHHHHH
Q psy5907 32 QMWRDLPEDQKTEYVEDYEQ 51 (56)
Q Consensus 32 ~~W~~l~~~eK~~y~~~a~~ 51 (56)
+.|..||+++|.-..+.+.+
T Consensus 232 ~~w~~L~~e~q~~i~~aa~~ 251 (326)
T 3fxb_A 232 DFYDGLSAEDQQLVQNAALA 251 (326)
T ss_dssp HHHHHSCHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHH
Confidence 56999999999988876654
No 67
>2e2d_C TIMP-2, metalloproteinase inhibitor 2; matrix metalloproteinase/MMP, collagenase, tissue inhibitor of metalloproteinases/TIMP, complex, flexibility; 2.00A {Bos taurus} SCOP: b.40.3.1 PDB: 1bqq_T 1buv_T 1br9_A 1gxd_C 2tmp_A
Probab=39.49 E-value=10 Score=20.79 Aligned_cols=19 Identities=26% Similarity=0.501 Sum_probs=15.6
Q ss_pred HhcCCCHHHHHHHHHHHHH
Q psy5907 33 MWRDLPEDQKTEYVEDYEQ 51 (56)
Q Consensus 33 ~W~~l~~~eK~~y~~~a~~ 51 (56)
.|.+||..||.-+...+..
T Consensus 106 pW~~ls~~Qr~gl~~~Y~~ 124 (180)
T 2e2d_C 106 PWDTLSATQKKSLNHRYQM 124 (180)
T ss_dssp EGGGSCHHHHHHTTTHHHH
T ss_pred EhHHCCHHHHhhhHhhccC
Confidence 4999999999988777653
No 68
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.39 E-value=23 Score=16.59 Aligned_cols=40 Identities=13% Similarity=0.157 Sum_probs=26.4
Q ss_pred HHHHHHHHHhCCCCC----HHHHHHHHHHHhcCCCH-HHHHHHHH
Q psy5907 8 RKVWDQVKAQNLDLK----LWEIGKIIGQMWRDLPE-DQKTEYVE 47 (56)
Q Consensus 8 ~~~~~~~~~~~p~~~----~~ei~k~l~~~W~~l~~-~eK~~y~~ 47 (56)
+..+..++.-||+.. ..+.-..|.+.|..|+. ..|..|..
T Consensus 26 ~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~ 70 (88)
T 2ctr_A 26 KAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDT 70 (88)
T ss_dssp HHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHHHH
T ss_pred HHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 456667777789865 35666788888986654 44555543
No 69
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.58 E-value=30 Score=15.65 Aligned_cols=39 Identities=18% Similarity=0.143 Sum_probs=26.2
Q ss_pred HHHHHHHHHhCCCCC----HHHHHHHHHHHhcCCCHHH-HHHHH
Q psy5907 8 RKVWDQVKAQNLDLK----LWEIGKIIGQMWRDLPEDQ-KTEYV 46 (56)
Q Consensus 8 ~~~~~~~~~~~p~~~----~~ei~k~l~~~W~~l~~~e-K~~y~ 46 (56)
+..+...+.-||+.. ..+.-+.|.+.|..|+... |..|.
T Consensus 26 ~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD 69 (78)
T 2ctp_A 26 KAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYD 69 (78)
T ss_dssp HHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 445556666688875 4567788999998776554 45554
No 70
>4esu_A Ryanodine receptor 1; phosphorylation, skeletal, metal transport; 1.59A {Oryctolagus cuniculus} PDB: 4ert_A 4ett_A 4etu_A 3rqr_A
Probab=37.88 E-value=28 Score=19.54 Aligned_cols=18 Identities=17% Similarity=0.328 Sum_probs=14.6
Q ss_pred hcCCCHHHHHHHHHHHHH
Q psy5907 34 WRDLPEDQKTEYVEDYEQ 51 (56)
Q Consensus 34 W~~l~~~eK~~y~~~a~~ 51 (56)
|..||+.+|..|...+.+
T Consensus 64 ~~~L~e~eK~~~r~~~~e 81 (210)
T 4esu_A 64 YKTFSEKDKEIYRWPIKE 81 (210)
T ss_dssp GGGCCHHHHHHHHHHHHH
T ss_pred hhhCCHHHHHHHHHHHHH
Confidence 689999999988876543
No 71
>2jtx_A Transcription initiation factor IIE subunit alpha; TFIIE, TFIIH, activation domains, transcription regulation; NMR {Homo sapiens} PDB: 2rnq_A 2rnr_A
Probab=37.74 E-value=30 Score=17.53 Aligned_cols=29 Identities=10% Similarity=0.214 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q psy5907 23 LWEIGKIIGQMWRDLPEDQKTEYVEDYEQE 52 (56)
Q Consensus 23 ~~ei~k~l~~~W~~l~~~eK~~y~~~a~~~ 52 (56)
..+|+.. .+.=..|+++||.-|.+..++.
T Consensus 72 ~~eVt~~-P~lv~~MTp~EKEaYi~v~Q~~ 100 (106)
T 2jtx_A 72 YSEVSQR-PELVAQMTPEEKEAYIAMGQRM 100 (106)
T ss_dssp HHHHHHC-HHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHhccc-HHHHHHcCHHHHHHHHHHHHHH
Confidence 4555532 1135679999999999988764
No 72
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=37.31 E-value=36 Score=19.36 Aligned_cols=20 Identities=10% Similarity=0.097 Sum_probs=15.3
Q ss_pred HHhcCCCHHHHHHHHHHHHH
Q psy5907 32 QMWRDLPEDQKTEYVEDYEQ 51 (56)
Q Consensus 32 ~~W~~l~~~eK~~y~~~a~~ 51 (56)
+.|..||++.|....+.+.+
T Consensus 215 ~~~~~L~~~~q~~i~~a~~~ 234 (301)
T 2pfz_A 215 KAFDALDPATQQALKKAGAQ 234 (301)
T ss_dssp HHHHTSCHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHH
Confidence 56999999999887765543
No 73
>2p3x_A Polyphenol oxidase, chloroplast; grenache grapes, oxidoreductase; 2.20A {Vitis vinifera}
Probab=36.90 E-value=31 Score=20.61 Aligned_cols=24 Identities=13% Similarity=0.111 Sum_probs=18.1
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhh
Q psy5907 30 IGQMWRDLPEDQKTEYVEDYEQEK 53 (56)
Q Consensus 30 l~~~W~~l~~~eK~~y~~~a~~~k 53 (56)
+...|+.|+.+|+..|.......+
T Consensus 47 VRre~~~Ls~~er~~yi~Av~~l~ 70 (339)
T 2p3x_A 47 TRPAAHLVSKEYLAKYKKAIELQK 70 (339)
T ss_dssp EECBGGGCCHHHHHHHHHHHHHHH
T ss_pred eecchhhCCHHHHHHHHHHHHHHH
Confidence 334689999999999987666544
No 74
>1bt3_A Protein (catechol oxidase); dicopper enzyme, oxidoreductase; 2.50A {Ipomoea batatas} SCOP: a.86.1.2 PDB: 1bt2_A 1bt1_A 1bug_A*
Probab=36.67 E-value=32 Score=20.59 Aligned_cols=24 Identities=13% Similarity=0.195 Sum_probs=18.2
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhh
Q psy5907 30 IGQMWRDLPEDQKTEYVEDYEQEK 53 (56)
Q Consensus 30 l~~~W~~l~~~eK~~y~~~a~~~k 53 (56)
+...|+.|+.+|+..|.......+
T Consensus 48 VRre~~~Ls~~er~~yi~Av~~l~ 71 (345)
T 1bt3_A 48 VRPAAHTMDKDAIAKFAKAVELMK 71 (345)
T ss_dssp EECBGGGCCHHHHHHHHHHHHHHH
T ss_pred eecChhhCCHHHHHHHHHHHHHHH
Confidence 345689999999999987666544
No 75
>3d0w_A YFLH protein; GRAM-positive bacterium, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Bacillus subtilis}
Probab=36.63 E-value=19 Score=18.18 Aligned_cols=19 Identities=21% Similarity=0.520 Sum_probs=16.2
Q ss_pred HHHHHHHhcCCCHHHHHHH
Q psy5907 27 GKIIGQMWRDLPEDQKTEY 45 (56)
Q Consensus 27 ~k~l~~~W~~l~~~eK~~y 45 (56)
.+.|.+.|..-+++||...
T Consensus 75 erlLkELW~Va~eeEq~~L 93 (104)
T 3d0w_A 75 EMLLQELWSVADEDEKEHL 93 (104)
T ss_dssp HHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHH
Confidence 3789999999999999764
No 76
>3l6w_A Hemocyanin 1; cupredoxin domain, copper-binding protein, metal-binding, oxygen binding; 4.00A {Megathura crenulata} PDB: 3qjo_A
Probab=34.90 E-value=28 Score=22.16 Aligned_cols=23 Identities=9% Similarity=0.082 Sum_probs=17.9
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhh
Q psy5907 31 GQMWRDLPEDQKTEYVEDYEQEK 53 (56)
Q Consensus 31 ~~~W~~l~~~eK~~y~~~a~~~k 53 (56)
...|+.|+++||..|.+.-...+
T Consensus 4 RKEwrsLT~~Er~~Yi~AV~cLq 26 (491)
T 3l6w_A 4 RKNIHSLSHHEAEELRDALYKLQ 26 (491)
T ss_pred eeehHHCCHHHHHHHHHHHHHHh
Confidence 35699999999999987666544
No 77
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=34.83 E-value=39 Score=15.84 Aligned_cols=16 Identities=6% Similarity=0.063 Sum_probs=13.1
Q ss_pred HhCC---CCCHHHHHHHHH
Q psy5907 16 AQNL---DLKLWEIGKIIG 31 (56)
Q Consensus 16 ~~~p---~~~~~ei~k~l~ 31 (56)
.+++ .++..+|++.+|
T Consensus 20 ~~~~pg~~~t~~eLA~~Lg 38 (81)
T 1qbj_A 20 EELGEGKATTAHDLSGKLG 38 (81)
T ss_dssp HHHCTTCCBCHHHHHHHHT
T ss_pred HHcCCCCCcCHHHHHHHHC
Confidence 4566 789999999988
No 78
>3vpi_A Type VI secretion exported 1; hydrolase; HET: MSE; 1.50A {Pseudomonas aeruginosa} PDB: 3vpj_A
Probab=33.99 E-value=49 Score=17.95 Aligned_cols=35 Identities=11% Similarity=0.105 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCH
Q psy5907 5 RYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPE 39 (56)
Q Consensus 5 lf~~~~~~~~~~~~p~~~~~ei~k~l~~~W~~l~~ 39 (56)
-|.++....+-..-|.-...+|...|++.|-.+..
T Consensus 52 GFvQsV~a~fGV~LPrg~AN~mvD~l~~sW~q~~s 86 (174)
T 3vpi_A 52 GFVQSVAAELGVPMPRGNANAMVDGLEQSWTKLAS 86 (174)
T ss_dssp HHHHHHHHHHTCCCCCSSHHHHHHHHHHHSEECSC
T ss_pred HHHHHHHHHcCCCCCCcchhHHHhhhccchhcccc
Confidence 37777777777667888899999999999988843
No 79
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=33.77 E-value=44 Score=16.11 Aligned_cols=40 Identities=10% Similarity=0.063 Sum_probs=27.0
Q ss_pred HHHHHHHHHhCCCCC------HHHHHHHHHHHhcCCCHHH-HHHHHH
Q psy5907 8 RKVWDQVKAQNLDLK------LWEIGKIIGQMWRDLPEDQ-KTEYVE 47 (56)
Q Consensus 8 ~~~~~~~~~~~p~~~------~~ei~k~l~~~W~~l~~~e-K~~y~~ 47 (56)
+..+...+.-||+.. ..+..+.|.+.|..|+... |..|..
T Consensus 21 ~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~ 67 (99)
T 2lgw_A 21 KAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDR 67 (99)
T ss_dssp HHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred HHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 445666667788765 3467788999998876554 555554
No 80
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=33.40 E-value=37 Score=16.52 Aligned_cols=40 Identities=20% Similarity=0.315 Sum_probs=25.3
Q ss_pred HHHHHhCCCCCHHHH----HHHHHHHhcCCCHHHHHHHHHHHHH
Q psy5907 12 DQVKAQNLDLKLWEI----GKIIGQMWRDLPEDQKTEYVEDYEQ 51 (56)
Q Consensus 12 ~~~~~~~p~~~~~ei----~k~l~~~W~~l~~~eK~~y~~~a~~ 51 (56)
..++...++.+..-+ .-+-|..|..+|+++|+...+.+..
T Consensus 41 ~rL~~~~~~~c~~~L~aL~gAi~G~~w~~l~~~~K~~L~~~~~~ 84 (93)
T 3bqs_A 41 LRIWENDSSVCMSELYALEGAVQGIRWHGLDEAKKIELKKFHQS 84 (93)
T ss_dssp HHHHTTCTTCCHHHHHHHHHHHHTSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHcCCCHHHCCHHHHHHHHHHHHH
Confidence 345544555554222 2335578999999999887766543
No 81
>2hpg_A ABC transporter, periplasmic substrate-binding protein; periplasmic binding protein, thermophilic proteins, trap- transport; HET: MSE; 1.90A {Thermotoga maritima}
Probab=33.20 E-value=34 Score=19.88 Aligned_cols=20 Identities=15% Similarity=0.413 Sum_probs=15.3
Q ss_pred HHhcCCCHHHHHHHHHHHHH
Q psy5907 32 QMWRDLPEDQKTEYVEDYEQ 51 (56)
Q Consensus 32 ~~W~~l~~~eK~~y~~~a~~ 51 (56)
+.|..||++.|....+.+.+
T Consensus 236 ~~~~~L~~e~q~~i~~a~~~ 255 (327)
T 2hpg_A 236 DWFNSLPKEYQKIIEEEMDK 255 (327)
T ss_dssp HHHHHSCHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHH
Confidence 56899999998887775544
No 82
>4erv_A Ryanodine receptor 3; metal transport; 1.75A {Homo sapiens}
Probab=33.15 E-value=36 Score=19.02 Aligned_cols=18 Identities=22% Similarity=0.322 Sum_probs=14.7
Q ss_pred hcCCCHHHHHHHHHHHHH
Q psy5907 34 WRDLPEDQKTEYVEDYEQ 51 (56)
Q Consensus 34 W~~l~~~eK~~y~~~a~~ 51 (56)
|..||+.+|..+...+.+
T Consensus 64 ~~~L~e~eK~~~r~~~~e 81 (207)
T 4erv_A 64 FKTLTEKEKEIYRWPARE 81 (207)
T ss_dssp GGGSCHHHHHHHHHHHHH
T ss_pred hhhCCHHHHHHHHHHHHH
Confidence 789999999988877543
No 83
>1v65_A Riken cDNA 2610044O15; transcriptional repressor, heterochromatin, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.212.1.1
Probab=32.57 E-value=32 Score=14.09 Aligned_cols=18 Identities=33% Similarity=0.425 Sum_probs=14.7
Q ss_pred HHhcCCCHHHHHHHHHHH
Q psy5907 32 QMWRDLPEDQKTEYVEDY 49 (56)
Q Consensus 32 ~~W~~l~~~eK~~y~~~a 49 (56)
+.|..+.+.+|..|.+..
T Consensus 20 eew~~l~~~qk~ly~~v~ 37 (64)
T 1v65_A 20 EEWDLLDSSQKRLYEEVM 37 (64)
T ss_dssp HHHHTSCHHHHHHHHHHH
T ss_pred HHHhCCCHHHhhheeehh
Confidence 579999999998887643
No 84
>4f0w_A Effector TSE1, putative uncharacterized protein; NLPC/P60 domain, hydrolase; 1.24A {Pseudomonas aeruginosa} PDB: 4f0v_A 4f4m_A 4fge_A 4fgd_A 4fgi_A 4eq8_A* 4eob_A* 4eqa_A
Probab=32.35 E-value=53 Score=17.97 Aligned_cols=35 Identities=11% Similarity=0.105 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCH
Q psy5907 5 RYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPE 39 (56)
Q Consensus 5 lf~~~~~~~~~~~~p~~~~~ei~k~l~~~W~~l~~ 39 (56)
-|.++.-..+-..-|.-...+|...|++.|-.+..
T Consensus 66 GFvQsVya~fGVsLPrG~AN~mvD~l~~sW~q~~S 100 (188)
T 4f0w_A 66 GFVQSVAAELGVPMPRGNANAMVDGLEQSWTKLAS 100 (188)
T ss_dssp HHHHHHHHHHTCCCCCSSHHHHHHHHHHHSEECSC
T ss_pred HHHHHHHHHcCCCCCCcchhHHHhhhccchhcccc
Confidence 36777777777667888899999999999988843
No 85
>4etv_A Ryanodine receptor 2; phosphorylation, cardiac, metal transport; 1.65A {Mus musculus}
Probab=32.06 E-value=38 Score=18.96 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=14.9
Q ss_pred hcCCCHHHHHHHHHHHHH
Q psy5907 34 WRDLPEDQKTEYVEDYEQ 51 (56)
Q Consensus 34 W~~l~~~eK~~y~~~a~~ 51 (56)
|..||+.+|..+...+.+
T Consensus 64 ~~~L~e~eK~~~r~~~~e 81 (209)
T 4etv_A 64 YKLLSEKEKEIYRWPIKE 81 (209)
T ss_dssp GGGSCHHHHHHHHHHHHH
T ss_pred hhhCCHHHHHHHHHHHHH
Confidence 789999999998877643
No 86
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=31.97 E-value=18 Score=18.00 Aligned_cols=21 Identities=19% Similarity=0.439 Sum_probs=15.5
Q ss_pred HhCCCCCHHHHHHHHHHHhcC
Q psy5907 16 AQNLDLKLWEIGKIIGQMWRD 36 (56)
Q Consensus 16 ~~~p~~~~~ei~k~l~~~W~~ 36 (56)
....+++..-|+++|...|..
T Consensus 41 A~~lGiSR~~VsrlL~~Ar~~ 61 (101)
T 2w7n_A 41 ATSLGLTRGAVSQAVHRVWAA 61 (101)
T ss_dssp HHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 334578888888888888854
No 87
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=31.90 E-value=51 Score=16.31 Aligned_cols=25 Identities=20% Similarity=0.441 Sum_probs=19.7
Q ss_pred HHHHhCCCCCHHHHHHHHHHHhcCC
Q psy5907 13 QVKAQNLDLKLWEIGKIIGQMWRDL 37 (56)
Q Consensus 13 ~~~~~~p~~~~~ei~k~l~~~W~~l 37 (56)
.+++.+|+.....+++.|=..|+.+
T Consensus 61 ~LrKh~~~~~V~~lAk~Lv~~WK~~ 85 (103)
T 1wjt_A 61 GVRKHCSDKEVVSLAKVLIKNWKRL 85 (103)
T ss_dssp HHHHHCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHccCCcHHHHHHHHHHHHHHHHH
Confidence 3455568888999999999999854
No 88
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.49 E-value=24 Score=16.14 Aligned_cols=39 Identities=10% Similarity=0.025 Sum_probs=24.8
Q ss_pred HHHHHHHHHhCCCCCH------HHHHHHHHHHhcCCCHHH-HHHHH
Q psy5907 8 RKVWDQVKAQNLDLKL------WEIGKIIGQMWRDLPEDQ-KTEYV 46 (56)
Q Consensus 8 ~~~~~~~~~~~p~~~~------~ei~k~l~~~W~~l~~~e-K~~y~ 46 (56)
+..+..++.-||+... .+..+.|.+.|..|+... |..|.
T Consensus 28 ~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD 73 (82)
T 2ej7_A 28 KAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYD 73 (82)
T ss_dssp HHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHH
T ss_pred HHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 4455566666888653 346678889998776544 44444
No 89
>1lnl_A Hemocyanin; deoxygenated form, oxygen, metal binding site, cooperativity, oxygen storage-transport complex; HET: NAG; 3.30A {Rapana thomasiana} SCOP: a.86.1.1 b.112.1.1
Probab=31.44 E-value=41 Score=20.40 Aligned_cols=21 Identities=14% Similarity=0.238 Sum_probs=16.8
Q ss_pred HhcCCCHHHHHHHHHHHHHhh
Q psy5907 33 MWRDLPEDQKTEYVEDYEQEK 53 (56)
Q Consensus 33 ~W~~l~~~eK~~y~~~a~~~k 53 (56)
.|+.|+.+||..|.......+
T Consensus 9 e~~~Ls~~e~~~y~~A~~~l~ 29 (408)
T 1lnl_A 9 SVRNLSPAERASLVAALKSLQ 29 (408)
T ss_dssp BGGGCCHHHHHHHHHHHHHHT
T ss_pred chHHCCHHHHHHHHHHHHHHH
Confidence 589999999999987666544
No 90
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=31.16 E-value=23 Score=17.29 Aligned_cols=41 Identities=17% Similarity=0.159 Sum_probs=27.7
Q ss_pred HHHHHHHHHhCCCCCH--------HHHHHHHHHHhcCCCH-HHHHHHHHH
Q psy5907 8 RKVWDQVKAQNLDLKL--------WEIGKIIGQMWRDLPE-DQKTEYVED 48 (56)
Q Consensus 8 ~~~~~~~~~~~p~~~~--------~ei~k~l~~~W~~l~~-~eK~~y~~~ 48 (56)
+..+...+.-||+... .+..+.|.+.|..|+. ..|..|...
T Consensus 35 ~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~ 84 (109)
T 2qsa_A 35 KAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYY 84 (109)
T ss_dssp HHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHh
Confidence 4556667777888543 4677889999988764 445566543
No 91
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=31.04 E-value=21 Score=19.10 Aligned_cols=40 Identities=20% Similarity=0.229 Sum_probs=26.5
Q ss_pred HHHHHHHHHhCCCCCH----------HHHHHHHHHHhcCCC-HHHHHHHHH
Q psy5907 8 RKVWDQVKAQNLDLKL----------WEIGKIIGQMWRDLP-EDQKTEYVE 47 (56)
Q Consensus 8 ~~~~~~~~~~~p~~~~----------~ei~k~l~~~W~~l~-~~eK~~y~~ 47 (56)
+.++...+.-||+... .+....|.+.|..|+ +..|..|..
T Consensus 22 ~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~ 72 (171)
T 1fpo_A 22 LRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLL 72 (171)
T ss_dssp HHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred HHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence 4456666677787532 246788999999887 555656653
No 92
>2ns0_A Hypothetical protein; rhodococcus structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} SCOP: a.4.5.76
Probab=30.77 E-value=51 Score=15.98 Aligned_cols=40 Identities=13% Similarity=0.154 Sum_probs=28.0
Q ss_pred HHHHHHhCCC--CCHHHHHHHHH-HHhcCCCHHHHHHHHHHHH
Q psy5907 11 WDQVKAQNLD--LKLWEIGKIIG-QMWRDLPEDQKTEYVEDYE 50 (56)
Q Consensus 11 ~~~~~~~~p~--~~~~ei~k~l~-~~W~~l~~~eK~~y~~~a~ 50 (56)
...+....|+ +.++|+++.++ +.|+.|-+.-+.-=..++.
T Consensus 13 l~ll~~R~~~kTicPSEvARal~~~~Wr~lM~~vR~~A~~La~ 55 (85)
T 2ns0_A 13 RALLDARADSASICPSDVARAVAPDDWRPLMEPVREAAGRLAD 55 (85)
T ss_dssp HHHHHHSCTTCCBCHHHHHHHHCTTSCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCcCHHHHHHHhCchhHHHHhHHHHHHHHHHHH
Confidence 3444455564 56899999997 5699988887766555554
No 93
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=30.68 E-value=52 Score=16.01 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=29.8
Q ss_pred HHHHHHhCCCCCHHHHHH----HHHHHhcCCCHHHHHHHHHHHHHhh
Q psy5907 11 WDQVKAQNLDLKLWEIGK----IIGQMWRDLPEDQKTEYVEDYEQEK 53 (56)
Q Consensus 11 ~~~~~~~~p~~~~~ei~k----~l~~~W~~l~~~eK~~y~~~a~~~k 53 (56)
..+++..+++.+..-+-. +-|..|..+|+++|+.-.+-+...|
T Consensus 40 y~rLk~~~~~~~~~~L~aL~gAi~G~~w~~l~~~~K~~L~~~~~~lk 86 (93)
T 3mab_A 40 FLRIWENDSSVCMSELYALEGAVQGIRWHGLDEAKKIELKKFHQSLE 86 (93)
T ss_dssp HHHHHHHCTTCCHHHHHHHHHHHHTSCGGGSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHcCCcHHHCCHHHHHHHHHHHHHhh
Confidence 345666677777554433 3446899999999988777776655
No 94
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=29.55 E-value=64 Score=16.64 Aligned_cols=42 Identities=24% Similarity=0.181 Sum_probs=29.3
Q ss_pred HHHHHHHHHhCCCCC-----------HHHHHHHHHHHhcCCC-HHHHHHHHHHH
Q psy5907 8 RKVWDQVKAQNLDLK-----------LWEIGKIIGQMWRDLP-EDQKTEYVEDY 49 (56)
Q Consensus 8 ~~~~~~~~~~~p~~~-----------~~ei~k~l~~~W~~l~-~~eK~~y~~~a 49 (56)
+..+...+.-||+.. ..+....|.+.|..|+ +..|..|....
T Consensus 29 ~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~ 82 (155)
T 2l6l_A 29 QKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQR 82 (155)
T ss_dssp HHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHH
T ss_pred HHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 455666777788754 2367789999999888 45566776433
No 95
>1zda_A Mini protein A domain, Z38; IGG binding domain, protein A mimic; NMR {Synthetic construct} SCOP: k.13.1.1 PDB: 1zdb_A
Probab=29.38 E-value=14 Score=15.27 Aligned_cols=15 Identities=20% Similarity=0.415 Sum_probs=10.8
Q ss_pred cCCCHHHHHHHHHHH
Q psy5907 35 RDLPEDQKTEYVEDY 49 (56)
Q Consensus 35 ~~l~~~eK~~y~~~a 49 (56)
..|++++|.-|.+.-
T Consensus 21 ~nLtEeQrn~yI~sl 35 (38)
T 1zda_A 21 PNLNEEQRNAKIKSI 35 (38)
T ss_dssp SSSCTTHHHHHHHHH
T ss_pred CCCCHHHHHhHHHHh
Confidence 467888888887643
No 96
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=28.94 E-value=44 Score=18.92 Aligned_cols=20 Identities=10% Similarity=0.363 Sum_probs=14.6
Q ss_pred HHhcCCCHHHHHHHHHHHHH
Q psy5907 32 QMWRDLPEDQKTEYVEDYEQ 51 (56)
Q Consensus 32 ~~W~~l~~~eK~~y~~~a~~ 51 (56)
+.|..||++.+....+.+.+
T Consensus 216 ~~~~~L~~~~q~~i~~a~~~ 235 (301)
T 2pfy_A 216 RAFQRLPAEVRQAVLDAGAK 235 (301)
T ss_dssp HHHHHSCHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHH
Confidence 46888998888877765443
No 97
>1js8_A Hemocyanin; glycoprotein, mollusc, oxygen-transport, thioether bond, OXY storage-transport complex; HET: NDG NAG BMA MAN; 2.30A {Octopus dofleini} SCOP: a.86.1.1 b.112.1.1
Probab=27.80 E-value=53 Score=19.88 Aligned_cols=21 Identities=10% Similarity=0.064 Sum_probs=16.2
Q ss_pred HhcCCCHHHHHHHHHHHHHhh
Q psy5907 33 MWRDLPEDQKTEYVEDYEQEK 53 (56)
Q Consensus 33 ~W~~l~~~eK~~y~~~a~~~k 53 (56)
.|+.|+.+||..|...-...+
T Consensus 6 e~~~Ls~~e~~~y~~Al~~l~ 26 (394)
T 1js8_A 6 NVNSLTPSDIKELRDAMAKVQ 26 (394)
T ss_dssp BGGGCCHHHHHHHHHHHHHHH
T ss_pred ChHHCCHHHHHHHHHHHHHHH
Confidence 589999999999987655443
No 98
>2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine, trap-transporter, periplasmic binding protein, transport; HET: 4CS; 1.55A {Halomonas elongata} PDB: 2vpo_A* 3gyy_A
Probab=27.65 E-value=48 Score=18.96 Aligned_cols=20 Identities=10% Similarity=0.293 Sum_probs=14.9
Q ss_pred HHhcCCCHHHHHHHHHHHHH
Q psy5907 32 QMWRDLPEDQKTEYVEDYEQ 51 (56)
Q Consensus 32 ~~W~~l~~~eK~~y~~~a~~ 51 (56)
+.|..||++.|....+.+.+
T Consensus 218 ~~~~~L~~~~q~~l~~a~~~ 237 (316)
T 2vpn_A 218 DFYEGLSEEDQQLVQDAADA 237 (316)
T ss_dssp HHHHHSCHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHH
Confidence 56889999988887765443
No 99
>2atm_A Hyaluronoglucosaminidase; beta-alpha-barrels, hydrolase; HET: MES; 2.00A {Vespula vulgaris}
Probab=27.33 E-value=1.1e+02 Score=18.54 Aligned_cols=26 Identities=12% Similarity=-0.102 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHhCCCCCHHHHHHHH
Q psy5907 5 RYSRKVWDQVKAQNLDLKLWEIGKII 30 (56)
Q Consensus 5 lf~~~~~~~~~~~~p~~~~~ei~k~l 30 (56)
+|...-+..++..||+++..++.+..
T Consensus 124 iYr~~S~~lv~~~hp~ws~~~v~~~A 149 (331)
T 2atm_A 124 IHKNFSIDLVRNEHPTWNKKXIELEA 149 (331)
T ss_dssp HHHHHHHHHHHHHCTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 57777788899999999999987543
No 100
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=26.31 E-value=63 Score=15.57 Aligned_cols=31 Identities=6% Similarity=0.195 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q psy5907 21 LKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQ 51 (56)
Q Consensus 21 ~~~~ei~k~l~~~W~~l~~~eK~~y~~~a~~ 51 (56)
..+-+....+-+.|+..+..+|..|+.+.+.
T Consensus 15 g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~ 45 (94)
T 2cwy_A 15 GRYYEVHEVLEPYWLKATGEERRLLQGVILL 45 (94)
T ss_dssp TCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhhCCCchHHHHHHHHHH
Confidence 4677888899999999999899988876553
No 101
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=26.23 E-value=23 Score=16.97 Aligned_cols=16 Identities=19% Similarity=0.459 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHhcCCC
Q psy5907 23 LWEIGKIIGQMWRDLP 38 (56)
Q Consensus 23 ~~ei~k~l~~~W~~l~ 38 (56)
+..|+..+|..|+.|.
T Consensus 17 ~~~ia~~lg~~Wk~La 32 (99)
T 1fad_A 17 FDIVCDNVGRDWKRLA 32 (99)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHH
Confidence 5677888888897653
No 102
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=25.70 E-value=72 Score=16.01 Aligned_cols=34 Identities=6% Similarity=0.105 Sum_probs=27.6
Q ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q psy5907 19 LDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQE 52 (56)
Q Consensus 19 p~~~~~ei~k~l~~~W~~l~~~eK~~y~~~a~~~ 52 (56)
++++..++...+.+.|..+..-+=+.|.-.+...
T Consensus 40 d~l~~~~L~e~~keLh~~I~~LEeEKYDlE~kv~ 73 (106)
T 1j1d_B 40 DHLNEDQLREKAKELWQTIYNLEAEKFDLQEKFK 73 (106)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 6889999999999999988877777777655543
No 103
>3sjr_A Uncharacterized protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; 2.94A {Chromobacterium violaceum}
Probab=25.68 E-value=90 Score=17.09 Aligned_cols=25 Identities=12% Similarity=0.013 Sum_probs=19.6
Q ss_pred HhHHHHHHHHHHHhCCCCCHHHHHH
Q psy5907 4 MRYSRKVWDQVKAQNLDLKLWEIGK 28 (56)
Q Consensus 4 ~lf~~~~~~~~~~~~p~~~~~ei~k 28 (56)
+.|+-.....++..||+++..++..
T Consensus 98 VsfaT~FF~~yq~qhPd~~~ee~L~ 122 (175)
T 3sjr_A 98 LLGMEILMELYRQQHPDWTAPAIRQ 122 (175)
T ss_dssp HHHHHHHHHHHHHTCSSSCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 4577777888899999999877653
No 104
>3cki_B Metalloproteinase inhibitor 3; extra-cellular matrix, catalytic zinc, SA-SB loop, alternative splicing, cleavage on PAIR of basic residues; 2.30A {Homo sapiens}
Probab=25.33 E-value=19 Score=18.17 Aligned_cols=17 Identities=24% Similarity=0.436 Sum_probs=13.1
Q ss_pred HhcCCCHHHHHHHHHHH
Q psy5907 33 MWRDLPEDQKTEYVEDY 49 (56)
Q Consensus 33 ~W~~l~~~eK~~y~~~a 49 (56)
.|..|+.++|.-+...+
T Consensus 100 ~W~~ls~~qk~~~~~~Y 116 (121)
T 3cki_B 100 RWDQLTLSQRKGLNYRY 116 (121)
T ss_dssp ETTTCCHHHHHHHHTTT
T ss_pred EchhCCHHHHHHHHHHH
Confidence 49999999998766543
No 105
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A
Probab=25.10 E-value=56 Score=19.06 Aligned_cols=20 Identities=5% Similarity=0.061 Sum_probs=15.3
Q ss_pred HHhcCCCHHHHHHHHHHHHH
Q psy5907 32 QMWRDLPEDQKTEYVEDYEQ 51 (56)
Q Consensus 32 ~~W~~l~~~eK~~y~~~a~~ 51 (56)
+.|..||++.|....+.+.+
T Consensus 252 ~~~~~L~~~~q~~l~~a~~~ 271 (365)
T 2hzl_A 252 SAYEGLTPTYQSLLRTACHA 271 (365)
T ss_dssp HHHHHSCHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHH
Confidence 56899999999887765443
No 106
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=24.72 E-value=58 Score=19.01 Aligned_cols=21 Identities=19% Similarity=0.559 Sum_probs=15.7
Q ss_pred HHHhcCCCHHHHHHHHHHHHH
Q psy5907 31 GQMWRDLPEDQKTEYVEDYEQ 51 (56)
Q Consensus 31 ~~~W~~l~~~eK~~y~~~a~~ 51 (56)
.+.|..||++.|....+.+.+
T Consensus 258 ~~~~~~L~~~~q~~i~~a~~~ 278 (361)
T 2zzv_A 258 LNRWRSLPKPLQERFIAAVHE 278 (361)
T ss_dssp HHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHH
Confidence 356899999999887765543
No 107
>3n37_A Ribonucleoside-diphosphate reductase 2 subunit BE; ribonucleotide reductase, four-helix bundle, dimanganese CLU oxidoreductase; 1.65A {Escherichia coli} PDB: 3n38_A 3n39_B* 3n3a_B* 3n3b_B* 1r2f_A 2bq1_I* 2r2f_A
Probab=24.62 E-value=60 Score=19.04 Aligned_cols=16 Identities=13% Similarity=0.250 Sum_probs=13.6
Q ss_pred HhcCCCHHHHHHHHHH
Q psy5907 33 MWRDLPEDQKTEYVED 48 (56)
Q Consensus 33 ~W~~l~~~eK~~y~~~ 48 (56)
.|+.|+++||..|...
T Consensus 44 dw~~Lt~~Er~~~~~~ 59 (319)
T 3n37_A 44 AWQTLTVVEQQLTMRV 59 (319)
T ss_dssp HHTTSCHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHH
Confidence 5999999999988754
No 108
>1fcq_A Hyaluronoglucosaminidase; 7-stranded (beta/alpha) TIM barrel, glycosidase family 56, allergen, hydrolase; 1.60A {Apis mellifera} SCOP: c.1.8.9 PDB: 1fcu_A 1fcv_A* 2j88_A
Probab=24.23 E-value=1.3e+02 Score=18.38 Aligned_cols=26 Identities=8% Similarity=0.008 Sum_probs=21.4
Q ss_pred HhHHHHHHHHHHHhCCCCCHHHHHHH
Q psy5907 4 MRYSRKVWDQVKAQNLDLKLWEIGKI 29 (56)
Q Consensus 4 ~lf~~~~~~~~~~~~p~~~~~ei~k~ 29 (56)
.+|...-+..++..||+++..++.+.
T Consensus 127 ~iYr~~S~~Lv~~~hp~ws~~~v~~~ 152 (350)
T 1fcq_A 127 QPYKKLSVEVVRREHPFWDDQRVEQE 152 (350)
T ss_dssp HHHHHHHHHHHHHHCTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 35777778889999999999999754
No 109
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=23.09 E-value=93 Score=16.35 Aligned_cols=40 Identities=10% Similarity=0.048 Sum_probs=26.6
Q ss_pred HHHHHHHHHhCCCCC-----HHHHHHHHHHHhcCCCHHH-HHHHHH
Q psy5907 8 RKVWDQVKAQNLDLK-----LWEIGKIIGQMWRDLPEDQ-KTEYVE 47 (56)
Q Consensus 8 ~~~~~~~~~~~p~~~-----~~ei~k~l~~~W~~l~~~e-K~~y~~ 47 (56)
+..|...+.-||+.. ..+.-..|.+.|..|++.. |..|..
T Consensus 21 ~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~ 66 (210)
T 3apq_A 21 QAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDK 66 (210)
T ss_dssp HHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred HHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 455666677788654 4566678999998877555 455543
No 110
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=22.74 E-value=6.2 Score=23.31 Aligned_cols=29 Identities=21% Similarity=0.643 Sum_probs=18.0
Q ss_pred ChHHhHHHHHHHHHHHhCC-CCCHHHHHHH
Q psy5907 1 MPYMRYSRKVWDQVKAQNL-DLKLWEIGKI 29 (56)
Q Consensus 1 ~ay~lf~~~~~~~~~~~~p-~~~~~ei~k~ 29 (56)
++|..|..+.|..++...| .++..|+..+
T Consensus 14 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 43 (321)
T 3tqc_A 14 TPYLQFNRQQWGNFRKDTPLTLTESDLDKL 43 (321)
T ss_dssp CSEEEEEHHHHTC------CCCCHHHHHHT
T ss_pred CCceEECHHHHHHHhcCCCCCCCHHHHHHh
Confidence 4688899999998888776 4788888654
No 111
>3dhz_A Ribonucleotide reductase subunit R2F; metal free, hydrogen bond, metal binding protein; 1.63A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1kgo_A 1kgp_A 1oqu_A 1kgn_A
Probab=22.69 E-value=65 Score=19.01 Aligned_cols=16 Identities=6% Similarity=0.335 Sum_probs=13.6
Q ss_pred HhcCCCHHHHHHHHHH
Q psy5907 33 MWRDLPEDQKTEYVED 48 (56)
Q Consensus 33 ~W~~l~~~eK~~y~~~ 48 (56)
.|+.|+++||..|...
T Consensus 54 dw~~Lt~~Er~~~~~~ 69 (329)
T 3dhz_A 54 SWNKMTPQEQLATMRV 69 (329)
T ss_dssp HHHTSCHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHH
Confidence 5999999999988754
No 112
>2pe4_A Hyaluronidase-1; hyaluronan, EGF-like domain, hydrolase; HET: NAG BMA MAN; 2.00A {Homo sapiens}
Probab=22.29 E-value=1.5e+02 Score=18.56 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=21.9
Q ss_pred HhHHHHHHHHHHHhCCCCCHHHHHHHH
Q psy5907 4 MRYSRKVWDQVKAQNLDLKLWEIGKII 30 (56)
Q Consensus 4 ~lf~~~~~~~~~~~~p~~~~~ei~k~l 30 (56)
.+|...-+..++..||+++..++.+..
T Consensus 126 ~iYr~~S~~Lv~~~hp~ws~~~v~~~A 152 (424)
T 2pe4_A 126 DIYRQRSRALVQAQHPDWPAPQVEAVA 152 (424)
T ss_dssp HHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 357777788899999999999987643
No 113
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=22.06 E-value=36 Score=18.66 Aligned_cols=35 Identities=11% Similarity=0.112 Sum_probs=22.3
Q ss_pred HHHHHHHHHhCCCCC--------HHHHHHHHHHHhcCCCHHHH
Q psy5907 8 RKVWDQVKAQNLDLK--------LWEIGKIIGQMWRDLPEDQK 42 (56)
Q Consensus 8 ~~~~~~~~~~~p~~~--------~~ei~k~l~~~W~~l~~~eK 42 (56)
..+|..+..-||+.. ..+.-..|.+.|..|++..+
T Consensus 136 kAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~k 178 (182)
T 1n4c_A 136 KVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQ 178 (182)
T ss_dssp HHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHh
Confidence 445566666677642 34566778888877776543
No 114
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=21.77 E-value=41 Score=15.51 Aligned_cols=34 Identities=9% Similarity=0.117 Sum_probs=20.5
Q ss_pred HHHHHHHHHhCCCCC-HHHHHHHHHHHhcCCCHHH
Q psy5907 8 RKVWDQVKAQNLDLK-LWEIGKIIGQMWRDLPEDQ 41 (56)
Q Consensus 8 ~~~~~~~~~~~p~~~-~~ei~k~l~~~W~~l~~~e 41 (56)
...|...+.-||+.. ..+.-+.|.+.|..|+...
T Consensus 32 ~aYr~la~~~HPDk~~~~~~f~~i~~AYe~L~~~~ 66 (79)
T 1faf_A 32 QAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEV 66 (79)
T ss_dssp HHHHHHHHHSSGGGSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHhhHH
Confidence 345566666678653 3455566777777666543
No 115
>3hyi_A Protein DUF199/WHIA; laglidadg, homing endonuclease, helix-turn-helix, HTH, trans regulator; 2.34A {Thermotoga maritima} PDB: 3hyj_A
Probab=21.53 E-value=58 Score=19.22 Aligned_cols=20 Identities=35% Similarity=0.546 Sum_probs=16.5
Q ss_pred HHHHHhCCCCCHHHHHHHHH
Q psy5907 12 DQVKAQNLDLKLWEIGKIIG 31 (56)
Q Consensus 12 ~~~~~~~p~~~~~ei~k~l~ 31 (56)
..++-+||+.+-.|+...+.
T Consensus 252 a~lRl~~pdaSL~ELge~l~ 271 (295)
T 3hyi_A 252 ALVRLRNKELSLRELGKKLN 271 (295)
T ss_dssp HHHHHHCTTSCHHHHHHTTT
T ss_pred HHHHHHCccccHHHHHHHhC
Confidence 46788999999999987764
No 116
>4dr0_A Ribonucleoside-diphosphate reductase subunit beta; ribonucleotide reductase, manganese, oxidoreductase; 1.90A {Bacillus subtilis}
Probab=21.47 E-value=71 Score=19.11 Aligned_cols=16 Identities=19% Similarity=0.628 Sum_probs=13.5
Q ss_pred HhcCCCHHHHHHHHHH
Q psy5907 33 MWRDLPEDQKTEYVED 48 (56)
Q Consensus 33 ~W~~l~~~eK~~y~~~ 48 (56)
.|+.|+++||..|...
T Consensus 64 dw~~Lt~~Er~~~~~v 79 (350)
T 4dr0_A 64 TWKYLGKNEQDTYMKV 79 (350)
T ss_dssp HHHTSCHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHH
Confidence 4999999999988754
No 117
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=21.19 E-value=93 Score=16.89 Aligned_cols=19 Identities=16% Similarity=0.144 Sum_probs=12.7
Q ss_pred HhcCCCHHHHHHHHHHHHH
Q psy5907 33 MWRDLPEDQKTEYVEDYEQ 51 (56)
Q Consensus 33 ~W~~l~~~eK~~y~~~a~~ 51 (56)
.|-+||++++..+.++.++
T Consensus 64 ~~LnLT~EQq~ql~~I~~e 82 (175)
T 3lay_A 64 GGSPLTTEQQATAQKIYDD 82 (175)
T ss_dssp ----CCHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHH
Confidence 4578999999998877654
No 118
>2ph0_A Uncharacterized protein; Q6D2T7, ERWCT, NESG, EWR41, structural genomics, PSI-2, protein structure initiative; 1.85A {Pectobacterium carotovorum}
Probab=21.07 E-value=69 Score=17.29 Aligned_cols=21 Identities=24% Similarity=0.170 Sum_probs=16.3
Q ss_pred HHHHHHhCCCCCHHHHHHHHH
Q psy5907 11 WDQVKAQNLDLKLWEIGKIIG 31 (56)
Q Consensus 11 ~~~~~~~~p~~~~~ei~k~l~ 31 (56)
...++.++|++...++.+.++
T Consensus 5 ~~~~~~~~P~~~~~dla~~l~ 25 (174)
T 2ph0_A 5 LNELLATNPDGTLEDIAGKYN 25 (174)
T ss_dssp HHHHHHTCCCSCHHHHHHHTT
T ss_pred HHHHHHHCcCchHHHHHHHcC
Confidence 456778899999988887654
No 119
>4a58_A Ribonucleoside-diphosphate reductase small chain; oxidoreductase, epstein-BARR virus, R2 subunit; 1.68A {Human herpesvirus 4} PDB: 4a5c_A 4a5d_A 4a5e_A 4a5f_A 4a5h_A 4a5i_A 4a5j_A
Probab=20.96 E-value=70 Score=18.89 Aligned_cols=16 Identities=19% Similarity=-0.070 Sum_probs=13.5
Q ss_pred HhcCCCHHHHHHHHHH
Q psy5907 33 MWRDLPEDQKTEYVED 48 (56)
Q Consensus 33 ~W~~l~~~eK~~y~~~ 48 (56)
.|+.|+++||..+...
T Consensus 60 dw~~Lt~~Er~~~~~v 75 (324)
T 4a58_A 60 CLKLLNERDLEFYKFL 75 (324)
T ss_dssp HGGGSCHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHH
Confidence 4999999999988654
No 120
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=20.96 E-value=68 Score=14.65 Aligned_cols=17 Identities=6% Similarity=0.018 Sum_probs=13.7
Q ss_pred HHhCC---CCCHHHHHHHHH
Q psy5907 15 KAQNL---DLKLWEIGKIIG 31 (56)
Q Consensus 15 ~~~~p---~~~~~ei~k~l~ 31 (56)
..+++ .++..||++.+|
T Consensus 23 L~~~~~~~~~t~~eLA~~Lg 42 (77)
T 1qgp_A 23 LEELGEGKATTAHDLSGKLG 42 (77)
T ss_dssp HHHHCSSSCEEHHHHHHHHC
T ss_pred HHHcCCCCCcCHHHHHHHHC
Confidence 45667 788999999887
No 121
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=20.91 E-value=82 Score=17.38 Aligned_cols=39 Identities=8% Similarity=0.103 Sum_probs=25.7
Q ss_pred HHHHHHHHHhCCCCCH----------HHHHHHHHHHhcCCC-HHHHHHHH
Q psy5907 8 RKVWDQVKAQNLDLKL----------WEIGKIIGQMWRDLP-EDQKTEYV 46 (56)
Q Consensus 8 ~~~~~~~~~~~p~~~~----------~ei~k~l~~~W~~l~-~~eK~~y~ 46 (56)
+.+|...+.-||+... .+..+.|.+.+..|+ +..|..|.
T Consensus 64 ~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd 113 (207)
T 3bvo_A 64 HRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYL 113 (207)
T ss_dssp HHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred HHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 4456666677887542 234578899998887 55566664
No 122
>3lns_A Benzaldehyde dehydrogenase; oxidoreductase, NADP+, class 3 aldehyde dehyd adduct, covalent catalysis, mandelate racemase pathway; HET: ZBZ NAP; 2.50A {Pseudomonas putida} PDB: 3lv1_A*
Probab=20.88 E-value=1.5e+02 Score=18.05 Aligned_cols=37 Identities=8% Similarity=-0.017 Sum_probs=23.9
Q ss_pred HHHhCCCCCHHHHHHHHH------HHhcCCCHHHHHHHHHHHH
Q psy5907 14 VKAQNLDLKLWEIGKIIG------QMWRDLPEDQKTEYVEDYE 50 (56)
Q Consensus 14 ~~~~~p~~~~~ei~k~l~------~~W~~l~~~eK~~y~~~a~ 50 (56)
...+.|..+..++...+. ..|+.+|.++|........
T Consensus 18 ~i~~v~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a 60 (457)
T 3lns_A 18 DDKHMNYLSPAKIDSLFSAQKAYFATRATADVGFRKQSLERLK 60 (457)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHH
T ss_pred eeeecCCCCHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 345567788788776654 4599999999988765443
No 123
>2hq2_A Putative heme/hemoglobin transport protein; heme oxygenase, structural repeat; HET: HEM; 1.45A {Escherichia coli} SCOP: e.62.1.1 PDB: 1u9t_A
Probab=20.81 E-value=1e+02 Score=18.75 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=17.9
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHH
Q psy5907 9 KVWDQVKAQNLDLKLWEIGKIIG 31 (56)
Q Consensus 9 ~~~~~~~~~~p~~~~~ei~k~l~ 31 (56)
+....++.++|++...++++.+|
T Consensus 17 ~~~~~l~~e~P~~~~rdlA~~Lg 39 (354)
T 2hq2_A 17 TRWLELKEQNPGKYARDIAGLMN 39 (354)
T ss_dssp HHHHHHHHHSTTCCHHHHHHHTT
T ss_pred HHHHHHHHHCCCCcHHHHHHHcC
Confidence 44567888999999999887654
No 124
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=20.77 E-value=1e+02 Score=16.08 Aligned_cols=33 Identities=12% Similarity=0.166 Sum_probs=26.2
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q psy5907 20 DLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQE 52 (56)
Q Consensus 20 ~~~~~ei~k~l~~~W~~l~~~eK~~y~~~a~~~ 52 (56)
+++..++...+.+.|..+..-+=+.|.-.+...
T Consensus 57 ~ls~~~L~e~~keLh~~I~~LEeEKYDlE~kvk 89 (133)
T 1j1d_C 57 GLGFAELQDLARQLHARVDKVDEERYDIEAKVT 89 (133)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 567899999999999988877777777655543
No 125
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=20.66 E-value=56 Score=16.42 Aligned_cols=33 Identities=15% Similarity=0.117 Sum_probs=25.7
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q psy5907 20 DLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQE 52 (56)
Q Consensus 20 ~~~~~ei~k~l~~~W~~l~~~eK~~y~~~a~~~ 52 (56)
+++..++...+.+.|..+..-+=+.|.-.+...
T Consensus 41 ~l~~~~L~e~~keLh~~I~~lEeEKYDlE~kv~ 73 (107)
T 1ytz_T 41 HLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIK 73 (107)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 567889999999999988877777777655543
No 126
>2j0p_A HEMS, hemin transport protein HEMS; conformational changes, HAEM, iron, trans ION transport, proteobacteria, iron transport; HET: HEM 12P; 1.7A {Yersinia enterocolitica} SCOP: e.62.1.1 PDB: 2j0r_A*
Probab=20.52 E-value=95 Score=18.75 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=17.8
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHH
Q psy5907 9 KVWDQVKAQNLDLKLWEIGKIIG 31 (56)
Q Consensus 9 ~~~~~~~~~~p~~~~~ei~k~l~ 31 (56)
+....++.++|++...++++.+|
T Consensus 7 ~~~~~~~~~~P~~~~rd~A~~lg 29 (345)
T 2j0p_A 7 EQYLQAKADNPGKYARDLATLMG 29 (345)
T ss_dssp HHHHHHHHTCTTCCHHHHHHHTT
T ss_pred HHHHHHHHhCcCCcHHHHHHHcC
Confidence 44567888999999888887654
No 127
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=20.43 E-value=41 Score=15.08 Aligned_cols=30 Identities=13% Similarity=-0.129 Sum_probs=15.1
Q ss_pred HHHHHHHHHhCCCCC-HHHHHHHHHHHhcCC
Q psy5907 8 RKVWDQVKAQNLDLK-LWEIGKIIGQMWRDL 37 (56)
Q Consensus 8 ~~~~~~~~~~~p~~~-~~ei~k~l~~~W~~l 37 (56)
...+..++.-||+.. ..+..+.|.+.|..|
T Consensus 34 ~ayr~l~~~~HPDk~g~~~~f~~i~~Aye~L 64 (71)
T 2guz_A 34 EVHRKIMLANHPDKGGSPFLATKINEAKDFL 64 (71)
T ss_dssp HHHHHHHHHHCGGGTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
Confidence 344555666677642 233444555555444
No 128
>3olj_A Ribonucleoside-diphosphate reductase subunit M2; metal-binding, HRRM2, oxidoreductase; 2.10A {Homo sapiens} PDB: 4djn_A
Probab=20.34 E-value=54 Score=18.93 Aligned_cols=16 Identities=13% Similarity=0.289 Sum_probs=13.3
Q ss_pred HhcCCCHHHHHHHHHH
Q psy5907 33 MWRDLPEDQKTEYVED 48 (56)
Q Consensus 33 ~W~~l~~~eK~~y~~~ 48 (56)
.|+.|+++||..+...
T Consensus 51 dw~~L~~~Er~~~~~~ 66 (286)
T 3olj_A 51 HWESLKPEERYFISHV 66 (286)
T ss_dssp HHHHSCHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHH
Confidence 4999999999987654
No 129
>3mjo_A Ribonucleotide reductase subunit R2F; Mn ribonucleotide reductase, RNR, radical enzyme, split SIGN metallocofactor; 1.36A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1uzr_A*
Probab=20.19 E-value=54 Score=19.04 Aligned_cols=16 Identities=6% Similarity=0.335 Sum_probs=13.5
Q ss_pred HhcCCCHHHHHHHHHH
Q psy5907 33 MWRDLPEDQKTEYVED 48 (56)
Q Consensus 33 ~W~~l~~~eK~~y~~~ 48 (56)
.|+.|+++||..+...
T Consensus 53 dw~~Ls~~Er~~~~~~ 68 (296)
T 3mjo_A 53 SWNKMTPQEQLATMRV 68 (296)
T ss_dssp HHHHSCHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHH
Confidence 5999999999988754
No 130
>2rcc_A Ribonucleoside-diphosphate reductase subunit beta; NP_241368.1, putative class I ribonucleotide reductase, ribonucleotide reductase; HET: MSE PGE PG4; 1.90A {Bacillus halodurans c-125}
Probab=20.04 E-value=74 Score=18.80 Aligned_cols=17 Identities=12% Similarity=0.292 Sum_probs=14.0
Q ss_pred HHhcCCCHHHHHHHHHH
Q psy5907 32 QMWRDLPEDQKTEYVED 48 (56)
Q Consensus 32 ~~W~~l~~~eK~~y~~~ 48 (56)
..|+.|+++||..|...
T Consensus 65 ~dw~~Lt~~Er~~~~~~ 81 (346)
T 2rcc_A 65 KQFPTLTETEQEAFKKI 81 (346)
T ss_dssp HHGGGSCHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHH
Confidence 34999999999988754
Done!