Your job contains 1 sequence.
>psy5907
MPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKIYK
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy5907
(56 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|B4DFR4 - symbol:SMARCE1 "Smarce1 variant 5" spe... 234 1.2e-19 1
UNIPROTKB|J3KT85 - symbol:SMARCE1 "SWI/SNF-related matrix... 234 1.2e-19 1
UNIPROTKB|J3QKX6 - symbol:SMARCE1 "SWI/SNF-related matrix... 234 1.2e-19 1
UNIPROTKB|J3QR61 - symbol:SMARCE1 "SWI/SNF-related matrix... 234 1.2e-19 1
UNIPROTKB|F1RXE6 - symbol:SMARCE1 "Uncharacterized protei... 234 1.2e-19 1
RGD|1304726 - symbol:Smarce1 "SWI/SNF related, matrix ass... 234 2.1e-19 1
UNIPROTKB|E2QX86 - symbol:SMARCE1 "Uncharacterized protei... 234 2.7e-19 1
UNIPROTKB|B4DGM3 - symbol:SMARCE1 "cDNA FLJ55202, highly ... 234 2.7e-19 1
UNIPROTKB|Q969G3 - symbol:SMARCE1 "SWI/SNF-related matrix... 234 3.3e-19 1
MGI|MGI:1927347 - symbol:Smarce1 "SWI/SNF related, matrix... 234 3.3e-19 1
UNIPROTKB|F1NCC9 - symbol:SMARCE1 "Uncharacterized protei... 234 3.3e-19 1
UNIPROTKB|A5PKF6 - symbol:SMARCE1 "SMARCE1 protein" speci... 234 3.4e-19 1
FB|FBgn0030093 - symbol:dalao "dalao" species:7227 "Droso... 210 5.7e-16 1
WB|WBGene00022182 - symbol:swsn-3 species:6239 "Caenorhab... 179 2.3e-13 1
RGD|620682 - symbol:Tfam "transcription factor A, mitocho... 107 9.9e-06 1
UNIPROTKB|A8MRB2 - symbol:TFAM "Transcription factor A, m... 105 1.2e-05 1
UNIPROTKB|Q00059 - symbol:TFAM "Transcription factor A, m... 105 1.7e-05 1
MGI|MGI:107810 - symbol:Tfam "transcription factor A, mit... 104 2.2e-05 1
UNIPROTKB|Q5D144 - symbol:TFAM "Transcription factor A, m... 102 3.7e-05 1
UNIPROTKB|E1BA21 - symbol:TFAM "Transcription factor A, m... 101 4.8e-05 1
UNIPROTKB|Q0II87 - symbol:TFAM "Transcription factor A, m... 101 4.8e-05 1
SGD|S000004676 - symbol:ABF2 "Mitochondrial DNA-binding p... 97 5.9e-05 1
UNIPROTKB|Q4H0T5 - symbol:TFAM "Transcription factor A, m... 96 0.00017 1
SGD|S000001515 - symbol:IXR1 "Protein that binds DNA intr... 101 0.00020 1
UNIPROTKB|P0CB47 - symbol:UBTFL1 "Putative upstream-bindi... 97 0.00030 1
TAIR|locus:2136103 - symbol:3xHMG-box1 "3xHigh Mobility G... 96 0.00047 1
UNIPROTKB|C9JQA7 - symbol:HMG20B "SWI/SNF-related matrix-... 85 0.00072 1
>UNIPROTKB|B4DFR4 [details] [associations]
symbol:SMARCE1 "Smarce1 variant 5" species:9606 "Homo
sapiens" [GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0071564
"npBAF complex" evidence=IEA] [GO:0071565 "nBAF complex"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
UniGene:Hs.740388 HGNC:HGNC:11109 HOVERGEN:HBG054558 EMBL:AC004585
EMBL:AC073508 EMBL:EU327019 EMBL:AK294218 IPI:IPI01015775
SMR:B4DFR4 STRING:B4DFR4 Ensembl:ENST00000544009
Ensembl:ENST00000578044 Uniprot:B4DFR4
Length = 341
Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 42/54 (77%), Positives = 47/54 (87%)
Query: 1 MPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKI 54
MPYMRYSRKVWDQVKA N DLKLWEIGKIIG MWRDL +++K EY+ +YE EKI
Sbjct: 1 MPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKI 54
>UNIPROTKB|J3KT85 [details] [associations]
symbol:SMARCE1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member 1"
species:9606 "Homo sapiens" [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565
"nBAF complex" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
HGNC:HGNC:11109 EMBL:AC004585 EMBL:AC073508 Ensembl:ENST00000577721
Uniprot:J3KT85
Length = 101
Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 42/54 (77%), Positives = 47/54 (87%)
Query: 1 MPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKI 54
MPYMRYSRKVWDQVKA N DLKLWEIGKIIG MWRDL +++K EY+ +YE EKI
Sbjct: 1 MPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKI 54
>UNIPROTKB|J3QKX6 [details] [associations]
symbol:SMARCE1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member 1"
species:9606 "Homo sapiens" [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565
"nBAF complex" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
HGNC:HGNC:11109 EMBL:AC004585 EMBL:AC073508 Ensembl:ENST00000582955
Uniprot:J3QKX6
Length = 129
Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 42/54 (77%), Positives = 47/54 (87%)
Query: 1 MPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKI 54
MPYMRYSRKVWDQVKA N DLKLWEIGKIIG MWRDL +++K EY+ +YE EKI
Sbjct: 71 MPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKI 124
>UNIPROTKB|J3QR61 [details] [associations]
symbol:SMARCE1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member 1"
species:9606 "Homo sapiens" [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565
"nBAF complex" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
HGNC:HGNC:11109 EMBL:AC004585 EMBL:AC073508 Ensembl:ENST00000580654
Uniprot:J3QR61
Length = 153
Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 42/54 (77%), Positives = 47/54 (87%)
Query: 1 MPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKI 54
MPYMRYSRKVWDQVKA N DLKLWEIGKIIG MWRDL +++K EY+ +YE EKI
Sbjct: 53 MPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKI 106
>UNIPROTKB|F1RXE6 [details] [associations]
symbol:SMARCE1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0017053 "transcriptional repressor
complex" evidence=IEA] [GO:0016922 "ligand-dependent nuclear
receptor binding" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008080 "N-acetyltransferase activity"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006337 "nucleosome disassembly" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0017053 GO:GO:0045892
GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0008080 GO:GO:0006337 GeneTree:ENSGT00390000003628
EMBL:CU856162 Ensembl:ENSSSCT00000019017 OMA:HANINAK Uniprot:F1RXE6
Length = 194
Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 42/54 (77%), Positives = 47/54 (87%)
Query: 1 MPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKI 54
MPYMRYSRKVWDQVKA N DLKLWEIGKIIG MWRDL +++K EY+ +YE EKI
Sbjct: 71 MPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKI 124
>RGD|1304726 [details] [associations]
symbol:Smarce1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily e, member 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006337
"nucleosome disassembly" evidence=ISO] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0008080 "N-acetyltransferase activity"
evidence=ISO] [GO:0016514 "SWI/SNF complex" evidence=ISO]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016922
"ligand-dependent nuclear receptor binding" evidence=ISO]
[GO:0017053 "transcriptional repressor complex" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0047485 "protein N-terminus binding"
evidence=ISO] [GO:0071564 "npBAF complex" evidence=ISO] [GO:0071565
"nBAF complex" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505 RGD:1304726
GO:GO:0005634 GO:GO:0007399 GO:GO:0003677 GO:GO:0016568
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
UniGene:Rn.10829 HOVERGEN:HBG054558 KO:K11651 EMBL:BC091314
EMBL:BC092210 EMBL:EU327027 EMBL:EU327028 EMBL:EU327029
EMBL:EU327030 EMBL:EU327031 IPI:IPI00370983 RefSeq:NP_001020164.1
UniGene:Rn.8513 ProteinModelPortal:Q56A18 STRING:Q56A18
GeneID:303518 KEGG:rno:303518 InParanoid:Q56A18 NextBio:651503
Genevestigator:Q56A18 Uniprot:Q56A18
Length = 376
Score = 234 (87.4 bits), Expect = 2.1e-19, P = 2.1e-19
Identities = 42/54 (77%), Positives = 47/54 (87%)
Query: 1 MPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKI 54
MPYMRYSRKVWDQVKA N DLKLWEIGKIIG MWRDL +++K EY+ +YE EKI
Sbjct: 36 MPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKI 89
>UNIPROTKB|E2QX86 [details] [associations]
symbol:SMARCE1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0071565 "nBAF complex" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0047485 "protein
N-terminus binding" evidence=IEA] [GO:0045892 "negative regulation
of transcription, DNA-dependent" evidence=IEA] [GO:0017053
"transcriptional repressor complex" evidence=IEA] [GO:0016922
"ligand-dependent nuclear receptor binding" evidence=IEA]
[GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0008080
"N-acetyltransferase activity" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0006337 "nucleosome disassembly"
evidence=IEA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0017053
GO:GO:0045892 GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0008080 GO:GO:0006337 CTD:6605 KO:K11651
OMA:EDESIPM GeneTree:ENSGT00390000003628 EMBL:AAEX03006463
RefSeq:XP_862912.2 Ensembl:ENSCAFT00000025430 GeneID:608250
KEGG:cfa:608250 NextBio:20893916 Uniprot:E2QX86
Length = 393
Score = 234 (87.4 bits), Expect = 2.7e-19, P = 2.7e-19
Identities = 42/54 (77%), Positives = 47/54 (87%)
Query: 1 MPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKI 54
MPYMRYSRKVWDQVKA N DLKLWEIGKIIG MWRDL +++K EY+ +YE EKI
Sbjct: 53 MPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKI 106
>UNIPROTKB|B4DGM3 [details] [associations]
symbol:SMARCE1 "cDNA FLJ55202, highly similar to
SWI/SNF-related matrix-associatedactin-dependent regulator of
chromatin subfamily E member 1" species:9606 "Homo sapiens"
[GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0071564 GO:GO:0016514 GO:GO:0071565 UniGene:Hs.740388
HGNC:HGNC:11109 HOVERGEN:HBG054558 OrthoDB:EOG4229K4 EMBL:AC004585
EMBL:AC073508 EMBL:AK294666 IPI:IPI01015411 SMR:B4DGM3
STRING:B4DGM3 Ensembl:ENST00000431889 Uniprot:B4DGM3
Length = 393
Score = 234 (87.4 bits), Expect = 2.7e-19, P = 2.7e-19
Identities = 42/54 (77%), Positives = 47/54 (87%)
Query: 1 MPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKI 54
MPYMRYSRKVWDQVKA N DLKLWEIGKIIG MWRDL +++K EY+ +YE EKI
Sbjct: 53 MPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKI 106
>UNIPROTKB|Q969G3 [details] [associations]
symbol:SMARCE1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0047485 "protein N-terminus
binding" evidence=IPI] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0017053
"transcriptional repressor complex" evidence=IPI] [GO:0008080
"N-acetyltransferase activity" evidence=IDA] [GO:0016514 "SWI/SNF
complex" evidence=IDA] [GO:0071564 "npBAF complex" evidence=ISS]
[GO:0071565 "nBAF complex" evidence=ISS] [GO:0003682 "chromatin
binding" evidence=TAS] [GO:0000228 "nuclear chromosome"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0003713
"transcription coactivator activity" evidence=NAS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=NAS] [GO:0006337 "nucleosome disassembly" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=IDA] [GO:0016922
"ligand-dependent nuclear receptor binding" evidence=IPI]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR009071
PROSITE:PS00353 Pfam:PF00505 GO:GO:0017053 GO:GO:0045892
GO:GO:0007399 GO:GO:0003677 EMBL:CH471152 GO:GO:0006357
GO:GO:0003682 GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0003713 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 Pathway_Interaction_DB:ar_tf_pathway
GO:GO:0008080 GO:GO:0006337 GO:GO:0000228 EMBL:AF035262
EMBL:BT007176 EMBL:AK001532 EMBL:AK095047 EMBL:BC007082
EMBL:BC011017 EMBL:BC063700 IPI:IPI00017669 IPI:IPI01018063
RefSeq:NP_003070.3 UniGene:Hs.740388 ProteinModelPortal:Q969G3
SMR:Q969G3 DIP:DIP-27614N DIP:DIP-33041N IntAct:Q969G3
MINT:MINT-1137973 STRING:Q969G3 PhosphoSite:Q969G3 DMDM:61247587
PaxDb:Q969G3 PRIDE:Q969G3 DNASU:6605 Ensembl:ENST00000348513
GeneID:6605 KEGG:hsa:6605 UCSC:uc002hux.2 CTD:6605
GeneCards:GC17M038781 HGNC:HGNC:11109 HPA:HPA003916 MIM:603111
neXtProt:NX_Q969G3 PharmGKB:PA35959 eggNOG:NOG291422
HOGENOM:HOG000230965 HOVERGEN:HBG054558 InParanoid:Q969G3 KO:K11651
OMA:EDESIPM OrthoDB:EOG4229K4 GenomeRNAi:6605 NextBio:25703
ArrayExpress:Q969G3 Bgee:Q969G3 CleanEx:HS_SMARCE1
Genevestigator:Q969G3 GermOnline:ENSG00000073584 Uniprot:Q969G3
Length = 411
Score = 234 (87.4 bits), Expect = 3.3e-19, P = 3.3e-19
Identities = 42/54 (77%), Positives = 47/54 (87%)
Query: 1 MPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKI 54
MPYMRYSRKVWDQVKA N DLKLWEIGKIIG MWRDL +++K EY+ +YE EKI
Sbjct: 71 MPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKI 124
>MGI|MGI:1927347 [details] [associations]
symbol:Smarce1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily e, member 1"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006337 "nucleosome
disassembly" evidence=ISO] [GO:0006338 "chromatin remodeling"
evidence=ISO] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0008080 "N-acetyltransferase activity"
evidence=ISO] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016922
"ligand-dependent nuclear receptor binding" evidence=ISO]
[GO:0017053 "transcriptional repressor complex" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0047485 "protein N-terminus binding"
evidence=ISO] [GO:0071564 "npBAF complex" evidence=IDA] [GO:0071565
"nBAF complex" evidence=IDA] InterPro:IPR009071 PROSITE:PS00353
MGI:MGI:1927347 Pfam:PF00505 GO:GO:0017053 GO:GO:0045892
GO:GO:0007399 GO:GO:0003677 GO:GO:0006338 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 GO:GO:0008080 GO:GO:0006337 CTD:6605
eggNOG:NOG291422 HOGENOM:HOG000230965 HOVERGEN:HBG054558 KO:K11651
OMA:EDESIPM OrthoDB:EOG4229K4 EMBL:AF035263 EMBL:AK076177
EMBL:BC047141 EMBL:BC061498 EMBL:BC065043 IPI:IPI00119892
RefSeq:NP_065643.1 UniGene:Mm.379086 UniGene:Mm.389717
ProteinModelPortal:O54941 SMR:O54941 IntAct:O54941 STRING:O54941
PhosphoSite:O54941 PaxDb:O54941 PRIDE:O54941
Ensembl:ENSMUST00000103133 GeneID:57376 KEGG:mmu:57376
GeneTree:ENSGT00390000003628 InParanoid:O54941 ChiTaRS:SMARCE1
NextBio:313752 Bgee:O54941 Genevestigator:O54941
GermOnline:ENSMUSG00000037935 Uniprot:O54941
Length = 411
Score = 234 (87.4 bits), Expect = 3.3e-19, P = 3.3e-19
Identities = 42/54 (77%), Positives = 47/54 (87%)
Query: 1 MPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKI 54
MPYMRYSRKVWDQVKA N DLKLWEIGKIIG MWRDL +++K EY+ +YE EKI
Sbjct: 71 MPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKI 124
>UNIPROTKB|F1NCC9 [details] [associations]
symbol:SMARCE1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006337 "nucleosome disassembly" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0008080
"N-acetyltransferase activity" evidence=IEA] [GO:0016514 "SWI/SNF
complex" evidence=IEA] [GO:0016922 "ligand-dependent nuclear
receptor binding" evidence=IEA] [GO:0017053 "transcriptional
repressor complex" evidence=IEA] [GO:0045892 "negative regulation
of transcription, DNA-dependent" evidence=IEA] [GO:0047485 "protein
N-terminus binding" evidence=IEA] [GO:0071564 "npBAF complex"
evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0017053 GO:GO:0045892
GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0008080 GO:GO:0006337 CTD:6605 KO:K11651 OMA:EDESIPM
GeneTree:ENSGT00390000003628 EMBL:AADN02068741 IPI:IPI00580760
RefSeq:NP_001006335.2 UniGene:Gga.6244 Ensembl:ENSGALT00000006174
GeneID:420047 KEGG:gga:420047 NextBio:20823013 Uniprot:F1NCC9
Length = 412
Score = 234 (87.4 bits), Expect = 3.3e-19, P = 3.3e-19
Identities = 42/54 (77%), Positives = 47/54 (87%)
Query: 1 MPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKI 54
MPYMRYSRKVWDQVKA N DLKLWEIGKIIG MWRDL +++K EY+ +YE EKI
Sbjct: 71 MPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKI 124
>UNIPROTKB|A5PKF6 [details] [associations]
symbol:SMARCE1 "SMARCE1 protein" species:9913 "Bos taurus"
[GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0017053 "transcriptional repressor
complex" evidence=IEA] [GO:0016922 "ligand-dependent nuclear
receptor binding" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008080 "N-acetyltransferase activity"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006337 "nucleosome disassembly" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0017053 GO:GO:0045892
GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0008080 GO:GO:0006337 CTD:6605 eggNOG:NOG291422
HOGENOM:HOG000230965 HOVERGEN:HBG054558 KO:K11651 OMA:EDESIPM
OrthoDB:EOG4229K4 GeneTree:ENSGT00390000003628 EMBL:DAAA02049142
EMBL:BC142470 IPI:IPI00854477 RefSeq:NP_001092586.1
UniGene:Bt.46178 STRING:A5PKF6 Ensembl:ENSBTAT00000020356
GeneID:540910 KEGG:bta:540910 InParanoid:A5PKF6 NextBio:20878909
Uniprot:A5PKF6
Length = 415
Score = 234 (87.4 bits), Expect = 3.4e-19, P = 3.4e-19
Identities = 42/54 (77%), Positives = 47/54 (87%)
Query: 1 MPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKI 54
MPYMRYSRKVWDQVKA N DLKLWEIGKIIG MWRDL +++K EY+ +YE EKI
Sbjct: 71 MPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKI 124
>FB|FBgn0030093 [details] [associations]
symbol:dalao "dalao" species:7227 "Drosophila melanogaster"
[GO:0003713 "transcription coactivator activity" evidence=IC]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0035060 "brahma complex" evidence=NAS;IDA;IPI]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003677 "DNA
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=IGI;IPI]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0045893 GO:GO:0006338
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0035060 HSSP:P07155 EMBL:AF348329 ProteinModelPortal:Q9BIW6
DIP:DIP-36731N IntAct:Q9BIW6 STRING:Q9BIW6 PRIDE:Q9BIW6
FlyBase:FBgn0030093 InParanoid:Q9BIW6 ArrayExpress:Q9BIW6
Bgee:Q9BIW6 Uniprot:Q9BIW6
Length = 749
Score = 210 (79.0 bits), Expect = 5.7e-16, P = 5.7e-16
Identities = 34/54 (62%), Positives = 48/54 (88%)
Query: 1 MPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKI 54
+PYMRYS++VWD VKA++ +LKLWE+GK IG MW+ LPED+KTE++++YE EK+
Sbjct: 94 LPYMRYSKRVWDSVKAKHPELKLWELGKKIGAMWKLLPEDEKTEFIDEYEAEKL 147
>WB|WBGene00022182 [details] [associations]
symbol:swsn-3 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0010171
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0040035 eggNOG:NOG291422 HOGENOM:HOG000230965 KO:K11651
GeneTree:ENSGT00390000003628 EMBL:FO081822 RefSeq:NP_497613.2
ProteinModelPortal:Q9BL39 SMR:Q9BL39 STRING:Q9BL39 PaxDb:Q9BL39
EnsemblMetazoa:Y71H2AM.17 GeneID:175393 KEGG:cel:CELE_Y71H2AM.17
UCSC:Y71H2AM.17 CTD:175393 WormBase:Y71H2AM.17 InParanoid:Q9BL39
OMA:IQPVDED NextBio:887970 Uniprot:Q9BL39
Length = 338
Score = 179 (68.1 bits), Expect = 2.3e-13, P = 2.3e-13
Identities = 29/52 (55%), Positives = 42/52 (80%)
Query: 2 PYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEK 53
PYMRYSRK+W +V+A+N + +LW+IGK+IG+ W DLP+ +K+ Y +YE EK
Sbjct: 32 PYMRYSRKMWPKVRAENPEAQLWDIGKMIGKYWLDLPDGEKSHYQHEYELEK 83
>RGD|620682 [details] [associations]
symbol:Tfam "transcription factor A, mitochondrial" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003682 "chromatin binding" evidence=ISO;ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISO;IMP;TAS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=ISO;IDA] [GO:0006264
"mitochondrial DNA replication" evidence=TAS] [GO:0006390
"transcription from mitochondrial promoter" evidence=ISO;IMP;TAS]
[GO:0006391 "transcription initiation from mitochondrial promoter"
evidence=ISO;ISS] [GO:0008301 "DNA binding, bending"
evidence=ISO;ISS] [GO:0031072 "heat shock protein binding"
evidence=IPI] [GO:0033108 "mitochondrial respiratory chain complex
assembly" evidence=IEA;ISO] [GO:0042645 "mitochondrial nucleoid"
evidence=ISO;ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO;ISS] [GO:0070363
"mitochondrial light strand promoter sense binding"
evidence=ISO;ISS] InterPro:IPR009071 Pfam:PF00505 RGD:620682
GO:GO:0005634 GO:GO:0045893 GO:GO:0003700 GO:GO:0003682
GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0042645 GO:GO:0033108 Pfam:PF09011
GO:GO:0006264 GO:GO:0006391 CTD:7019 eggNOG:NOG297801
HOGENOM:HOG000139423 HOVERGEN:HBG106674 KO:K11830 GO:GO:0070363
OMA:YENEMKS OrthoDB:EOG4KKZ4D GeneTree:ENSGT00440000039001
EMBL:AB014089 EMBL:AJ312746 EMBL:AF377866 EMBL:BC062022
IPI:IPI00327334 RefSeq:NP_112616.1 UniGene:Rn.18266
ProteinModelPortal:Q91ZW1 STRING:Q91ZW1 PRIDE:Q91ZW1
Ensembl:ENSRNOT00000000753 GeneID:83474 KEGG:rno:83474
UCSC:RGD:620682 InParanoid:Q91ZW1 NextBio:615889
ArrayExpress:Q91ZW1 Genevestigator:Q91ZW1
GermOnline:ENSRNOG00000000613 Uniprot:Q91ZW1
Length = 244
Score = 107 (42.7 bits), Expect = 9.9e-06, P = 9.9e-06
Identities = 22/55 (40%), Positives = 36/55 (65%)
Query: 3 YMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQE-KIYK 56
Y+R+S + + KA++ D K+ E+ + I MWR+LPE +K Y D++ E K+YK
Sbjct: 56 YLRFSTEQLPKFKAKHPDAKVSELIRKIAAMWRELPEAEKKVYEADFKAEWKVYK 110
>UNIPROTKB|A8MRB2 [details] [associations]
symbol:TFAM "Transcription factor A, mitochondrial"
species:9606 "Homo sapiens" [GO:0005739 "mitochondrion"
evidence=IDA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005739
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 CTD:7019 HOGENOM:HOG000139423 HOVERGEN:HBG106674
KO:K11830 EMBL:AC023170 UniGene:Hs.594250 GeneID:7019 KEGG:hsa:7019
HGNC:HGNC:11741 ChiTaRS:TFAM IPI:IPI00644515 RefSeq:NP_001257711.1
ProteinModelPortal:A8MRB2 SMR:A8MRB2 STRING:A8MRB2
Ensembl:ENST00000373895 ArrayExpress:A8MRB2 Bgee:A8MRB2
Uniprot:A8MRB2
Length = 214
Score = 105 (42.0 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 22/55 (40%), Positives = 34/55 (61%)
Query: 3 YMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQE-KIYK 56
Y+R+S++ KAQN D K E+ + I Q WR+LP+ +K Y + Y E ++YK
Sbjct: 57 YLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYK 111
>UNIPROTKB|Q00059 [details] [associations]
symbol:TFAM "Transcription factor A, mitochondrial"
species:9606 "Homo sapiens" [GO:0031072 "heat shock protein
binding" evidence=IEA] [GO:0033108 "mitochondrial respiratory chain
complex assembly" evidence=IEA] [GO:0070363 "mitochondrial light
strand promoter sense binding" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0006391 "transcription initiation from mitochondrial promoter"
evidence=IDA;TAS] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IMP] [GO:0006390 "transcription from
mitochondrial promoter" evidence=IMP;TAS] [GO:0008301 "DNA binding,
bending" evidence=IDA] [GO:0006356 "regulation of transcription
from RNA polymerase I promoter" evidence=TAS] [GO:0006261
"DNA-dependent DNA replication" evidence=TAS] [GO:0005759
"mitochondrial matrix" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0042645 "mitochondrial nucleoid" evidence=IDA] [GO:0005739
"mitochondrion" evidence=IDA] Reactome:REACT_71 InterPro:IPR009071
Pfam:PF00505 GO:GO:0045893 GO:GO:0003700 GO:GO:0003682
GO:GO:0006261 GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0042645 Reactome:REACT_1788
GO:GO:0006356 GO:GO:0033108 Pfam:PF09011 GO:GO:0006391 CTD:7019
eggNOG:NOG297801 HOGENOM:HOG000139423 HOVERGEN:HBG106674 KO:K11830
GO:GO:0070363 EMBL:M62810 EMBL:EU279428 EMBL:BT019658 EMBL:BT019659
EMBL:AK312558 EMBL:AB451241 EMBL:AB451366 EMBL:AC023170
EMBL:BC126366 EMBL:X64269 IPI:IPI00020928 PIR:JC1496
RefSeq:NP_003192.1 UniGene:Hs.594250 PDB:3FGH PDB:3TMM PDB:3TQ6
PDBsum:3FGH PDBsum:3TMM PDBsum:3TQ6 ProteinModelPortal:Q00059
SMR:Q00059 IntAct:Q00059 STRING:Q00059 PhosphoSite:Q00059
DMDM:417324 PaxDb:Q00059 PRIDE:Q00059 DNASU:7019
Ensembl:ENST00000487519 GeneID:7019 KEGG:hsa:7019 UCSC:uc001jkf.3
GeneCards:GC10P060146 HGNC:HGNC:11741 HPA:HPA040648 MIM:600438
neXtProt:NX_Q00059 PharmGKB:PA36458 InParanoid:Q00059 OMA:YENEMKS
OrthoDB:EOG4KKZ4D PhylomeDB:Q00059 ChiTaRS:TFAM
EvolutionaryTrace:Q00059 GenomeRNAi:7019 NextBio:27419
ArrayExpress:Q00059 Bgee:Q00059 CleanEx:HS_TFAM
Genevestigator:Q00059 GermOnline:ENSG00000108064 Uniprot:Q00059
Length = 246
Score = 105 (42.0 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 22/55 (40%), Positives = 34/55 (61%)
Query: 3 YMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQE-KIYK 56
Y+R+S++ KAQN D K E+ + I Q WR+LP+ +K Y + Y E ++YK
Sbjct: 57 YLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYK 111
>MGI|MGI:107810 [details] [associations]
symbol:Tfam "transcription factor A, mitochondrial"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=ISO] [GO:0003682 "chromatin binding" evidence=ISO]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISO;TAS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=TAS]
[GO:0005739 "mitochondrion" evidence=ISO;IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0006390 "transcription from mitochondrial promoter"
evidence=ISO] [GO:0006391 "transcription initiation from
mitochondrial promoter" evidence=ISO] [GO:0008301 "DNA binding,
bending" evidence=ISO] [GO:0031072 "heat shock protein binding"
evidence=ISO] [GO:0033108 "mitochondrial respiratory chain complex
assembly" evidence=IMP] [GO:0042645 "mitochondrial nucleoid"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0070363 "mitochondrial light
strand promoter sense binding" evidence=ISO] InterPro:IPR009071
EMBL:U57939 MGI:MGI:107810 Pfam:PF00505 GO:GO:0045893 GO:GO:0003700
GO:GO:0003682 GO:GO:0005667 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0042645
GO:GO:0033108 Pfam:PF09011 GO:GO:0006391 CTD:7019 eggNOG:NOG297801
HOGENOM:HOG000139423 HOVERGEN:HBG106674 KO:K11830 GO:GO:0070363
OMA:YENEMKS OrthoDB:EOG4KKZ4D ChiTaRS:TFAM EMBL:U63858
EMBL:BC001987 EMBL:BC083084 EMBL:AK004857 EMBL:AK050446
EMBL:AK167348 EMBL:AK167777 EMBL:AK169808 EMBL:U63712 EMBL:L07107
IPI:IPI00112822 IPI:IPI00230512 PIR:I49745 RefSeq:NP_033386.1
UniGene:Mm.229292 ProteinModelPortal:P40630 SMR:P40630
IntAct:P40630 STRING:P40630 PhosphoSite:P40630 PaxDb:P40630
PRIDE:P40630 Ensembl:ENSMUST00000092430 Ensembl:ENSMUST00000105432
Ensembl:ENSMUST00000121685 GeneID:21780 KEGG:mmu:21780
UCSC:uc007fol.1 UCSC:uc007fom.1 GeneTree:ENSGT00440000039001
InParanoid:P40630 NextBio:301118 Bgee:P40630 CleanEx:MM_TFAM
Genevestigator:P40630 GermOnline:ENSMUSG00000003923 Uniprot:P40630
Length = 243
Score = 104 (41.7 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 22/55 (40%), Positives = 35/55 (63%)
Query: 3 YMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQE-KIYK 56
Y+R+S + + KA++ D KL E+ + I +WR+LPE +K Y D++ E K YK
Sbjct: 56 YLRFSTEQLPKFKAKHPDAKLSELVRKIAALWRELPEAEKKVYEADFKAEWKAYK 110
>UNIPROTKB|Q5D144 [details] [associations]
symbol:TFAM "Transcription factor A, mitochondrial"
species:9823 "Sus scrofa" [GO:0008301 "DNA binding, bending"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006390
"transcription from mitochondrial promoter" evidence=ISS]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0042645 "mitochondrial nucleoid" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0006391
"transcription initiation from mitochondrial promoter"
evidence=ISS] [GO:0070363 "mitochondrial light strand promoter
sense binding" evidence=ISS] [GO:0033108 "mitochondrial respiratory
chain complex assembly" evidence=IEA] InterPro:IPR009071
Pfam:PF00505 GO:GO:0045893 GO:GO:0003700 GO:GO:0003682
GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0042645 GO:GO:0033108 Pfam:PF09011
HSSP:P63159 GO:GO:0006391 CTD:7019 eggNOG:NOG297801
HOGENOM:HOG000139423 HOVERGEN:HBG106674 KO:K11830 GO:GO:0070363
OrthoDB:EOG4KKZ4D EMBL:AY923074 RefSeq:NP_001123683.1
UniGene:Ssc.48086 UniGene:Ssc.78474 ProteinModelPortal:Q5D144
STRING:Q5D144 GeneID:397279 KEGG:ssc:397279 Uniprot:Q5D144
Length = 246
Score = 102 (41.0 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 21/55 (38%), Positives = 35/55 (63%)
Query: 3 YMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQE-KIYK 56
Y+R+S++ KAQN D K E+ K I ++WR+LP+ +K Y + Y + ++YK
Sbjct: 57 YVRFSKEQLPIFKAQNPDAKNSELIKKIAELWRELPDSEKKIYEDAYRADWQVYK 111
>UNIPROTKB|E1BA21 [details] [associations]
symbol:TFAM "Transcription factor A, mitochondrial"
species:9913 "Bos taurus" [GO:0070363 "mitochondrial light strand
promoter sense binding" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0042645 "mitochondrial nucleoid" evidence=IEA] [GO:0033108
"mitochondrial respiratory chain complex assembly" evidence=IEA]
[GO:0006391 "transcription initiation from mitochondrial promoter"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0045893 GO:GO:0003682
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0042645 GO:GO:0033108 Pfam:PF09011 GO:GO:0006391
IPI:IPI00707168 UniGene:Bt.102328 GO:GO:0070363 OMA:YENEMKS
GeneTree:ENSGT00440000039001 EMBL:DAAA02062260 EMBL:DAAA02062261
Ensembl:ENSBTAT00000052511 Uniprot:E1BA21
Length = 246
Score = 101 (40.6 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 21/55 (38%), Positives = 35/55 (63%)
Query: 3 YMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQE-KIYK 56
Y+R+S++ KAQN D K E+ K I ++WR+LP+ +K Y + Y + ++YK
Sbjct: 57 YVRFSKEQLPIFKAQNPDAKNSELIKKIAKLWRELPDSEKKIYEDAYRADWQVYK 111
>UNIPROTKB|Q0II87 [details] [associations]
symbol:TFAM "Transcription factor A, mitochondrial"
species:9913 "Bos taurus" [GO:0008301 "DNA binding, bending"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006390
"transcription from mitochondrial promoter" evidence=ISS]
[GO:0042645 "mitochondrial nucleoid" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0006391 "transcription
initiation from mitochondrial promoter" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0070363 "mitochondrial light strand promoter sense binding"
evidence=ISS] InterPro:IPR009071 Pfam:PF00505 GO:GO:0045893
GO:GO:0003700 GO:GO:0003682 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0042645
Pfam:PF09011 GO:GO:0006391 EMBL:BC122754 IPI:IPI00707168
RefSeq:NP_001029188.2 UniGene:Bt.102328 ProteinModelPortal:Q0II87
STRING:Q0II87 PRIDE:Q0II87 GeneID:510059 KEGG:bta:510059 CTD:7019
eggNOG:NOG297801 HOGENOM:HOG000139423 HOVERGEN:HBG106674
InParanoid:Q0II87 KO:K11830 NextBio:20869256 GO:GO:0070363
Uniprot:Q0II87
Length = 246
Score = 101 (40.6 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 21/55 (38%), Positives = 35/55 (63%)
Query: 3 YMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQE-KIYK 56
Y+R+S++ KAQN D K E+ K I ++WR+LP+ +K Y + Y + ++YK
Sbjct: 57 YVRFSKEQLPIFKAQNPDAKNSELIKKIAKLWRELPDSEKKIYEDAYRADWQVYK 111
>SGD|S000004676 [details] [associations]
symbol:ABF2 "Mitochondrial DNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0005739 "mitochondrion"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0090139
"mitochondrial DNA packaging" evidence=IMP] [GO:0000001
"mitochondrion inheritance" evidence=IMP] [GO:0000002
"mitochondrial genome maintenance" evidence=IMP] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0000262 "mitochondrial chromosome"
evidence=IDA] [GO:0008301 "DNA binding, bending" evidence=IDA]
[GO:0042645 "mitochondrial nucleoid" evidence=IDA]
InterPro:IPR009071 SGD:S000004676 Pfam:PF00505 GO:GO:0005634
EMBL:M73753 EMBL:AJ223169 EMBL:Z48952 EMBL:AY557967 EMBL:BK006946
PIR:A41302 RefSeq:NP_013788.1 ProteinModelPortal:Q02486 SMR:Q02486
DIP:DIP-5492N IntAct:Q02486 MINT:MINT-505363 STRING:Q02486
PaxDb:Q02486 PeptideAtlas:Q02486 EnsemblFungi:YMR072W GeneID:855094
KEGG:sce:YMR072W CYGD:YMR072w eggNOG:COG5648
GeneTree:ENSGT00680000100562 OMA:FHESSKP OrthoDB:EOG483HF0
NextBio:978405 Genevestigator:Q02486 GermOnline:YMR072W
GO:GO:0000262 GO:GO:0008301 GO:GO:0090139 GO:GO:0000001
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Uniprot:Q02486
Length = 183
Score = 97 (39.2 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 17/50 (34%), Positives = 33/50 (66%)
Query: 2 PYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQ 51
P+++Y+ +V QV AQ+ D ++ KIIG W+ L + K +Y+++Y++
Sbjct: 122 PFIKYANEVRSQVFAQHPDKSQLDLMKIIGDKWQSLDQSIKDKYIQEYKK 171
>UNIPROTKB|Q4H0T5 [details] [associations]
symbol:TFAM "Transcription factor A, mitochondrial"
species:122765 "Trachypithecus cristatus" [GO:0003682 "chromatin
binding" evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006390
"transcription from mitochondrial promoter" evidence=ISS]
[GO:0006391 "transcription initiation from mitochondrial promoter"
evidence=ISS] [GO:0008301 "DNA binding, bending" evidence=ISS]
[GO:0042645 "mitochondrial nucleoid" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0070363 "mitochondrial light strand promoter sense binding"
evidence=ISS] InterPro:IPR009071 Pfam:PF00505 GO:GO:0045893
GO:GO:0003700 GO:GO:0003682 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0042645
Pfam:PF09011 GO:GO:0006391 HOVERGEN:HBG106674 GO:GO:0070363
EMBL:AJ830015 ProteinModelPortal:Q4H0T5 PRIDE:Q4H0T5 Uniprot:Q4H0T5
Length = 246
Score = 96 (38.9 bits), Expect = 0.00017, P = 0.00017
Identities = 19/55 (34%), Positives = 35/55 (63%)
Query: 3 YMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQE-KIYK 56
Y+R+S++ KA+N D K E+ + I ++WR+LP+ +K Y + Y + ++YK
Sbjct: 57 YLRFSKEQLPIFKAENPDAKPTELIRRIAKLWRELPDSKKKIYQDAYRADWQVYK 111
>SGD|S000001515 [details] [associations]
symbol:IXR1 "Protein that binds DNA intrastrand cross-links
formed by cisplatin" species:4932 "Saccharomyces cerevisiae"
[GO:0043565 "sequence-specific DNA binding" evidence=IDA]
[GO:0000790 "nuclear chromatin" evidence=IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0071456 "cellular response to hypoxia" evidence=IGI;IMP]
[GO:0006281 "DNA repair" evidence=IGI] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0003684 "damaged DNA binding" evidence=IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR009071 SGD:S000001515 Pfam:PF00505
GO:GO:0005634 GO:GO:0003684 GO:GO:0043565 GO:GO:0006281
GO:GO:0071456 GO:GO:0006351 EMBL:BK006944 GO:GO:0000122
eggNOG:COG5648 GeneTree:ENSGT00680000100562 OrthoDB:EOG483HF0
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:X71622 EMBL:L16900 EMBL:Z28032 PIR:S37849 RefSeq:NP_012893.3
RefSeq:NP_012897.3 ProteinModelPortal:P33417 SMR:P33417
IntAct:P33417 STRING:P33417 PaxDb:P33417 PeptideAtlas:P33417
EnsemblFungi:YKL032C GeneID:853836 GeneID:853840 KEGG:sce:YKL028W
KEGG:sce:YKL032C CYGD:YKL032c KO:K03136 NextBio:975043
Genevestigator:P33417 GermOnline:YKL032C Uniprot:P33417
Length = 597
Score = 101 (40.6 bits), Expect = 0.00020, P = 0.00020
Identities = 19/50 (38%), Positives = 33/50 (66%)
Query: 2 PYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQ 51
P++++++++ V +N D L EI KIIG+ WR+L +K EY E Y++
Sbjct: 440 PFIQFTQEIRPTVVKENPDKGLIEITKIIGERWRELDPAKKAEYTETYKK 489
>UNIPROTKB|P0CB47 [details] [associations]
symbol:UBTFL1 "Putative upstream-binding factor 1-like
protein 1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0007275 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
HOGENOM:HOG000232068 EMBL:AP000827 IPI:IPI00921220
RefSeq:NP_001137447.1 UniGene:Hs.719885 ProteinModelPortal:P0CB47
SMR:P0CB47 STRING:P0CB47 PhosphoSite:P0CB47 DMDM:263545802
PaxDb:P0CB47 PRIDE:P0CB47 GeneID:642623 KEGG:hsa:642623
UCSC:uc010rub.2 CTD:642623 GeneCards:GC11P089819 HGNC:HGNC:14533
MIM:613696 neXtProt:NX_P0CB47 PharmGKB:PA164727456 eggNOG:NOG260929
OrthoDB:EOG47H5Q8 GenomeRNAi:642623 NextBio:114002 Uniprot:P0CB47
Length = 393
Score = 97 (39.2 bits), Expect = 0.00030, P = 0.00030
Identities = 16/51 (31%), Positives = 31/51 (60%)
Query: 3 YMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEK 53
Y R+ ++ W Q ++ E+ KI+ + +R+LPE K +Y++D+ +EK
Sbjct: 107 YNRFFKESWPQYSQMYPGMRSQELTKILSKKYRELPEQMKQKYIQDFRKEK 157
>TAIR|locus:2136103 [details] [associations]
symbol:3xHMG-box1 "3xHigh Mobility Group-box1"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] InterPro:IPR009071
Pfam:PF00505 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
EMBL:AL161531 GO:GO:0003677 GO:GO:0003700 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:AF080120 EMBL:AL049876 HSSP:P07155 EMBL:AY133687 EMBL:AJ630485
EMBL:AY568657 IPI:IPI00533286 PIR:T01926 PIR:T08187
RefSeq:NP_192846.1 UniGene:At.33587 ProteinModelPortal:Q9T012
SMR:Q9T012 EnsemblPlants:AT4G11080.1 GeneID:826709
KEGG:ath:AT4G11080 TAIR:At4g11080 HOGENOM:HOG000238964
InParanoid:Q9T012 KO:K09273 OMA:CKDQWNE PhylomeDB:Q9T012
ProtClustDB:CLSN2686000 Genevestigator:Q9T012 Uniprot:Q9T012
Length = 446
Score = 96 (38.9 bits), Expect = 0.00047, P = 0.00047
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 2 PYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEK 53
PY+ + + W++VK QN + E I+G W+ + ++K Y E Y+ +K
Sbjct: 135 PYILWCKDNWNEVKKQNPEADFKETSNILGAKWKGISAEEKKPYEEKYQADK 186
>UNIPROTKB|C9JQA7 [details] [associations]
symbol:HMG20B "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member
1-related" species:9606 "Homo sapiens" [GO:0033234 "negative
regulation of protein sumoylation" evidence=IEA] [GO:0045666
"positive regulation of neuron differentiation" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AC005786 HOGENOM:HOG000247029
HGNC:HGNC:5002 ChiTaRS:HMG20B EMBL:AC116968 IPI:IPI00878211
ProteinModelPortal:C9JQA7 SMR:C9JQA7 STRING:C9JQA7
Ensembl:ENST00000453933 ArrayExpress:C9JQA7 Bgee:C9JQA7
Uniprot:C9JQA7
Length = 142
Score = 85 (35.0 bits), Expect = 0.00073, P = 0.00072
Identities = 16/51 (31%), Positives = 31/51 (60%)
Query: 3 YMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEK 53
Y+R+ + +Q++ ++ DL EI K++G W L +K Y+++ E+EK
Sbjct: 77 YVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYLDEAEREK 127
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.136 0.428 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 56 56 0.00091 102 3 11 22 0.37 28
29 0.42 27
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 27
No. of states in DFA: 479 (51 KB)
Total size of DFA: 100 KB (2072 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 7.72u 0.14s 7.86t Elapsed: 00:00:00
Total cpu time: 7.72u 0.14s 7.86t Elapsed: 00:00:00
Start: Thu Aug 15 11:39:50 2013 End: Thu Aug 15 11:39:50 2013