RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5909
(130 letters)
>gnl|CDD|200956 pfam00046, Homeobox, Homeobox domain.
Length = 57
Score = 73.7 bits (182), Expect = 8e-19
Identities = 26/45 (57%), Positives = 31/45 (68%)
Query: 54 RRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 98
RR RTTFT QL ELE+ FEK+ YP REELA K+ L E +V+
Sbjct: 1 RRKRTTFTPEQLEELEKEFEKNRYPSAEEREELAKKLGLTERQVK 45
>gnl|CDD|197696 smart00389, HOX, Homeodomain. DNA-binding factors that are
involved in the transcriptional regulation of key
developmental processes.
Length = 57
Score = 63.4 bits (155), Expect = 8e-15
Identities = 24/45 (53%), Positives = 31/45 (68%)
Query: 54 RRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 98
RR RT+FT QL ELE+ F+K+ YP REELA K+ L E +V+
Sbjct: 2 RRKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVK 46
>gnl|CDD|238039 cd00086, homeodomain, Homeodomain; DNA binding domains involved
in the transcriptional regulation of key eukaryotic
developmental processes; may bind to DNA as monomers or
as homo- and/or heterodimers, in a sequence-specific
manner.
Length = 59
Score = 63.0 bits (154), Expect = 1e-14
Identities = 24/45 (53%), Positives = 30/45 (66%)
Query: 54 RRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 98
RR RT FT QL ELE+ FEK+ YP REELA ++ L E +V+
Sbjct: 1 RRKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVK 45
>gnl|CDD|227863 COG5576, COG5576, Homeodomain-containing transcription factor
[Transcription].
Length = 156
Score = 40.5 bits (95), Expect = 4e-05
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 40 SLSPSLSPVDKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 98
L K +R RTT QL LER FE + YP +R +L++ +N+P VQ
Sbjct: 40 KLERKQDGSSPPKSKRRRTT--DEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQ 96
>gnl|CDD|220102 pfam09073, BUD22, BUD22. BUD22 has been shown in yeast to be a
nuclear protein involved in bud-site selection. It plays
a role in positioning the proximal bud pole signal. More
recently it has been shown to be involved in ribosome
biogenesis.
Length = 424
Score = 29.0 bits (65), Expect = 0.77
Identities = 14/51 (27%), Positives = 21/51 (41%)
Query: 2 NSGNSSSDEQAVSDLRRKPSDTVDSDLEIDDDKCSRGGSLSPSLSPVDKKK 52
+S + E+A S + + +SD + SR S S SP KK
Sbjct: 213 DSSDEEEGEEAPSINYNEDTSESESDESDSEISESRSVSDSEESSPPSKKP 263
>gnl|CDD|223020 PHA03246, PHA03246, large tegument protein UL36; Provisional.
Length = 3095
Score = 27.6 bits (61), Expect = 2.4
Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Query: 21 SDTVDSDLEI-DDDKCSRGGSLSPSLSPVDKKKHRRNRTTFTTYQLHELERAFEKSHYPD 79
SD+ DS + + + S + + D RR+ + L+ L +A EK
Sbjct: 3009 SDSDDSRSTVYNSNSTDTDMSSTSRVIIADTLLTRRDFRKASRGALYALTKACEKIARQI 3068
Query: 80 VYSREELAMKVNLPEVRVQAVGML 103
+R++L +V + + + ML
Sbjct: 3069 TQTRDQLRSRVITLAIEIFKIKML 3092
>gnl|CDD|233224 TIGR00993, 3a0901s04IAP86, chloroplast protein import component
Toc86/159, G and M domains. The long precursor of the
86K protein originally described is proposed to have
three domains. The N-terminal A-domain is acidic,
repetitive, weakly conserved, readily removed by
proteolysis during chloroplast isolation, and not
required for protein translocation. The other domains
are designated G (GTPase) and M (membrane anchor); this
family includes most of the G domain and all of M
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 763
Score = 27.2 bits (60), Expect = 3.0
Identities = 23/112 (20%), Positives = 40/112 (35%), Gaps = 9/112 (8%)
Query: 22 DTVDSDLEIDDDKCSRGGSLSPSLSPVDKKKHRRNRTTFTTYQLHELERAFEKSHYPDVY 81
D DSD+E++D S S + K T Q+ +L + K++ +
Sbjct: 384 DEEDSDIELEDSSDSDEESGEDEYDQLPPFK------PLTKAQMAKLSKEQRKAYLEEYD 437
Query: 82 SREELAMKVNLPEVRVQAVGMLYYSVELQDIEFNIRV---PEPSHPIGLPAP 130
R +L K E + M + E+ ++ E P +P P
Sbjct: 438 YRVKLLQKKQWREELKRMKMMKKFGKEIGELPDGYSEEVDEENGGPAAVPVP 489
>gnl|CDD|173544 PTZ00351, PTZ00351, adenylosuccinate synthetase; Provisional.
Length = 710
Score = 27.3 bits (60), Expect = 3.2
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 10/76 (13%)
Query: 18 RKPSDTVDSDLEIDDDKCSRGGSLSPSLSPV------DKKKHRRNRTTFTTYQLHELERA 71
R+PS V+ ++EI DD+ RG S++P + N T + Y + E
Sbjct: 71 REPS--VEVEVEIIDDEPPRGSQKPLSVAPHTANANNSSGSSKCNAITASDYTFYTNED- 127
Query: 72 FEKSHYPDVYSREELA 87
+K Y + S L
Sbjct: 128 -QKKVYEALRSLRPLP 142
>gnl|CDD|179193 PRK00973, PRK00973, glucose-6-phosphate isomerase; Provisional.
Length = 446
Score = 26.9 bits (60), Expect = 3.7
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 88 MKVNLPEVRVQAVGMLYYSVELQ 110
+K+ L E+ VG L+Y E+Q
Sbjct: 376 VKITLDELNEYTVGQLFYMYEMQ 398
>gnl|CDD|237799 PRK14715, PRK14715, DNA polymerase II large subunit; Provisional.
Length = 1627
Score = 26.3 bits (58), Expect = 6.1
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 65 LHELERAFEKSHYP-DVYSREELAMKVNLPEVRVQAVGMLYYSVELQDIEFNIRVPEPSH 123
L EL F+ Y Y R++ K + ++V + V L DIE I+ P+H
Sbjct: 916 LRELYELFDDEVYENMAYVRKKP--KND---IKVYSFDPENKKVVLTDIEEVIKAQSPNH 970
Query: 124 PI 125
I
Sbjct: 971 LI 972
>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated.
Length = 559
Score = 25.9 bits (58), Expect = 7.2
Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 24/79 (30%)
Query: 61 TTYQLHELE--------------RAFEKSHYPD-VYSREELAMKVNLPEVRVQAVGMLYY 105
Y+L ELE F+ S Y +Y ELA PE+ G L
Sbjct: 100 PAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLY---ELA-----PELATCEPGQL-Q 150
Query: 106 SVELQDIEFNIRVPEPSHP 124
S L ++ I + + HP
Sbjct: 151 SARLPELRRVIFLGDEKHP 169
>gnl|CDD|221269 pfam11854, DUF3374, Protein of unknown function (DUF3374). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria. Proteins in this
family are typically between 665 to 712 amino acids in
length.
Length = 675
Score = 25.7 bits (57), Expect = 7.9
Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 8/71 (11%)
Query: 16 LRRKPSDTVDSDLEIDDDKCSRGGSLSPSLSPVDKKKHRRNRTTF-TTYQLHELERAFEK 74
+ S++ S + L SL+ VD +R R Y L + +
Sbjct: 130 IAHYDSNSALSPYNWQTAGSTGMLLLQGSLNTVDLGL-KRERFGLGFEYTGESLWKVYVN 188
Query: 75 SHYPDVYSREE 85
YS E+
Sbjct: 189 ------YSHED 193
>gnl|CDD|217090 pfam02536, mTERF, mTERF. This family contains one sequence of
known function Human mitochondrial transcription
termination factor (mTERF) the rest of the family
consists of hypothetical proteins none of which have any
functional information. mTERF is a multizipper protein
possessing three putative leucine zippers one of which
is bipartite. The protein binds DNA as a monomer. The
leucine zippers are not implicated in a dimerisation
role as in other leucine zippers.
Length = 345
Score = 25.9 bits (57), Expect = 8.1
Identities = 11/49 (22%), Positives = 19/49 (38%)
Query: 43 PSLSPVDKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVN 91
P L +KK + + T L E +K YS +++ K+
Sbjct: 200 PELLGSSEKKKLQTQEILKTCGLLEFLSVIKKMPQFVSYSEQKILNKIE 248
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.311 0.130 0.366
Gapped
Lambda K H
0.267 0.0734 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,718,387
Number of extensions: 589981
Number of successful extensions: 327
Number of sequences better than 10.0: 1
Number of HSP's gapped: 326
Number of HSP's successfully gapped: 24
Length of query: 130
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 44
Effective length of database: 7,123,158
Effective search space: 313418952
Effective search space used: 313418952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (24.2 bits)