BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5909
(130 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9W2Q1|RX_DROME Retinal homeobox protein Rx OS=Drosophila melanogaster GN=Rx PE=2
SV=2
Length = 873
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/76 (73%), Positives = 57/76 (75%), Gaps = 13/76 (17%)
Query: 23 TVDSDLEIDDDKCSRGGSLSPSLSPVDKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYS 82
T SD E DD C+ KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYS
Sbjct: 511 TSGSDDEGQDDNCA-------------KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYS 557
Query: 83 REELAMKVNLPEVRVQ 98
REELAMKVNLPEVRVQ
Sbjct: 558 REELAMKVNLPEVRVQ 573
>sp|Q9PVX0|RX2_CHICK Retinal homeobox protein Rx2 OS=Gallus gallus GN=RX2 PE=2 SV=1
Length = 317
Score = 108 bits (271), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 53/61 (86%), Positives = 53/61 (86%)
Query: 38 GGSLSPSLSPVDKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRV 97
GG PS KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRV
Sbjct: 107 GGDGKPSDEEQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRV 166
Query: 98 Q 98
Q
Sbjct: 167 Q 167
>sp|Q9PVY0|RX1_CHICK Retinal homeobox protein Rx1 OS=Gallus gallus GN=RX1 PE=2 SV=1
Length = 228
Score = 105 bits (263), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 49/49 (100%), Positives = 49/49 (100%)
Query: 50 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 98
KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ
Sbjct: 33 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 81
>sp|O42356|RX1_DANRE Retinal homeobox protein Rx1 OS=Danio rerio GN=rx1 PE=2 SV=2
Length = 330
Score = 105 bits (263), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 49/50 (98%), Positives = 49/50 (98%)
Query: 50 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQA 99
KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ
Sbjct: 134 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQV 183
>sp|Q9I9D5|RX1_ASTFA Retinal homeobox protein Rx1 OS=Astyanax fasciatus GN=rx1 PE=2 SV=1
Length = 334
Score = 105 bits (263), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 49/50 (98%), Positives = 49/50 (98%)
Query: 50 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQA 99
KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ
Sbjct: 139 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQV 188
>sp|O42567|RXB_XENLA Retinal homeobox protein Rx-B OS=Xenopus laevis GN=rax-b PE=2 SV=2
Length = 325
Score = 105 bits (262), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 49/49 (100%), Positives = 49/49 (100%)
Query: 50 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 98
KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ
Sbjct: 127 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 175
>sp|O42357|RX2_DANRE Retinal homeobox protein Rx2 OS=Danio rerio GN=rx2 PE=2 SV=1
Length = 327
Score = 105 bits (262), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 49/50 (98%), Positives = 49/50 (98%)
Query: 50 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQA 99
KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ
Sbjct: 132 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQV 181
>sp|O42201|RXA_XENLA Retinal homeobox protein Rx-A OS=Xenopus laevis GN=rax-a PE=2 SV=2
Length = 322
Score = 105 bits (262), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 49/50 (98%), Positives = 49/50 (98%)
Query: 50 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQA 99
KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ
Sbjct: 127 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQV 176
>sp|O42358|RX3_DANRE Retinal homeobox protein Rx3 OS=Danio rerio GN=rx3 PE=2 SV=1
Length = 292
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/62 (83%), Positives = 55/62 (88%), Gaps = 2/62 (3%)
Query: 38 GGSLSPSLSPVDKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRV 97
GG LS +P KKKHRRNRTTFTT+QLHELERAFEKSHYPDVYSREELA+KVNLPEVRV
Sbjct: 93 GGKLSDDENP--KKKHRRNRTTFTTFQLHELERAFEKSHYPDVYSREELALKVNLPEVRV 150
Query: 98 QA 99
Q
Sbjct: 151 QV 152
>sp|Q9JLT7|RX_RAT Retinal homeobox protein Rx OS=Rattus norvegicus GN=Rax PE=2 SV=1
Length = 342
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 48/49 (97%), Positives = 48/49 (97%)
Query: 50 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 98
KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELA KVNLPEVRVQ
Sbjct: 134 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQ 182
>sp|O35602|RX_MOUSE Retinal homeobox protein Rx OS=Mus musculus GN=Rax PE=2 SV=2
Length = 342
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 48/49 (97%), Positives = 48/49 (97%)
Query: 50 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 98
KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELA KVNLPEVRVQ
Sbjct: 133 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQ 181
>sp|Q9Y2V3|RX_HUMAN Retinal homeobox protein Rx OS=Homo sapiens GN=RAX PE=1 SV=2
Length = 346
Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 48/49 (97%), Positives = 48/49 (97%)
Query: 50 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 98
KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELA KVNLPEVRVQ
Sbjct: 133 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQ 181
>sp|Q9I9A2|RX2_ORYLA Retinal homeobox protein Rx2 OS=Oryzias latipes GN=rx2 PE=2 SV=1
Length = 327
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 48/50 (96%), Positives = 48/50 (96%)
Query: 50 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQA 99
KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELA KVNLPEVRVQ
Sbjct: 134 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELATKVNLPEVRVQV 183
>sp|O97039|RX_DUGJA Retinal homeobox protein Rax (Fragment) OS=Dugesia japonica GN=RAX
PE=2 SV=1
Length = 268
Score = 102 bits (254), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 56/103 (54%), Positives = 69/103 (66%), Gaps = 13/103 (12%)
Query: 10 EQAVSDLRRKPSDTVDSDLEIDDDKCSRGGS-LSPSLSPVDK------------KKHRRN 56
E + D +K +V++ + +C + S SP++S D+ KKHRRN
Sbjct: 31 ENEICDSYQKKDISVNNRELLMVKRCPKDSSEQSPAISEADETESSPDQLSNCNKKHRRN 90
Query: 57 RTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQA 99
RTTFTTYQLHELERAFEKSHYPDVYSREELAMK++LPEVRVQ
Sbjct: 91 RTTFTTYQLHELERAFEKSHYPDVYSREELAMKISLPEVRVQV 133
>sp|A2T711|RAX2_PANTR Retina and anterior neural fold homeobox protein 2 OS=Pan
troglodytes GN=RAX2 PE=3 SV=1
Length = 184
Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 45/51 (88%), Positives = 47/51 (92%)
Query: 48 VDKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 98
KKKHRRNRTTFTTYQLH+LERAFE SHYPDVYSREELA KV+LPEVRVQ
Sbjct: 22 APKKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQ 72
>sp|Q96IS3|RAX2_HUMAN Retina and anterior neural fold homeobox protein 2 OS=Homo
sapiens GN=RAX2 PE=1 SV=1
Length = 184
Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 45/51 (88%), Positives = 47/51 (92%)
Query: 48 VDKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 98
KKKHRRNRTTFTTYQLH+LERAFE SHYPDVYSREELA KV+LPEVRVQ
Sbjct: 22 APKKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQ 72
>sp|A1YG25|RAX2_PANPA Retina and anterior neural fold homeobox protein 2 OS=Pan
paniscus GN=RAX2 PE=3 SV=1
Length = 184
Score = 99.4 bits (246), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 45/51 (88%), Positives = 47/51 (92%)
Query: 48 VDKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 98
KKKHRRNRTTFTTYQLH+LERAFE SHYPDVYSREELA KV+LPEVRVQ
Sbjct: 22 APKKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQ 72
>sp|A1YEV8|RAX2_GORGO Retina and anterior neural fold homeobox protein 2 OS=Gorilla
gorilla gorilla GN=RAX2 PE=3 SV=1
Length = 184
Score = 98.6 bits (244), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 45/49 (91%), Positives = 47/49 (95%)
Query: 50 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 98
KKKHRRNRTTFTTYQLH+LERAFE SHYPDVYSREELA KV+LPEVRVQ
Sbjct: 24 KKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQ 72
>sp|Q7YRX0|RAX2_BOVIN Retina and anterior neural fold homeobox protein 2 OS=Bos taurus
GN=RAX2 PE=2 SV=1
Length = 184
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/49 (91%), Positives = 47/49 (95%)
Query: 50 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 98
KKKHRRNRTTFTTYQLH+LERAFE SHYPDVYSREELA KV+LPEVRVQ
Sbjct: 24 KKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQ 72
>sp|O42115|ARX_DANRE Aristaless-related homeobox protein OS=Danio rerio GN=arx PE=2 SV=1
Length = 453
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/126 (41%), Positives = 74/126 (58%), Gaps = 11/126 (8%)
Query: 10 EQAVSDLRRKPSD--TVDSDLEIDDDK---CSRGGSLSPSLSPVDKKKHRRNRTTFTTYQ 64
E+A D P D ++ +D ++ D + C GS S + K+K RR RTTFT+YQ
Sbjct: 169 EEACGDNSLSPKDEESLHNDGDVKDGEDSVCLSAGS--DSEEGMLKRKQRRYRTTFTSYQ 226
Query: 65 LHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQDIEFNIRVPEPSHP 124
L ELERAF+K+HYPDV++REELAM+++L E RVQ +++ + +HP
Sbjct: 227 LEELERAFQKTHYPDVFTREELAMRLDLTEARVQ----VWFQNRRAKWRKREKAGVQAHP 282
Query: 125 IGLPAP 130
GLP P
Sbjct: 283 TGLPFP 288
>sp|Q94398|HM08_CAEEL Homeobox protein ceh-8 OS=Caenorhabditis elegans GN=ceh-8 PE=4 SV=3
Length = 276
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/51 (74%), Positives = 43/51 (84%)
Query: 48 VDKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 98
+ KK RRNRTTFTT+QLH LE AF+K+HYPDVY+RE LA KV LPEVRVQ
Sbjct: 55 IADKKQRRNRTTFTTFQLHALEAAFDKTHYPDVYARETLAAKVQLPEVRVQ 105
>sp|A6YP92|ARX_RAT Homeobox protein ARX OS=Rattus norvegicus GN=Arx PE=2 SV=1
Length = 566
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 35/49 (71%), Positives = 44/49 (89%)
Query: 50 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 98
K+K RR RTTFT+YQL ELERAF+K+HYPDV++REELAM+++L E RVQ
Sbjct: 329 KRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQ 377
>sp|Q96QS3|ARX_HUMAN Homeobox protein ARX OS=Homo sapiens GN=ARX PE=1 SV=1
Length = 562
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 35/49 (71%), Positives = 44/49 (89%)
Query: 50 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 98
K+K RR RTTFT+YQL ELERAF+K+HYPDV++REELAM+++L E RVQ
Sbjct: 325 KRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQ 373
>sp|O35085|ARX_MOUSE Homeobox protein ARX OS=Mus musculus GN=Arx PE=2 SV=3
Length = 564
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 35/49 (71%), Positives = 44/49 (89%)
Query: 50 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 98
K+K RR RTTFT+YQL ELERAF+K+HYPDV++REELAM+++L E RVQ
Sbjct: 327 KRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQ 375
>sp|Q4LAL6|ALX4_BOVIN Homeobox protein aristaless-like 4 OS=Bos taurus GN=ALX4 PE=2 SV=1
Length = 397
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 34/50 (68%), Positives = 43/50 (86%)
Query: 49 DKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 98
+K K RRNRTTFT+YQL ELE+ F+K+HYPDVY+RE+LAM+ +L E RVQ
Sbjct: 196 NKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQ 245
>sp|O35137|ALX4_MOUSE Homeobox protein aristaless-like 4 OS=Mus musculus GN=Alx4 PE=1
SV=1
Length = 399
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 34/50 (68%), Positives = 43/50 (86%)
Query: 49 DKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 98
+K K RRNRTTFT+YQL ELE+ F+K+HYPDVY+RE+LAM+ +L E RVQ
Sbjct: 198 NKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQ 247
>sp|Q9H161|ALX4_HUMAN Homeobox protein aristaless-like 4 OS=Homo sapiens GN=ALX4 PE=1
SV=2
Length = 411
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 34/50 (68%), Positives = 43/50 (86%)
Query: 49 DKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 98
+K K RRNRTTFT+YQL ELE+ F+K+HYPDVY+RE+LAM+ +L E RVQ
Sbjct: 210 NKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQ 259
>sp|O70137|ALX3_MOUSE Homeobox protein aristaless-like 3 OS=Mus musculus GN=Alx3 PE=2
SV=1
Length = 343
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 63/107 (58%), Gaps = 12/107 (11%)
Query: 1 ENSGNSSSDEQAVSDLRRKPSDTVDSDLEIDDDKCSRGGSLSPSLSPV---------DKK 51
E + ++S Q D R P D S+++ C SLS LSP K
Sbjct: 95 EKASKAASFPQLPVDCRGGPRDG-PSNVQASPGPCL--ASLSVPLSPGLPDSMELAKTKS 151
Query: 52 KHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 98
K RRNRTTF+T+QL ELE+ F+K+HYPDVY+RE+LA++ +L E RVQ
Sbjct: 152 KKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQ 198
>sp|Q26657|ALX_STRPU Aristaless homeobox protein (Fragment) OS=Strongylocentrotus
purpuratus GN=ALX PE=2 SV=2
Length = 327
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/49 (73%), Positives = 43/49 (87%)
Query: 50 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 98
K+K RR RTTFT+YQL ELERAF K+HYPDV++REELAM+V+L E RVQ
Sbjct: 209 KRKQRRYRTTFTSYQLEELERAFCKTHYPDVFTREELAMRVDLTEARVQ 257
>sp|Q06453|AL_DROME Homeobox protein aristaless OS=Drosophila melanogaster GN=al PE=1
SV=2
Length = 408
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 54/96 (56%), Gaps = 14/96 (14%)
Query: 3 SGNSSSDEQAVSDLRRKPSDTVDSDLEIDDDKCSRGGSLSPSLSPVDKKKHRRNRTTFTT 62
SG + S S P +SD E D+ K+K RR RTTFT+
Sbjct: 49 SGGAPSGASGASGGTNSPVSDGNSDCEADEY--------------APKRKQRRYRTTFTS 94
Query: 63 YQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 98
+QL ELE+AF ++HYPDV++REELAMK+ L E R+Q
Sbjct: 95 FQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQ 130
>sp|O95076|ALX3_HUMAN Homeobox protein aristaless-like 3 OS=Homo sapiens GN=ALX3 PE=1
SV=2
Length = 343
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 63/105 (60%), Gaps = 8/105 (7%)
Query: 1 ENSGNSSSDEQAVSDLRRKPSDTVDSDLEIDDDKC--SRGGSLSPSLS-----PVDKKKH 53
E + ++S Q D R P D S+L+ C S LSP L +K K
Sbjct: 95 EKTSKAASFPQLPLDCRGGPRDG-PSNLQGSPGPCLASLHLPLSPGLPDSMELAKNKSKK 153
Query: 54 RRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 98
RRNRTTF+T+QL ELE+ F+K+HYPDVY+RE+LA++ +L E RVQ
Sbjct: 154 RRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQ 198
>sp|Q9GMA3|VSX1_BOVIN Visual system homeobox 1 OS=Bos taurus GN=VSX1 PE=2 SV=1
Length = 365
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 58/87 (66%), Gaps = 7/87 (8%)
Query: 14 SDLRRKPSDTVDSDLE--IDDDKCSRGGSLSPSLSPVDKKKHRRNRTTFTTYQLHELERA 71
S R+K S++V + E +D+ R S +PS K+K RR+RT FT +QL ELE+A
Sbjct: 128 SAARQKRSESVSTSDEDSPSEDRSDRKASPAPS-----KRKKRRHRTVFTAHQLEELEKA 182
Query: 72 FEKSHYPDVYSREELAMKVNLPEVRVQ 98
F ++HYPDVY+RE LAMK LPE R+Q
Sbjct: 183 FSEAHYPDVYAREMLAMKTELPEDRIQ 209
>sp|Q645N4|PAX3A_XENLA Paired box protein Pax-3-A OS=Xenopus laevis GN=pax3-a PE=2 SV=1
Length = 484
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 54/90 (60%), Gaps = 14/90 (15%)
Query: 50 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVEL 109
K+K RR+RTTFT QL ELERAFE++HYPD+Y+REELA + L E RVQ +++S
Sbjct: 217 KRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQ----VWFSNRR 272
Query: 110 ----------QDIEFNIRVPEPSHPIGLPA 129
Q + FN +P P +PA
Sbjct: 273 ARWRKQAGANQLMAFNHLIPGAFPPAAMPA 302
>sp|Q0IH87|PAX3B_XENLA Paired box protein Pax-3-B OS=Xenopus laevis GN=pax3-b PE=2 SV=2
Length = 483
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 54/90 (60%), Gaps = 14/90 (15%)
Query: 50 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVEL 109
K+K RR+RTTFT QL ELERAFE++HYPD+Y+REELA + L E RVQ +++S
Sbjct: 216 KRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQ----VWFSNRR 271
Query: 110 ----------QDIEFNIRVPEPSHPIGLPA 129
Q + FN +P P +PA
Sbjct: 272 ARWRKQAGANQLMAFNHLIPGAFPPTAMPA 301
>sp|Q28DP6|PAX3_XENTR Paired box protein Pax-3 OS=Xenopus tropicalis GN=pax3 PE=2 SV=2
Length = 461
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 54/90 (60%), Gaps = 14/90 (15%)
Query: 50 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVEL 109
K+K RR+RTTFT QL ELERAFE++HYPD+Y+REELA + L E RVQ +++S
Sbjct: 193 KRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQ----VWFSNRR 248
Query: 110 ----------QDIEFNIRVPEPSHPIGLPA 129
Q + FN +P P +PA
Sbjct: 249 ARWRKQAGANQLMAFNHLIPGAFPPAAMPA 278
>sp|O35690|PHX2B_MOUSE Paired mesoderm homeobox protein 2B OS=Mus musculus GN=Phox2b PE=1
SV=1
Length = 314
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 42/50 (84%)
Query: 49 DKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 98
+K+K RR RTTFT+ QL ELER F ++HYPD+Y+REELA+K++L E RVQ
Sbjct: 94 EKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQ 143
>sp|Q99453|PHX2B_HUMAN Paired mesoderm homeobox protein 2B OS=Homo sapiens GN=PHOX2B PE=1
SV=2
Length = 314
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 42/50 (84%)
Query: 49 DKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 98
+K+K RR RTTFT+ QL ELER F ++HYPD+Y+REELA+K++L E RVQ
Sbjct: 94 EKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQ 143
>sp|P24610|PAX3_MOUSE Paired box protein Pax-3 OS=Mus musculus GN=Pax3 PE=1 SV=2
Length = 479
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 40/49 (81%)
Query: 50 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 98
K+K RR+RTTFT QL ELERAFE++HYPD+Y+REELA + L E RVQ
Sbjct: 216 KRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQ 264
>sp|P23760|PAX3_HUMAN Paired box protein Pax-3 OS=Homo sapiens GN=PAX3 PE=1 SV=2
Length = 479
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 40/49 (81%)
Query: 50 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 98
K+K RR+RTTFT QL ELERAFE++HYPD+Y+REELA + L E RVQ
Sbjct: 216 KRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQ 264
>sp|A6NNA5|DRGX_HUMAN Dorsal root ganglia homeobox protein OS=Homo sapiens GN=DRGX PE=2
SV=1
Length = 263
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/49 (65%), Positives = 39/49 (79%)
Query: 50 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 98
++K RRNRTTFT QL LE F ++HYPDV++REELAMK+NL E RVQ
Sbjct: 30 RRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQ 78
>sp|Q62066|PHX2A_MOUSE Paired mesoderm homeobox protein 2A OS=Mus musculus GN=Phox2a PE=2
SV=1
Length = 280
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 42/50 (84%)
Query: 49 DKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 98
+K+K RR RTTFT+ QL ELER F ++HYPD+Y+REELA+K++L E RVQ
Sbjct: 86 EKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQ 135
>sp|Q90277|VSX1_CARAU Visual system homeobox 1 OS=Carassius auratus GN=vsx1 PE=1 SV=1
Length = 341
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/49 (65%), Positives = 41/49 (83%)
Query: 50 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 98
K+K RR+RT FT++QL ELE+AF ++HYPDVY+RE LAMK LPE R+Q
Sbjct: 145 KRKKRRHRTVFTSHQLEELEKAFHEAHYPDVYAREMLAMKTELPEDRIQ 193
>sp|Q8BYH0|DRGX_MOUSE Dorsal root ganglia homeobox protein OS=Mus musculus GN=Drgx PE=1
SV=2
Length = 263
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/49 (65%), Positives = 39/49 (79%)
Query: 50 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 98
++K RRNRTTFT QL LE F ++HYPDV++REELAMK+NL E RVQ
Sbjct: 30 RRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQ 78
>sp|O42250|VSX1_DANRE Visual system homeobox 1 OS=Danio rerio GN=vsx1 PE=1 SV=2
Length = 344
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/49 (65%), Positives = 41/49 (83%)
Query: 50 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 98
K+K RR+RT FT++QL ELE+AF ++HYPDVY+RE LAMK LPE R+Q
Sbjct: 148 KRKKRRHRTVFTSHQLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQ 196
>sp|Q63087|ALX1_RAT ALX homeobox protein 1 OS=Rattus norvegicus GN=Alx1 PE=2 SV=1
Length = 326
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 53/89 (59%), Gaps = 11/89 (12%)
Query: 12 AVSDLRRKPSDTVDSDLEIDD--DKCSRGGSLSPSLSPVDKKKHRRNRTTFTTYQLHELE 69
++LR P + E+D+ DKC S V K RR+RTTFT+ QL ELE
Sbjct: 98 GCNNLRMSPVKGMPEKSELDELGDKCD---------SNVSSSKKRRHRTTFTSLQLEELE 148
Query: 70 RAFEKSHYPDVYSREELAMKVNLPEVRVQ 98
+ F+K+HYPDVY RE+LA++ L E RVQ
Sbjct: 149 KVFQKTHYPDVYVREQLALRTELTEARVQ 177
>sp|O14813|PHX2A_HUMAN Paired mesoderm homeobox protein 2A OS=Homo sapiens GN=PHOX2A PE=1
SV=2
Length = 284
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 42/50 (84%)
Query: 49 DKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 98
+K+K RR RTTFT+ QL ELER F ++HYPD+Y+REELA+K++L E RVQ
Sbjct: 86 EKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQ 135
>sp|Q15699|ALX1_HUMAN ALX homeobox protein 1 OS=Homo sapiens GN=ALX1 PE=1 SV=2
Length = 326
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 52/88 (59%), Gaps = 11/88 (12%)
Query: 13 VSDLRRKPSDTVDSDLEIDD--DKCSRGGSLSPSLSPVDKKKHRRNRTTFTTYQLHELER 70
+ LR P + E+D+ DKC S V K RR+RTTFT+ QL ELE+
Sbjct: 99 CNSLRMSPVKGMQEKGELDELGDKCD---------SNVSSSKKRRHRTTFTSLQLEELEK 149
Query: 71 AFEKSHYPDVYSREELAMKVNLPEVRVQ 98
F+K+HYPDVY RE+LA++ L E RVQ
Sbjct: 150 VFQKTHYPDVYVREQLALRTELTEARVQ 177
>sp|P23759|PAX7_HUMAN Paired box protein Pax-7 OS=Homo sapiens GN=PAX7 PE=2 SV=3
Length = 520
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 53/89 (59%), Gaps = 14/89 (15%)
Query: 50 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVEL 109
K+K RR+RTTFT QL ELE+AFE++HYPD+Y+REELA + L E RVQ +++S
Sbjct: 214 KRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQ----VWFSNRR 269
Query: 110 ----------QDIEFNIRVPEPSHPIGLP 128
Q FN +P P G+P
Sbjct: 270 ARWRKQAGANQLAAFNHLLPGGFPPTGMP 298
>sp|Q62782|PHX2A_RAT Paired mesoderm homeobox protein 2A OS=Rattus norvegicus GN=Phox2a
PE=2 SV=1
Length = 281
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 42/50 (84%)
Query: 49 DKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 98
+K+K RR RTTFT+ QL ELER F ++HYPD+Y+REELA+K++L E RVQ
Sbjct: 86 EKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQ 135
>sp|Q8C8B0|ALX1_MOUSE ALX homeobox protein 1 OS=Mus musculus GN=Alx1 PE=1 SV=1
Length = 326
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 53/88 (60%), Gaps = 11/88 (12%)
Query: 13 VSDLRRKPSDTVDSDLEIDD--DKCSRGGSLSPSLSPVDKKKHRRNRTTFTTYQLHELER 70
++LR P + E+D+ DKC S V K RR+RTTFT+ QL ELE+
Sbjct: 99 CNNLRMSPVKGMPEKSELDELGDKCD---------SNVSSSKKRRHRTTFTSLQLEELEK 149
Query: 71 AFEKSHYPDVYSREELAMKVNLPEVRVQ 98
F+K+HYPDVY RE+LA++ L E RVQ
Sbjct: 150 VFQKTHYPDVYVREQLALRTELTEARVQ 177
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.130 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,227,592
Number of Sequences: 539616
Number of extensions: 2100534
Number of successful extensions: 9538
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 6888
Number of HSP's gapped (non-prelim): 2500
length of query: 130
length of database: 191,569,459
effective HSP length: 96
effective length of query: 34
effective length of database: 139,766,323
effective search space: 4752054982
effective search space used: 4752054982
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)