Query psy5909
Match_columns 130
No_of_seqs 119 out of 1422
Neff 8.1
Searched_HMMs 29240
Date Fri Aug 16 21:22:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5909.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5909hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kt0_A Nanog, homeobox protein 99.9 8.5E-24 2.9E-28 133.3 6.7 67 48-114 17-83 (84)
2 2dmt_A Homeobox protein BARH-l 99.9 1.4E-23 4.9E-28 131.2 6.5 65 49-113 13-77 (80)
3 2dms_A Homeobox protein OTX2; 99.9 4.5E-23 1.5E-27 128.9 7.5 67 50-116 4-70 (80)
4 2cra_A Homeobox protein HOX-B1 99.9 3.3E-23 1.1E-27 126.5 5.0 64 50-113 4-67 (70)
5 2da3_A Alpha-fetoprotein enhan 99.9 3.9E-23 1.3E-27 129.0 5.3 65 49-113 13-77 (80)
6 2dmq_A LIM/homeobox protein LH 99.9 1.3E-22 4.4E-27 126.7 7.5 66 51-116 5-70 (80)
7 2dmu_A Homeobox protein goosec 99.9 6.9E-23 2.4E-27 125.0 6.0 63 51-113 5-67 (70)
8 1nk2_P Homeobox protein VND; h 99.9 1.2E-22 4E-27 126.2 7.1 67 50-116 6-72 (77)
9 2da2_A Alpha-fetoprotein enhan 99.9 5.8E-23 2E-27 125.3 5.1 64 50-113 4-67 (70)
10 1wh5_A ZF-HD homeobox family p 99.9 6.4E-23 2.2E-27 128.3 5.4 61 50-110 14-78 (80)
11 1puf_A HOX-1.7, homeobox prote 99.9 1.7E-22 5.7E-27 125.5 6.6 67 48-114 8-74 (77)
12 1wh7_A ZF-HD homeobox family p 99.9 6.5E-23 2.2E-27 128.2 4.7 60 50-110 14-78 (80)
13 2cue_A Paired box protein PAX6 99.9 1.1E-22 3.7E-27 127.2 5.6 65 51-115 5-69 (80)
14 2da1_A Alpha-fetoprotein enhan 99.9 6.1E-23 2.1E-27 125.2 4.3 64 50-113 4-67 (70)
15 2e1o_A Homeobox protein PRH; D 99.9 1.7E-22 6E-27 123.2 5.9 63 51-113 5-67 (70)
16 2djn_A Homeobox protein DLX-5; 99.9 7.2E-23 2.5E-27 124.9 4.1 64 50-113 4-67 (70)
17 2h1k_A IPF-1, pancreatic and d 99.9 1.8E-22 6.3E-27 120.7 4.8 60 52-111 2-61 (63)
18 1ahd_P Antennapedia protein mu 99.9 1.9E-22 6.6E-27 122.4 4.5 64 53-116 2-65 (68)
19 2vi6_A Homeobox protein nanog; 99.9 1.4E-22 4.9E-27 120.8 3.8 60 52-111 2-61 (62)
20 2hdd_A Protein (engrailed home 99.9 2.1E-22 7.2E-27 119.7 4.3 58 53-110 3-60 (61)
21 3a01_A Homeodomain-containing 99.9 5.8E-22 2E-26 127.2 6.6 67 49-115 13-79 (93)
22 1fjl_A Paired protein; DNA-bin 99.9 3.4E-22 1.2E-26 125.1 5.3 65 49-113 14-78 (81)
23 2da4_A Hypothetical protein DK 99.9 2.1E-22 7E-27 125.9 4.3 63 50-112 5-71 (80)
24 2m0c_A Homeobox protein arista 99.9 5.2E-22 1.8E-26 122.4 5.9 65 50-114 6-70 (75)
25 2l7z_A Homeobox protein HOX-A1 99.9 5.1E-22 1.7E-26 122.1 5.7 64 50-113 4-67 (73)
26 1ig7_A Homeotic protein MSX-1; 99.9 4.5E-22 1.5E-26 117.1 5.0 57 54-110 1-57 (58)
27 1zq3_P PRD-4, homeotic bicoid 99.9 5.7E-22 1.9E-26 120.3 4.9 62 53-114 2-63 (68)
28 1ftt_A TTF-1 HD, thyroid trans 99.9 8.5E-22 2.9E-26 119.5 5.7 63 53-115 2-64 (68)
29 3nar_A ZHX1, zinc fingers and 99.8 4.4E-22 1.5E-26 128.4 4.5 62 50-111 22-83 (96)
30 1b8i_A Ultrabithorax, protein 99.8 6.8E-22 2.3E-26 123.8 5.1 63 51-113 18-80 (81)
31 1jgg_A Segmentation protein EV 99.8 6E-22 2.1E-26 117.4 4.6 58 54-111 2-59 (60)
32 2r5y_A Homeotic protein sex co 99.8 5.5E-22 1.9E-26 126.1 4.0 63 50-112 25-87 (88)
33 1yz8_P Pituitary homeobox 2; D 99.8 2.8E-22 9.4E-27 121.7 2.5 63 52-114 2-64 (68)
34 2dn0_A Zinc fingers and homeob 99.8 1E-21 3.4E-26 121.6 5.0 63 54-116 9-71 (76)
35 2cuf_A FLJ21616 protein; homeo 99.8 2.8E-21 9.6E-26 124.4 6.9 65 50-114 4-83 (95)
36 1bw5_A ISL-1HD, insulin gene e 99.8 8.7E-22 3E-26 118.8 4.1 60 52-111 2-61 (66)
37 2da5_A Zinc fingers and homeob 99.8 3E-21 1E-25 119.3 6.4 59 55-113 9-67 (75)
38 2ly9_A Zinc fingers and homeob 99.8 2.5E-21 8.7E-26 119.2 6.0 64 53-116 6-69 (74)
39 1b72_A Protein (homeobox prote 99.8 1.1E-21 3.6E-26 126.8 4.4 64 51-114 32-95 (97)
40 3rkq_A Homeobox protein NKX-2. 99.8 1.3E-21 4.4E-26 114.9 4.3 57 53-109 2-58 (58)
41 2hi3_A Homeodomain-only protei 99.8 3.9E-21 1.3E-25 118.1 6.1 61 54-114 3-64 (73)
42 1uhs_A HOP, homeodomain only p 99.8 3.6E-21 1.2E-25 117.9 5.7 61 54-114 2-63 (72)
43 3a02_A Homeobox protein arista 99.8 1.5E-21 5.1E-26 115.7 3.7 58 56-113 2-59 (60)
44 2k40_A Homeobox expressed in E 99.8 2.6E-21 8.7E-26 117.0 4.6 60 54-113 2-61 (67)
45 1akh_A Protein (mating-type pr 99.8 1.5E-21 5.2E-26 115.9 3.4 59 51-109 3-61 (61)
46 2ecc_A Homeobox and leucine zi 99.8 3E-21 1E-25 119.1 4.8 62 56-118 6-67 (76)
47 3a03_A T-cell leukemia homeobo 99.8 2.8E-21 9.6E-26 113.0 4.2 54 58-111 2-55 (56)
48 1x2n_A Homeobox protein pknox1 99.8 1E-20 3.5E-25 116.2 6.1 64 50-113 4-70 (73)
49 2ecb_A Zinc fingers and homeob 99.8 2.9E-20 9.9E-25 118.2 8.2 57 59-115 17-73 (89)
50 1wi3_A DNA-binding protein SAT 99.8 7.1E-21 2.4E-25 114.0 4.5 58 50-107 4-62 (71)
51 2dmn_A Homeobox protein TGIF2L 99.8 6.2E-20 2.1E-24 115.4 7.6 66 50-115 4-72 (83)
52 1e3o_C Octamer-binding transcr 99.8 1.4E-20 4.9E-25 131.5 4.2 62 50-111 98-159 (160)
53 2da6_A Hepatocyte nuclear fact 99.8 4.5E-20 1.5E-24 119.6 5.9 68 50-117 3-91 (102)
54 2xsd_C POU domain, class 3, tr 99.8 1.3E-20 4.5E-25 132.2 3.5 65 50-114 96-160 (164)
55 1puf_B PRE-B-cell leukemia tra 99.8 4.3E-20 1.5E-24 113.4 4.8 60 54-113 2-64 (73)
56 1au7_A Protein PIT-1, GHF-1; c 99.8 2.7E-20 9.3E-25 128.4 4.4 62 50-111 84-145 (146)
57 1du6_A PBX1, homeobox protein 99.8 2E-20 6.9E-25 112.0 2.7 58 53-110 3-63 (64)
58 2dmp_A Zinc fingers and homeob 99.8 2E-19 7E-24 114.4 7.4 56 59-114 19-74 (89)
59 3nau_A Zinc fingers and homeob 99.8 5.7E-20 2E-24 110.0 4.2 52 61-112 12-63 (66)
60 2cqx_A LAG1 longevity assuranc 99.8 1.6E-20 5.5E-25 115.1 1.7 59 54-112 9-68 (72)
61 2l9r_A Homeobox protein NKX-3. 99.8 5.1E-20 1.7E-24 111.9 3.8 56 58-113 9-64 (69)
62 1b72_B Protein (PBX1); homeodo 99.8 7.2E-20 2.5E-24 115.9 4.6 60 54-113 2-64 (87)
63 1k61_A Mating-type protein alp 99.8 9.3E-20 3.2E-24 107.8 4.4 55 57-111 2-59 (60)
64 3d1n_I POU domain, class 6, tr 99.8 1E-19 3.5E-24 126.0 5.2 61 50-110 90-150 (151)
65 1lfb_A Liver transcription fac 99.8 4.5E-20 1.5E-24 119.5 2.6 65 49-113 5-90 (99)
66 1mnm_C Protein (MAT alpha-2 tr 99.8 1.6E-19 5.6E-24 114.3 4.6 59 51-109 25-86 (87)
67 1le8_B Mating-type protein alp 99.8 2.1E-19 7.3E-24 112.9 4.4 59 54-112 3-64 (83)
68 1x2m_A LAG1 longevity assuranc 99.8 8.1E-20 2.8E-24 109.2 1.9 49 63-111 10-59 (64)
69 2e19_A Transcription factor 8; 99.8 1.5E-19 5.2E-24 108.4 2.9 53 58-110 8-60 (64)
70 3l1p_A POU domain, class 5, tr 99.8 2E-19 7E-24 125.1 3.5 61 51-111 94-154 (155)
71 2d5v_A Hepatocyte nuclear fact 99.7 6.3E-19 2.2E-23 123.5 3.3 64 50-113 94-157 (164)
72 3k2a_A Homeobox protein MEIS2; 99.7 2.8E-17 9.5E-22 99.3 3.5 55 59-113 4-61 (67)
73 1ic8_A Hepatocyte nuclear fact 99.7 1.8E-17 6.2E-22 118.9 1.5 61 49-109 111-192 (194)
74 2da7_A Zinc finger homeobox pr 99.6 3E-16 1E-20 94.4 3.5 47 62-108 14-60 (71)
75 2h8r_A Hepatocyte nuclear fact 99.6 4.9E-16 1.7E-20 112.9 3.5 61 48-108 137-218 (221)
76 2lk2_A Homeobox protein TGIF1; 99.5 2E-14 7E-19 90.8 4.3 55 58-112 10-67 (89)
77 1mh3_A Maltose binding-A1 home 99.5 6.9E-15 2.3E-19 114.4 2.4 56 54-109 366-421 (421)
78 2nzz_A Penetratin conjugated G 99.0 1.9E-11 6.5E-16 64.8 0.1 20 95-114 1-20 (37)
79 2ys9_A Homeobox and leucine zi 95.8 0.0037 1.3E-07 37.2 1.7 39 65-103 18-56 (70)
80 3hug_A RNA polymerase sigma fa 78.1 1.4 4.9E-05 26.5 2.4 51 59-114 37-87 (92)
81 2glo_A Brinker CG9653-PA; prot 76.9 1.6 5.5E-05 24.1 2.2 46 57-103 3-48 (59)
82 2elh_A CG11849-PA, LD40883P; s 73.9 3.4 0.00012 24.6 3.3 45 54-103 17-61 (87)
83 1hlv_A CENP-B, major centromer 69.6 5 0.00017 25.4 3.6 48 56-106 4-51 (131)
84 2o8x_A Probable RNA polymerase 66.2 3.2 0.00011 23.0 1.9 49 59-112 15-63 (70)
85 1tc3_C Protein (TC3 transposas 59.2 6.2 0.00021 19.7 2.1 39 59-102 5-43 (51)
86 2rgt_A Fusion of LIM/homeobox 57.1 0.09 3.1E-06 35.9 -7.1 30 51-80 134-163 (169)
87 3mzy_A RNA polymerase sigma-H 56.5 6.5 0.00022 25.1 2.3 49 59-113 109-157 (164)
88 2kvr_A Ubiquitin carboxyl-term 55.8 5.4 0.00019 26.1 1.7 23 83-105 72-94 (130)
89 1s7o_A Hypothetical UPF0122 pr 54.9 9.2 0.00032 24.1 2.7 48 59-111 22-69 (113)
90 8tfv_A Protein (thanatin); bac 52.1 2.3 7.9E-05 18.5 -0.4 15 93-107 2-16 (21)
91 1ku3_A Sigma factor SIGA; heli 49.9 9 0.00031 21.6 1.9 50 59-109 10-59 (73)
92 1jko_C HIN recombinase, DNA-in 49.8 5.8 0.0002 20.2 1.0 41 60-105 6-46 (52)
93 1p4w_A RCSB; solution structur 49.8 8.6 0.0003 23.6 1.9 45 57-107 32-76 (99)
94 2p7v_B Sigma-70, RNA polymeras 48.1 7.8 0.00027 21.6 1.4 51 59-110 5-55 (68)
95 3i5g_B Myosin regulatory light 47.6 53 0.0018 21.0 5.7 40 56-95 6-50 (153)
96 1xsv_A Hypothetical UPF0122 pr 47.5 12 0.0004 23.5 2.3 48 59-111 25-72 (113)
97 1iuf_A Centromere ABP1 protein 47.4 17 0.0006 23.6 3.2 48 54-104 6-60 (144)
98 2lfw_A PHYR sigma-like domain; 46.3 8.2 0.00028 25.2 1.5 50 59-113 93-142 (157)
99 1tty_A Sigma-A, RNA polymerase 45.5 10 0.00035 22.3 1.7 51 59-110 18-68 (87)
100 1rp3_A RNA polymerase sigma fa 45.3 13 0.00043 25.4 2.4 50 59-113 187-236 (239)
101 2qko_A Possible transcriptiona 44.8 8.6 0.0003 25.7 1.4 38 67-105 36-73 (215)
102 2jn6_A Protein CGL2762, transp 42.7 21 0.00072 21.2 2.9 42 57-102 3-45 (97)
103 1or7_A Sigma-24, RNA polymeras 41.9 15 0.00051 24.3 2.3 48 60-112 141-188 (194)
104 3c57_A Two component transcrip 41.5 13 0.00044 22.3 1.7 46 58-109 26-71 (95)
105 3plu_A Ubiquitin-like modifier 38.1 17 0.00058 22.4 1.9 27 82-108 47-73 (93)
106 2rn7_A IS629 ORFA; helix, all 37.0 36 0.0012 20.5 3.4 45 58-102 5-52 (108)
107 1je8_A Nitrate/nitrite respons 35.1 19 0.00064 20.9 1.7 45 57-107 19-63 (82)
108 2lv7_A Calcium-binding protein 32.5 60 0.002 19.4 3.8 45 57-101 27-78 (100)
109 2rnj_A Response regulator prot 31.3 22 0.00075 20.9 1.6 44 58-107 28-71 (91)
110 2x48_A CAG38821; archeal virus 31.3 22 0.00075 18.5 1.4 39 59-102 13-53 (55)
111 2jtd_A Myomesin-1, skelemin; i 31.3 0.17 5.7E-06 33.6 -8.5 44 59-103 18-61 (142)
112 1fse_A GERE; helix-turn-helix 30.5 30 0.001 19.0 2.0 44 58-107 10-53 (74)
113 1x3u_A Transcriptional regulat 30.0 23 0.00079 19.9 1.5 43 60-108 17-59 (79)
114 3ulq_B Transcriptional regulat 29.8 32 0.0011 20.4 2.1 44 56-105 26-69 (90)
115 3fiw_A Putative TETR-family tr 28.5 20 0.00068 24.4 1.1 48 57-105 22-70 (211)
116 1u78_A TC3 transposase, transp 27.3 39 0.0013 20.9 2.4 41 58-103 5-45 (141)
117 3fmy_A HTH-type transcriptiona 26.9 43 0.0015 18.6 2.3 41 58-105 9-49 (73)
118 1w8x_P Protein P16, protein S, 26.7 9.9 0.00034 23.3 -0.6 11 97-107 19-29 (117)
119 2xi8_A Putative transcription 24.5 15 0.0005 19.6 -0.2 23 83-105 17-39 (66)
120 2hxo_A Putative TETR-family tr 24.2 57 0.002 22.5 2.9 49 56-105 12-61 (237)
121 3kyd_D Small ubiquitin-related 24.2 63 0.0022 20.5 2.9 25 83-107 67-91 (115)
122 3bd1_A CRO protein; transcript 23.5 17 0.00058 20.6 0.0 23 83-105 14-36 (79)
123 2k27_A Paired box protein PAX- 23.4 55 0.0019 21.1 2.6 41 58-103 24-64 (159)
124 2r1j_L Repressor protein C2; p 23.2 16 0.00055 19.5 -0.1 23 83-105 21-43 (68)
125 3o9x_A Uncharacterized HTH-typ 23.1 50 0.0017 20.6 2.3 23 83-105 87-109 (133)
126 1pdn_C Protein (PRD paired); p 23.1 53 0.0018 19.7 2.4 40 59-103 17-56 (128)
127 2hxi_A Putative transcriptiona 23.0 28 0.00095 24.3 1.1 49 56-105 25-74 (241)
128 1wm3_A Ubiquitin-like protein 22.9 66 0.0023 18.0 2.6 25 83-107 28-52 (72)
129 2jpc_A SSRB; DNA binding prote 22.8 19 0.00066 19.1 0.2 25 83-107 16-40 (61)
130 2jpf_A Hypothetical protein; a 22.7 13 0.00045 23.0 -0.6 10 95-104 52-61 (127)
131 2q1z_A RPOE, ECF SIGE; ECF sig 22.6 9.6 0.00033 25.1 -1.4 26 85-110 156-181 (184)
132 2lhi_A Calmodulin, serine/thre 22.3 54 0.0018 21.5 2.4 39 57-95 2-45 (176)
133 2q0o_A Probable transcriptiona 22.1 56 0.0019 22.6 2.5 44 58-107 174-217 (236)
134 2pmy_A RAS and EF-hand domain- 22.1 34 0.0012 19.7 1.2 45 57-101 18-67 (91)
135 1zug_A Phage 434 CRO protein; 21.7 18 0.0006 19.6 -0.2 23 83-105 19-41 (71)
136 3bs3_A Putative DNA-binding pr 21.6 19 0.00064 19.9 -0.1 23 83-105 26-48 (76)
137 1l0o_C Sigma factor; bergerat 21.2 20 0.00069 24.3 0.0 42 60-106 199-240 (243)
138 2ylm_A Ubiquitin carboxyl-term 21.1 36 0.0012 27.3 1.4 23 83-105 52-74 (530)
139 3n3k_B Ubiquitin; hydrolase, p 20.6 52 0.0018 18.5 1.8 26 82-107 29-54 (85)
140 3a4r_A Nfatc2-interacting prot 20.0 81 0.0028 18.1 2.6 24 84-107 36-59 (79)
No 1
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.89 E-value=8.5e-24 Score=133.27 Aligned_cols=67 Identities=21% Similarity=0.162 Sum_probs=61.6
Q ss_pred CccCCCCCCCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhhhhc
Q psy5909 48 VDKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQDIEF 114 (130)
Q Consensus 48 ~~~~~~rr~Rt~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~~~~ 114 (130)
....+.++.||.|+..|+.+|+..|..++||+..++..||..|||++.+|+|||||||+|+|+..+.
T Consensus 17 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~k~ 83 (84)
T 2kt0_A 17 KVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQKN 83 (84)
T ss_dssp CCCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhc
Confidence 3455678899999999999999999999999999999999999999999999999999999887653
No 2
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=1.4e-23 Score=131.18 Aligned_cols=65 Identities=32% Similarity=0.329 Sum_probs=60.5
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhhhh
Q psy5909 49 DKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQDIE 113 (130)
Q Consensus 49 ~~~~~rr~Rt~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~~~ 113 (130)
...+.++.|+.||..|+.+|+..|..++||+..++..||..|+|++.+|+|||||||+|+++...
T Consensus 13 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~~ 77 (80)
T 2dmt_A 13 KAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSGP 77 (80)
T ss_dssp CCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcccC
Confidence 35567889999999999999999999999999999999999999999999999999999988654
No 3
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.88 E-value=4.5e-23 Score=128.89 Aligned_cols=67 Identities=43% Similarity=0.534 Sum_probs=61.5
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhhhhccC
Q psy5909 50 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQDIEFNI 116 (130)
Q Consensus 50 ~~~~rr~Rt~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~~~~~~ 116 (130)
..+.++.|+.||..|+..|+..|..++||+..++..||..++|++.+|+|||||||+|+|+......
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~~~ 70 (80)
T 2dms_A 4 GSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQQ 70 (80)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHccC
Confidence 3567889999999999999999999999999999999999999999999999999999988765433
No 4
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.88 E-value=3.3e-23 Score=126.47 Aligned_cols=64 Identities=19% Similarity=0.213 Sum_probs=59.6
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhhhh
Q psy5909 50 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQDIE 113 (130)
Q Consensus 50 ~~~~rr~Rt~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~~~ 113 (130)
..+.++.|+.||..|+.+|+..|..++||+..++..||..+||++.+|+|||||||+|+++...
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (70)
T 2cra_A 4 GSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSGP 67 (70)
T ss_dssp SCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSCT
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccCC
Confidence 4456888999999999999999999999999999999999999999999999999999987653
No 5
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.88 E-value=3.9e-23 Score=129.01 Aligned_cols=65 Identities=23% Similarity=0.147 Sum_probs=60.2
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhhhh
Q psy5909 49 DKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQDIE 113 (130)
Q Consensus 49 ~~~~~rr~Rt~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~~~ 113 (130)
...+.++.|+.||..|+..|+..|..++||+..++.+||..|||++.+|+|||||||+|+|+...
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 77 (80)
T 2da3_A 13 EPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSGP 77 (80)
T ss_dssp CCCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhcc
Confidence 34567889999999999999999999999999999999999999999999999999999987543
No 6
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=1.3e-22 Score=126.73 Aligned_cols=66 Identities=23% Similarity=0.198 Sum_probs=60.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhhhhccC
Q psy5909 51 KKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQDIEFNI 116 (130)
Q Consensus 51 ~~~rr~Rt~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~~~~~~ 116 (130)
.+.++.|+.||..|+..|+..|..++||+..++..||..+||++.+|+|||||||+|+++......
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~~ 70 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQE 70 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHHHh
Confidence 456889999999999999999999999999999999999999999999999999999988765433
No 7
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=6.9e-23 Score=124.99 Aligned_cols=63 Identities=38% Similarity=0.419 Sum_probs=59.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhhhh
Q psy5909 51 KKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQDIE 113 (130)
Q Consensus 51 ~~~rr~Rt~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~~~ 113 (130)
...++.|+.||..|+..|+..|..++||+..++..||..+||++.+|+|||||||+|+++...
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTST
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccCC
Confidence 456788999999999999999999999999999999999999999999999999999988654
No 8
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.88 E-value=1.2e-22 Score=126.19 Aligned_cols=67 Identities=27% Similarity=0.226 Sum_probs=61.7
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhhhhccC
Q psy5909 50 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQDIEFNI 116 (130)
Q Consensus 50 ~~~~rr~Rt~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~~~~~~ 116 (130)
..+.++.|+.||..|+..|+..|..++||+...+..||..+||++.+|+|||||||+|+++......
T Consensus 6 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~~ 72 (77)
T 1nk2_P 6 PNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEKG 72 (77)
T ss_dssp SCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhcccc
Confidence 4556888999999999999999999999999999999999999999999999999999988776544
No 9
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.87 E-value=5.8e-23 Score=125.28 Aligned_cols=64 Identities=27% Similarity=0.267 Sum_probs=59.8
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhhhh
Q psy5909 50 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQDIE 113 (130)
Q Consensus 50 ~~~~rr~Rt~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~~~ 113 (130)
..+.++.|+.||..|+..|+..|..++||+..++..||..+||++.+|+|||||||+|+++...
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da2_A 4 GSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGP 67 (70)
T ss_dssp SCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhccc
Confidence 4467889999999999999999999999999999999999999999999999999999988654
No 10
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.87 E-value=6.4e-23 Score=128.29 Aligned_cols=61 Identities=15% Similarity=0.070 Sum_probs=57.3
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHh----hCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhh
Q psy5909 50 KKKHRRNRTTFTTYQLHELERAFEK----SHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQ 110 (130)
Q Consensus 50 ~~~~rr~Rt~~t~~q~~~L~~~F~~----~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~ 110 (130)
..+.+|.||.||..|+..|+..|.. ++||+..++++||..|+|++.+|+|||||||+|+++
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 3467889999999999999999999 999999999999999999999999999999999764
No 11
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.87 E-value=1.7e-22 Score=125.48 Aligned_cols=67 Identities=24% Similarity=0.144 Sum_probs=61.6
Q ss_pred CccCCCCCCCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhhhhc
Q psy5909 48 VDKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQDIEF 114 (130)
Q Consensus 48 ~~~~~~rr~Rt~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~~~~ 114 (130)
...++.++.|+.||..|+.+|+..|..++||+..++..||..+||++.+|+|||||||+|+++..+.
T Consensus 8 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k~ 74 (77)
T 1puf_A 8 LHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp CCCCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhhh
Confidence 3445678899999999999999999999999999999999999999999999999999999887653
No 12
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.87 E-value=6.5e-23 Score=128.22 Aligned_cols=60 Identities=17% Similarity=0.099 Sum_probs=56.2
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHh-----hCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhh
Q psy5909 50 KKKHRRNRTTFTTYQLHELERAFEK-----SHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQ 110 (130)
Q Consensus 50 ~~~~rr~Rt~~t~~q~~~L~~~F~~-----~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~ 110 (130)
..+++|.||.||..|+..|+ .|.. ++||+..++++||..|+|++.+|+|||||||+|+++
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 14 GGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 45678899999999999999 8999 999999999999999999999999999999999864
No 13
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.87 E-value=1.1e-22 Score=127.16 Aligned_cols=65 Identities=40% Similarity=0.626 Sum_probs=60.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhhhhcc
Q psy5909 51 KKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQDIEFN 115 (130)
Q Consensus 51 ~~~rr~Rt~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~~~~~ 115 (130)
...++.|+.||..|+.+|+..|..++||+..++..||..|+|++.+|+|||||||+|+++..+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 69 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLR 69 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhh
Confidence 45688999999999999999999999999999999999999999999999999999998876543
No 14
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.87 E-value=6.1e-23 Score=125.19 Aligned_cols=64 Identities=25% Similarity=0.178 Sum_probs=59.8
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhhhh
Q psy5909 50 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQDIE 113 (130)
Q Consensus 50 ~~~~rr~Rt~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~~~ 113 (130)
..+.++.|+.||..|+..|+..|..++||+..++..||..+||++.+|+|||||||+|+++..+
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da1_A 4 GSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGP 67 (70)
T ss_dssp SCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhcc
Confidence 3456889999999999999999999999999999999999999999999999999999988654
No 15
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.87 E-value=1.7e-22 Score=123.21 Aligned_cols=63 Identities=22% Similarity=0.181 Sum_probs=58.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhhhh
Q psy5909 51 KKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQDIE 113 (130)
Q Consensus 51 ~~~rr~Rt~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~~~ 113 (130)
...++.|+.||..|+.+|+..|..++||+..++..||..+||++.+|+|||||||+|+++...
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGP 67 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCCC
Confidence 345778999999999999999999999999999999999999999999999999999988654
No 16
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=7.2e-23 Score=124.93 Aligned_cols=64 Identities=27% Similarity=0.330 Sum_probs=59.3
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhhhh
Q psy5909 50 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQDIE 113 (130)
Q Consensus 50 ~~~~rr~Rt~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~~~ 113 (130)
..+.++.|+.||..|+.+|+..|..++||+..++..||..+||++.+|+|||||||+|+++...
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2djn_A 4 GSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSGP 67 (70)
T ss_dssp CCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccCC
Confidence 3456888999999999999999999999999999999999999999999999999999987543
No 17
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.86 E-value=1.8e-22 Score=120.74 Aligned_cols=60 Identities=30% Similarity=0.289 Sum_probs=55.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhh
Q psy5909 52 KHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQD 111 (130)
Q Consensus 52 ~~rr~Rt~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~ 111 (130)
..++.|+.||..|+..|+..|..++||+...+..||..+||++.+|+|||||||+|+++.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 357889999999999999999999999999999999999999999999999999999875
No 18
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.86 E-value=1.9e-22 Score=122.43 Aligned_cols=64 Identities=25% Similarity=0.241 Sum_probs=59.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhhhhccC
Q psy5909 53 HRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQDIEFNI 116 (130)
Q Consensus 53 ~rr~Rt~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~~~~~~ 116 (130)
+++.|+.||..|+..|+..|..++||+...+..||..+||++.+|+|||||||+|+++..+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~~~~ 65 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENKTKG 65 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhccccC
Confidence 4678999999999999999999999999999999999999999999999999999988765443
No 19
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.86 E-value=1.4e-22 Score=120.82 Aligned_cols=60 Identities=23% Similarity=0.199 Sum_probs=52.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhh
Q psy5909 52 KHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQD 111 (130)
Q Consensus 52 ~~rr~Rt~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~ 111 (130)
+.++.|+.||..|+..|+..|..++||+...+..||..+||++.+|+|||||||+|+++.
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 457889999999999999999999999999999999999999999999999999999874
No 20
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.86 E-value=2.1e-22 Score=119.71 Aligned_cols=58 Identities=24% Similarity=0.333 Sum_probs=53.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhh
Q psy5909 53 HRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQ 110 (130)
Q Consensus 53 ~rr~Rt~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~ 110 (130)
.++.|+.||..|+..|+..|..++||+..++..||..+||++.+|+|||||||+|+++
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 4788999999999999999999999999999999999999999999999999999876
No 21
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.86 E-value=5.8e-22 Score=127.18 Aligned_cols=67 Identities=24% Similarity=0.277 Sum_probs=61.5
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhhhhcc
Q psy5909 49 DKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQDIEFN 115 (130)
Q Consensus 49 ~~~~~rr~Rt~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~~~~~ 115 (130)
...+.++.||.||..|+..|+..|..++||+...+..||..+||++.+|+|||||||+|+++.....
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~ 79 (93)
T 3a01_A 13 TPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEE 79 (93)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHH
Confidence 3456788899999999999999999999999999999999999999999999999999998876543
No 22
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.86 E-value=3.4e-22 Score=125.14 Aligned_cols=65 Identities=48% Similarity=0.659 Sum_probs=59.0
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhhhh
Q psy5909 49 DKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQDIE 113 (130)
Q Consensus 49 ~~~~~rr~Rt~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~~~ 113 (130)
..++.++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|+|||||||+|+++...
T Consensus 14 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 14 LKRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp ---CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 35567889999999999999999999999999999999999999999999999999999988653
No 23
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=2.1e-22 Score=125.88 Aligned_cols=63 Identities=14% Similarity=-0.020 Sum_probs=58.9
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhhh
Q psy5909 50 KKKHRRNRTTFTTYQLHELERAFEKS----HYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQDI 112 (130)
Q Consensus 50 ~~~~rr~Rt~~t~~q~~~L~~~F~~~----~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~~ 112 (130)
.++.++.||.||..|+.+|+..|..+ +||+..++.+||..+||++.+|+|||||||+|+++..
T Consensus 5 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 5 SSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 45678899999999999999999999 9999999999999999999999999999999998743
No 24
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.86 E-value=5.2e-22 Score=122.40 Aligned_cols=65 Identities=54% Similarity=0.760 Sum_probs=60.4
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhhhhc
Q psy5909 50 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQDIEF 114 (130)
Q Consensus 50 ~~~~rr~Rt~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~~~~ 114 (130)
.+++++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|+|||||||+|+++..+.
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r~ 70 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERF 70 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHhh
Confidence 45668889999999999999999999999999999999999999999999999999999886554
No 25
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.86 E-value=5.1e-22 Score=122.12 Aligned_cols=64 Identities=25% Similarity=0.280 Sum_probs=59.4
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhhhh
Q psy5909 50 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQDIE 113 (130)
Q Consensus 50 ~~~~rr~Rt~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~~~ 113 (130)
..+.++.|+.||..|+..|+..|..++||+..++..||..+||++.+|+|||||||+|+++...
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 67 (73)
T 2l7z_A 4 MLEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVIN 67 (73)
T ss_dssp SSCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhc
Confidence 3456888999999999999999999999999999999999999999999999999999987643
No 26
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.85 E-value=4.5e-22 Score=117.09 Aligned_cols=57 Identities=32% Similarity=0.394 Sum_probs=55.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhh
Q psy5909 54 RRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQ 110 (130)
Q Consensus 54 rr~Rt~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~ 110 (130)
++.|+.||..|+..|+..|..++||+..++..||..+||++.+|+|||||||+|+++
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 478999999999999999999999999999999999999999999999999999976
No 27
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.85 E-value=5.7e-22 Score=120.30 Aligned_cols=62 Identities=27% Similarity=0.262 Sum_probs=58.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhhhhc
Q psy5909 53 HRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQDIEF 114 (130)
Q Consensus 53 ~rr~Rt~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~~~~ 114 (130)
.++.|+.||..|+..|+..|..++||+...+..||..+||++.+|+|||||||+|+++....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~ 63 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQ 63 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhcc
Confidence 47889999999999999999999999999999999999999999999999999999887654
No 28
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.85 E-value=8.5e-22 Score=119.53 Aligned_cols=63 Identities=25% Similarity=0.270 Sum_probs=59.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhhhhcc
Q psy5909 53 HRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQDIEFN 115 (130)
Q Consensus 53 ~rr~Rt~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~~~~~ 115 (130)
+++.|+.||..|+..|+..|..++||+...+..||..+||++.+|+|||||||+|+++..+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 64 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDK 64 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhhHh
Confidence 467899999999999999999999999999999999999999999999999999998876543
No 29
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.85 E-value=4.4e-22 Score=128.41 Aligned_cols=62 Identities=19% Similarity=0.111 Sum_probs=55.3
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhh
Q psy5909 50 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQD 111 (130)
Q Consensus 50 ~~~~rr~Rt~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~ 111 (130)
....++.|+.||..|+.+|+..|..++||+..++.+||..+||++.+|+|||||||+|+|+.
T Consensus 22 ~~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~ 83 (96)
T 3nar_A 22 KSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNG 83 (96)
T ss_dssp -----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhh
Confidence 34456789999999999999999999999999999999999999999999999999999875
No 30
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.85 E-value=6.8e-22 Score=123.85 Aligned_cols=63 Identities=30% Similarity=0.362 Sum_probs=54.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhhhh
Q psy5909 51 KKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQDIE 113 (130)
Q Consensus 51 ~~~rr~Rt~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~~~ 113 (130)
...++.|+.||..|+..|+..|..++||+...+..||..+||++.+|+|||||||+|+|+..+
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 80 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEIQ 80 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC-
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhcc
Confidence 356788999999999999999999999999999999999999999999999999999988643
No 31
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.85 E-value=6e-22 Score=117.36 Aligned_cols=58 Identities=36% Similarity=0.402 Sum_probs=55.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhh
Q psy5909 54 RRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQD 111 (130)
Q Consensus 54 rr~Rt~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~ 111 (130)
++.|+.||..|+..|+..|..++||+..++..||..+||++.+|+|||||||+|+++.
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 5789999999999999999999999999999999999999999999999999999874
No 32
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.84 E-value=5.5e-22 Score=126.05 Aligned_cols=63 Identities=25% Similarity=0.282 Sum_probs=55.2
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhhh
Q psy5909 50 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQDI 112 (130)
Q Consensus 50 ~~~~rr~Rt~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~~ 112 (130)
....++.|+.||..|+.+|+..|..++||+..++..||..+||++.+|+|||||||+|+|+..
T Consensus 25 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 25 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 345678899999999999999999999999999999999999999999999999999998754
No 33
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.84 E-value=2.8e-22 Score=121.68 Aligned_cols=63 Identities=40% Similarity=0.539 Sum_probs=59.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhhhhc
Q psy5909 52 KHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQDIEF 114 (130)
Q Consensus 52 ~~rr~Rt~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~~~~ 114 (130)
+.++.|+.||..|+..|+..|..++||+..++..||..+||++.+|+|||||||+|+++..+.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~~ 64 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREEF 64 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhhc
Confidence 467889999999999999999999999999999999999999999999999999999886653
No 34
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1e-21 Score=121.65 Aligned_cols=63 Identities=14% Similarity=-0.001 Sum_probs=57.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhhhhccC
Q psy5909 54 RRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQDIEFNI 116 (130)
Q Consensus 54 rr~Rt~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~~~~~~ 116 (130)
...|+.||..|+.+|+..|..++||+..++..||..+||++.+|+|||||||+|+|+......
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~~~~ 71 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKGSRS 71 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCSSSC
T ss_pred CCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhcccCC
Confidence 445899999999999999999999999999999999999999999999999999988665433
No 35
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.84 E-value=2.8e-21 Score=124.38 Aligned_cols=65 Identities=23% Similarity=0.234 Sum_probs=61.3
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhC---------------CCCCccceechhhhhHHhhhhhc
Q psy5909 50 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVN---------------LPEVRVQAVGMLYYSVELQDIEF 114 (130)
Q Consensus 50 ~~~~rr~Rt~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~---------------l~~~~VqvWFqNrR~k~~~~~~~ 114 (130)
..+.++.|+.|+..|+.+|+..|..++||+..+++.||..|+ |++.+|+|||||||+|+++..+.
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~~ 83 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANI 83 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhhc
Confidence 456788999999999999999999999999999999999999 99999999999999999887765
No 36
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.84 E-value=8.7e-22 Score=118.78 Aligned_cols=60 Identities=22% Similarity=0.235 Sum_probs=56.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhh
Q psy5909 52 KHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQD 111 (130)
Q Consensus 52 ~~rr~Rt~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~ 111 (130)
+.++.|+.||..|+..|+..|..++||+..++..||..+||++.+|+|||||||+|+++.
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 61 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKR 61 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHH
Confidence 357889999999999999999999999999999999999999999999999999998764
No 37
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=3e-21 Score=119.26 Aligned_cols=59 Identities=12% Similarity=0.032 Sum_probs=55.1
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhhhh
Q psy5909 55 RNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQDIE 113 (130)
Q Consensus 55 r~Rt~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~~~ 113 (130)
+.|+.||..|+..|+..|..++||+..++..||..+||++.+|+|||||||+|+++..+
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEET 67 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSC
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhh
Confidence 45677999999999999999999999999999999999999999999999999988654
No 38
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.84 E-value=2.5e-21 Score=119.15 Aligned_cols=64 Identities=16% Similarity=0.008 Sum_probs=59.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhhhhccC
Q psy5909 53 HRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQDIEFNI 116 (130)
Q Consensus 53 ~rr~Rt~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~~~~~~ 116 (130)
.++.|+.||..|+.+|+..|..++||+..++.+||..+||++.+|+|||||||+|+++.....+
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~~ 69 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSNQC 69 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTCSCC
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCcCCC
Confidence 4678999999999999999999999999999999999999999999999999999988765444
No 39
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.84 E-value=1.1e-21 Score=126.82 Aligned_cols=64 Identities=28% Similarity=0.216 Sum_probs=56.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhhhhc
Q psy5909 51 KKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQDIEF 114 (130)
Q Consensus 51 ~~~rr~Rt~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~~~~ 114 (130)
...++.|+.||..|+..|+..|..++||+...+..||..|||++.+|+|||||||+|+|+..+.
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 95 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRERE 95 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhcc
Confidence 4567889999999999999999999999999999999999999999999999999999887654
No 40
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.84 E-value=1.3e-21 Score=114.91 Aligned_cols=57 Identities=26% Similarity=0.306 Sum_probs=54.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHh
Q psy5909 53 HRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVEL 109 (130)
Q Consensus 53 ~rr~Rt~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~ 109 (130)
+++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|+|||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 467899999999999999999999999999999999999999999999999999874
No 41
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.84 E-value=3.9e-21 Score=118.10 Aligned_cols=61 Identities=20% Similarity=0.069 Sum_probs=57.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHh-hCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhhhhc
Q psy5909 54 RRNRTTFTTYQLHELERAFEK-SHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQDIEF 114 (130)
Q Consensus 54 rr~Rt~~t~~q~~~L~~~F~~-~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~~~~ 114 (130)
.+.|+.||..|+.+|+..|.. ++||+...+..||..+||++.+|+|||||||+|+++....
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~~~ 64 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGL 64 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhccC
Confidence 467899999999999999995 9999999999999999999999999999999999887653
No 42
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.83 E-value=3.6e-21 Score=117.93 Aligned_cols=61 Identities=21% Similarity=0.116 Sum_probs=56.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHh-hCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhhhhc
Q psy5909 54 RRNRTTFTTYQLHELERAFEK-SHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQDIEF 114 (130)
Q Consensus 54 rr~Rt~~t~~q~~~L~~~F~~-~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~~~~ 114 (130)
.+.|+.||..|+..|+..|.. ++||+...+..||..+||++.+|+|||||||+|+++....
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~~~ 63 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGL 63 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhccC
Confidence 457899999999999999996 9999999999999999999999999999999999887643
No 43
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.83 E-value=1.5e-21 Score=115.66 Aligned_cols=58 Identities=45% Similarity=0.670 Sum_probs=50.5
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhhhh
Q psy5909 56 NRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQDIE 113 (130)
Q Consensus 56 ~Rt~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~~~ 113 (130)
.|+.||..|+..|+..|..++||+...+..||..+||++.+|+|||||||+|+++..+
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~k 59 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 59 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC----
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhcc
Confidence 4789999999999999999999999999999999999999999999999999987643
No 44
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.83 E-value=2.6e-21 Score=117.03 Aligned_cols=60 Identities=33% Similarity=0.339 Sum_probs=57.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhhhh
Q psy5909 54 RRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQDIE 113 (130)
Q Consensus 54 rr~Rt~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~~~ 113 (130)
++.|+.||..|+..|+..|..++||+...+..||..+||++.+|+|||||||+|+++...
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~ 61 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHR 61 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCC
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhch
Confidence 678999999999999999999999999999999999999999999999999999987654
No 45
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.83 E-value=1.5e-21 Score=115.90 Aligned_cols=59 Identities=15% Similarity=0.171 Sum_probs=48.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHh
Q psy5909 51 KKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVEL 109 (130)
Q Consensus 51 ~~~rr~Rt~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~ 109 (130)
.+.++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|+|||||||+|++
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 45678899999999999999999999999999999999999999999999999999874
No 46
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.83 E-value=3e-21 Score=119.13 Aligned_cols=62 Identities=13% Similarity=-0.017 Sum_probs=55.8
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhhhhccCCC
Q psy5909 56 NRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQDIEFNIRV 118 (130)
Q Consensus 56 ~Rt~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~~~~~~~~ 118 (130)
.|+.||..|+.+|+..|..++||+..++++||..+||++.||+|||||||+|+|+. ...++-
T Consensus 6 ~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~-~l~w~~ 67 (76)
T 2ecc_A 6 SGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHG-QLKWFR 67 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHT-CCSSTT
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHH-HHHHHH
Confidence 45679999999999999999999999999999999999999999999999999764 444444
No 47
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.83 E-value=2.8e-21 Score=113.03 Aligned_cols=54 Identities=24% Similarity=0.265 Sum_probs=50.7
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhh
Q psy5909 58 TTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQD 111 (130)
Q Consensus 58 t~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~ 111 (130)
|.||..|+..|+..|..++||+...+..||..+||++.+|+|||||||+|+|+.
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 689999999999999999999999999999999999999999999999999874
No 48
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.82 E-value=1e-20 Score=116.18 Aligned_cols=64 Identities=14% Similarity=0.108 Sum_probs=58.9
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhhhh
Q psy5909 50 KKKHRRNRTTFTTYQLHELERAFEK---SHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQDIE 113 (130)
Q Consensus 50 ~~~~rr~Rt~~t~~q~~~L~~~F~~---~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~~~ 113 (130)
..+.++.|+.|+..|+..|+..|.. ++||+..++..||..+||++.||+|||||||+|+++...
T Consensus 4 ~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 4 GSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp CSSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccc
Confidence 3456788999999999999999987 999999999999999999999999999999999988654
No 49
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.82 E-value=2.9e-20 Score=118.16 Aligned_cols=57 Identities=18% Similarity=-0.008 Sum_probs=53.3
Q ss_pred CCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhhhhcc
Q psy5909 59 TFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQDIEFN 115 (130)
Q Consensus 59 ~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~~~~~ 115 (130)
.||..|+.+|+..|..++||+...|.+||..|||++.||+|||||||+||++..+..
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~~~ 73 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEKM 73 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCSCC
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHHHh
Confidence 799999999999999999999999999999999999999999999999998755433
No 50
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.82 E-value=7.1e-21 Score=113.97 Aligned_cols=58 Identities=19% Similarity=0.181 Sum_probs=54.9
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHh-hCCCCHHHHHHHHHHhCCCCCccceechhhhhH
Q psy5909 50 KKKHRRNRTTFTTYQLHELERAFEK-SHYPDVYSREELAMKVNLPEVRVQAVGMLYYSV 107 (130)
Q Consensus 50 ~~~~rr~Rt~~t~~q~~~L~~~F~~-~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k 107 (130)
.+..+|.||.|+.+|+..|+..|+. +.||+...|+.||.++||++++|||||||+|--
T Consensus 4 ~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~ 62 (71)
T 1wi3_A 4 GSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYH 62 (71)
T ss_dssp CCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceee
Confidence 4467899999999999999999999 999999999999999999999999999999964
No 51
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.81 E-value=6.2e-20 Score=115.40 Aligned_cols=66 Identities=15% Similarity=0.145 Sum_probs=59.3
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhhhhcc
Q psy5909 50 KKKHRRNRTTFTTYQLHELERAFEK---SHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQDIEFN 115 (130)
Q Consensus 50 ~~~~rr~Rt~~t~~q~~~L~~~F~~---~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~~~~~ 115 (130)
..++++.|+.|+..|+..|+..|.. ++||+..++..||..+||+..||+|||||+|+|+++.+...
T Consensus 4 ~~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~~ 72 (83)
T 2dmn_A 4 GSSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQ 72 (83)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTCC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHHh
Confidence 3456788999999999999999988 59999999999999999999999999999999998765443
No 52
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.80 E-value=1.4e-20 Score=131.52 Aligned_cols=62 Identities=18% Similarity=0.149 Sum_probs=54.6
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhh
Q psy5909 50 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQD 111 (130)
Q Consensus 50 ~~~~rr~Rt~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~ 111 (130)
..++|+.||.|+..|+..|+..|..++||+..++..||..+||++.+|+|||||||+|+||.
T Consensus 98 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 98 LSRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 34678899999999999999999999999999999999999999999999999999999874
No 53
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=4.5e-20 Score=119.55 Aligned_cols=68 Identities=21% Similarity=0.173 Sum_probs=61.4
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHh---------------------CCCCCccceechhhhhHH
Q psy5909 50 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKV---------------------NLPEVRVQAVGMLYYSVE 108 (130)
Q Consensus 50 ~~~~rr~Rt~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l---------------------~l~~~~VqvWFqNrR~k~ 108 (130)
.++.||.|+.|+..|+.+|+..|..++||+..+|++||..| .|++.+|+|||||||+++
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 34678899999999999999999999999999999999999 799999999999999999
Q ss_pred hhhhhccCC
Q psy5909 109 LQDIEFNIR 117 (130)
Q Consensus 109 ~~~~~~~~~ 117 (130)
++..+....
T Consensus 83 kr~~~~~~~ 91 (102)
T 2da6_A 83 AFRQKLAMD 91 (102)
T ss_dssp HHHHHHHHS
T ss_pred HHhhHhhhc
Confidence 887655433
No 54
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.80 E-value=1.3e-20 Score=132.24 Aligned_cols=65 Identities=20% Similarity=0.094 Sum_probs=52.4
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhhhhc
Q psy5909 50 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQDIEF 114 (130)
Q Consensus 50 ~~~~rr~Rt~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~~~~ 114 (130)
..++++.||.|+..|+..|+..|..++||+..++..||..+||++.+|+|||||||+|+|+..+.
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~ 160 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTPA 160 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC-
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccCC
Confidence 45678899999999999999999999999999999999999999999999999999999886653
No 55
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.80 E-value=4.3e-20 Score=113.35 Aligned_cols=60 Identities=25% Similarity=0.226 Sum_probs=56.7
Q ss_pred CCCCCCCCHHHHHHHHHHH---HhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhhhh
Q psy5909 54 RRNRTTFTTYQLHELERAF---EKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQDIE 113 (130)
Q Consensus 54 rr~Rt~~t~~q~~~L~~~F---~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~~~ 113 (130)
++.|+.|+..|+..|+..| ..++||+..++..||..+||++.+|+|||||||+|+++...
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 64 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIG 64 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccc
Confidence 6789999999999999999 89999999999999999999999999999999999987654
No 56
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.80 E-value=2.7e-20 Score=128.37 Aligned_cols=62 Identities=23% Similarity=0.202 Sum_probs=55.4
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhh
Q psy5909 50 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQD 111 (130)
Q Consensus 50 ~~~~rr~Rt~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~ 111 (130)
..++++.||.||..|+..|+..|..++||+...+..||..+||++.+|+|||||||+|+||.
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 45667889999999999999999999999999999999999999999999999999999874
No 57
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.79 E-value=2e-20 Score=112.04 Aligned_cols=58 Identities=17% Similarity=0.063 Sum_probs=55.2
Q ss_pred CCCCCCCCCHHHHHHHHHHH---HhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhh
Q psy5909 53 HRRNRTTFTTYQLHELERAF---EKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQ 110 (130)
Q Consensus 53 ~rr~Rt~~t~~q~~~L~~~F---~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~ 110 (130)
.++.|+.|+..|+..|+..| ..++||+..++..||..+||++.||+|||||+|+|+++
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 46789999999999999999 89999999999999999999999999999999999865
No 58
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=2e-19 Score=114.40 Aligned_cols=56 Identities=18% Similarity=0.105 Sum_probs=52.6
Q ss_pred CCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhhhhc
Q psy5909 59 TFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQDIEF 114 (130)
Q Consensus 59 ~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~~~~ 114 (130)
.||..|+.+|+..|..++||+..++..||..+||++.+|+|||||||+|+++....
T Consensus 19 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~~ 74 (89)
T 2dmp_A 19 EKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQA 74 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCSC
T ss_pred cCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhHh
Confidence 49999999999999999999999999999999999999999999999999776543
No 59
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.79 E-value=5.7e-20 Score=109.99 Aligned_cols=52 Identities=19% Similarity=0.105 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhhh
Q psy5909 61 TTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQDI 112 (130)
Q Consensus 61 t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~~ 112 (130)
|..|+.+|+..|..++||+..++.+||..+||+..+|++||||||+|+++..
T Consensus 12 ~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 12 TKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 6899999999999999999999999999999999999999999999998754
No 60
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.79 E-value=1.6e-20 Score=115.15 Aligned_cols=59 Identities=14% Similarity=0.119 Sum_probs=53.8
Q ss_pred CCCCCCCCHHHHHHHHHHH-HhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhhh
Q psy5909 54 RRNRTTFTTYQLHELERAF-EKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQDI 112 (130)
Q Consensus 54 rr~Rt~~t~~q~~~L~~~F-~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~~ 112 (130)
.+.+..++..|+.+||..| ..++||+...+.+||..+||++++|+|||||||+|+|+..
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCC
Confidence 4456678888999999999 9999999999999999999999999999999999998643
No 61
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.79 E-value=5.1e-20 Score=111.93 Aligned_cols=56 Identities=23% Similarity=0.208 Sum_probs=52.7
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhhhh
Q psy5909 58 TTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQDIE 113 (130)
Q Consensus 58 t~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~~~ 113 (130)
..+|..|+..|+..|..++||+...|.+||..+||++++|+|||||||+|+|+...
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~ 64 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL 64 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSS
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhh
Confidence 46899999999999999999999999999999999999999999999999987654
No 62
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.79 E-value=7.2e-20 Score=115.86 Aligned_cols=60 Identities=25% Similarity=0.226 Sum_probs=56.2
Q ss_pred CCCCCCCCHHHHHHHHHHH---HhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhhhh
Q psy5909 54 RRNRTTFTTYQLHELERAF---EKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQDIE 113 (130)
Q Consensus 54 rr~Rt~~t~~q~~~L~~~F---~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~~~ 113 (130)
|+.|+.|+..|+.+|+..| ..++||+..++..||..+||++.+|+|||||||+|+++...
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~ 64 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIG 64 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccc
Confidence 6789999999999999999 89999999999999999999999999999999999988654
No 63
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.78 E-value=9.3e-20 Score=107.81 Aligned_cols=55 Identities=22% Similarity=0.181 Sum_probs=52.8
Q ss_pred CCCCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhh
Q psy5909 57 RTTFTTYQLHELERAFEK---SHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQD 111 (130)
Q Consensus 57 Rt~~t~~q~~~L~~~F~~---~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~ 111 (130)
|+.|+..|+..|+..|.. ++||+..++..||..+||++.+|+|||||||+|+|+.
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred cCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 688999999999999999 9999999999999999999999999999999999763
No 64
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.78 E-value=1e-19 Score=126.04 Aligned_cols=61 Identities=25% Similarity=0.230 Sum_probs=57.7
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhh
Q psy5909 50 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQ 110 (130)
Q Consensus 50 ~~~~rr~Rt~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~ 110 (130)
..++++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|+|||||||+|+||
T Consensus 90 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 90 PSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 3467789999999999999999999999999999999999999999999999999999875
No 65
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.78 E-value=4.5e-20 Score=119.53 Aligned_cols=65 Identities=28% Similarity=0.241 Sum_probs=53.3
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH------------------hC---CCCCccceechhhhhH
Q psy5909 49 DKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMK------------------VN---LPEVRVQAVGMLYYSV 107 (130)
Q Consensus 49 ~~~~~rr~Rt~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~------------------l~---l~~~~VqvWFqNrR~k 107 (130)
..++.|+.|+.|+..|+..|+..|..++||+...|++||.. || |++.+|+|||||||++
T Consensus 5 ~~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k 84 (99)
T 1lfb_A 5 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 84 (99)
T ss_dssp --------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHH
Confidence 34567889999999999999999999999999999999999 88 9999999999999998
Q ss_pred Hhhhhh
Q psy5909 108 ELQDIE 113 (130)
Q Consensus 108 ~~~~~~ 113 (130)
+++..+
T Consensus 85 ~k~k~~ 90 (99)
T 1lfb_A 85 EAFRHK 90 (99)
T ss_dssp TSCCC-
T ss_pred HHHhch
Confidence 866443
No 66
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.77 E-value=1.6e-19 Score=114.33 Aligned_cols=59 Identities=20% Similarity=0.182 Sum_probs=55.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHhCCCCCccceechhhhhHHh
Q psy5909 51 KKHRRNRTTFTTYQLHELERAFEK---SHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVEL 109 (130)
Q Consensus 51 ~~~rr~Rt~~t~~q~~~L~~~F~~---~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~ 109 (130)
.++++.|+.|+..|+..|+..|.. ++||+..++..||..+||++.+|+|||||||+|+|
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 445667999999999999999999 99999999999999999999999999999999986
No 67
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.77 E-value=2.1e-19 Score=112.89 Aligned_cols=59 Identities=20% Similarity=0.174 Sum_probs=53.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhhh
Q psy5909 54 RRNRTTFTTYQLHELERAFEK---SHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQDI 112 (130)
Q Consensus 54 rr~Rt~~t~~q~~~L~~~F~~---~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~~ 112 (130)
++.|+.|+..|+..|+..|.. ++||+..++..||..+||++.||+|||||||+|+++..
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~ 64 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTIT 64 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccc
Confidence 345677999999999999999 99999999999999999999999999999999997753
No 68
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.77 E-value=8.1e-20 Score=109.24 Aligned_cols=49 Identities=18% Similarity=0.076 Sum_probs=45.5
Q ss_pred HHHHHHHHHH-HhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhh
Q psy5909 63 YQLHELERAF-EKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQD 111 (130)
Q Consensus 63 ~q~~~L~~~F-~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~ 111 (130)
.|+.+||..| ..++||+...+.+||.+|||+++||+|||||||+|+|+.
T Consensus 10 ~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 10 QPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp CHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCS
T ss_pred hHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCC
Confidence 4799999999 569999999999999999999999999999999998753
No 69
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=1.5e-19 Score=108.38 Aligned_cols=53 Identities=17% Similarity=0.055 Sum_probs=49.6
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhh
Q psy5909 58 TTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQ 110 (130)
Q Consensus 58 t~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~ 110 (130)
..++..|+..|+..|..++||+..++.+||..+||++++|+|||||||+|.++
T Consensus 8 ~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 8 QPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 34568999999999999999999999999999999999999999999998765
No 70
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.76 E-value=2e-19 Score=125.09 Aligned_cols=61 Identities=20% Similarity=0.147 Sum_probs=57.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhh
Q psy5909 51 KKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQD 111 (130)
Q Consensus 51 ~~~rr~Rt~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~ 111 (130)
.+.++.|+.|+..|+..|+..|..++||+..++..||..+||++++|+|||||||+|+|+.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 4567789999999999999999999999999999999999999999999999999999874
No 71
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.74 E-value=6.3e-19 Score=123.49 Aligned_cols=64 Identities=17% Similarity=0.152 Sum_probs=54.4
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhhhh
Q psy5909 50 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQDIE 113 (130)
Q Consensus 50 ~~~~rr~Rt~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~~~ 113 (130)
..+.++.|+.||..|+..|+..|..++||+...+..||..+||++.+|+|||||||+|+++...
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~ 157 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWL 157 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC--
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCC
Confidence 4466889999999999999999999999999999999999999999999999999999876543
No 72
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.67 E-value=2.8e-17 Score=99.28 Aligned_cols=55 Identities=15% Similarity=0.103 Sum_probs=50.0
Q ss_pred CCCHHHHHHHHHHHH---hhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhhhh
Q psy5909 59 TFTTYQLHELERAFE---KSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQDIE 113 (130)
Q Consensus 59 ~~t~~q~~~L~~~F~---~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~~~ 113 (130)
.|+..|+..|+..|. .++||+..++..||..+||+..||++||||+|+|+++...
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~ 61 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMI 61 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC-
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHH
Confidence 689999999999999 9999999999999999999999999999999999887543
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.65 E-value=1.8e-17 Score=118.86 Aligned_cols=61 Identities=31% Similarity=0.287 Sum_probs=53.3
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhC---------------------CCCCccceechhhhhH
Q psy5909 49 DKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVN---------------------LPEVRVQAVGMLYYSV 107 (130)
Q Consensus 49 ~~~~~rr~Rt~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~---------------------l~~~~VqvWFqNrR~k 107 (130)
..++.||.|+.|+..|+.+|+..|..++||+...|++||..++ |++.+|+|||||||++
T Consensus 111 ~~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~ 190 (194)
T 1ic8_A 111 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 190 (194)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHH
T ss_pred ccccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhh
Confidence 3466789999999999999999999999999999999999999 9999999999999998
Q ss_pred Hh
Q psy5909 108 EL 109 (130)
Q Consensus 108 ~~ 109 (130)
++
T Consensus 191 ~k 192 (194)
T 1ic8_A 191 EA 192 (194)
T ss_dssp CC
T ss_pred hh
Confidence 64
No 74
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=3e-16 Score=94.42 Aligned_cols=47 Identities=13% Similarity=0.086 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHH
Q psy5909 62 TYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVE 108 (130)
Q Consensus 62 ~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~ 108 (130)
..|+..|+.+|..+++|+..++..||..+||+.++|||||||||++.
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~~ 60 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVYQ 60 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhccccc
Confidence 46899999999999999999999999999999999999999999853
No 75
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.59 E-value=4.9e-16 Score=112.88 Aligned_cols=61 Identities=30% Similarity=0.294 Sum_probs=53.3
Q ss_pred CccCCCCCCCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhC---------------------CCCCccceechhhhh
Q psy5909 48 VDKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVN---------------------LPEVRVQAVGMLYYS 106 (130)
Q Consensus 48 ~~~~~~rr~Rt~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~---------------------l~~~~VqvWFqNrR~ 106 (130)
...++.||.|+.|+..|+.+|+..|..++||+..+|++||..+| |++.+|+|||||||+
T Consensus 137 ~~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~ 216 (221)
T 2h8r_A 137 PTNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRK 216 (221)
T ss_dssp -----CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHT
T ss_pred cccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhh
Confidence 44567889999999999999999999999999999999999988 889999999999998
Q ss_pred HH
Q psy5909 107 VE 108 (130)
Q Consensus 107 k~ 108 (130)
+.
T Consensus 217 ~~ 218 (221)
T 2h8r_A 217 EE 218 (221)
T ss_dssp TC
T ss_pred hh
Confidence 63
No 76
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.49 E-value=2e-14 Score=90.80 Aligned_cols=55 Identities=15% Similarity=0.132 Sum_probs=51.4
Q ss_pred CCCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhhh
Q psy5909 58 TTFTTYQLHELERAFEK---SHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQDI 112 (130)
Q Consensus 58 t~~t~~q~~~L~~~F~~---~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~~ 112 (130)
..|+..++..|+.-|.. ++||+..++.+||..+||+..||++||||+|+|+++..
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~ 67 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDM 67 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHH
Confidence 56899999999999988 99999999999999999999999999999999987655
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.48 E-value=6.9e-15 Score=114.36 Aligned_cols=56 Identities=14% Similarity=0.112 Sum_probs=52.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHh
Q psy5909 54 RRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVEL 109 (130)
Q Consensus 54 rr~Rt~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~ 109 (130)
++.++.|+..|+..|+..|+.++||+..+|++||.++||+++||+|||||||+|+|
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 45578899999999999999999999999999999999999999999999999874
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=99.05 E-value=1.9e-11 Score=64.84 Aligned_cols=20 Identities=0% Similarity=-0.401 Sum_probs=17.5
Q ss_pred CccceechhhhhHHhhhhhc
Q psy5909 95 VRVQAVGMLYYSVELQDIEF 114 (130)
Q Consensus 95 ~~VqvWFqNrR~k~~~~~~~ 114 (130)
+||+|||||||+|||+....
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~ 20 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFN 20 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHH
T ss_pred CCceeccHHHHHHHHHHhHH
Confidence 58999999999999887654
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.81 E-value=0.0037 Score=37.17 Aligned_cols=39 Identities=15% Similarity=0.044 Sum_probs=36.4
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechh
Q psy5909 65 LHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGML 103 (130)
Q Consensus 65 ~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqN 103 (130)
...|+.+|...+.+.......|+.+..|+..||+-||-.
T Consensus 18 ~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 18 IQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred chHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 467999999999999999999999999999999999944
No 80
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=78.14 E-value=1.4 Score=26.46 Aligned_cols=51 Identities=10% Similarity=0.105 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhhhhc
Q psy5909 59 TFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQDIEF 114 (130)
Q Consensus 59 ~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~~~~ 114 (130)
.++..+..+|...|.... .-.++|..+|++...|+.+...-|.|.++....
T Consensus 37 ~L~~~~r~vl~l~~~~g~-----s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~~ 87 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRGW-----STAQIATDLGIAEGTVKSRLHYAVRALRLTLQE 87 (92)
T ss_dssp TSCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666665443332 456899999999999999998877777665543
No 81
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=76.94 E-value=1.6 Score=24.08 Aligned_cols=46 Identities=15% Similarity=0.079 Sum_probs=30.6
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechh
Q psy5909 57 RTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGML 103 (130)
Q Consensus 57 Rt~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqN 103 (130)
|..|+.++...+...+ ...........++|..+|++...|.-|...
T Consensus 3 r~~ys~efK~~~~~~~-~~g~s~~~~~~~vA~~~gIs~~tl~~W~~~ 48 (59)
T 2glo_A 3 RRIFTPHFKLQVLESY-RNDNDCKGNQRATARKYNIHRRQIQKWLQC 48 (59)
T ss_dssp CCCCCHHHHHHHHHHH-HHCTTTTTCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHH-HcCCCcchHHHHHHHHHCcCHHHHHHHHHH
Confidence 3468888877664333 333321112568999999999999999743
No 82
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=73.92 E-value=3.4 Score=24.62 Aligned_cols=45 Identities=13% Similarity=0.138 Sum_probs=31.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechh
Q psy5909 54 RRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGML 103 (130)
Q Consensus 54 rr~Rt~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqN 103 (130)
++.+..|+.++...+...+. ... ...++|..+|++...|.-|...
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~-~g~----s~~~iA~~~gIs~sTl~rW~k~ 61 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIH-DGE----SKASVARDIGVPESTLRGWCKN 61 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHH-HTC----CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHH-CCC----CHHHHHHHHCcCHHHHHHHHHH
Confidence 34566888888665555553 222 2457899999999999999843
No 83
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=69.65 E-value=5 Score=25.35 Aligned_cols=48 Identities=15% Similarity=0.175 Sum_probs=36.9
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhh
Q psy5909 56 NRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYS 106 (130)
Q Consensus 56 ~Rt~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~ 106 (130)
.|..||.++...+-..+....... ..++|..+|++...|.-|..++..
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~~~~~ 51 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKRA 51 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHhchhh
Confidence 567899999888877775554443 236789999999999999977664
No 84
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=66.19 E-value=3.2 Score=23.05 Aligned_cols=49 Identities=18% Similarity=-0.000 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhhh
Q psy5909 59 TFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQDI 112 (130)
Q Consensus 59 ~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~~ 112 (130)
.++..+...|...|... ..-.++|..+|++...|+.+...-+.+-++..
T Consensus 15 ~L~~~~r~il~l~~~~g-----~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l 63 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG-----LSYADAAAVCGCPVGTIRSRVARARDALLADA 63 (70)
T ss_dssp SSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHC--
T ss_pred hCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence 46778888887765433 23568899999999999998876666655443
No 85
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=59.23 E-value=6.2 Score=19.74 Aligned_cols=39 Identities=10% Similarity=0.035 Sum_probs=26.9
Q ss_pred CCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceech
Q psy5909 59 TFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGM 102 (130)
Q Consensus 59 ~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFq 102 (130)
.++..+...+...+... + ...++|..+|++...|.-|..
T Consensus 5 ~l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv~~~~~ 43 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLK 43 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHh
Confidence 46676665555545332 2 355789999999999988874
No 86
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=57.14 E-value=0.09 Score=35.86 Aligned_cols=30 Identities=3% Similarity=-0.058 Sum_probs=21.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhhCCCCH
Q psy5909 51 KKHRRNRTTFTTYQLHELERAFEKSHYPDV 80 (130)
Q Consensus 51 ~~~rr~Rt~~t~~q~~~L~~~F~~~~~p~~ 80 (130)
.+.+|.||.|+..|+..|+..|+.++||..
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 345788999999999999999999998864
No 87
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=56.54 E-value=6.5 Score=25.15 Aligned_cols=49 Identities=14% Similarity=0.073 Sum_probs=33.7
Q ss_pred CCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhhhh
Q psy5909 59 TFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQDIE 113 (130)
Q Consensus 59 ~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~~~ 113 (130)
.++..+..+|. .|. ....-.++|..+|++...|+.+...-|.+-++...
T Consensus 109 ~L~~~~r~v~~-~~~-----~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l~ 157 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLI-----RGYSYREIATILSKNLKSIDNTIQRIRKKSEEWIK 157 (164)
T ss_dssp HSCHHHHHHHH-HHT-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHH-----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555 322 22356789999999999999999777777666554
No 88
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=55.83 E-value=5.4 Score=26.06 Aligned_cols=23 Identities=13% Similarity=0.203 Sum_probs=19.7
Q ss_pred HHHHHHHhCCCCCccceechhhh
Q psy5909 83 REELAMKVNLPEVRVQAVGMLYY 105 (130)
Q Consensus 83 r~~La~~l~l~~~~VqvWFqNrR 105 (130)
...+|..+|++..++++|+...|
T Consensus 72 ~~~va~~lg~~~~~~RlW~~~~R 94 (130)
T 2kvr_A 72 VQSLSQTMGFPQDQIRLWPMQAR 94 (130)
T ss_dssp HHHHHHHHCCCGGGCEEEECCCC
T ss_pred HHHHHHHhCCCcccEEEEEeecC
Confidence 46789999999999999997655
No 89
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=54.85 E-value=9.2 Score=24.07 Aligned_cols=48 Identities=15% Similarity=0.005 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhh
Q psy5909 59 TFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQD 111 (130)
Q Consensus 59 ~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~ 111 (130)
.+++.+...|...|.... .-.++|..+|++...|+.|...-|.+-++.
T Consensus 22 ~L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 69 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVYDNIKRTEKILETY 69 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 467777777777654442 456889999999999999998777665544
No 90
>8tfv_A Protein (thanatin); bactericidal, fungicidal, antimicrobial; NMR {Synthetic} SCOP: j.3.1.2
Probab=52.06 E-value=2.3 Score=18.49 Aligned_cols=15 Identities=7% Similarity=-0.192 Sum_probs=11.8
Q ss_pred CCCccceechhhhhH
Q psy5909 93 PEVRVQAVGMLYYSV 107 (130)
Q Consensus 93 ~~~~VqvWFqNrR~k 107 (130)
+...|-|-|+|||.-
T Consensus 2 skkpvpiiycnrrtg 16 (21)
T 8tfv_A 2 SKKPVPIIYCNRRTG 16 (26)
T ss_dssp CCCCCCCEEEEGGGT
T ss_pred CCCcccEEEEcCccc
Confidence 356788999999975
No 91
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=49.86 E-value=9 Score=21.64 Aligned_cols=50 Identities=8% Similarity=-0.058 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHh
Q psy5909 59 TFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVEL 109 (130)
Q Consensus 59 ~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~ 109 (130)
.+++.+..+|...|..... ....-.++|..+|++...|+.+...-+.|-+
T Consensus 10 ~L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4788888888887751100 0113458899999999999988866665554
No 92
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=49.81 E-value=5.8 Score=20.23 Aligned_cols=41 Identities=15% Similarity=0.131 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhh
Q psy5909 60 FTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYY 105 (130)
Q Consensus 60 ~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR 105 (130)
++..+...+...+... . ...++|..+|++...|.-|+....
T Consensus 6 ~~~~~~~~i~~l~~~g--~---s~~~ia~~lgvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 6 INKHEQEQISRLLEKG--H---PRQQLAIIFGIGVSTLYRYFPASS 46 (52)
T ss_dssp SCTTHHHHHHHHHHTT--C---CHHHHHHTTSCCHHHHHHHSCTTC
T ss_pred CCHHHHHHHHHHHHcC--C---CHHHHHHHHCCCHHHHHHHHHHcc
Confidence 4455555444444432 2 356789999999999998885433
No 93
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=49.79 E-value=8.6 Score=23.63 Aligned_cols=45 Identities=13% Similarity=-0.035 Sum_probs=33.5
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhH
Q psy5909 57 RTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSV 107 (130)
Q Consensus 57 Rt~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k 107 (130)
...++..+..+|...+.-. .-.++|..++++...|+.+..+-+.|
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~~~l~ri~~K 76 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTISSQKKSAMMK 76 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 3568999999987754322 24789999999999999888655443
No 94
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=48.08 E-value=7.8 Score=21.59 Aligned_cols=51 Identities=14% Similarity=0.150 Sum_probs=34.0
Q ss_pred CCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhh
Q psy5909 59 TFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQ 110 (130)
Q Consensus 59 ~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~ 110 (130)
.+++.+..+|...|....+ ....-.++|..+|++...|+.+...-+.|-+.
T Consensus 5 ~L~~~er~il~l~~~l~~~-~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~ 55 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 55 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGS
T ss_pred cCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 4677888888777622111 01234678999999999999888665555444
No 95
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=47.63 E-value=53 Score=21.02 Aligned_cols=40 Identities=15% Similarity=0.239 Sum_probs=31.7
Q ss_pred CCCCCCHHHHHHHHHHHHh-----hCCCCHHHHHHHHHHhCCCCC
Q psy5909 56 NRTTFTTYQLHELERAFEK-----SHYPDVYSREELAMKVNLPEV 95 (130)
Q Consensus 56 ~Rt~~t~~q~~~L~~~F~~-----~~~p~~~~r~~La~~l~l~~~ 95 (130)
.|..+|..|+..|+..|.. +-+.+..+...+...+|+...
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 50 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPP 50 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCC
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCcc
Confidence 3567999999999999975 557888888888888886654
No 96
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=47.45 E-value=12 Score=23.47 Aligned_cols=48 Identities=19% Similarity=-0.021 Sum_probs=34.0
Q ss_pred CCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhh
Q psy5909 59 TFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQD 111 (130)
Q Consensus 59 ~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~ 111 (130)
.++..+...|...|.... .-.++|..+|++...|+.+...-|.+-++.
T Consensus 25 ~L~~~~r~vl~l~~~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 72 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLEDY-----SLSEIADTFNVSRQAVYDNIRRTGDLVEDY 72 (113)
T ss_dssp GSCHHHHHHHHHHHTSCC-----CHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 356667666665543332 456889999999999999987777665544
No 97
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=47.41 E-value=17 Score=23.58 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=35.1
Q ss_pred CCCCCCCCHHHHHHHHHHH-HhhCCCCHHHHHHHHH----Hh--CCCCCccceechhh
Q psy5909 54 RRNRTTFTTYQLHELERAF-EKSHYPDVYSREELAM----KV--NLPEVRVQAVGMLY 104 (130)
Q Consensus 54 rr~Rt~~t~~q~~~L~~~F-~~~~~p~~~~r~~La~----~l--~l~~~~VqvWFqNr 104 (130)
++.|..+|.+|...|...+ ..+.-.+-. .||. .+ +++...|.-|..|+
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~---~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQ---DLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHH---HHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHH---HHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 4678899999999999888 555555433 3455 77 77888888888663
No 98
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=46.26 E-value=8.2 Score=25.20 Aligned_cols=50 Identities=12% Similarity=0.056 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhhhh
Q psy5909 59 TFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQDIE 113 (130)
Q Consensus 59 ~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~~~ 113 (130)
.++..+..+|.-.| .....-.++|..+|++...|+.+...-|.+-++...
T Consensus 93 ~Lp~~~r~vl~L~~-----~~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l~ 142 (157)
T 2lfw_A 93 RMTPLSRQALLLTA-----MEGFSPEDAAYLIEVDTSEVETLVTEALAEIEKQTR 142 (157)
T ss_dssp TSCTTHHHHHTTTS-----SSCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHTTSS
T ss_pred hCCHHHHHHHHHHH-----HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 46666666665432 222346789999999999999999777777665544
No 99
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=45.49 E-value=10 Score=22.35 Aligned_cols=51 Identities=12% Similarity=0.066 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhh
Q psy5909 59 TFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQ 110 (130)
Q Consensus 59 ~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~ 110 (130)
.++..+..+|...|..... ....-.++|..+|++...|+.+...-+.|-++
T Consensus 18 ~L~~~er~vl~l~~~l~~~-~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~ 68 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDG-KPKTLEEVGQYFNVTRERIRQIEVKALRKLRH 68 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBT
T ss_pred hCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 4677788888777641100 01135678999999999999888665555433
No 100
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=45.34 E-value=13 Score=25.41 Aligned_cols=50 Identities=10% Similarity=0.044 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhhhh
Q psy5909 59 TFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQDIE 113 (130)
Q Consensus 59 ~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~~~ 113 (130)
.++..+..+|...|... ..-.++|..+|++...|+.+...-|.+-++...
T Consensus 187 ~L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~l~ 236 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYEE-----LPAKEVAKILETSVSRVSQLKAKALERLREMLS 236 (239)
T ss_dssp TSCHHHHHHHHHHHTSC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcC-----CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHh
Confidence 36677777776665332 245689999999999999999777777665543
No 101
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=44.78 E-value=8.6 Score=25.71 Aligned_cols=38 Identities=5% Similarity=-0.035 Sum_probs=28.5
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhh
Q psy5909 67 ELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYY 105 (130)
Q Consensus 67 ~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR 105 (130)
.....|....|-. .....||...|++...+-..|.|+-
T Consensus 36 aa~~lf~~~G~~~-~tv~~IA~~agvs~~t~Y~~F~sK~ 73 (215)
T 2qko_A 36 AAIEVLAREGARG-LTFRAVDVEANVPKGTASNYFPSRD 73 (215)
T ss_dssp HHHHHHHHTCTTT-CCHHHHHHHSSSTTTCHHHHCSCHH
T ss_pred HHHHHHHHhChhh-ccHHHHHHHcCCCcchHHHhCCCHH
Confidence 3444477766643 3456789999999999999999876
No 102
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=42.74 E-value=21 Score=21.15 Aligned_cols=42 Identities=14% Similarity=0.169 Sum_probs=29.1
Q ss_pred CCCCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHhCCCCCccceech
Q psy5909 57 RTTFTTYQLHELERAFEKS-HYPDVYSREELAMKVNLPEVRVQAVGM 102 (130)
Q Consensus 57 Rt~~t~~q~~~L~~~F~~~-~~p~~~~r~~La~~l~l~~~~VqvWFq 102 (130)
|..|+.++....-..+... .+ ....+|..+|++...|.-|..
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g~----s~~~ia~~~gIs~~tl~rW~~ 45 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDGA----SLQQIANDLGINRVTLKNWII 45 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGGS----CHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC----hHHHHHHHHCcCHHHHHHHHH
Confidence 3568888776555545332 22 356789999999999998874
No 103
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=41.95 E-value=15 Score=24.29 Aligned_cols=48 Identities=13% Similarity=-0.029 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHhhhh
Q psy5909 60 FTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVELQDI 112 (130)
Q Consensus 60 ~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~~~~ 112 (130)
++..+..+|...|... ..-.++|..+|++...|+.+...-|.+-++..
T Consensus 141 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l 188 (194)
T 1or7_A 141 LPEDLRMAITLRELDG-----LSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 188 (194)
T ss_dssp SCHHHHHHHHHHHTTC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 4555555554443322 23567999999999999999977777765543
No 104
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=41.49 E-value=13 Score=22.33 Aligned_cols=46 Identities=15% Similarity=0.002 Sum_probs=33.8
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHHh
Q psy5909 58 TTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVEL 109 (130)
Q Consensus 58 t~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~~ 109 (130)
..++..+..+|...+... .-.++|..+|++...|+.+..+-+.|-+
T Consensus 26 ~~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~l~r~~~kL~ 71 (95)
T 3c57_A 26 SGLTDQERTLLGLLSEGL------TNKQIADRMFLAEKTVKNYVSRLLAKLG 71 (95)
T ss_dssp -CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 358888988888753222 3468999999999999988876666543
No 105
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=38.15 E-value=17 Score=22.36 Aligned_cols=27 Identities=4% Similarity=-0.042 Sum_probs=22.7
Q ss_pred HHHHHHHHhCCCCCccceechhhhhHH
Q psy5909 82 SREELAMKVNLPEVRVQAVGMLYYSVE 108 (130)
Q Consensus 82 ~r~~La~~l~l~~~~VqvWFqNrR~k~ 108 (130)
.++.++.+.|++..+.+.+|+.+-.+.
T Consensus 47 LK~~I~~k~Gip~~qQrLif~Gk~LkD 73 (93)
T 3plu_A 47 FKKVLSLQIGTQPNKIVLQKGGSVLKD 73 (93)
T ss_dssp HHHHHHHHHTCCGGGEEEEETTEECCT
T ss_pred HHHHHHHHhCCCHHHEEEEeCCEEccC
Confidence 466789999999999999998877654
No 106
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=37.01 E-value=36 Score=20.46 Aligned_cols=45 Identities=16% Similarity=0.073 Sum_probs=30.3
Q ss_pred CCCCHHHHHHHHHHHHhh--CCCCH-HHHHHHHHHhCCCCCccceech
Q psy5909 58 TTFTTYQLHELERAFEKS--HYPDV-YSREELAMKVNLPEVRVQAVGM 102 (130)
Q Consensus 58 t~~t~~q~~~L~~~F~~~--~~p~~-~~r~~La~~l~l~~~~VqvWFq 102 (130)
..|+.++....-..+... .|.+. .....+|..+|++...|.-|..
T Consensus 5 ~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 5 TRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHH
Confidence 468888776555444332 13332 3566799999999999999974
No 107
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=35.15 E-value=19 Score=20.93 Aligned_cols=45 Identities=11% Similarity=0.079 Sum_probs=33.0
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhH
Q psy5909 57 RTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSV 107 (130)
Q Consensus 57 Rt~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k 107 (130)
-..++..+..+|...+ .. ..-.++|..+|++...|+.+..+-+.|
T Consensus 19 ~~~Lt~~e~~vl~l~~-~g-----~s~~eIA~~l~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 19 VNQLTPRERDILKLIA-QG-----LPNKMIARRLDITESTVKVHVKHMLKK 63 (82)
T ss_dssp GGGSCHHHHHHHHHHT-TT-----CCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HccCCHHHHHHHHHHH-cC-----CCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 3468899988888743 21 245688999999999999887655544
No 108
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=32.51 E-value=60 Score=19.38 Aligned_cols=45 Identities=13% Similarity=0.156 Sum_probs=34.5
Q ss_pred CCCCCHHHHHHHHHHHHh-----hCCCCHHHHHHHHHHhC--CCCCccceec
Q psy5909 57 RTTFTTYQLHELERAFEK-----SHYPDVYSREELAMKVN--LPEVRVQAVG 101 (130)
Q Consensus 57 Rt~~t~~q~~~L~~~F~~-----~~~p~~~~r~~La~~l~--l~~~~VqvWF 101 (130)
...++..++..|...|.. +-+.+..+...+...+| ++...|+-+|
T Consensus 27 ~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~ 78 (100)
T 2lv7_A 27 PVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVII 78 (100)
T ss_dssp CCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 456889999999999875 56788888888888876 4556666666
No 109
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=31.32 E-value=22 Score=20.91 Aligned_cols=44 Identities=16% Similarity=0.029 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhH
Q psy5909 58 TTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSV 107 (130)
Q Consensus 58 t~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k 107 (130)
..++..+..+|...+... .-.++|..+|++...|+.+..+-+.|
T Consensus 28 ~~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~l~r~~~k 71 (91)
T 2rnj_A 28 EMLTEREMEILLLIAKGY------SNQEIASASHITIKTVKTHVSNILSK 71 (91)
T ss_dssp GGCCSHHHHHHHHHHTTC------CTTHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 457888888887743222 23478999999999999888665554
No 110
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=31.27 E-value=22 Score=18.55 Aligned_cols=39 Identities=10% Similarity=0.075 Sum_probs=25.6
Q ss_pred CCC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceech
Q psy5909 59 TFT--TYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGM 102 (130)
Q Consensus 59 ~~t--~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFq 102 (130)
.++ ..+...+...+... + ...++|..+|++...|.-|+.
T Consensus 13 ~l~~~~~~~~~i~~l~~~g-~----s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 13 YVESEDDLVSVAHELAKMG-Y----TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp EECSHHHHHHHHHHHHHTT-C----CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHH
Confidence 355 55555555544322 2 355789999999998887763
No 111
>2jtd_A Myomesin-1, skelemin; immunoglobulin domain, muscle protein, thick filament, immune system, cell adhesion; NMR {Mus musculus}
Probab=31.26 E-value=0.17 Score=33.60 Aligned_cols=44 Identities=18% Similarity=0.258 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechh
Q psy5909 59 TFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGML 103 (130)
Q Consensus 59 ~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqN 103 (130)
.++.+.+..|.+.-..-++|.++.+.+|+..+ |...+|+.|.|=
T Consensus 18 tl~eeeL~rLl~lSheik~P~IpLksel~vEi-LEkG~VRfWlQa 61 (142)
T 2jtd_A 18 SHMEEEMKRLLALSQEHKFPTVPTKSELAVEI-LEKGQVRFWMQA 61 (142)
T ss_dssp ---CCCSHHHHHCCCCCCCSSCSSSCEEEEEE-ETTTEEEEEEEC
T ss_pred eeCHHHHHHHHHhhhhccCCcccchhhhhHHH-HhcCcEEEEEEh
Confidence 45555667777777778889888888877666 677899999974
No 112
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=30.46 E-value=30 Score=18.98 Aligned_cols=44 Identities=14% Similarity=0.040 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhH
Q psy5909 58 TTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSV 107 (130)
Q Consensus 58 t~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k 107 (130)
..++..+...|...+ ..+ .-.++|..+|++...|+.+...-+.|
T Consensus 10 ~~L~~~e~~il~~~~--~g~----s~~eIA~~l~is~~tV~~~~~~~~~k 53 (74)
T 1fse_A 10 PLLTKREREVFELLV--QDK----TTKEIASELFISEKTVRNHISNAMQK 53 (74)
T ss_dssp CCCCHHHHHHHHHHT--TTC----CHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH--cCC----CHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 458888888887732 222 34678999999999998887654443
No 113
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=30.04 E-value=23 Score=19.87 Aligned_cols=43 Identities=7% Similarity=0.084 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhHH
Q psy5909 60 FTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSVE 108 (130)
Q Consensus 60 ~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k~ 108 (130)
++..+..+|...+ ..+ .-.++|..+|++...|+.+..+-+.|.
T Consensus 17 L~~~e~~vl~l~~--~g~----s~~eIA~~l~is~~tV~~~~~r~~~kl 59 (79)
T 1x3u_A 17 LSERERQVLSAVV--AGL----PNKSIAYDLDISPRTVEVHRANVMAKM 59 (79)
T ss_dssp HCHHHHHHHHHHT--TTC----CHHHHHHHTTSCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHH--cCC----CHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 5677777776632 222 345899999999999998876555443
No 114
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=29.76 E-value=32 Score=20.44 Aligned_cols=44 Identities=11% Similarity=0.170 Sum_probs=31.1
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhh
Q psy5909 56 NRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYY 105 (130)
Q Consensus 56 ~Rt~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR 105 (130)
....+|..++.+|...+. .+ .-.++|..|+++...|+....+=+
T Consensus 26 ~~~~Lt~rE~~Vl~l~~~--G~----s~~eIA~~L~iS~~TV~~~~~~i~ 69 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVEK--GF----TNQEIADALHLSKRSIEYSLTSIF 69 (90)
T ss_dssp ---CCCHHHHHHHHHHHT--TC----CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 345689999999887652 21 356889999999999887765543
No 115
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=28.48 E-value=20 Score=24.41 Aligned_cols=48 Identities=10% Similarity=-0.045 Sum_probs=30.9
Q ss_pred CCCCCHHHHH-HHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhh
Q psy5909 57 RTTFTTYQLH-ELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYY 105 (130)
Q Consensus 57 Rt~~t~~q~~-~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR 105 (130)
|...+..++. .....|....|- ......||..+|++...|-..|.||-
T Consensus 22 r~~~tr~~Il~aA~~l~~~~G~~-~~s~~~IA~~aGvs~~tlY~~F~~K~ 70 (211)
T 3fiw_A 22 MTKMNRETVITEALDLLDEVGLD-GVSTRRLAKRLGVEQPSLYWYFRTKR 70 (211)
T ss_dssp --CCCHHHHHHHHHHHHHHHCGG-GCCHHHHHHHHTSCTHHHHTTCSSHH
T ss_pred ccccCHHHHHHHHHHHHHhcCcc-cCCHHHHHHHhCCChhHHHHHcCCHH
Confidence 3445555433 333446655543 23355789999999999999998876
No 116
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=27.29 E-value=39 Score=20.93 Aligned_cols=41 Identities=10% Similarity=0.013 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechh
Q psy5909 58 TTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGML 103 (130)
Q Consensus 58 t~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqN 103 (130)
..++..+...+...+... + ...++|..+|++...|.-|+..
T Consensus 5 ~~~s~~~r~~i~~~~~~G-~----s~~~ia~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp CCCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHc
Confidence 457777776666666433 2 3457899999999999999854
No 117
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=26.86 E-value=43 Score=18.62 Aligned_cols=41 Identities=5% Similarity=-0.108 Sum_probs=30.3
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhh
Q psy5909 58 TTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYY 105 (130)
Q Consensus 58 t~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR 105 (130)
..++...+..+...... ...+||..+|++...|.-|-.+++
T Consensus 9 ~~~~g~~lr~~R~~~gl-------tq~elA~~~gvs~~tis~~E~G~~ 49 (73)
T 3fmy_A 9 ETVAPEFIVKVRKKLSL-------TQKEASEIFGGGVNAFSRYEKGNA 49 (73)
T ss_dssp CCCCHHHHHHHHHHTTC-------CHHHHHHHHCSCTTHHHHHHTTSS
T ss_pred CCCCHHHHHHHHHHcCC-------CHHHHHHHhCcCHHHHHHHHcCCC
Confidence 36788887777654322 356799999999999988887655
No 118
>1w8x_P Protein P16, protein S, GPS; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=26.69 E-value=9.9 Score=23.26 Aligned_cols=11 Identities=0% Similarity=-0.511 Sum_probs=8.3
Q ss_pred cceechhhhhH
Q psy5909 97 VQAVGMLYYSV 107 (130)
Q Consensus 97 VqvWFqNrR~k 107 (130)
|.+||.||-+-
T Consensus 19 iwlwfrnrpaa 29 (117)
T 1w8x_P 19 IWLWFRNRPAA 29 (117)
T ss_dssp HHHHHHHTTCS
T ss_pred HHHHHccChHH
Confidence 56899998753
No 119
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=24.46 E-value=15 Score=19.60 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=19.3
Q ss_pred HHHHHHHhCCCCCccceechhhh
Q psy5909 83 REELAMKVNLPEVRVQAVGMLYY 105 (130)
Q Consensus 83 r~~La~~l~l~~~~VqvWFqNrR 105 (130)
..+||..+|++...|.-|..+++
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999988887654
No 120
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=24.23 E-value=57 Score=22.48 Aligned_cols=49 Identities=4% Similarity=-0.109 Sum_probs=31.0
Q ss_pred CCCCCCHHHHH-HHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhh
Q psy5909 56 NRTTFTTYQLH-ELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYY 105 (130)
Q Consensus 56 ~Rt~~t~~q~~-~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR 105 (130)
.+...+..++. .-...|...-|-.. ....||..+|++...+-..|.||-
T Consensus 12 ~~~~~~r~~Il~aA~~l~~~~G~~~~-s~~~IA~~aGvs~~tlY~hF~~K~ 61 (237)
T 2hxo_A 12 RQEPLSRERIVGAAVELLDTVGERGL-TFRALAERLATGPGAIYWHITGKA 61 (237)
T ss_dssp ----CCHHHHHHHHHHHHHHTTTTTC-CHHHHHHHHTSCGGGGGGTCCCHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCcccC-CHHHHHHHHCCChHHHHHhcCCHH
Confidence 33445555443 33344666655433 455789999999999999999876
No 121
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=24.19 E-value=63 Score=20.49 Aligned_cols=25 Identities=8% Similarity=-0.016 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCCCccceechhhhhH
Q psy5909 83 REELAMKVNLPEVRVQAVGMLYYSV 107 (130)
Q Consensus 83 r~~La~~l~l~~~~VqvWFqNrR~k 107 (130)
....+.+.|++..+|+.||-..|..
T Consensus 67 m~aY~er~Gl~~~~irFlFDG~rI~ 91 (115)
T 3kyd_D 67 KESYCQRQGVPMNSLRFLFEGQRIA 91 (115)
T ss_dssp HHHHHHHHTCCTTSEEEEETTEECC
T ss_pred HHHHHHHhCCChhhEEEEECCeECC
Confidence 3445777899999999999887764
No 122
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=23.50 E-value=17 Score=20.59 Aligned_cols=23 Identities=9% Similarity=-0.028 Sum_probs=20.2
Q ss_pred HHHHHHHhCCCCCccceechhhh
Q psy5909 83 REELAMKVNLPEVRVQAVGMLYY 105 (130)
Q Consensus 83 r~~La~~l~l~~~~VqvWFqNrR 105 (130)
..+||..+|++...|.-|..+++
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 46899999999999999998766
No 123
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=23.35 E-value=55 Score=21.06 Aligned_cols=41 Identities=2% Similarity=-0.040 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechh
Q psy5909 58 TTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGML 103 (130)
Q Consensus 58 t~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqN 103 (130)
..++.++...+...+... + ...++|..+|++...|.-|+..
T Consensus 24 ~~~s~e~r~~ii~l~~~G-~----s~~~IA~~lgis~~TV~rwl~r 64 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAHQG-V----RPCDISRQLRVSHGCVSKILGR 64 (159)
T ss_dssp CSSCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCSHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHH
Confidence 367887777666666432 2 3456899999999999999854
No 124
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=23.21 E-value=16 Score=19.55 Aligned_cols=23 Identities=13% Similarity=0.063 Sum_probs=19.5
Q ss_pred HHHHHHHhCCCCCccceechhhh
Q psy5909 83 REELAMKVNLPEVRVQAVGMLYY 105 (130)
Q Consensus 83 r~~La~~l~l~~~~VqvWFqNrR 105 (130)
..+||..+|++...|.-|..+++
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSET 43 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCCCHHHHHHHHcCCC
Confidence 56799999999999998887755
No 125
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=23.12 E-value=50 Score=20.60 Aligned_cols=23 Identities=4% Similarity=-0.282 Sum_probs=19.3
Q ss_pred HHHHHHHhCCCCCccceechhhh
Q psy5909 83 REELAMKVNLPEVRVQAVGMLYY 105 (130)
Q Consensus 83 r~~La~~l~l~~~~VqvWFqNrR 105 (130)
..+||..+|++...|.-|-.+++
T Consensus 87 q~~la~~~g~s~~~i~~~E~g~~ 109 (133)
T 3o9x_A 87 QKEASEIFGGGVNAFSRYEKGNA 109 (133)
T ss_dssp HHHHHHHHCSCTTHHHHHHHTSS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 45789999999999998887765
No 126
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=23.11 E-value=53 Score=19.69 Aligned_cols=40 Identities=3% Similarity=-0.100 Sum_probs=28.6
Q ss_pred CCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechh
Q psy5909 59 TFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGML 103 (130)
Q Consensus 59 ~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqN 103 (130)
.++.++...+...+.. .+ ...++|..+|++...|.-|+..
T Consensus 17 ~~s~~~r~~i~~~~~~-g~----s~~~ia~~lgis~~Tv~~w~~~ 56 (128)
T 1pdn_C 17 PLPNNIRLKIVEMAAD-GI----RPCVISRQLRVSHGCVSKILNR 56 (128)
T ss_dssp CCCHHHHHHHHHHHHT-TC----CHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc-CC----CHHHHHHHHCcCHHHHHHHHHH
Confidence 5777777666655542 22 2456899999999999999854
No 127
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=22.97 E-value=28 Score=24.25 Aligned_cols=49 Identities=12% Similarity=0.027 Sum_probs=30.9
Q ss_pred CCCCCCHHHHH-HHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhh
Q psy5909 56 NRTTFTTYQLH-ELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYY 105 (130)
Q Consensus 56 ~Rt~~t~~q~~-~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR 105 (130)
.|...+..++. .-...|...-|-. .....||..+|++...|-..|.||-
T Consensus 25 ~~~~~tr~~Il~aA~~l~~~~G~~~-~s~~~IA~~aGvs~~tlY~hF~~K~ 74 (241)
T 2hxi_A 25 GRRRWSTEQILDAAAELLLAGDAET-FSVRKLAASLGTDSSSLYRHFRNKT 74 (241)
T ss_dssp ---CCCHHHHHHHHHHHHSSSSCCC-CCHHHHHHHTTSCHHHHHHHTSSHH
T ss_pred cchhhHHHHHHHHHHHHHHhcCccc-CCHHHHHHHhCcCHHHHHHHcCCHH
Confidence 34455655443 2333355555443 3455789999999999999998876
No 128
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=22.91 E-value=66 Score=18.01 Aligned_cols=25 Identities=4% Similarity=-0.258 Sum_probs=19.8
Q ss_pred HHHHHHHhCCCCCccceechhhhhH
Q psy5909 83 REELAMKVNLPEVRVQAVGMLYYSV 107 (130)
Q Consensus 83 r~~La~~l~l~~~~VqvWFqNrR~k 107 (130)
....+.+.|++..+++.+|..+|..
T Consensus 28 ~~~y~~~~gi~~~~~rf~fdG~~l~ 52 (72)
T 1wm3_A 28 MKAYCERQGLSMRQIRFRFDGQPIN 52 (72)
T ss_dssp HHHHHHHHTCCTTTCEEEETTEECC
T ss_pred HHHHHHHhCCCcceEEEEECCEEcC
Confidence 3445778899999999999887764
No 129
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=22.80 E-value=19 Score=19.13 Aligned_cols=25 Identities=12% Similarity=0.113 Sum_probs=19.8
Q ss_pred HHHHHHHhCCCCCccceechhhhhH
Q psy5909 83 REELAMKVNLPEVRVQAVGMLYYSV 107 (130)
Q Consensus 83 r~~La~~l~l~~~~VqvWFqNrR~k 107 (130)
-.++|..+|++...|+.+..+-+.|
T Consensus 16 ~~eIA~~l~is~~tV~~~~~~~~~k 40 (61)
T 2jpc_A 16 NHGISEKLHISIKTVETHRMNMMRK 40 (61)
T ss_dssp SHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 3578999999999999888665544
No 130
>2jpf_A Hypothetical protein; all alpha helical protein, type III secretion effector protein, structural genomics; NMR {Bordetella parapertussis}
Probab=22.67 E-value=13 Score=23.03 Aligned_cols=10 Identities=10% Similarity=-0.287 Sum_probs=8.0
Q ss_pred Cccceechhh
Q psy5909 95 VRVQAVGMLY 104 (130)
Q Consensus 95 ~~VqvWFqNr 104 (130)
..|+||.||-
T Consensus 52 gdvkvwmqnl 61 (127)
T 2jpf_A 52 GDVKVWMQNL 61 (127)
T ss_dssp HHHHHHHHHH
T ss_pred ccHHHHHHHH
Confidence 3689999984
No 131
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=22.60 E-value=9.6 Score=25.07 Aligned_cols=26 Identities=27% Similarity=0.152 Sum_probs=19.8
Q ss_pred HHHHHhCCCCCccceechhhhhHHhh
Q psy5909 85 ELAMKVNLPEVRVQAVGMLYYSVELQ 110 (130)
Q Consensus 85 ~La~~l~l~~~~VqvWFqNrR~k~~~ 110 (130)
++|..+|++...|+.+...-|.+-++
T Consensus 156 eIA~~lgis~~tV~~~l~ra~~~Lr~ 181 (184)
T 2q1z_A 156 ELAAETGLPLGTIKSRIRLALDRLRQ 181 (184)
T ss_dssp CSTTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 56778889999998888766666544
No 132
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=22.28 E-value=54 Score=21.49 Aligned_cols=39 Identities=15% Similarity=0.154 Sum_probs=28.9
Q ss_pred CCCCCHHHHHHHHHHHHh-----hCCCCHHHHHHHHHHhCCCCC
Q psy5909 57 RTTFTTYQLHELERAFEK-----SHYPDVYSREELAMKVNLPEV 95 (130)
Q Consensus 57 Rt~~t~~q~~~L~~~F~~-----~~~p~~~~r~~La~~l~l~~~ 95 (130)
++.||.+|+..|+..|.. +-+.+..+-..+...+|+...
T Consensus 2 a~~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 45 (176)
T 2lhi_A 2 SSNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPS 45 (176)
T ss_dssp CCCCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHTCCCC
T ss_pred CCcCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCChh
Confidence 456888899999999865 446777777777777776543
No 133
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=22.12 E-value=56 Score=22.59 Aligned_cols=44 Identities=11% Similarity=-0.093 Sum_probs=32.8
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhhH
Q psy5909 58 TTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYSV 107 (130)
Q Consensus 58 t~~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~k 107 (130)
..+|..++.+|.-.+.-. .-.++|..+|++...|+....|-+.|
T Consensus 174 ~~Lt~~e~~vl~~~~~g~------s~~eIa~~l~is~~tV~~~~~~~~~k 217 (236)
T 2q0o_A 174 QMLSPREMLCLVWASKGK------TASVTANLTGINARTVQHYLDKARAK 217 (236)
T ss_dssp GSCCHHHHHHHHHHHTTC------CHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 458888888886643222 34678999999999999888766554
No 134
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=22.09 E-value=34 Score=19.65 Aligned_cols=45 Identities=16% Similarity=0.067 Sum_probs=33.8
Q ss_pred CCCCCHHHHHHHHHHHHh-----hCCCCHHHHHHHHHHhCCCCCccceec
Q psy5909 57 RTTFTTYQLHELERAFEK-----SHYPDVYSREELAMKVNLPEVRVQAVG 101 (130)
Q Consensus 57 Rt~~t~~q~~~L~~~F~~-----~~~p~~~~r~~La~~l~l~~~~VqvWF 101 (130)
-..++..++..|...|.. +.+.+..+...+...+|++...|..+|
T Consensus 18 ~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~ 67 (91)
T 2pmy_A 18 GADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVF 67 (91)
T ss_dssp -CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHH
Confidence 356888899999998865 446777777777888888777776666
No 135
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=21.73 E-value=18 Score=19.63 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=19.3
Q ss_pred HHHHHHHhCCCCCccceechhhh
Q psy5909 83 REELAMKVNLPEVRVQAVGMLYY 105 (130)
Q Consensus 83 r~~La~~l~l~~~~VqvWFqNrR 105 (130)
..+||..+|++...|.-|..+++
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~ 41 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVT 41 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCC
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46799999999999988887655
No 136
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=21.63 E-value=19 Score=19.87 Aligned_cols=23 Identities=13% Similarity=-0.091 Sum_probs=19.5
Q ss_pred HHHHHHHhCCCCCccceechhhh
Q psy5909 83 REELAMKVNLPEVRVQAVGMLYY 105 (130)
Q Consensus 83 r~~La~~l~l~~~~VqvWFqNrR 105 (130)
..+||..+|++...|.-|..+++
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~ 48 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKS 48 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999998887755
No 137
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=21.24 E-value=20 Score=24.33 Aligned_cols=42 Identities=7% Similarity=0.098 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCccceechhhhh
Q psy5909 60 FTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQAVGMLYYS 106 (130)
Q Consensus 60 ~t~~q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFqNrR~ 106 (130)
++..+..+|...|. ....-.++|..+|++...|+.++..-+.
T Consensus 199 L~~~~r~vl~l~~~-----~g~s~~EIA~~lgis~~tV~~~~~ra~~ 240 (243)
T 1l0o_C 199 LDERERLIVYLRYY-----KDQTQSEVASRLGISQVQMSRLEKKILQ 240 (243)
T ss_dssp -----------------------------------------------
T ss_pred CCHHHHHHHHHHHh-----cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45555555554443 2345678999999999999988855443
No 138
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=21.12 E-value=36 Score=27.29 Aligned_cols=23 Identities=13% Similarity=0.203 Sum_probs=19.6
Q ss_pred HHHHHHHhCCCCCccceechhhh
Q psy5909 83 REELAMKVNLPEVRVQAVGMLYY 105 (130)
Q Consensus 83 r~~La~~l~l~~~~VqvWFqNrR 105 (130)
...+|..+|++..++++|....|
T Consensus 52 ~~~va~~lg~~~~~~RlW~~~~R 74 (530)
T 2ylm_A 52 VQSLSQTMGFPQDQIRLWPMQAR 74 (530)
T ss_dssp HHHHHHHHTSCGGGEEEEEEEEC
T ss_pred HHHHHHHhCcCcccEEEEEEEcC
Confidence 56789999999999999996555
No 139
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=20.56 E-value=52 Score=18.54 Aligned_cols=26 Identities=8% Similarity=-0.042 Sum_probs=21.2
Q ss_pred HHHHHHHHhCCCCCccceechhhhhH
Q psy5909 82 SREELAMKVNLPEVRVQAVGMLYYSV 107 (130)
Q Consensus 82 ~r~~La~~l~l~~~~VqvWFqNrR~k 107 (130)
.+..++...+++..+.+++|..+..+
T Consensus 29 lK~~i~~~~~ip~~~qrL~~~g~~L~ 54 (85)
T 3n3k_B 29 VKAKIQDKEGIPPDQQRLIFAGKQLE 54 (85)
T ss_dssp HHHHHHHHHCCCGGGEEEEETBEECC
T ss_pred HHHHHHHHHCCCHHHEEEEECCeECC
Confidence 46667888999999999999876654
No 140
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=20.05 E-value=81 Score=18.09 Aligned_cols=24 Identities=4% Similarity=-0.211 Sum_probs=19.0
Q ss_pred HHHHHHhCCCCCccceechhhhhH
Q psy5909 84 EELAMKVNLPEVRVQAVGMLYYSV 107 (130)
Q Consensus 84 ~~La~~l~l~~~~VqvWFqNrR~k 107 (130)
...+.+.|++..+++.+|-.+|..
T Consensus 36 ~~y~~~~gi~~~~~rf~fdG~~l~ 59 (79)
T 3a4r_A 36 SHYEEAMGLSGHKLSFFFDGTKLS 59 (79)
T ss_dssp HHHHHHHTCTTCCCEEEETTEECC
T ss_pred HHHHHHhCCCcccEEEEECCEEcC
Confidence 335677889999999999887753
Done!