Query psy5910
Match_columns 225
No_of_seqs 193 out of 1857
Neff 9.6
Searched_HMMs 46136
Date Fri Aug 16 21:33:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5910.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5910hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1219 ClpX ATP-dependent pro 100.0 3.8E-45 8.2E-50 288.7 14.8 222 2-225 58-288 (408)
2 KOG0745|consensus 100.0 2.8E-37 6.1E-42 252.6 13.8 222 2-225 142-429 (564)
3 PRK05342 clpX ATP-dependent pr 100.0 1.1E-35 2.4E-40 250.9 12.2 222 2-225 68-299 (412)
4 COG1222 RPT1 ATP-dependent 26S 100.0 7.2E-36 1.6E-40 239.7 8.4 171 5-204 151-326 (406)
5 TIGR00382 clpX endopeptidase C 100.0 1.1E-34 2.4E-39 243.6 12.5 222 2-225 74-305 (413)
6 KOG0738|consensus 100.0 3.3E-33 7.3E-38 226.1 8.8 174 6-204 213-386 (491)
7 KOG0730|consensus 100.0 5.1E-33 1.1E-37 237.9 5.8 171 5-204 434-606 (693)
8 KOG0733|consensus 100.0 3.1E-32 6.7E-37 230.9 6.5 171 5-204 511-683 (802)
9 KOG0739|consensus 100.0 7.3E-31 1.6E-35 206.4 11.5 170 6-204 134-303 (439)
10 KOG0736|consensus 100.0 5.6E-31 1.2E-35 228.1 8.7 174 5-204 672-847 (953)
11 KOG0733|consensus 100.0 5.9E-31 1.3E-35 223.2 7.5 174 5-204 190-365 (802)
12 COG1223 Predicted ATPase (AAA+ 100.0 1.1E-29 2.4E-34 196.3 5.3 168 5-204 121-288 (368)
13 KOG0727|consensus 100.0 2.7E-29 5.7E-34 193.8 7.0 172 6-204 156-330 (408)
14 KOG0734|consensus 100.0 3.4E-29 7.5E-34 209.8 7.6 178 4-211 303-484 (752)
15 KOG0728|consensus 100.0 4.7E-29 1E-33 192.3 6.2 173 5-204 147-322 (404)
16 KOG0652|consensus 99.9 3.1E-28 6.6E-33 188.8 8.2 173 5-204 171-346 (424)
17 KOG0737|consensus 99.9 2.1E-27 4.5E-32 191.9 7.4 174 5-204 92-265 (386)
18 KOG0726|consensus 99.9 1.5E-27 3.4E-32 187.2 5.9 174 5-204 185-360 (440)
19 KOG0735|consensus 99.9 5.5E-27 1.2E-31 202.0 8.2 171 5-204 667-839 (952)
20 KOG0731|consensus 99.9 1.1E-26 2.5E-31 204.1 7.4 173 4-204 310-486 (774)
21 COG0464 SpoVK ATPases of the A 99.9 1.4E-26 3E-31 202.2 7.8 171 5-204 242-414 (494)
22 TIGR00390 hslU ATP-dependent p 99.9 2.4E-26 5.2E-31 191.2 8.8 189 2-204 9-337 (441)
23 PRK05201 hslU ATP-dependent pr 99.9 1.9E-26 4.2E-31 191.9 7.9 189 2-204 12-339 (443)
24 TIGR03689 pup_AAA proteasome A 99.9 8.5E-27 1.8E-31 200.4 5.5 175 6-204 183-369 (512)
25 PTZ00454 26S protease regulato 99.9 5.2E-26 1.1E-30 191.8 6.3 173 5-204 145-320 (398)
26 KOG0729|consensus 99.9 7E-26 1.5E-30 176.2 6.3 172 6-204 178-352 (435)
27 TIGR01243 CDC48 AAA family ATP 99.9 1.2E-25 2.6E-30 204.0 7.9 172 5-204 453-626 (733)
28 CHL00195 ycf46 Ycf46; Provisio 99.9 3.3E-25 7.2E-30 190.7 9.7 167 5-204 228-396 (489)
29 PLN00020 ribulose bisphosphate 99.9 2.7E-25 5.8E-30 181.5 8.1 152 39-204 147-302 (413)
30 KOG0651|consensus 99.9 1.3E-24 2.9E-29 171.8 10.1 174 5-204 132-307 (388)
31 COG0465 HflB ATP-dependent Zn 99.9 5.7E-25 1.2E-29 190.2 7.7 172 5-204 150-324 (596)
32 PRK03992 proteasome-activating 99.9 3.1E-25 6.8E-30 187.6 6.0 174 5-204 131-306 (389)
33 KOG0740|consensus 99.9 1.8E-24 3.8E-29 180.3 9.3 172 5-204 153-324 (428)
34 TIGR01241 FtsH_fam ATP-depende 99.9 7.6E-25 1.6E-29 191.0 5.7 172 5-204 55-229 (495)
35 PTZ00361 26 proteosome regulat 99.9 1.2E-24 2.6E-29 184.8 6.6 173 5-204 183-358 (438)
36 COG1220 HslU ATP-dependent pro 99.9 4.3E-24 9.3E-29 170.8 5.8 189 2-204 12-340 (444)
37 CHL00176 ftsH cell division pr 99.9 2.3E-23 4.9E-28 184.5 6.4 172 5-204 183-357 (638)
38 TIGR01242 26Sp45 26S proteasom 99.9 5E-23 1.1E-27 173.3 5.4 174 5-204 122-297 (364)
39 COG0466 Lon ATP-dependent Lon 99.9 1.3E-21 2.9E-26 169.7 9.2 188 2-223 320-520 (782)
40 KOG0730|consensus 99.9 7.4E-22 1.6E-26 169.7 7.4 170 5-204 184-355 (693)
41 PF00004 AAA: ATPase family as 99.9 4.8E-21 1.1E-25 138.4 9.9 129 43-198 1-131 (132)
42 PF05496 RuvB_N: Holliday junc 99.8 2.8E-22 6.1E-27 154.0 2.9 153 3-201 23-182 (233)
43 PRK10733 hflB ATP-dependent me 99.8 1.2E-21 2.6E-26 175.0 6.8 171 6-204 153-326 (644)
44 TIGR01243 CDC48 AAA family ATP 99.8 1.3E-21 2.8E-26 177.9 7.0 170 6-204 179-350 (733)
45 KOG0732|consensus 99.8 8.6E-22 1.9E-26 177.8 5.6 171 5-204 265-442 (1080)
46 KOG0744|consensus 99.8 1.5E-21 3.2E-26 155.5 5.8 144 38-204 175-331 (423)
47 COG0542 clpA ATP-binding subun 99.8 1.9E-21 4.2E-26 172.4 7.0 142 2-172 488-643 (786)
48 KOG2004|consensus 99.8 5.9E-21 1.3E-25 165.3 8.1 192 2-225 408-610 (906)
49 CHL00206 ycf2 Ycf2; Provisiona 99.8 9.4E-21 2E-25 178.3 9.3 136 39-204 1629-1808(2281)
50 PF07724 AAA_2: AAA domain (Cd 99.8 2E-21 4.2E-26 146.4 3.3 132 39-188 2-137 (171)
51 CHL00181 cbbX CbbX; Provisiona 99.8 9.7E-21 2.1E-25 153.9 7.3 173 2-204 20-200 (287)
52 KOG0741|consensus 99.8 1.8E-20 3.8E-25 157.7 8.3 143 40-204 256-405 (744)
53 PRK11034 clpA ATP-dependent Cl 99.8 2E-20 4.2E-25 168.6 8.6 174 2-204 455-657 (758)
54 TIGR02880 cbbX_cfxQ probable R 99.8 1.4E-20 3.1E-25 152.9 6.7 173 2-204 19-199 (284)
55 TIGR00763 lon ATP-dependent pr 99.8 2.8E-20 6.2E-25 169.7 9.0 187 2-221 317-515 (775)
56 KOG0742|consensus 99.8 4.8E-20 1E-24 151.1 8.9 138 38-204 382-519 (630)
57 TIGR02881 spore_V_K stage V sp 99.8 4.2E-20 9.1E-25 148.8 7.6 168 6-204 7-182 (261)
58 COG2255 RuvB Holliday junction 99.8 4.5E-20 9.8E-25 144.9 5.5 152 7-203 28-186 (332)
59 TIGR02639 ClpA ATP-dependent C 99.8 1.8E-19 3.9E-24 163.6 9.5 174 2-204 451-653 (731)
60 COG0714 MoxR-like ATPases [Gen 99.8 1.9E-19 4.2E-24 149.6 7.1 169 2-204 21-195 (329)
61 PRK10787 DNA-binding ATP-depen 99.8 5.6E-19 1.2E-23 160.2 9.9 187 2-221 319-516 (784)
62 TIGR01650 PD_CobS cobaltochela 99.8 4.2E-19 9.1E-24 144.6 5.4 156 40-210 64-232 (327)
63 COG2256 MGS1 ATPase related to 99.8 1.7E-18 3.6E-23 142.0 7.7 105 41-191 49-155 (436)
64 TIGR02640 gas_vesic_GvpN gas v 99.7 1.2E-17 2.6E-22 134.5 10.5 155 39-210 20-197 (262)
65 KOG0743|consensus 99.7 1.6E-18 3.4E-23 144.2 5.4 166 6-204 202-374 (457)
66 CHL00095 clpC Clp protease ATP 99.7 1.1E-17 2.4E-22 153.6 8.8 142 2-172 506-661 (821)
67 PRK00080 ruvB Holliday junctio 99.7 2.7E-17 5.8E-22 136.8 9.9 157 5-204 25-184 (328)
68 PF00158 Sigma54_activat: Sigm 99.7 1.3E-17 2.7E-22 125.3 6.1 145 7-197 1-160 (168)
69 TIGR02639 ClpA ATP-dependent C 99.7 2.9E-17 6.3E-22 149.3 9.5 156 6-204 183-349 (731)
70 TIGR00635 ruvB Holliday juncti 99.7 3.2E-17 6.9E-22 135.0 8.9 154 6-204 5-163 (305)
71 TIGR03345 VI_ClpV1 type VI sec 99.7 1.8E-17 3.9E-22 151.9 8.1 143 2-173 563-719 (852)
72 PF07728 AAA_5: AAA domain (dy 99.7 2.1E-18 4.4E-23 126.1 -0.3 133 42-191 1-139 (139)
73 PF01078 Mg_chelatase: Magnesi 99.7 1.6E-17 3.4E-22 126.9 4.1 167 5-202 3-204 (206)
74 TIGR03346 chaperone_ClpB ATP-d 99.7 5.4E-17 1.2E-21 149.5 8.3 174 2-204 562-767 (852)
75 CHL00081 chlI Mg-protoporyphyr 99.7 9.7E-17 2.1E-21 132.7 8.6 159 5-199 17-219 (350)
76 PF07726 AAA_3: ATPase family 99.7 6.5E-18 1.4E-22 118.9 1.3 129 42-192 1-130 (131)
77 PRK13407 bchI magnesium chelat 99.7 7.6E-17 1.7E-21 133.0 7.2 163 5-202 8-204 (334)
78 COG3604 FhlA Transcriptional r 99.7 3.1E-17 6.8E-22 137.8 4.9 149 6-193 224-380 (550)
79 COG2204 AtoC Response regulato 99.7 3.2E-17 6.9E-22 139.0 4.7 152 3-193 139-298 (464)
80 PRK10865 protein disaggregatio 99.7 2.4E-16 5.1E-21 145.0 9.6 174 2-204 565-770 (857)
81 PRK07940 DNA polymerase III su 99.7 3.7E-16 8.1E-21 131.9 9.1 163 1-204 1-180 (394)
82 COG3829 RocR Transcriptional r 99.7 7.6E-17 1.6E-21 137.0 4.8 151 5-194 245-404 (560)
83 PRK12323 DNA polymerase III su 99.6 6.5E-16 1.4E-20 135.3 9.2 143 5-204 16-187 (700)
84 PRK13531 regulatory ATPase Rav 99.6 2.3E-16 5.1E-21 134.3 6.1 160 2-201 17-181 (498)
85 PRK13342 recombination factor 99.6 5.3E-16 1.1E-20 132.7 8.2 138 6-204 13-155 (413)
86 PRK14956 DNA polymerase III su 99.6 7.2E-16 1.6E-20 131.6 8.9 140 5-202 18-182 (484)
87 TIGR02030 BchI-ChlI magnesium 99.6 5.1E-16 1.1E-20 128.4 7.3 163 5-202 4-207 (337)
88 PHA02244 ATPase-like protein 99.6 8.9E-16 1.9E-20 126.6 8.3 137 40-199 119-262 (383)
89 PRK14962 DNA polymerase III su 99.6 1.1E-15 2.3E-20 131.9 9.0 143 5-204 14-180 (472)
90 TIGR02902 spore_lonB ATP-depen 99.6 5.1E-16 1.1E-20 136.2 6.7 161 6-204 66-267 (531)
91 KOG0989|consensus 99.6 4E-16 8.7E-21 123.9 5.5 139 5-193 36-182 (346)
92 PRK11034 clpA ATP-dependent Cl 99.6 1.4E-15 2.9E-20 137.5 9.5 156 6-204 187-353 (758)
93 PLN03025 replication factor C 99.6 1.1E-15 2.4E-20 126.6 7.9 143 6-204 14-162 (319)
94 PRK10865 protein disaggregatio 99.6 1.2E-15 2.7E-20 140.3 8.9 156 6-204 179-345 (857)
95 TIGR02442 Cob-chelat-sub cobal 99.6 9.5E-16 2.1E-20 137.2 7.5 161 5-201 4-201 (633)
96 TIGR03345 VI_ClpV1 type VI sec 99.6 1.8E-15 3.9E-20 138.9 9.0 157 5-204 187-354 (852)
97 PRK07994 DNA polymerase III su 99.6 2.6E-15 5.5E-20 132.9 9.3 142 5-204 16-182 (647)
98 PRK07003 DNA polymerase III su 99.6 2.2E-15 4.7E-20 133.7 8.8 143 5-204 16-182 (830)
99 PRK14949 DNA polymerase III su 99.6 4.9E-15 1.1E-19 133.6 9.6 150 5-204 16-182 (944)
100 KOG1051|consensus 99.6 3.1E-15 6.6E-20 135.0 8.2 142 2-173 559-711 (898)
101 PRK14958 DNA polymerase III su 99.6 5.6E-15 1.2E-19 128.7 9.2 141 5-203 16-181 (509)
102 CHL00095 clpC Clp protease ATP 99.6 5.6E-15 1.2E-19 135.9 9.4 155 6-204 180-345 (821)
103 COG1221 PspF Transcriptional r 99.6 1.9E-15 4.1E-20 126.2 5.7 160 5-203 78-252 (403)
104 smart00350 MCM minichromosome 99.6 1.1E-15 2.4E-20 133.7 4.3 180 3-203 201-392 (509)
105 PRK14961 DNA polymerase III su 99.6 1E-14 2.2E-19 122.8 9.8 148 5-204 16-182 (363)
106 PRK14960 DNA polymerase III su 99.6 9.3E-15 2E-19 128.3 9.6 143 5-204 15-181 (702)
107 KOG2028|consensus 99.6 2.4E-15 5.2E-20 122.2 4.4 114 41-200 163-282 (554)
108 PRK14964 DNA polymerase III su 99.5 2.6E-14 5.7E-19 123.1 9.7 143 5-204 13-179 (491)
109 TIGR03346 chaperone_ClpB ATP-d 99.5 1.4E-14 3E-19 133.7 8.1 156 6-204 174-340 (852)
110 TIGR02974 phageshock_pspF psp 99.5 3.3E-14 7.2E-19 117.9 9.4 166 7-202 1-174 (329)
111 PRK06645 DNA polymerase III su 99.5 3.3E-14 7.2E-19 123.3 9.5 151 5-204 21-191 (507)
112 PRK04195 replication factor C 99.5 2.1E-14 4.5E-19 125.2 8.1 147 6-204 15-164 (482)
113 TIGR00368 Mg chelatase-related 99.5 2.2E-14 4.8E-19 124.4 7.8 165 5-200 192-391 (499)
114 PRK14952 DNA polymerase III su 99.5 4.2E-14 9.1E-19 124.5 9.5 147 5-203 13-180 (584)
115 PRK14957 DNA polymerase III su 99.5 4.2E-14 9E-19 123.5 9.4 143 5-204 16-182 (546)
116 PRK05896 DNA polymerase III su 99.5 6.1E-14 1.3E-18 122.8 10.1 142 6-204 17-182 (605)
117 cd00009 AAA The AAA+ (ATPases 99.5 9.2E-14 2E-18 101.3 9.4 145 9-198 2-150 (151)
118 PHA02544 44 clamp loader, smal 99.5 4.6E-14 1E-18 116.8 8.7 143 5-204 21-164 (316)
119 PRK14969 DNA polymerase III su 99.5 4.3E-14 9.3E-19 123.9 8.6 149 5-204 16-182 (527)
120 PRK14959 DNA polymerase III su 99.5 6.9E-14 1.5E-18 123.0 9.8 142 6-204 17-182 (624)
121 PRK07764 DNA polymerase III su 99.5 6E-14 1.3E-18 127.8 9.6 147 5-203 15-182 (824)
122 PRK08691 DNA polymerase III su 99.5 5.9E-14 1.3E-18 124.2 8.7 149 5-203 16-181 (709)
123 PRK15424 propionate catabolism 99.5 5.2E-14 1.1E-18 122.9 8.2 137 6-172 220-372 (538)
124 PRK14963 DNA polymerase III su 99.5 5.8E-14 1.2E-18 122.2 8.2 141 6-204 15-179 (504)
125 PRK11608 pspF phage shock prot 99.5 8.2E-14 1.8E-18 115.6 8.8 171 2-202 3-181 (326)
126 PRK09862 putative ATP-dependen 99.5 5.8E-14 1.3E-18 121.4 7.9 147 40-201 210-389 (506)
127 PRK07133 DNA polymerase III su 99.5 9.7E-14 2.1E-18 123.8 9.5 151 5-204 18-181 (725)
128 PRK14951 DNA polymerase III su 99.5 8.7E-14 1.9E-18 123.0 9.1 141 5-203 16-186 (618)
129 PRK14965 DNA polymerase III su 99.5 1E-13 2.2E-18 122.8 9.4 148 5-203 16-181 (576)
130 COG1239 ChlI Mg-chelatase subu 99.5 1.5E-13 3.3E-18 114.1 9.5 165 3-202 15-220 (423)
131 PF05673 DUF815: Protein of un 99.5 9.1E-14 2E-18 108.5 7.7 153 5-204 27-198 (249)
132 PRK05563 DNA polymerase III su 99.5 1.2E-13 2.6E-18 121.9 9.0 143 5-204 16-182 (559)
133 PRK13341 recombination factor 99.5 9.3E-14 2E-18 125.2 8.1 138 6-204 29-172 (725)
134 PTZ00111 DNA replication licen 99.5 6.1E-14 1.3E-18 126.9 5.9 180 4-204 449-648 (915)
135 PRK11331 5-methylcytosine-spec 99.5 2.8E-13 6.1E-18 114.7 9.3 136 39-194 193-353 (459)
136 TIGR02329 propionate_PrpR prop 99.5 1.7E-13 3.8E-18 119.7 8.1 137 6-172 213-357 (526)
137 TIGR02397 dnaX_nterm DNA polym 99.5 3.1E-13 6.7E-18 113.6 9.4 147 6-204 15-180 (355)
138 TIGR01817 nifA Nif-specific re 99.5 1.8E-13 4E-18 120.8 8.3 139 4-172 195-340 (534)
139 PRK14955 DNA polymerase III su 99.5 3.5E-13 7.6E-18 114.7 9.5 150 5-204 16-190 (397)
140 TIGR02031 BchD-ChlD magnesium 99.5 1.6E-13 3.4E-18 121.8 7.6 143 40-202 16-164 (589)
141 TIGR02903 spore_lon_C ATP-depe 99.4 2.8E-13 6.1E-18 120.8 8.7 115 5-146 154-293 (615)
142 PRK14953 DNA polymerase III su 99.4 4.5E-13 9.9E-18 116.2 9.6 150 5-204 16-182 (486)
143 PRK06305 DNA polymerase III su 99.4 4.5E-13 9.7E-18 115.5 9.2 148 6-204 18-184 (451)
144 PRK14948 DNA polymerase III su 99.4 4.9E-13 1.1E-17 119.0 9.7 149 5-203 16-183 (620)
145 PRK06647 DNA polymerase III su 99.4 5.2E-13 1.1E-17 117.6 9.5 149 5-204 16-182 (563)
146 COG0606 Predicted ATPase with 99.4 5.8E-14 1.3E-18 118.1 3.3 164 5-201 179-380 (490)
147 smart00763 AAA_PrkA PrkA AAA d 99.4 2.8E-13 6.1E-18 111.9 7.2 176 3-204 49-319 (361)
148 PRK05022 anaerobic nitric oxid 99.4 5.4E-13 1.2E-17 117.0 9.3 138 5-172 187-331 (509)
149 PRK12402 replication factor C 99.4 3.6E-13 7.8E-18 112.3 7.8 150 5-204 15-188 (337)
150 PRK09111 DNA polymerase III su 99.4 7.8E-13 1.7E-17 117.0 9.4 148 5-204 24-195 (598)
151 PRK08451 DNA polymerase III su 99.4 5.8E-13 1.3E-17 115.9 8.4 142 5-204 14-180 (535)
152 TIGR00764 lon_rel lon-related 99.4 3.8E-13 8.2E-18 119.6 7.4 49 3-67 16-64 (608)
153 KOG0991|consensus 99.4 3E-13 6.5E-18 104.0 5.4 109 5-145 27-140 (333)
154 PRK14954 DNA polymerase III su 99.4 1.4E-12 2.9E-17 115.8 10.0 151 5-204 16-190 (620)
155 COG0470 HolB ATPase involved i 99.4 1.3E-12 2.8E-17 108.4 9.1 145 6-203 2-171 (325)
156 PRK10820 DNA-binding transcrip 99.4 9.5E-13 2.1E-17 115.6 8.7 131 5-172 204-348 (520)
157 PRK14970 DNA polymerase III su 99.4 7.1E-13 1.5E-17 112.0 7.6 149 6-204 18-171 (367)
158 PRK11388 DNA-binding transcrip 99.4 9.2E-13 2E-17 118.7 8.0 130 6-172 326-466 (638)
159 PRK13406 bchD magnesium chelat 99.4 8.4E-13 1.8E-17 116.4 7.2 142 41-202 26-171 (584)
160 PRK14950 DNA polymerase III su 99.4 3E-12 6.5E-17 113.9 9.8 149 5-203 16-182 (585)
161 PRK09112 DNA polymerase III su 99.3 5.5E-12 1.2E-16 105.3 9.6 150 5-204 23-204 (351)
162 PRK05564 DNA polymerase III su 99.3 2.5E-12 5.5E-17 106.3 7.5 154 1-204 1-156 (313)
163 PRK15429 formate hydrogenlyase 99.3 3.6E-12 7.8E-17 115.7 8.9 137 6-172 377-520 (686)
164 KOG0736|consensus 99.3 5.3E-12 1.1E-16 111.1 9.2 136 41-204 432-567 (953)
165 PF14532 Sigma54_activ_2: Sigm 99.3 1.1E-12 2.4E-17 95.7 4.0 132 8-198 1-136 (138)
166 PRK08058 DNA polymerase III su 99.3 4.4E-12 9.5E-17 105.4 8.0 151 4-204 4-173 (329)
167 PTZ00112 origin recognition co 99.3 7.8E-12 1.7E-16 112.4 9.7 159 5-204 755-940 (1164)
168 TIGR00678 holB DNA polymerase 99.3 1.6E-11 3.4E-16 94.2 10.2 120 42-204 16-159 (188)
169 TIGR02928 orc1/cdc6 family rep 99.3 5.3E-12 1.2E-16 106.5 8.1 161 5-204 15-203 (365)
170 TIGR03420 DnaA_homol_Hda DnaA 99.3 7.7E-12 1.7E-16 98.6 8.2 144 3-204 14-163 (226)
171 PF13177 DNA_pol3_delta2: DNA 99.3 1.4E-11 2.9E-16 92.3 9.0 130 9-191 1-153 (162)
172 PRK05707 DNA polymerase III su 99.3 1.3E-11 2.8E-16 102.2 9.6 122 42-204 24-169 (328)
173 PRK00411 cdc6 cell division co 99.3 1.1E-11 2.4E-16 105.6 9.6 160 5-204 30-211 (394)
174 smart00382 AAA ATPases associa 99.3 2.4E-11 5.2E-16 87.7 10.0 76 41-120 3-93 (148)
175 PRK00440 rfc replication facto 99.3 7.2E-12 1.6E-16 103.7 8.0 142 6-204 18-165 (319)
176 PRK07471 DNA polymerase III su 99.3 1.7E-11 3.7E-16 102.9 9.9 149 5-204 19-204 (365)
177 PRK14971 DNA polymerase III su 99.3 1.2E-11 2.6E-16 110.2 9.4 149 5-204 17-184 (614)
178 COG2812 DnaX DNA polymerase II 99.3 3.6E-12 7.8E-17 109.9 4.6 139 5-191 16-170 (515)
179 PRK07399 DNA polymerase III su 99.3 2.2E-11 4.8E-16 100.3 8.9 151 4-204 3-186 (314)
180 KOG0735|consensus 99.3 1.3E-11 2.8E-16 108.0 7.6 142 38-204 429-577 (952)
181 COG0542 clpA ATP-binding subun 99.2 4.1E-11 8.9E-16 107.3 9.6 171 5-219 170-353 (786)
182 PRK08084 DNA replication initi 99.2 6.2E-11 1.3E-15 94.1 9.2 121 41-204 46-171 (235)
183 PRK00149 dnaA chromosomal repl 99.2 1.6E-11 3.4E-16 106.4 6.1 129 41-204 149-284 (450)
184 PRK06893 DNA replication initi 99.2 7.9E-11 1.7E-15 93.1 9.1 118 41-204 40-165 (229)
185 PRK13765 ATP-dependent proteas 99.2 7.6E-11 1.6E-15 105.0 9.5 48 3-66 29-76 (637)
186 PRK08727 hypothetical protein; 99.2 1.2E-10 2.6E-15 92.3 9.0 145 2-204 17-166 (233)
187 COG1224 TIP49 DNA helicase TIP 99.2 7.8E-11 1.7E-15 95.9 7.8 65 4-77 38-104 (450)
188 COG3283 TyrR Transcriptional r 99.2 8.2E-11 1.8E-15 95.9 7.5 110 38-172 225-343 (511)
189 PF06068 TIP49: TIP49 C-termin 99.2 8.9E-11 1.9E-15 96.6 7.6 66 4-78 23-90 (398)
190 PRK10923 glnG nitrogen regulat 99.1 7.6E-11 1.6E-15 102.8 7.0 109 39-172 160-282 (469)
191 KOG1969|consensus 99.1 1.1E-10 2.5E-15 102.4 7.5 139 42-204 328-472 (877)
192 KOG2170|consensus 99.1 5.1E-11 1.1E-15 94.9 4.8 118 3-144 80-204 (344)
193 COG1474 CDC6 Cdc6-related prot 99.1 1.9E-10 4.1E-15 96.5 8.5 158 5-204 17-194 (366)
194 PRK08903 DnaA regulatory inact 99.1 1.6E-10 3.4E-15 91.3 7.7 115 40-204 42-161 (227)
195 TIGR00362 DnaA chromosomal rep 99.1 5.8E-11 1.3E-15 101.6 5.4 129 41-204 137-272 (405)
196 PRK06526 transposase; Provisio 99.1 5.9E-11 1.3E-15 95.0 4.9 129 40-201 98-235 (254)
197 COG1241 MCM2 Predicted ATPase 99.1 2.1E-11 4.5E-16 108.1 2.4 181 5-204 286-474 (682)
198 COG2607 Predicted ATPase (AAA+ 99.1 2E-10 4.3E-15 88.9 7.1 152 6-204 61-230 (287)
199 PRK08181 transposase; Validate 99.1 8.3E-11 1.8E-15 94.7 5.3 129 40-201 106-243 (269)
200 TIGR02915 PEP_resp_reg putativ 99.1 3.4E-10 7.4E-15 98.0 9.3 116 39-172 161-283 (445)
201 PF00493 MCM: MCM2/3/5 family 99.1 5.4E-12 1.2E-16 104.9 -2.0 179 6-203 25-211 (331)
202 PRK06964 DNA polymerase III su 99.1 5.5E-10 1.2E-14 92.7 9.7 65 104-204 131-195 (342)
203 PRK15115 response regulator Gl 99.1 2.4E-10 5.3E-15 98.9 7.7 118 40-191 157-289 (444)
204 PRK11361 acetoacetate metaboli 99.1 3.2E-10 7E-15 98.5 8.1 108 40-172 166-287 (457)
205 PRK06871 DNA polymerase III su 99.1 8.5E-10 1.8E-14 91.0 9.9 127 42-204 26-170 (325)
206 PRK12377 putative replication 99.1 2.2E-10 4.7E-15 91.2 5.9 116 41-192 102-223 (248)
207 PRK12422 chromosomal replicati 99.1 3E-10 6.6E-15 97.8 7.1 128 41-204 142-275 (445)
208 PRK04132 replication factor C 99.1 4.3E-10 9.2E-15 102.6 8.3 126 35-204 559-693 (846)
209 PRK08769 DNA polymerase III su 99.1 1.3E-09 2.9E-14 89.7 10.2 127 42-204 28-176 (319)
210 PRK14086 dnaA chromosomal repl 99.0 1.7E-10 3.8E-15 101.4 4.9 128 42-204 316-450 (617)
211 KOG0480|consensus 99.0 6.4E-11 1.4E-15 102.5 1.7 181 4-204 344-533 (764)
212 PRK07993 DNA polymerase III su 99.0 1.3E-09 2.9E-14 90.5 9.3 126 42-204 26-171 (334)
213 COG3284 AcoR Transcriptional a 99.0 1.6E-10 3.4E-15 100.4 3.2 131 39-197 335-473 (606)
214 KOG0478|consensus 99.0 1.3E-10 2.8E-15 101.3 2.7 178 4-203 428-616 (804)
215 PRK14088 dnaA chromosomal repl 99.0 6E-10 1.3E-14 96.0 6.6 130 41-204 131-267 (440)
216 PRK08699 DNA polymerase III su 99.0 3.1E-09 6.7E-14 88.0 10.2 126 42-204 23-176 (325)
217 PF01695 IstB_IS21: IstB-like 99.0 3.4E-10 7.4E-15 85.9 4.0 116 40-191 47-171 (178)
218 PRK09183 transposase/IS protei 99.0 7.4E-10 1.6E-14 89.1 5.9 130 40-201 102-241 (259)
219 PRK06090 DNA polymerase III su 99.0 3.8E-09 8.2E-14 87.0 9.4 127 42-204 27-171 (319)
220 TIGR01818 ntrC nitrogen regula 99.0 1.9E-09 4.1E-14 93.8 7.5 115 40-172 157-278 (463)
221 PRK05642 DNA replication initi 98.9 3.3E-09 7.2E-14 84.1 8.1 120 41-204 46-170 (234)
222 KOG0482|consensus 98.9 2.2E-10 4.8E-15 97.0 1.4 178 5-204 342-530 (721)
223 PF00910 RNA_helicase: RNA hel 98.9 7.7E-09 1.7E-13 72.0 8.8 105 43-172 1-107 (107)
224 PRK08116 hypothetical protein; 98.9 3.7E-09 8.1E-14 85.4 8.0 124 41-202 115-251 (268)
225 KOG2035|consensus 98.9 7.5E-09 1.6E-13 81.9 8.6 125 41-204 35-190 (351)
226 PRK10365 transcriptional regul 98.9 5.4E-09 1.2E-13 90.4 8.3 87 39-146 161-261 (441)
227 PRK14087 dnaA chromosomal repl 98.9 4.2E-09 9.1E-14 91.0 7.3 128 41-204 142-279 (450)
228 PF13401 AAA_22: AAA domain; P 98.9 9.8E-09 2.1E-13 73.8 7.9 88 40-143 4-113 (131)
229 COG1116 TauB ABC-type nitrate/ 98.9 6.8E-08 1.5E-12 75.7 12.6 45 20-64 8-53 (248)
230 PRK06620 hypothetical protein; 98.9 9.3E-09 2E-13 80.4 7.7 26 41-66 45-70 (214)
231 PF00308 Bac_DnaA: Bacterial d 98.9 3.1E-09 6.8E-14 83.4 5.0 125 42-204 36-170 (219)
232 KOG0477|consensus 98.8 5.4E-10 1.2E-14 96.6 0.4 169 5-194 449-626 (854)
233 PRK07952 DNA replication prote 98.8 5.6E-09 1.2E-13 82.9 5.9 116 41-191 100-221 (244)
234 PF06309 Torsin: Torsin; Inte 98.8 4.3E-09 9.2E-14 74.2 4.6 54 3-64 23-77 (127)
235 COG0444 DppD ABC-type dipeptid 98.8 1.6E-08 3.4E-13 82.0 8.2 155 27-189 17-190 (316)
236 KOG0990|consensus 98.8 2.3E-09 5E-14 86.3 3.0 114 41-194 63-185 (360)
237 COG0464 SpoVK ATPases of the A 98.8 2.1E-08 4.5E-13 88.1 9.0 137 38-204 16-154 (494)
238 COG1125 OpuBA ABC-type proline 98.8 9.7E-08 2.1E-12 75.0 11.4 58 19-76 5-65 (309)
239 COG1484 DnaC DNA replication p 98.8 1.8E-08 3.9E-13 80.7 7.7 117 40-192 105-231 (254)
240 KOG0741|consensus 98.8 3.6E-08 7.9E-13 84.3 9.6 136 40-202 538-674 (744)
241 KOG1942|consensus 98.8 1.3E-08 2.9E-13 81.2 6.4 61 5-74 38-100 (456)
242 PRK06835 DNA replication prote 98.8 2.4E-08 5.2E-13 82.8 7.6 117 41-193 184-307 (329)
243 KOG0481|consensus 98.7 3.9E-09 8.4E-14 89.7 2.1 170 4-194 330-508 (729)
244 COG4650 RtcR Sigma54-dependent 98.7 1.3E-08 2.9E-13 81.4 5.0 87 40-144 208-308 (531)
245 TIGR00602 rad24 checkpoint pro 98.7 2E-08 4.4E-13 89.5 6.5 56 5-70 84-140 (637)
246 COG1117 PstB ABC-type phosphat 98.7 8.5E-08 1.8E-12 73.4 8.5 45 20-64 12-57 (253)
247 PRK05917 DNA polymerase III su 98.7 6.2E-08 1.3E-12 78.5 8.3 122 42-200 21-154 (290)
248 PF13173 AAA_14: AAA domain 98.7 7.6E-08 1.6E-12 69.1 8.0 70 41-118 3-74 (128)
249 COG1126 GlnQ ABC-type polar am 98.7 4.2E-08 9.1E-13 75.2 6.6 46 19-64 6-52 (240)
250 TIGR03015 pepcterm_ATPase puta 98.7 1.9E-07 4.1E-12 75.5 9.8 25 41-65 44-68 (269)
251 PRK06921 hypothetical protein; 98.7 1.3E-07 2.9E-12 76.3 8.6 36 40-75 117-156 (266)
252 PRK09087 hypothetical protein; 98.6 7.1E-08 1.5E-12 76.1 6.6 111 41-204 45-157 (226)
253 COG1124 DppF ABC-type dipeptid 98.6 2.7E-07 5.9E-12 72.0 9.3 35 30-64 22-57 (252)
254 PRK08939 primosomal protein Dn 98.6 1.5E-07 3.3E-12 77.4 7.7 69 40-118 156-230 (306)
255 COG4608 AppF ABC-type oligopep 98.6 5.2E-07 1.1E-11 71.7 9.8 103 28-144 26-154 (268)
256 PF12774 AAA_6: Hydrolytic ATP 98.6 9.7E-08 2.1E-12 75.3 5.7 66 42-120 34-99 (231)
257 PF05621 TniB: Bacterial TniB 98.6 1.8E-07 3.8E-12 75.7 7.0 105 4-120 33-160 (302)
258 KOG0479|consensus 98.6 9.7E-08 2.1E-12 82.5 5.6 167 3-194 299-478 (818)
259 PRK05818 DNA polymerase III su 98.5 8.2E-07 1.8E-11 70.7 9.5 123 41-200 8-147 (261)
260 PF12775 AAA_7: P-loop contain 98.5 2.1E-07 4.6E-12 75.3 6.1 142 40-204 33-184 (272)
261 KOG3347|consensus 98.5 6E-07 1.3E-11 64.8 7.4 34 39-72 6-39 (176)
262 COG5271 MDN1 AAA ATPase contai 98.5 7.3E-07 1.6E-11 85.1 9.9 144 39-202 887-1036(4600)
263 PRK15455 PrkA family serine pr 98.5 2.7E-07 5.8E-12 80.7 6.6 61 5-73 76-137 (644)
264 COG4619 ABC-type uncharacteriz 98.5 4E-06 8.6E-11 62.1 11.4 37 28-64 16-53 (223)
265 PRK07276 DNA polymerase III su 98.5 5.9E-07 1.3E-11 73.0 7.9 140 9-199 6-162 (290)
266 PHA02624 large T antigen; Prov 98.5 4E-07 8.7E-12 79.9 7.2 130 40-201 431-563 (647)
267 PF03215 Rad17: Rad17 cell cyc 98.5 4.2E-07 9E-12 79.7 7.0 31 42-72 47-77 (519)
268 COG1123 ATPase components of v 98.5 5.3E-07 1.1E-11 78.4 7.4 125 28-161 22-155 (539)
269 COG5271 MDN1 AAA ATPase contai 98.5 4.4E-07 9.5E-12 86.5 7.2 138 41-194 1544-1685(4600)
270 PF13207 AAA_17: AAA domain; P 98.4 2.1E-07 4.5E-12 65.9 4.1 31 43-73 2-32 (121)
271 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.4 3.2E-06 7E-11 61.9 10.2 40 25-64 10-50 (144)
272 cd01120 RecA-like_NTPases RecA 98.4 3.3E-06 7.1E-11 62.5 9.7 32 43-74 2-36 (165)
273 PRK07132 DNA polymerase III su 98.4 2.7E-06 5.9E-11 69.7 9.8 125 42-204 20-153 (299)
274 PF03266 NTPase_1: NTPase; In 98.4 1.1E-06 2.5E-11 66.0 7.0 23 42-64 1-23 (168)
275 COG3842 PotA ABC-type spermidi 98.4 5.2E-07 1.1E-11 74.9 5.3 46 19-64 9-55 (352)
276 COG0593 DnaA ATPase involved i 98.4 1.5E-06 3.3E-11 73.4 8.2 128 40-204 113-248 (408)
277 PF03969 AFG1_ATPase: AFG1-lik 98.4 5.3E-07 1.2E-11 75.7 5.4 29 38-66 60-88 (362)
278 KOG0058|consensus 98.4 1.2E-06 2.6E-11 77.8 7.6 46 19-64 469-518 (716)
279 PRK07261 topology modulation p 98.4 2E-06 4.2E-11 65.0 7.6 43 42-85 2-44 (171)
280 PHA00729 NTP-binding motif con 98.4 9.9E-07 2.1E-11 68.9 6.0 24 42-65 19-42 (226)
281 PRK08118 topology modulation p 98.4 4.6E-07 1E-11 68.1 4.1 33 42-74 3-35 (167)
282 COG1118 CysA ABC-type sulfate/ 98.3 4.3E-06 9.2E-11 67.5 9.3 43 22-64 9-52 (345)
283 COG1120 FepC ABC-type cobalami 98.3 1.9E-06 4.2E-11 68.6 6.4 47 19-65 6-53 (258)
284 cd03216 ABC_Carb_Monos_I This 98.3 1.1E-05 2.4E-10 60.4 10.2 44 21-64 6-50 (163)
285 COG1123 ATPase components of v 98.3 4E-06 8.7E-11 73.0 8.8 144 28-189 304-466 (539)
286 KOG2680|consensus 98.3 1.3E-06 2.8E-11 70.2 5.1 38 39-76 65-104 (454)
287 TIGR02688 conserved hypothetic 98.3 4.3E-06 9.3E-11 70.8 8.2 86 39-148 208-294 (449)
288 PRK00131 aroK shikimate kinase 98.2 1.4E-06 3.1E-11 65.5 4.4 33 40-72 4-36 (175)
289 PF05729 NACHT: NACHT domain 98.2 1.8E-05 3.9E-10 58.7 10.3 23 42-64 2-24 (166)
290 COG3839 MalK ABC-type sugar tr 98.2 1.9E-06 4.1E-11 71.2 5.2 45 20-64 8-53 (338)
291 KOG1514|consensus 98.2 6.2E-06 1.3E-10 73.0 8.1 130 42-204 424-580 (767)
292 KOG0056|consensus 98.2 3.7E-05 7.9E-10 66.0 12.2 58 19-76 541-602 (790)
293 PF13604 AAA_30: AAA domain; P 98.2 1.8E-05 3.8E-10 61.1 9.5 32 42-73 20-54 (196)
294 PRK13947 shikimate kinase; Pro 98.2 2.2E-06 4.8E-11 64.5 4.3 32 42-73 3-34 (171)
295 PRK03839 putative kinase; Prov 98.2 2E-06 4.3E-11 65.4 4.1 31 42-72 2-32 (180)
296 COG2274 SunT ABC-type bacterio 98.2 1.2E-05 2.5E-10 73.2 9.6 46 19-64 475-523 (709)
297 cd03222 ABC_RNaseL_inhibitor T 98.2 1.8E-05 3.9E-10 60.0 9.2 41 23-64 8-49 (177)
298 PRK00625 shikimate kinase; Pro 98.2 2.3E-06 5E-11 64.6 4.3 32 42-73 2-33 (173)
299 PHA02774 E1; Provisional 98.2 1.7E-05 3.7E-10 69.6 9.9 77 40-149 434-511 (613)
300 COG4172 ABC-type uncharacteriz 98.2 7.2E-06 1.6E-10 68.6 7.2 134 21-161 16-158 (534)
301 PRK10536 hypothetical protein; 98.1 3.4E-05 7.4E-10 61.4 10.6 23 41-63 75-97 (262)
302 KOG1970|consensus 98.1 1.6E-05 3.5E-10 68.7 9.0 32 41-72 111-142 (634)
303 cd00464 SK Shikimate kinase (S 98.1 3.2E-06 7E-11 62.3 4.4 31 42-72 1-31 (154)
304 KOG0055|consensus 98.1 3.8E-05 8.3E-10 72.4 12.2 59 19-77 991-1055(1228)
305 cd01128 rho_factor Transcripti 98.1 7.4E-06 1.6E-10 65.4 6.6 26 41-66 17-42 (249)
306 PRK06217 hypothetical protein; 98.1 3.2E-06 7E-11 64.5 4.3 32 42-73 3-34 (183)
307 COG0703 AroK Shikimate kinase 98.1 2.7E-06 5.9E-11 63.4 3.7 33 41-73 3-35 (172)
308 PRK13949 shikimate kinase; Pro 98.1 3.2E-06 6.9E-11 63.7 4.1 31 42-72 3-33 (169)
309 PRK14722 flhF flagellar biosyn 98.1 3.4E-05 7.5E-10 64.9 10.3 35 41-75 138-177 (374)
310 COG4172 ABC-type uncharacteriz 98.1 2.2E-05 4.8E-10 65.8 9.0 119 26-161 298-427 (534)
311 cd00267 ABC_ATPase ABC (ATP-bi 98.1 3.3E-05 7.2E-10 57.3 9.2 41 25-65 9-50 (157)
312 COG1102 Cmk Cytidylate kinase 98.1 3.5E-06 7.5E-11 61.8 3.6 28 43-70 3-30 (179)
313 PRK14532 adenylate kinase; Pro 98.1 3.9E-06 8.5E-11 64.2 4.1 29 42-70 2-30 (188)
314 cd02027 APSK Adenosine 5'-phos 98.1 1.8E-05 4E-10 58.3 7.5 34 43-76 2-38 (149)
315 COG1134 TagH ABC-type polysacc 98.1 3.5E-05 7.6E-10 60.4 9.0 41 25-65 37-78 (249)
316 PF13191 AAA_16: AAA ATPase do 98.1 2.6E-06 5.6E-11 64.6 2.8 59 7-76 2-63 (185)
317 PF13671 AAA_33: AAA domain; P 98.1 3E-06 6.5E-11 61.7 2.9 32 43-76 2-33 (143)
318 PRK14531 adenylate kinase; Pro 98.0 5.7E-06 1.2E-10 63.1 4.4 29 42-70 4-32 (183)
319 cd01124 KaiC KaiC is a circadi 98.0 3.2E-05 7E-10 58.8 8.6 32 43-74 2-36 (187)
320 PRK13948 shikimate kinase; Pro 98.0 6.3E-06 1.4E-10 62.8 4.5 35 38-72 8-42 (182)
321 PRK14974 cell division protein 98.0 9.1E-05 2E-09 61.7 11.7 33 42-74 142-177 (336)
322 TIGR01359 UMP_CMP_kin_fam UMP- 98.0 5.5E-06 1.2E-10 63.0 4.2 31 43-75 2-32 (183)
323 PRK14530 adenylate kinase; Pro 98.0 5.8E-06 1.3E-10 64.7 4.4 30 41-70 4-33 (215)
324 KOG2227|consensus 98.0 8.2E-06 1.8E-10 69.3 5.2 161 6-212 151-339 (529)
325 cd00227 CPT Chloramphenicol (C 98.0 5.3E-06 1.2E-10 62.8 3.8 33 42-74 4-36 (175)
326 PRK09376 rho transcription ter 98.0 2.1E-05 4.5E-10 66.2 7.6 25 41-65 170-194 (416)
327 COG1127 Ttg2A ABC-type transpo 98.0 8.5E-06 1.8E-10 63.6 4.8 45 20-64 13-58 (263)
328 cd02020 CMPK Cytidine monophos 98.0 6.9E-06 1.5E-10 60.0 4.1 30 43-72 2-31 (147)
329 PRK05057 aroK shikimate kinase 98.0 7.9E-06 1.7E-10 61.7 4.4 33 41-73 5-37 (172)
330 PRK04296 thymidine kinase; Pro 98.0 3.9E-05 8.5E-10 58.9 8.3 31 43-73 5-38 (190)
331 COG2884 FtsE Predicted ATPase 98.0 1.2E-05 2.6E-10 60.7 5.1 50 28-77 15-67 (223)
332 PF00448 SRP54: SRP54-type pro 98.0 0.00011 2.3E-09 56.7 10.4 35 42-76 3-40 (196)
333 cd01428 ADK Adenylate kinase ( 98.0 7.9E-06 1.7E-10 62.7 4.1 29 42-70 1-29 (194)
334 PRK06762 hypothetical protein; 98.0 7.5E-06 1.6E-10 61.3 3.9 36 42-77 4-39 (166)
335 KOG1808|consensus 98.0 1.3E-05 2.8E-10 78.2 6.1 138 41-194 441-581 (1856)
336 TIGR01313 therm_gnt_kin carboh 98.0 7E-06 1.5E-10 61.3 3.6 32 43-76 1-32 (163)
337 PF01583 APS_kinase: Adenylyls 98.0 2.2E-05 4.7E-10 58.0 6.0 37 42-78 4-43 (156)
338 cd02021 GntK Gluconate kinase 98.0 8.9E-06 1.9E-10 59.8 3.9 32 43-76 2-33 (150)
339 COG0563 Adk Adenylate kinase a 97.9 8.9E-06 1.9E-10 61.7 3.8 31 42-74 2-32 (178)
340 PRK08533 flagellar accessory p 97.9 0.00012 2.6E-09 57.9 10.4 33 41-73 25-60 (230)
341 COG0529 CysC Adenylylsulfate k 97.9 3.3E-05 7.2E-10 57.6 6.6 53 42-94 25-85 (197)
342 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.9 1.3E-05 2.8E-10 62.8 4.8 37 28-64 17-54 (218)
343 PRK03731 aroL shikimate kinase 97.9 1.3E-05 2.9E-10 60.2 4.5 31 42-72 4-34 (171)
344 PRK13946 shikimate kinase; Pro 97.9 1.2E-05 2.6E-10 61.4 4.1 34 40-73 10-43 (184)
345 PRK06547 hypothetical protein; 97.9 1.2E-05 2.6E-10 60.7 4.0 31 42-72 17-47 (172)
346 cd03260 ABC_PstB_phosphate_tra 97.9 1.9E-05 4.2E-10 62.2 5.3 44 21-64 6-50 (227)
347 COG3854 SpoIIIAA ncharacterize 97.9 8.4E-05 1.8E-09 57.9 8.5 24 41-64 138-161 (308)
348 cd03261 ABC_Org_Solvent_Resist 97.9 2E-05 4.4E-10 62.4 5.4 44 21-64 6-50 (235)
349 PF13245 AAA_19: Part of AAA d 97.9 2.6E-05 5.7E-10 50.5 4.9 23 42-64 12-35 (76)
350 TIGR01360 aden_kin_iso1 adenyl 97.9 1.4E-05 3E-10 60.9 4.2 29 42-70 5-33 (188)
351 TIGR01618 phage_P_loop phage n 97.9 2.2E-05 4.7E-10 61.5 5.3 21 41-61 13-33 (220)
352 cd03282 ABC_MSH4_euk MutS4 hom 97.9 0.00013 2.9E-09 56.6 9.7 32 31-62 19-51 (204)
353 PRK05800 cobU adenosylcobinami 97.9 0.00016 3.6E-09 54.4 9.9 33 42-74 3-35 (170)
354 PTZ00088 adenylate kinase 1; P 97.9 1.4E-05 3.1E-10 63.0 4.3 30 42-71 8-37 (229)
355 COG3638 ABC-type phosphate/pho 97.9 3.1E-05 6.6E-10 60.4 5.9 45 21-65 9-55 (258)
356 TIGR03608 L_ocin_972_ABC putat 97.9 1.8E-05 3.8E-10 61.4 4.7 43 22-64 5-48 (206)
357 KOG0055|consensus 97.9 0.00017 3.7E-09 68.2 11.8 57 20-76 355-417 (1228)
358 PRK02496 adk adenylate kinase; 97.9 1.4E-05 3.1E-10 60.9 4.1 30 42-71 3-32 (184)
359 PRK00771 signal recognition pa 97.9 0.00012 2.5E-09 63.2 10.0 37 40-76 95-134 (437)
360 PRK14528 adenylate kinase; Pro 97.9 1.6E-05 3.4E-10 60.8 4.3 30 42-71 3-32 (186)
361 cd03225 ABC_cobalt_CbiO_domain 97.9 2.3E-05 5E-10 61.0 5.2 37 28-64 14-51 (211)
362 cd03269 ABC_putative_ATPase Th 97.9 2.6E-05 5.7E-10 60.7 5.5 44 21-64 6-50 (210)
363 cd03224 ABC_TM1139_LivF_branch 97.9 2.5E-05 5.4E-10 61.3 5.2 44 21-64 6-50 (222)
364 cd03256 ABC_PhnC_transporter A 97.9 2.7E-05 5.9E-10 61.9 5.4 44 21-64 6-51 (241)
365 COG1132 MdlB ABC-type multidru 97.9 0.00013 2.9E-09 65.3 10.4 49 18-66 331-381 (567)
366 cd03293 ABC_NrtD_SsuB_transpor 97.9 3.2E-05 6.9E-10 60.7 5.7 37 28-64 17-54 (220)
367 cd03296 ABC_CysA_sulfate_impor 97.9 2.8E-05 6.1E-10 61.8 5.4 45 20-64 7-52 (239)
368 TIGR02315 ABC_phnC phosphonate 97.9 2.3E-05 5E-10 62.4 4.9 44 21-64 7-52 (243)
369 TIGR03574 selen_PSTK L-seryl-t 97.9 0.00018 4E-09 57.6 10.1 34 43-76 2-38 (249)
370 cd03262 ABC_HisP_GlnQ_permease 97.9 3.1E-05 6.8E-10 60.4 5.5 44 21-64 6-50 (213)
371 cd03218 ABC_YhbG The ABC trans 97.8 3.1E-05 6.7E-10 61.2 5.5 45 20-64 5-50 (232)
372 TIGR00767 rho transcription te 97.8 5.5E-05 1.2E-09 63.9 7.2 32 34-65 161-193 (415)
373 TIGR01978 sufC FeS assembly AT 97.8 3E-05 6.4E-10 61.8 5.5 44 20-63 5-49 (243)
374 COG1936 Predicted nucleotide k 97.8 1.6E-05 3.5E-10 59.0 3.5 30 42-72 2-31 (180)
375 COG1135 AbcC ABC-type metal io 97.8 0.00016 3.4E-09 58.7 9.4 36 28-63 19-55 (339)
376 cd03229 ABC_Class3 This class 97.8 3.4E-05 7.4E-10 58.5 5.5 44 21-64 6-50 (178)
377 TIGR03410 urea_trans_UrtE urea 97.8 3.1E-05 6.7E-10 61.2 5.4 44 21-64 6-50 (230)
378 COG4555 NatA ABC-type Na+ tran 97.8 0.00033 7.2E-09 53.6 10.5 35 30-64 17-52 (245)
379 PRK10247 putative ABC transpor 97.8 2.8E-05 6E-10 61.3 5.0 45 20-64 12-57 (225)
380 cd03301 ABC_MalK_N The N-termi 97.8 3.2E-05 7E-10 60.3 5.3 44 21-64 6-50 (213)
381 cd03283 ABC_MutS-like MutS-lik 97.8 0.00021 4.6E-09 55.2 9.8 22 42-63 27-48 (199)
382 PRK14247 phosphate ABC transpo 97.8 2.9E-05 6.2E-10 62.2 5.1 44 21-64 9-53 (250)
383 TIGR01351 adk adenylate kinase 97.8 2E-05 4.3E-10 61.5 4.1 28 43-70 2-29 (210)
384 cd02019 NK Nucleoside/nucleoti 97.8 3.6E-05 7.9E-10 48.9 4.6 31 43-73 2-33 (69)
385 KOG1051|consensus 97.8 9.4E-05 2E-09 68.1 8.9 130 41-199 209-351 (898)
386 PRK11248 tauB taurine transpor 97.8 3.2E-05 7E-10 62.2 5.4 44 21-64 7-51 (255)
387 cd03280 ABC_MutS2 MutS2 homolo 97.8 0.00011 2.3E-09 56.9 8.1 28 34-61 20-49 (200)
388 COG0572 Udk Uridine kinase [Nu 97.8 9.7E-05 2.1E-09 57.3 7.7 127 45-203 13-140 (218)
389 cd00820 PEPCK_HprK Phosphoenol 97.8 2.5E-05 5.4E-10 53.9 4.0 31 31-61 5-36 (107)
390 cd03264 ABC_drug_resistance_li 97.8 3.8E-05 8.1E-10 59.9 5.5 44 21-64 6-49 (211)
391 PRK12723 flagellar biosynthesi 97.8 0.00033 7.2E-09 59.5 11.6 35 41-75 175-216 (388)
392 PRK14267 phosphate ABC transpo 97.8 2.9E-05 6.3E-10 62.3 5.0 45 20-64 9-54 (253)
393 cd03258 ABC_MetN_methionine_tr 97.8 2.3E-05 5E-10 62.0 4.4 36 29-64 19-55 (233)
394 PRK11432 fbpC ferric transport 97.8 3.3E-05 7.2E-10 64.9 5.5 45 20-64 11-56 (351)
395 cd03263 ABC_subfamily_A The AB 97.8 3.4E-05 7.3E-10 60.5 5.2 44 21-64 6-52 (220)
396 cd01121 Sms Sms (bacterial rad 97.8 0.00018 3.9E-09 60.9 9.9 75 42-120 84-173 (372)
397 PRK13540 cytochrome c biogenes 97.8 3.9E-05 8.4E-10 59.3 5.5 44 21-64 7-51 (200)
398 PRK14256 phosphate ABC transpo 97.8 3.6E-05 7.8E-10 61.7 5.4 44 21-64 10-54 (252)
399 PF13238 AAA_18: AAA domain; P 97.8 1.9E-05 4.1E-10 56.2 3.4 22 43-64 1-22 (129)
400 cd03235 ABC_Metallic_Cations A 97.8 2.7E-05 5.8E-10 60.8 4.6 42 23-64 7-49 (213)
401 TIGR02673 FtsE cell division A 97.8 2.6E-05 5.7E-10 60.9 4.5 37 28-64 15-52 (214)
402 cd03219 ABC_Mj1267_LivG_branch 97.8 3.3E-05 7.2E-10 61.2 5.1 44 21-64 6-50 (236)
403 TIGR03265 PhnT2 putative 2-ami 97.8 3.5E-05 7.5E-10 64.9 5.5 45 20-64 9-54 (353)
404 PF05272 VirE: Virulence-assoc 97.8 5.2E-05 1.1E-09 58.5 6.0 95 43-172 55-149 (198)
405 cd03259 ABC_Carb_Solutes_like 97.8 3.7E-05 8.1E-10 60.0 5.3 44 21-64 6-50 (213)
406 PRK11022 dppD dipeptide transp 97.8 2.8E-05 6E-10 64.8 4.8 38 28-65 20-58 (326)
407 cd01131 PilT Pilus retraction 97.8 4.9E-05 1.1E-09 58.7 5.9 25 41-65 2-26 (198)
408 PRK13539 cytochrome c biogenes 97.8 4.3E-05 9.3E-10 59.4 5.6 44 21-64 8-52 (207)
409 cd03265 ABC_DrrA DrrA is the A 97.8 4.1E-05 8.9E-10 60.1 5.5 44 21-64 6-50 (220)
410 cd03226 ABC_cobalt_CbiO_domain 97.8 2.9E-05 6.2E-10 60.3 4.6 37 28-64 13-50 (205)
411 PRK14274 phosphate ABC transpo 97.8 4.1E-05 8.8E-10 61.7 5.6 45 20-64 17-62 (259)
412 PRK10744 pstB phosphate transp 97.8 3.6E-05 7.8E-10 62.0 5.2 45 20-64 18-63 (260)
413 PRK00279 adk adenylate kinase; 97.8 2.6E-05 5.7E-10 61.0 4.3 29 42-70 2-30 (215)
414 PRK13538 cytochrome c biogenes 97.8 3.6E-05 7.7E-10 59.7 5.0 44 21-64 7-51 (204)
415 PRK11264 putative amino-acid A 97.8 3.1E-05 6.6E-10 62.0 4.8 44 21-64 9-53 (250)
416 COG4088 Predicted nucleotide k 97.8 0.00015 3.2E-09 55.6 8.1 25 42-66 3-27 (261)
417 TIGR03005 ectoine_ehuA ectoine 97.8 3.8E-05 8.2E-10 61.6 5.3 44 21-64 6-50 (252)
418 PRK06696 uridine kinase; Valid 97.8 2.4E-05 5.2E-10 61.6 4.0 35 42-76 24-61 (223)
419 TIGR03864 PQQ_ABC_ATP ABC tran 97.8 4.1E-05 8.9E-10 60.7 5.4 44 21-64 7-51 (236)
420 cd03268 ABC_BcrA_bacitracin_re 97.8 4.5E-05 9.7E-10 59.3 5.4 44 21-64 6-50 (208)
421 cd03292 ABC_FtsE_transporter F 97.8 3.3E-05 7.1E-10 60.3 4.7 44 21-64 6-51 (214)
422 cd03230 ABC_DR_subfamily_A Thi 97.8 4.9E-05 1.1E-09 57.4 5.5 41 24-64 9-50 (173)
423 PRK11247 ssuB aliphatic sulfon 97.8 3.1E-05 6.7E-10 62.4 4.6 46 19-64 16-62 (257)
424 PRK14235 phosphate transporter 97.8 4.6E-05 9.9E-10 61.7 5.6 46 20-65 24-70 (267)
425 TIGR00150 HI0065_YjeE ATPase, 97.8 3E-05 6.5E-10 55.8 3.9 27 41-67 23-49 (133)
426 PRK11124 artP arginine transpo 97.8 4.4E-05 9.6E-10 60.8 5.3 44 21-64 8-52 (242)
427 PRK11650 ugpC glycerol-3-phosp 97.8 4E-05 8.7E-10 64.6 5.3 45 20-64 8-54 (356)
428 COG4178 ABC-type uncharacteriz 97.8 0.00017 3.7E-09 63.8 9.4 35 30-64 408-443 (604)
429 PF06745 KaiC: KaiC; InterPro 97.8 0.00053 1.2E-08 54.0 11.4 36 39-74 18-57 (226)
430 PRK13547 hmuV hemin importer A 97.8 4.6E-05 9.9E-10 61.9 5.5 44 21-64 7-51 (272)
431 COG3840 ThiQ ABC-type thiamine 97.8 0.00011 2.4E-09 55.3 6.9 42 21-64 7-49 (231)
432 TIGR00972 3a0107s01c2 phosphat 97.8 4E-05 8.6E-10 61.3 5.0 44 21-64 7-51 (247)
433 PRK14250 phosphate ABC transpo 97.8 4.7E-05 1E-09 60.7 5.4 44 21-64 9-53 (241)
434 PRK08154 anaerobic benzoate ca 97.8 2.2E-05 4.7E-10 64.9 3.5 34 39-72 132-165 (309)
435 PRK09452 potA putrescine/sperm 97.8 4.6E-05 1E-09 64.6 5.6 45 20-64 19-64 (375)
436 PTZ00301 uridine kinase; Provi 97.8 5.9E-05 1.3E-09 58.8 5.7 22 43-64 6-27 (210)
437 COG1136 SalX ABC-type antimicr 97.8 4.1E-05 8.9E-10 59.9 4.8 37 28-64 18-55 (226)
438 PRK14242 phosphate transporter 97.8 5E-05 1.1E-09 60.9 5.5 44 21-64 12-56 (253)
439 PRK09493 glnQ glutamine ABC tr 97.8 4.9E-05 1.1E-09 60.5 5.4 44 21-64 7-51 (240)
440 PRK10078 ribose 1,5-bisphospho 97.8 2.6E-05 5.5E-10 59.7 3.6 29 42-70 4-32 (186)
441 TIGR00960 3a0501s02 Type II (G 97.8 5.1E-05 1.1E-09 59.4 5.4 36 29-64 17-53 (216)
442 PRK14273 phosphate ABC transpo 97.8 4.1E-05 8.9E-10 61.4 4.9 46 20-65 12-58 (254)
443 PLN02200 adenylate kinase fami 97.8 3.2E-05 6.9E-10 61.3 4.1 33 42-76 45-77 (234)
444 PRK13548 hmuV hemin importer A 97.7 5.2E-05 1.1E-09 61.0 5.4 44 21-64 8-52 (258)
445 cd03232 ABC_PDR_domain2 The pl 97.7 5.7E-05 1.2E-09 58.0 5.4 36 28-63 20-56 (192)
446 cd03295 ABC_OpuCA_Osmoprotecti 97.7 5.1E-05 1.1E-09 60.5 5.3 44 21-64 6-51 (242)
447 PF05707 Zot: Zonular occluden 97.7 0.00013 2.8E-09 56.1 7.3 65 105-197 79-143 (193)
448 PF08433 KTI12: Chromatin asso 97.7 0.00011 2.5E-09 59.4 7.3 78 42-120 3-85 (270)
449 COG1121 ZnuC ABC-type Mn/Zn tr 97.7 4.4E-05 9.6E-10 60.7 4.7 46 19-64 8-54 (254)
450 TIGR02237 recomb_radB DNA repa 97.7 5.7E-05 1.2E-09 58.7 5.4 37 39-75 10-50 (209)
451 cd03238 ABC_UvrA The excision 97.7 4.2E-05 9.1E-10 58.0 4.5 34 29-62 9-43 (176)
452 cd03266 ABC_NatA_sodium_export 97.7 5.2E-05 1.1E-09 59.3 5.2 36 29-64 19-55 (218)
453 TIGR02858 spore_III_AA stage I 97.7 0.00025 5.3E-09 57.4 9.1 25 41-65 112-136 (270)
454 TIGR03258 PhnT 2-aminoethylpho 97.7 5.2E-05 1.1E-09 64.0 5.5 45 20-64 10-55 (362)
455 PRK10851 sulfate/thiosulfate t 97.7 5.4E-05 1.2E-09 63.7 5.5 45 20-64 7-52 (353)
456 PRK14241 phosphate transporter 97.7 5E-05 1.1E-09 61.1 5.1 45 20-64 9-54 (258)
457 PRK15093 antimicrobial peptide 97.7 4.5E-05 9.8E-10 63.6 5.0 37 28-64 20-57 (330)
458 COG4525 TauB ABC-type taurine 97.7 3E-05 6.5E-10 58.9 3.5 44 21-64 9-55 (259)
459 cd03214 ABC_Iron-Siderophores_ 97.7 6.3E-05 1.4E-09 57.2 5.4 43 22-64 6-49 (180)
460 PRK04040 adenylate kinase; Pro 97.7 3.5E-05 7.7E-10 59.0 4.1 24 42-65 4-27 (188)
461 PRK11000 maltose/maltodextrin 97.7 5.5E-05 1.2E-09 64.1 5.6 45 20-64 8-53 (369)
462 PRK04182 cytidylate kinase; Pr 97.7 3.5E-05 7.6E-10 58.2 4.0 29 42-70 2-30 (180)
463 TIGR02323 CP_lyasePhnK phospho 97.7 5.5E-05 1.2E-09 60.6 5.3 44 21-64 9-53 (253)
464 TIGR01189 ccmA heme ABC export 97.7 6.5E-05 1.4E-09 58.0 5.5 43 22-64 7-50 (198)
465 PRK09984 phosphonate/organopho 97.7 4.8E-05 1E-09 61.4 5.0 44 21-64 10-54 (262)
466 PRK10895 lipopolysaccharide AB 97.7 5.3E-05 1.1E-09 60.3 5.1 44 21-64 9-53 (241)
467 PRK14237 phosphate transporter 97.7 5.4E-05 1.2E-09 61.3 5.2 45 20-64 25-70 (267)
468 PRK10575 iron-hydroxamate tran 97.7 5.3E-05 1.1E-09 61.2 5.1 45 20-64 16-61 (265)
469 PRK11607 potG putrescine trans 97.7 5.6E-05 1.2E-09 64.1 5.5 45 20-64 24-69 (377)
470 PRK14259 phosphate ABC transpo 97.7 6.3E-05 1.4E-09 61.0 5.5 45 20-64 18-63 (269)
471 cd03257 ABC_NikE_OppD_transpor 97.7 5.5E-05 1.2E-09 59.6 5.1 36 29-64 19-55 (228)
472 PRK14248 phosphate ABC transpo 97.7 5.9E-05 1.3E-09 61.0 5.4 45 20-64 26-71 (268)
473 PRK11629 lolD lipoprotein tran 97.7 6.2E-05 1.3E-09 59.6 5.4 37 28-64 22-59 (233)
474 PRK14240 phosphate transporter 97.7 5.7E-05 1.2E-09 60.4 5.2 45 20-64 8-53 (250)
475 TIGR03796 NHPM_micro_ABC1 NHPM 97.7 0.00034 7.4E-09 64.4 10.9 46 19-64 481-529 (710)
476 PRK14251 phosphate ABC transpo 97.7 5.7E-05 1.2E-09 60.5 5.2 45 20-64 9-54 (251)
477 cd01130 VirB11-like_ATPase Typ 97.7 0.00015 3.3E-09 55.4 7.3 26 40-65 25-50 (186)
478 cd03228 ABCC_MRP_Like The MRP 97.7 4.8E-05 1E-09 57.3 4.5 36 29-64 16-52 (171)
479 TIGR02211 LolD_lipo_ex lipopro 97.7 6.4E-05 1.4E-09 59.0 5.4 37 28-64 18-55 (221)
480 PRK14244 phosphate ABC transpo 97.7 6.3E-05 1.4E-09 60.2 5.4 44 21-64 11-55 (251)
481 PRK14253 phosphate ABC transpo 97.7 6.1E-05 1.3E-09 60.3 5.3 45 21-65 9-54 (249)
482 PRK14527 adenylate kinase; Pro 97.7 2.9E-05 6.4E-10 59.6 3.3 28 42-69 8-35 (191)
483 cd00544 CobU Adenosylcobinamid 97.7 0.0011 2.3E-08 50.0 11.6 31 43-73 2-32 (169)
484 PRK14238 phosphate transporter 97.7 5.3E-05 1.2E-09 61.4 5.0 45 20-64 29-74 (271)
485 PRK11823 DNA repair protein Ra 97.7 0.00026 5.6E-09 61.5 9.5 75 42-120 82-171 (446)
486 PRK10908 cell division protein 97.7 6.1E-05 1.3E-09 59.2 5.2 38 27-64 14-52 (222)
487 PRK14262 phosphate ABC transpo 97.7 6E-05 1.3E-09 60.3 5.2 44 21-64 9-53 (250)
488 PRK11300 livG leucine/isoleuci 97.7 6.2E-05 1.3E-09 60.4 5.3 45 20-64 10-55 (255)
489 PRK11701 phnK phosphonate C-P 97.7 5E-05 1.1E-09 61.1 4.7 44 21-64 12-56 (258)
490 PF00406 ADK: Adenylate kinase 97.7 3E-05 6.6E-10 57.1 3.2 30 45-76 1-30 (151)
491 PRK14255 phosphate ABC transpo 97.7 7E-05 1.5E-09 60.0 5.5 45 20-64 10-55 (252)
492 cd03217 ABC_FeS_Assembly ABC-t 97.7 7.5E-05 1.6E-09 57.8 5.4 43 21-63 6-49 (200)
493 TIGR01288 nodI ATP-binding ABC 97.7 6.9E-05 1.5E-09 61.8 5.5 45 20-64 9-54 (303)
494 PRK14243 phosphate transporter 97.7 7.5E-05 1.6E-09 60.3 5.6 45 20-64 15-60 (264)
495 TIGR01425 SRP54_euk signal rec 97.7 0.00078 1.7E-08 57.8 11.9 35 42-76 102-139 (429)
496 cd03247 ABCC_cytochrome_bd The 97.7 5E-05 1.1E-09 57.6 4.4 36 29-64 16-52 (178)
497 PRK14526 adenylate kinase; Pro 97.7 4.6E-05 1E-09 59.4 4.2 27 42-68 2-28 (211)
498 PRK10619 histidine/lysine/argi 97.7 6.9E-05 1.5E-09 60.3 5.3 44 21-64 11-55 (257)
499 PRK14249 phosphate ABC transpo 97.7 6.2E-05 1.4E-09 60.3 5.1 46 20-65 9-55 (251)
500 PRK11831 putative ABC transpor 97.7 6.4E-05 1.4E-09 60.9 5.1 44 21-64 13-57 (269)
No 1
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-45 Score=288.66 Aligned_cols=222 Identities=54% Similarity=0.876 Sum_probs=208.1
Q ss_pred CCcceeechhhHHhhheeeeEecccceEee-cccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccC
Q psy5910 2 ELDRHIIGQHETKKIVSVGVYNHYKRLFLL-KSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAG 80 (225)
Q Consensus 2 ~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~ 80 (225)
.||++++||+.+|+.|.-+++++|++.... +..++...+.++||+||+|||||.||+.+|+.++.||..-++..+.++|
T Consensus 58 ~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAG 137 (408)
T COG1219 58 HLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAG 137 (408)
T ss_pred HhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhcc
Confidence 589999999999999999999999997654 4455888889999999999999999999999999999999999999999
Q ss_pred ccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccC-CCCCChHHHHHHHHHHHhcCCcCccccccccCCC
Q psy5910 81 YVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPS 159 (225)
Q Consensus 81 ~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~ 159 (225)
|+|++++..+..+++.+.+.+++++.+|+||||||++.++..+.+ .++.+++.+|++||+++++...++|..+++.+|.
T Consensus 138 YVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~ 217 (408)
T COG1219 138 YVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQ 217 (408)
T ss_pred ccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCCCc
Confidence 999999999999999999999999999999999999999987777 8899999999999999999999999999999999
Q ss_pred CCCceeEEecCcceeeccCccccHHHHHHhhcccc-cccccccccc------chhcccCChhHHHHccCCCCC
Q psy5910 160 QNPQVFNIDTTNILFIAGGAFSGIENFIINRINQE-TNFLEKLNNN------YNLICETNTEDLINFGIIPVL 225 (225)
Q Consensus 160 ~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~-i~~~~~~~~~------~~l~~~~~~~~l~~~~~~~~~ 225 (225)
+. ++-|.|+|++|||.++|.+|+.-+.+|.... |+|....... ..+++.+.|+||.+||+||||
T Consensus 218 Qe--~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEf 288 (408)
T COG1219 218 QE--FIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEF 288 (408)
T ss_pred cc--eEEEcccceeEEeccccccHHHHHHHhccCCcccccccccchhhhhhHHHHHHhcChHHHHHcCCcHHH
Confidence 99 9999999999999999999999999999887 9999876532 678899999999999999997
No 2
>KOG0745|consensus
Probab=100.00 E-value=2.8e-37 Score=252.57 Aligned_cols=222 Identities=49% Similarity=0.871 Sum_probs=196.4
Q ss_pred CCcceeechhhHHhhheeeeEecccceEe--------------------------------------------e--cccc
Q psy5910 2 ELDRHIIGQHETKKIVSVGVYNHYKRLFL--------------------------------------------L--KSKN 35 (225)
Q Consensus 2 ~l~~~i~G~~~~~~~l~~~l~~~~~~~~~--------------------------------------------~--~~~~ 35 (225)
.||+.|+||+.+|+.|.-+++++|+++.. . .+.+
T Consensus 142 ~Ldk~VVGQe~AKKvLsVAVYnHYkRI~hn~~s~~~~~a~~s~~~~~~~~P~~~~~~~~~a~~~~~~r~~~~~ld~~~~d 221 (564)
T KOG0745|consen 142 YLDKFVVGQEKAKKVLSVAVYNHYKRIYHNEPSRQKELAEASKSAKDRDNPIELEISESNAQWPNNQRQIAKALDEDDED 221 (564)
T ss_pred HhhhheechhhhhheeeehhhHHHHHHhcchHHHHHHHhhhhhcccCCCCcccccccccccccccccchhcccccccccc
Confidence 58999999999999999999998876533 0 0114
Q ss_pred eeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchh
Q psy5910 36 IYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEID 115 (225)
Q Consensus 36 ~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid 115 (225)
+.+.+.+|||.||+|+|||.||+.+|+.++.||...+|..+..+||+|++++..+..++..+.+.+++++.+|+||||+|
T Consensus 222 v~LeKSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvD 301 (564)
T KOG0745|consen 222 VELEKSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVD 301 (564)
T ss_pred eeeecccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhh
Confidence 55567799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccccC-CCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccc
Q psy5910 116 KISKKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQE 194 (225)
Q Consensus 116 ~l~~~~~~~~-~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~ 194 (225)
++........ .++.+++.+|++||+++|+.-..+|..+.++.+... .+.|+|+|++|||++++.+||..+-||.+.+
T Consensus 302 Ki~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd--~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~ 379 (564)
T KOG0745|consen 302 KITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGD--TVQIDTTNILFIASGAFVGLDKIISRRLDDK 379 (564)
T ss_pred hhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCC--eEEEeccceEEEecccccchHHHHHHhhcch
Confidence 9996554433 579999999999999999988888888877777777 9999999999999999999999999998887
Q ss_pred -cccccccccc------------------chhcccCChhHHHHccCCCCC
Q psy5910 195 -TNFLEKLNNN------------------YNLICETNTEDLINFGIIPVL 225 (225)
Q Consensus 195 -i~~~~~~~~~------------------~~l~~~~~~~~l~~~~~~~~~ 225 (225)
++|..|+... ..++..+.+.||..||+||||
T Consensus 380 slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEf 429 (564)
T KOG0745|consen 380 SLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEF 429 (564)
T ss_pred hcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHH
Confidence 9999994311 448889999999999999997
No 3
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=100.00 E-value=1.1e-35 Score=250.90 Aligned_cols=222 Identities=52% Similarity=0.867 Sum_probs=185.7
Q ss_pred CCcceeechhhHHhhheeeeEecccceEeecc--cceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCccccc
Q psy5910 2 ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKS--KNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEA 79 (225)
Q Consensus 2 ~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~--~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~ 79 (225)
+|+++|+||+++++.|..++++++++...... .+...+.+++||+||||||||++|+++|+.++.+|+.+++..+...
T Consensus 68 ~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~ 147 (412)
T PRK05342 68 HLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEA 147 (412)
T ss_pred HHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccC
Confidence 58899999999999999888777776533211 1344566899999999999999999999999999999999998878
Q ss_pred CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccC-CCCCChHHHHHHHHHHHhcCCcCccccccccCC
Q psy5910 80 GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNP 158 (225)
Q Consensus 80 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~ 158 (225)
+|.|.+....+..++..+.+.+....++||||||+|++.+.+.+.+ .++.+++.+|++|+++||+....++..+++..+
T Consensus 148 gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~ 227 (412)
T PRK05342 148 GYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHP 227 (412)
T ss_pred CcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcC
Confidence 8999988887777777666666777899999999999998754443 567788899999999999877777888888888
Q ss_pred CCCCceeEEecCcceeeccCccccHHHHHHhhcccc-cccccccccc------chhcccCChhHHHHccCCCCC
Q psy5910 159 SQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQE-TNFLEKLNNN------YNLICETNTEDLINFGIIPVL 225 (225)
Q Consensus 159 ~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~-i~~~~~~~~~------~~l~~~~~~~~l~~~~~~~~~ 225 (225)
+.+ +++|+|+|++|||++++.+++..+.+|.... ++|....... ..+++++.+++|.++|++|||
T Consensus 228 ~~~--~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEf 299 (412)
T PRK05342 228 QQE--FIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEF 299 (412)
T ss_pred CCC--eEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHH
Confidence 877 9999999999999999999988888887655 8887543221 467788999999999999997
No 4
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.2e-36 Score=239.73 Aligned_cols=171 Identities=27% Similarity=0.371 Sum_probs=147.1
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD 84 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~ 84 (225)
+.|.|++++++.|++.+..++.++..+...++.+|+ +||||||||||||.|||++|+..++.|+.+.++.+.. +|.|+
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPK-GVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVq-KYiGE 228 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPK-GVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQ-KYIGE 228 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCC-ceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHH-HHhcc
Confidence 468999999999999999999999999999997655 9999999999999999999999999999999999987 79999
Q ss_pred cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHH---HHHHhcCCcCccccccccCCCCC
Q psy5910 85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSL---LKLIEGVNLSITSLAEKKNPSQN 161 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~L---l~~l~~~~~~~~~~~~~~~~~~~ 161 (225)
. ...++.+|..+ +...|+||||||||++..+|.... ...++++|-.+ +..||++. +..+
T Consensus 229 G-aRlVRelF~lA----rekaPsIIFiDEIDAIg~kR~d~~--t~gDrEVQRTmleLL~qlDGFD-----------~~~n 290 (406)
T COG1222 229 G-ARLVRELFELA----REKAPSIIFIDEIDAIGAKRFDSG--TSGDREVQRTMLELLNQLDGFD-----------PRGN 290 (406)
T ss_pred c-hHHHHHHHHHH----hhcCCeEEEEechhhhhcccccCC--CCchHHHHHHHHHHHHhccCCC-----------CCCC
Confidence 8 78899999887 677999999999999998886543 12334455554 45556543 2334
Q ss_pred CceeEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910 162 PQVFNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN 204 (225)
Q Consensus 162 ~~~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~ 204 (225)
+-+|++||+ ++-||||++| |||++|+||.|+.+.
T Consensus 291 --vKVI~ATNR-------~D~LDPALLRPGR~DRkIEfplPd~~g 326 (406)
T COG1222 291 --VKVIMATNR-------PDILDPALLRPGRFDRKIEFPLPDEEG 326 (406)
T ss_pred --eEEEEecCC-------ccccChhhcCCCcccceeecCCCCHHH
Confidence 999999999 8899999999 999999999999977
No 5
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=100.00 E-value=1.1e-34 Score=243.60 Aligned_cols=222 Identities=54% Similarity=0.873 Sum_probs=183.7
Q ss_pred CCcceeechhhHHhhheeeeEecccceEee--c--ccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCccc
Q psy5910 2 ELDRHIIGQHETKKIVSVGVYNHYKRLFLL--K--SKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFT 77 (225)
Q Consensus 2 ~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~--~--~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~ 77 (225)
.|+++|+||+++++.+..++++++++.... . +.+......++||+||||||||++|+++|+.++.+|..+++..+.
T Consensus 74 ~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~ 153 (413)
T TIGR00382 74 HLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLT 153 (413)
T ss_pred HhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcc
Confidence 589999999999999999998888776431 1 112334457899999999999999999999999999999999888
Q ss_pred ccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccC-CCCCChHHHHHHHHHHHhcCCcCcccccccc
Q psy5910 78 EAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKK 156 (225)
Q Consensus 78 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~ 156 (225)
..+|.|.+....+...+....+.+...+++||||||+|++.+++.+.+ +++.+++++|+.|+++|++....++..+++.
T Consensus 154 ~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~ 233 (413)
T TIGR00382 154 EAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRK 233 (413)
T ss_pred ccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCcc
Confidence 778999987777777777666667778899999999999998765554 6688888999999999997666667778888
Q ss_pred CCCCCCceeEEecCcceeeccCccccHHHHHHhhcccc-cccccccccc----chhcccCChhHHHHccCCCCC
Q psy5910 157 NPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQE-TNFLEKLNNN----YNLICETNTEDLINFGIIPVL 225 (225)
Q Consensus 157 ~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~-i~~~~~~~~~----~~l~~~~~~~~l~~~~~~~~~ 225 (225)
.++++ +++|+|+|++|||++++++++..+.+|.... ++|....... ..+++++.++++.++|++|||
T Consensus 234 ~~~~~--~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEf 305 (413)
T TIGR00382 234 HPYQE--FIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEF 305 (413)
T ss_pred ccCCC--eEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHH
Confidence 88888 9999999999999999999998888887655 8887543211 255667778999999999987
No 6
>KOG0738|consensus
Probab=100.00 E-value=3.3e-33 Score=226.11 Aligned_cols=174 Identities=24% Similarity=0.370 Sum_probs=149.5
Q ss_pred eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCc
Q psy5910 6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDD 85 (225)
Q Consensus 6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~ 85 (225)
.|.|++++|+.|.+++..+..-+.-.+ ++..|.++||++||||||||+||+++|.+++..|+.++.+++.+ +|.|+.
T Consensus 213 DIagl~~AK~lL~EAVvlPi~mPe~F~--GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltS-KwRGeS 289 (491)
T KOG0738|consen 213 DIAGLHEAKKLLKEAVVLPIWMPEFFK--GIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTS-KWRGES 289 (491)
T ss_pred hhcchHHHHHHHHHHHhhhhhhHHHHh--hcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhh-hhccch
Confidence 469999999999999977665544444 33467789999999999999999999999999999999999985 899998
Q ss_pred HHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCcee
Q psy5910 86 VESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVF 165 (225)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~ 165 (225)
+++++-+|..+ +...|++|||||||+++.+|+.. +...+++++.+.||..||+...+... .+.|+
T Consensus 290 -EKlvRlLFemA----RfyAPStIFiDEIDslcs~RG~s-~EHEaSRRvKsELLvQmDG~~~t~e~---------~k~Vm 354 (491)
T KOG0738|consen 290 -EKLVRLLFEMA----RFYAPSTIFIDEIDSLCSQRGGS-SEHEASRRVKSELLVQMDGVQGTLEN---------SKVVM 354 (491)
T ss_pred -HHHHHHHHHHH----HHhCCceeehhhHHHHHhcCCCc-cchhHHHHHHHHHHHHhhcccccccc---------ceeEE
Confidence 89999999887 66799999999999999988765 44567788999999999987655322 12289
Q ss_pred EEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 166 NIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 166 ~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
++++||.+| +||+|++|||.++|.+|.|+.+.
T Consensus 355 VLAATN~PW-------diDEAlrRRlEKRIyIPLP~~~~ 386 (491)
T KOG0738|consen 355 VLAATNFPW-------DIDEALRRRLEKRIYIPLPDAEA 386 (491)
T ss_pred EEeccCCCc-------chHHHHHHHHhhheeeeCCCHHH
Confidence 999999999 99999999999999999999877
No 7
>KOG0730|consensus
Probab=99.97 E-value=5.1e-33 Score=237.88 Aligned_cols=171 Identities=26% Similarity=0.340 Sum_probs=153.6
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD 84 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~ 84 (225)
+.|.|++++|+.|.+++.++.+++..+..+++.++ ++||||||||||||++||++|++.+++|+.+.+.++.+ +|+|+
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~pp-kGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~s-k~vGe 511 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPP-KGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFS-KYVGE 511 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCC-ceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHH-HhcCc
Confidence 46799999999999999999999999998888544 59999999999999999999999999999999999986 79999
Q ss_pred cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910 85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV 164 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~ 164 (225)
. +..++.+|+++ +...|+|+||||+|++..+|++..+ ...+++.+.||+.||+.... ++ +
T Consensus 512 S-Er~ir~iF~kA----R~~aP~IiFfDEiDsi~~~R~g~~~--~v~~RVlsqLLtEmDG~e~~-----------k~--V 571 (693)
T KOG0730|consen 512 S-ERAIREVFRKA----RQVAPCIIFFDEIDALAGSRGGSSS--GVTDRVLSQLLTEMDGLEAL-----------KN--V 571 (693)
T ss_pred h-HHHHHHHHHHH----hhcCCeEEehhhHHhHhhccCCCcc--chHHHHHHHHHHHccccccc-----------Cc--E
Confidence 8 88999999998 6778999999999999999974333 56788999999999986422 23 9
Q ss_pred eEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910 165 FNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN 204 (225)
Q Consensus 165 ~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~ 204 (225)
++|++||+ ++.||+|++| |||+.|++|.|+.+.
T Consensus 572 ~ViAATNR-------pd~ID~ALlRPGRlD~iiyVplPD~~a 606 (693)
T KOG0730|consen 572 LVIAATNR-------PDMIDPALLRPGRLDRIIYVPLPDLEA 606 (693)
T ss_pred EEEeccCC-------hhhcCHHHcCCcccceeEeecCccHHH
Confidence 99999999 8899999999 999999999999876
No 8
>KOG0733|consensus
Probab=99.97 E-value=3.1e-32 Score=230.93 Aligned_cols=171 Identities=25% Similarity=0.382 Sum_probs=151.5
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD 84 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~ 84 (225)
+.|.|+++++.+|..++.++.+++..++..++..| .+|||+||||||||.||+++|++.+.+|+.+.+.++.+ +|+|+
T Consensus 511 ~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~P-sGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlN-kYVGE 588 (802)
T KOG0733|consen 511 DDIGALEEVRLELNMAILAPIKRPDLFKALGIDAP-SGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLN-KYVGE 588 (802)
T ss_pred hhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCC-CceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHH-HHhhh
Confidence 35799999999999999999999999999999764 59999999999999999999999999999999999986 79999
Q ss_pred cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910 85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV 164 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~ 164 (225)
. +..++.+|+++ +...||||||||+|++.+.|+... ...+.++.+.||..||+.. ++.++
T Consensus 589 S-ErAVR~vFqRA----R~saPCVIFFDEiDaL~p~R~~~~--s~~s~RvvNqLLtElDGl~-------------~R~gV 648 (802)
T KOG0733|consen 589 S-ERAVRQVFQRA----RASAPCVIFFDEIDALVPRRSDEG--SSVSSRVVNQLLTELDGLE-------------ERRGV 648 (802)
T ss_pred H-HHHHHHHHHHh----hcCCCeEEEecchhhcCcccCCCC--chhHHHHHHHHHHHhcccc-------------cccce
Confidence 8 88899999998 677999999999999999987643 5667889999999999863 23349
Q ss_pred eEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910 165 FNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN 204 (225)
Q Consensus 165 ~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~ 204 (225)
++|++||+ ++-+|+|++| |||+.+..+.|+.+.
T Consensus 649 ~viaATNR-------PDiIDpAiLRPGRlDk~LyV~lPn~~e 683 (802)
T KOG0733|consen 649 YVIAATNR-------PDIIDPAILRPGRLDKLLYVGLPNAEE 683 (802)
T ss_pred EEEeecCC-------CcccchhhcCCCccCceeeecCCCHHH
Confidence 99999999 8899999999 999996666666654
No 9
>KOG0739|consensus
Probab=99.97 E-value=7.3e-31 Score=206.39 Aligned_cols=170 Identities=23% Similarity=0.354 Sum_probs=146.0
Q ss_pred eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCc
Q psy5910 6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDD 85 (225)
Q Consensus 6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~ 85 (225)
.|.|++.+|+.|.+++..+.+-++...+-+ .|.+++|||||||||||.||+++|.+.+..|+.++.+++.+ +|.|+.
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR--~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvS-KWmGES 210 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKR--KPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS-KWMGES 210 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCC--CcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHH-HHhccH
Confidence 468999999999999988877666654333 45679999999999999999999999999999999999986 799998
Q ss_pred HHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCcee
Q psy5910 86 VESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVF 165 (225)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~ 165 (225)
++.+..+|..+ +...|+||||||||.++..|+.. ...+.+++...|+-.|.+... ++.++.
T Consensus 211 -EkLVknLFemA----Re~kPSIIFiDEiDslcg~r~en--EseasRRIKTEfLVQMqGVG~------------d~~gvL 271 (439)
T KOG0739|consen 211 -EKLVKNLFEMA----RENKPSIIFIDEIDSLCGSRSEN--ESEASRRIKTEFLVQMQGVGN------------DNDGVL 271 (439)
T ss_pred -HHHHHHHHHHH----HhcCCcEEEeehhhhhccCCCCC--chHHHHHHHHHHHHhhhcccc------------CCCceE
Confidence 88899999887 67799999999999999887653 345667899999999998652 223399
Q ss_pred EEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 166 NIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 166 ~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
++++||++| -||.|++|||+++|++|.|+.-.
T Consensus 272 VLgATNiPw-------~LDsAIRRRFekRIYIPLPe~~A 303 (439)
T KOG0739|consen 272 VLGATNIPW-------VLDSAIRRRFEKRIYIPLPEAHA 303 (439)
T ss_pred EEecCCCch-------hHHHHHHHHhhcceeccCCcHHH
Confidence 999999988 89999999999999999999754
No 10
>KOG0736|consensus
Probab=99.97 E-value=5.6e-31 Score=228.10 Aligned_cols=174 Identities=24% Similarity=0.344 Sum_probs=148.7
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD 84 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~ 84 (225)
++|.|.+++|..+.+.+..++++++... .++ .++.+||||||||||||.+|+++|.++...|+.+.+.++.. .|+|+
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfs-sgl-rkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLN-MYVGq 748 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFS-SGL-RKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLN-MYVGQ 748 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhh-ccc-cccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHH-HHhcc
Confidence 4579999999999999999888876543 222 34569999999999999999999999999999999999986 59999
Q ss_pred cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910 85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV 164 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~ 164 (225)
. +++++.+|+++ +.+.||||||||+|++.|.|+..+....--+++...|+..||+.... +.+. +
T Consensus 749 S-E~NVR~VFerA----R~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~---------~s~~--V 812 (953)
T KOG0736|consen 749 S-EENVREVFERA----RSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDS---------SSQD--V 812 (953)
T ss_pred h-HHHHHHHHHHh----hccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCC---------CCCc--e
Confidence 8 88999999998 77899999999999999999887755556678999999999986421 2333 9
Q ss_pred eEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910 165 FNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN 204 (225)
Q Consensus 165 ~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~ 204 (225)
++|++||+ ++-||+|++| |||+-++...++.++
T Consensus 813 FViGATNR-------PDLLDpALLRPGRFDKLvyvG~~~d~e 847 (953)
T KOG0736|consen 813 FVIGATNR-------PDLLDPALLRPGRFDKLVYVGPNEDAE 847 (953)
T ss_pred EEEecCCC-------ccccChhhcCCCccceeEEecCCccHH
Confidence 99999999 9999999999 999997776666554
No 11
>KOG0733|consensus
Probab=99.97 E-value=5.9e-31 Score=223.22 Aligned_cols=174 Identities=22% Similarity=0.350 Sum_probs=148.0
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD 84 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~ 84 (225)
+.|.|.++...+|.+.+.. ..+++.+...++. |+++||||||||||||+||+++|++++.||+.+++..+.+ ++.|+
T Consensus 190 ~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~-PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivS-GvSGE 266 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIH-IKHPEVFSSLGVR-PPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVS-GVSGE 266 (802)
T ss_pred hhccChHHHHHHHHHHHHH-hcCchhHhhcCCC-CCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhc-ccCcc
Confidence 4679999999999887754 7788888888885 5569999999999999999999999999999999999985 89999
Q ss_pred cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910 85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV 164 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~ 164 (225)
. ++.++.+|..+ ....|||+||||||.+.++|.... ....+++...|+..||+....- .....+
T Consensus 267 S-EkkiRelF~~A----~~~aPcivFiDeIDAI~pkRe~aq--reMErRiVaQLlt~mD~l~~~~---------~~g~~V 330 (802)
T KOG0733|consen 267 S-EKKIRELFDQA----KSNAPCIVFIDEIDAITPKREEAQ--REMERRIVAQLLTSMDELSNEK---------TKGDPV 330 (802)
T ss_pred c-HHHHHHHHHHH----hccCCeEEEeecccccccchhhHH--HHHHHHHHHHHHHhhhcccccc---------cCCCCe
Confidence 8 77899999987 567899999999999999987642 3345678899999999865331 112239
Q ss_pred eEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910 165 FNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN 204 (225)
Q Consensus 165 ~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~ 204 (225)
++|++||+ ++.+|+|++| |||++|....|++.+
T Consensus 331 lVIgATnR-------PDslDpaLRRaGRFdrEI~l~vP~e~a 365 (802)
T KOG0733|consen 331 LVIGATNR-------PDSLDPALRRAGRFDREICLGVPSETA 365 (802)
T ss_pred EEEecCCC-------CcccCHHHhccccccceeeecCCchHH
Confidence 99999999 9999999999 999999999888866
No 12
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.96 E-value=1.1e-29 Score=196.30 Aligned_cols=168 Identities=27% Similarity=0.388 Sum_probs=133.1
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD 84 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~ 84 (225)
+.|+||+++|..++-.+. .+.++... +- +.+++||||||||||||++|+++|++.+.|++.+++..+.. .|+|+
T Consensus 121 ddViGqEeAK~kcrli~~-yLenPe~F---g~-WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liG-ehVGd 194 (368)
T COG1223 121 DDVIGQEEAKRKCRLIME-YLENPERF---GD-WAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIG-EHVGD 194 (368)
T ss_pred hhhhchHHHHHHHHHHHH-HhhChHHh---cc-cCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHH-HHhhh
Confidence 457999999988865432 22233222 22 44569999999999999999999999999999999988874 57887
Q ss_pred cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910 85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV 164 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~ 164 (225)
. ...+..++.++ +...|||+||||+|.+.-+|.-..=+ ..-.++.++|+..||+.. ++-++
T Consensus 195 g-ar~Ihely~rA----~~~aPcivFiDE~DAiaLdRryQelR-GDVsEiVNALLTelDgi~-------------eneGV 255 (368)
T COG1223 195 G-ARRIHELYERA----RKAAPCIVFIDELDAIALDRRYQELR-GDVSEIVNALLTELDGIK-------------ENEGV 255 (368)
T ss_pred H-HHHHHHHHHHH----HhcCCeEEEehhhhhhhhhhhHHHhc-ccHHHHHHHHHHhccCcc-------------cCCce
Confidence 6 66678888877 67799999999999999877544311 122347899999999854 22339
Q ss_pred eEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 165 FNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 165 ~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
++|++||. ++-||+|+++||...|+|..|+.++
T Consensus 256 vtIaaTN~-------p~~LD~aiRsRFEeEIEF~LP~~eE 288 (368)
T COG1223 256 VTIAATNR-------PELLDPAIRSRFEEEIEFKLPNDEE 288 (368)
T ss_pred EEEeecCC-------hhhcCHHHHhhhhheeeeeCCChHH
Confidence 99999999 8899999999999999999999876
No 13
>KOG0727|consensus
Probab=99.96 E-value=2.7e-29 Score=193.84 Aligned_cols=172 Identities=26% Similarity=0.364 Sum_probs=141.6
Q ss_pred eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCc
Q psy5910 6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDD 85 (225)
Q Consensus 6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~ 85 (225)
.|.|.+-.|+.+++++..++-+...++.+++. |+++||+|||||||||+|++++|+.....|+++.++.+.. +|.|+.
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigid-pprgvllygppg~gktml~kava~~t~a~firvvgsefvq-kylgeg 233 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGID-PPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ-KYLGEG 233 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCC-CCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHH-HHhccC
Confidence 57899999999999999999888888888885 4569999999999999999999999999999999999986 799987
Q ss_pred HHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccC-CCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910 86 VESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV 164 (225)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~ 164 (225)
-.+++.+|..+ +...|+|+||||+|++..+|=... +.+..-+++.-.|+..||++.. ..+ +
T Consensus 234 -prmvrdvfrla----kenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq-----------~~n--v 295 (408)
T KOG0727|consen 234 -PRMVRDVFRLA----KENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQ-----------TTN--V 295 (408)
T ss_pred -cHHHHHHHHHH----hccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCc-----------ccc--e
Confidence 56788888776 667899999999999987763332 3333333444455556666432 223 8
Q ss_pred eEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910 165 FNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN 204 (225)
Q Consensus 165 ~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~ 204 (225)
-+|++||+ .+.+|||++| |+|++|+||.|+..+
T Consensus 296 kvimatnr-------adtldpallrpgrldrkiefplpdrrq 330 (408)
T KOG0727|consen 296 KVIMATNR-------ADTLDPALLRPGRLDRKIEFPLPDRRQ 330 (408)
T ss_pred EEEEecCc-------ccccCHhhcCCccccccccCCCCchhh
Confidence 89999999 7889999999 999999999999987
No 14
>KOG0734|consensus
Probab=99.96 E-value=3.4e-29 Score=209.80 Aligned_cols=178 Identities=24% Similarity=0.320 Sum_probs=143.4
Q ss_pred cceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccC
Q psy5910 4 DRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVG 83 (225)
Q Consensus 4 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g 83 (225)
.+++.|.+++|++|.+.+ .+++.+..+...+-..|+ +|||+||||||||+|||++|.+.+.||++..++.+.+ -|+|
T Consensus 303 F~dVkG~DEAK~ELeEiV-efLkdP~kftrLGGKLPK-GVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdE-m~VG 379 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIV-EFLKDPTKFTRLGGKLPK-GVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDE-MFVG 379 (752)
T ss_pred cccccChHHHHHHHHHHH-HHhcCcHHhhhccCcCCC-ceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhh-hhhc
Confidence 356799999999998855 444555555555555555 8999999999999999999999999999999999986 5999
Q ss_pred CcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCc
Q psy5910 84 DDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQ 163 (225)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~ 163 (225)
.. ...++.+|+.+ ++..||||||||+|+++.+|...... ...-..+.|+..||++. ++-+
T Consensus 380 vG-ArRVRdLF~aA----k~~APcIIFIDEiDavG~kR~~~~~~--y~kqTlNQLLvEmDGF~-------------qNeG 439 (752)
T KOG0734|consen 380 VG-ARRVRDLFAAA----KARAPCIIFIDEIDAVGGKRNPSDQH--YAKQTLNQLLVEMDGFK-------------QNEG 439 (752)
T ss_pred cc-HHHHHHHHHHH----HhcCCeEEEEechhhhcccCCccHHH--HHHHHHHHHHHHhcCcC-------------cCCc
Confidence 87 66789999887 67799999999999999887543211 22335677888888854 3334
Q ss_pred eeEEecCcceeeccCccccHHHHHHh--hcccccccccccccc--chhcccC
Q psy5910 164 VFNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN--YNLICET 211 (225)
Q Consensus 164 ~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~--~~l~~~~ 211 (225)
+++|++||. ++.||+|+.| |||+.|..|.|+-.. ++|..++
T Consensus 440 iIvigATNf-------pe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl 484 (752)
T KOG0734|consen 440 IIVIGATNF-------PEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYL 484 (752)
T ss_pred eEEEeccCC-------hhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHH
Confidence 999999999 9999999999 999999999999876 4444443
No 15
>KOG0728|consensus
Probab=99.95 E-value=4.7e-29 Score=192.27 Aligned_cols=173 Identities=24% Similarity=0.366 Sum_probs=145.4
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD 84 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~ 84 (225)
+.|.|++++++.+++-+..+.+++...+..++..|+ ++|||||||||||.+|+++|....+.|++++++.+.. +|.|+
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPK-GvlLygppgtGktLlaraVahht~c~firvsgselvq-k~ige 224 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPK-GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ-KYIGE 224 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCc-ceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHH-HHhhh
Confidence 467899999999999999999999999999997766 8999999999999999999999999999999999986 69998
Q ss_pred cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccC-CCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCc
Q psy5910 85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQ 163 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~ 163 (225)
. +..++.+|-.+ +...|+|+|+||||+++..|...+ +.+..-++..-.|+..||++..+ .+
T Consensus 225 g-srmvrelfvma----rehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeat-----------kn-- 286 (404)
T KOG0728|consen 225 G-SRMVRELFVMA----REHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEAT-----------KN-- 286 (404)
T ss_pred h-HHHHHHHHHHH----HhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccc-----------cc--
Confidence 7 67788887665 667899999999999998876554 44444444555566666665422 23
Q ss_pred eeEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910 164 VFNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN 204 (225)
Q Consensus 164 ~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~ 204 (225)
+-+|.+||+ .+-+|+|++| |+|++|+||+|+++.
T Consensus 287 ikvimatnr-------idild~allrpgridrkiefp~p~e~a 322 (404)
T KOG0728|consen 287 IKVIMATNR-------IDILDPALLRPGRIDRKIEFPPPNEEA 322 (404)
T ss_pred eEEEEeccc-------cccccHhhcCCCcccccccCCCCCHHH
Confidence 888999999 7789999999 999999999999876
No 16
>KOG0652|consensus
Probab=99.95 E-value=3.1e-28 Score=188.78 Aligned_cols=173 Identities=20% Similarity=0.310 Sum_probs=141.0
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD 84 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~ 84 (225)
..|.|.+++++.|.+++..+..+.....+.++..|+ ++|+|||||||||.+||+.|...+..|..+.+..+.. -|.|+
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPK-GvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQ-MfIGd 248 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPK-GVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ-MFIGD 248 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCC-ceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHh-hhhcc
Confidence 468999999999999999999998888888986554 8999999999999999999999999999999988876 48887
Q ss_pred cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccC-CCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCc
Q psy5910 85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQ 163 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~ 163 (225)
. .+.++..|..+ +...|+|+||||+|.++.+|-... ..+..-++..-.|+..||++. +...
T Consensus 249 G-AkLVRDAFaLA----KEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFs-----------s~~~-- 310 (424)
T KOG0652|consen 249 G-AKLVRDAFALA----KEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFS-----------SDDR-- 310 (424)
T ss_pred h-HHHHHHHHHHh----hccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCC-----------Cccc--
Confidence 6 67788887766 667899999999999998764322 333333333444555556643 2233
Q ss_pred eeEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910 164 VFNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN 204 (225)
Q Consensus 164 ~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~ 204 (225)
+-+|++||+ .+-+|||++| |+|++|+||.|.++.
T Consensus 311 vKviAATNR-------vDiLDPALlRSGRLDRKIEfP~Pne~a 346 (424)
T KOG0652|consen 311 VKVIAATNR-------VDILDPALLRSGRLDRKIEFPHPNEEA 346 (424)
T ss_pred eEEEeeccc-------ccccCHHHhhcccccccccCCCCChHH
Confidence 889999999 6789999999 999999999999976
No 17
>KOG0737|consensus
Probab=99.94 E-value=2.1e-27 Score=191.89 Aligned_cols=174 Identities=22% Similarity=0.327 Sum_probs=147.5
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD 84 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~ 84 (225)
+.|.|++.+++.+.+.+..+..++..+....+..+..+|||+||||||||++|+++|++.+.+|+.+..+.+.+ +|.|+
T Consensus 92 ~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~-KWfgE 170 (386)
T KOG0737|consen 92 DDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTS-KWFGE 170 (386)
T ss_pred hhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccch-hhHHH
Confidence 46899999999999999999999888877777788899999999999999999999999999999999999987 78888
Q ss_pred cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910 85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV 164 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~ 164 (225)
. .+.++.+|..+ .+-+|+++||||+|++...|.. +.........+.++...|+.... +... +
T Consensus 171 ~-eKlv~AvFslA----sKl~P~iIFIDEvds~L~~R~s--~dHEa~a~mK~eFM~~WDGl~s~---------~~~r--V 232 (386)
T KOG0737|consen 171 A-QKLVKAVFSLA----SKLQPSIIFIDEVDSFLGQRRS--TDHEATAMMKNEFMALWDGLSSK---------DSER--V 232 (386)
T ss_pred H-HHHHHHHHhhh----hhcCcceeehhhHHHHHhhccc--chHHHHHHHHHHHHHHhccccCC---------CCce--E
Confidence 7 78888888876 5679999999999999988732 22333444677788888875432 2233 9
Q ss_pred eEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 165 FNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 165 ~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
+++++||+ +.++|+|++||+.+++..+.|+.++
T Consensus 233 lVlgATNR-------P~DlDeAiiRR~p~rf~V~lP~~~q 265 (386)
T KOG0737|consen 233 LVLGATNR-------PFDLDEAIIRRLPRRFHVGLPDAEQ 265 (386)
T ss_pred EEEeCCCC-------CccHHHHHHHhCcceeeeCCCchhh
Confidence 99999999 5599999999999998888888776
No 18
>KOG0726|consensus
Probab=99.94 E-value=1.5e-27 Score=187.24 Aligned_cols=174 Identities=22% Similarity=0.313 Sum_probs=143.5
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD 84 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~ 84 (225)
..|.|.+.+++.+.+++..++-++.-+...++..| .+|+|||+||||||.||+++|+.....|+++-++++.. +|.|+
T Consensus 185 ~diGGle~QiQEiKEsvELPLthPE~YeemGikpP-KGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQ-kylGd 262 (440)
T KOG0726|consen 185 ADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPP-KGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQ-KYLGD 262 (440)
T ss_pred cccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCC-CeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHH-HHhcc
Confidence 35799999999999999999999999998998655 48999999999999999999999999999999999987 69998
Q ss_pred cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910 85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV 164 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~ 164 (225)
. .+.++.+|+.+ ....|+|+||||||.+..+|=.. +....+++|..++++|.....- ..+..+
T Consensus 263 G-pklvRqlF~vA----~e~apSIvFiDEIdAiGtKRyds--~SggerEiQrtmLELLNQldGF----------dsrgDv 325 (440)
T KOG0726|consen 263 G-PKLVRELFRVA----EEHAPSIVFIDEIDAIGTKRYDS--NSGGEREIQRTMLELLNQLDGF----------DSRGDV 325 (440)
T ss_pred c-hHHHHHHHHHH----HhcCCceEEeehhhhhccccccC--CCccHHHHHHHHHHHHHhccCc----------cccCCe
Confidence 7 67888998877 66789999999999999876322 2223455677666665433211 112338
Q ss_pred eEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910 165 FNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN 204 (225)
Q Consensus 165 ~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~ 204 (225)
-+|.+||. .+.+|||++| |+|++|.|+.|++..
T Consensus 326 KvimATnr-------ie~LDPaLiRPGrIDrKIef~~pDe~T 360 (440)
T KOG0726|consen 326 KVIMATNR-------IETLDPALIRPGRIDRKIEFPLPDEKT 360 (440)
T ss_pred EEEEeccc-------ccccCHhhcCCCccccccccCCCchhh
Confidence 89999999 8899999999 999999999999865
No 19
>KOG0735|consensus
Probab=99.94 E-value=5.5e-27 Score=202.02 Aligned_cols=171 Identities=25% Similarity=0.345 Sum_probs=148.1
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD 84 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~ 84 (225)
+.|.|+.++++.|.+.+.++.+.+..+....+..+ .+||||||||||||.||.++|..++..|+.+.+.++.+ +|.|.
T Consensus 667 ~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~-~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~-KyIGa 744 (952)
T KOG0735|consen 667 EDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLR-TGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLS-KYIGA 744 (952)
T ss_pred eecccHHHHHHHHHHHHhccccchHHHhhCCcccc-cceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHH-HHhcc
Confidence 35699999999999999998888888777777554 48999999999999999999999999999999999985 79999
Q ss_pred cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910 85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV 164 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~ 164 (225)
. ++.++.+|.++ +.+.|||+||||+|++.|+|+.++ ..-.+++.+.|+..||+.... .++
T Consensus 745 S-Eq~vR~lF~rA----~~a~PCiLFFDEfdSiAPkRGhDs--TGVTDRVVNQlLTelDG~Egl-------------~GV 804 (952)
T KOG0735|consen 745 S-EQNVRDLFERA----QSAKPCILFFDEFDSIAPKRGHDS--TGVTDRVVNQLLTELDGAEGL-------------DGV 804 (952)
T ss_pred c-HHHHHHHHHHh----hccCCeEEEeccccccCcccCCCC--CCchHHHHHHHHHhhcccccc-------------ceE
Confidence 8 88899999998 778999999999999999986543 334567999999999986532 128
Q ss_pred eEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910 165 FNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN 204 (225)
Q Consensus 165 ~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~ 204 (225)
+++++|.+ ++-||+|++| |+|+.+..+.|++.+
T Consensus 805 ~i~aaTsR-------pdliDpALLRpGRlD~~v~C~~P~~~e 839 (952)
T KOG0735|consen 805 YILAATSR-------PDLIDPALLRPGRLDKLVYCPLPDEPE 839 (952)
T ss_pred EEEEecCC-------ccccCHhhcCCCccceeeeCCCCCcHH
Confidence 88888877 8899999999 999999999999865
No 20
>KOG0731|consensus
Probab=99.93 E-value=1.1e-26 Score=204.10 Aligned_cols=173 Identities=27% Similarity=0.359 Sum_probs=147.1
Q ss_pred cceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccC
Q psy5910 4 DRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVG 83 (225)
Q Consensus 4 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g 83 (225)
.+++.|.+++|++|.+.+ .+++++..+.+.+...|+ ++||+||||||||.||+++|.+.+.||+.++++++.+ .|.|
T Consensus 310 FkDVAG~deAK~El~E~V-~fLKNP~~Y~~lGAKiPk-GvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE-~~~g 386 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFV-KFLKNPEQYQELGAKIPK-GVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVE-MFVG 386 (774)
T ss_pred cccccCcHHHHHHHHHHH-HHhcCHHHHHHcCCcCcC-ceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHH-Hhcc
Confidence 357899999999999955 666778888888887665 8999999999999999999999999999999999987 4777
Q ss_pred CcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccc--cCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCC
Q psy5910 84 DDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDV--VSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQN 161 (225)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~--~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~ 161 (225)
.. ...++.+|..+ +...|+|+|+||+|.+...+.. ..+.+.+.+...+.|+..||+.... ..
T Consensus 387 ~~-asrvr~lf~~a----r~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~-----------~~ 450 (774)
T KOG0731|consen 387 VG-ASRVRDLFPLA----RKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS-----------KG 450 (774)
T ss_pred cc-hHHHHHHHHHh----hccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC-----------Cc
Confidence 66 66788999887 6779999999999999999853 2245556667889999999986432 22
Q ss_pred CceeEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910 162 PQVFNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN 204 (225)
Q Consensus 162 ~~~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~ 204 (225)
++++++||+ ++.+|+|++| |||+.|..+.|+...
T Consensus 451 --vi~~a~tnr-------~d~ld~allrpGRfdr~i~i~~p~~~~ 486 (774)
T KOG0731|consen 451 --VIVLAATNR-------PDILDPALLRPGRFDRQIQIDLPDVKG 486 (774)
T ss_pred --EEEEeccCC-------ccccCHHhcCCCccccceeccCCchhh
Confidence 899999999 8899999999 999999999998865
No 21
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.4e-26 Score=202.19 Aligned_cols=171 Identities=26% Similarity=0.367 Sum_probs=144.0
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD 84 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~ 84 (225)
..++|++.+++.+.+.+.++..++..+...+... ..++||+||||||||++|+++|++++.+|+.+.++++.+ +|.|+
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~-~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~s-k~vGe 319 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRP-PKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLS-KWVGE 319 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCC-CCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhc-cccch
Confidence 3568899999999999988888877665545533 348999999999999999999999999999999998875 79998
Q ss_pred cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910 85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV 164 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~ 164 (225)
. ++.++.+|..+ .+..|+||||||+|++.+.++... +.+..++.+.|+..|++... ..+ +
T Consensus 320 s-ek~ir~~F~~A----~~~~p~iiFiDEiDs~~~~r~~~~--~~~~~r~~~~lL~~~d~~e~-----------~~~--v 379 (494)
T COG0464 320 S-EKNIRELFEKA----RKLAPSIIFIDEIDSLASGRGPSE--DGSGRRVVGQLLTELDGIEK-----------AEG--V 379 (494)
T ss_pred H-HHHHHHHHHHH----HcCCCcEEEEEchhhhhccCCCCC--chHHHHHHHHHHHHhcCCCc-----------cCc--e
Confidence 7 88899999887 567899999999999999875432 22236799999999986532 223 8
Q ss_pred eEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910 165 FNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN 204 (225)
Q Consensus 165 ~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~ 204 (225)
++|++||. ++.+|+|++| ||++.+.++.|+.+.
T Consensus 380 ~vi~aTN~-------p~~ld~a~lR~gRfd~~i~v~~pd~~~ 414 (494)
T COG0464 380 LVIAATNR-------PDDLDPALLRPGRFDRLIYVPLPDLEE 414 (494)
T ss_pred EEEecCCC-------ccccCHhhcccCccceEeecCCCCHHH
Confidence 99999999 6699999999 999999999999977
No 22
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.93 E-value=2.4e-26 Score=191.25 Aligned_cols=189 Identities=43% Similarity=0.647 Sum_probs=150.2
Q ss_pred CCcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCc
Q psy5910 2 ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGY 81 (225)
Q Consensus 2 ~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~ 81 (225)
+|+++|+||+++++.+..++++.|.+........-..+++++||+||||||||++|+++|+.++.+|+.+++..+...+|
T Consensus 9 ~Ld~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~ 88 (441)
T TIGR00390 9 ELDKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGY 88 (441)
T ss_pred HHhhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCc
Confidence 58999999999999999999888777644443344455689999999999999999999999999999999998876789
Q ss_pred cCCcHHHHHHHHHHhc---------------------------------ch-----------------------------
Q psy5910 82 VGDDVESIIQKLLHEC---------------------------------DY----------------------------- 99 (225)
Q Consensus 82 ~g~~~~~~~~~~~~~~---------------------------------~~----------------------------- 99 (225)
.|.+.+..++.++..+ ..
T Consensus 89 vG~dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~ 168 (441)
T TIGR00390 89 VGRDVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDK 168 (441)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCc
Confidence 9987777666665443 00
Q ss_pred ----h---------------------------------------------------------------------hhhhCC
Q psy5910 100 ----D---------------------------------------------------------------------VELAEQ 106 (225)
Q Consensus 100 ----~---------------------------------------------------------------------~~~~~~ 106 (225)
. -...+.
T Consensus 169 ~iei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~ 248 (441)
T TIGR00390 169 EIEIDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQS 248 (441)
T ss_pred EEEEeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcC
Confidence 0 012478
Q ss_pred CEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCcc-----c
Q psy5910 107 SIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAF-----S 181 (225)
Q Consensus 107 ~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~-----~ 181 (225)
+||||||+|++..+. ...+.+.+++.+|+.||+++|+..... +...|.|+|++|||+|+| +
T Consensus 249 GIVfiDEiDKIa~~~-~~~~~DvS~eGVQ~~LLkilEGt~v~~-------------k~~~v~T~~ILFI~~GAF~~~kp~ 314 (441)
T TIGR00390 249 GIIFIDEIDKIAKKG-ESSGADVSREGVQRDLLPIVEGSTVNT-------------KYGMVKTDHILFIAAGAFQLAKPS 314 (441)
T ss_pred CEEEEEchhhhcccC-CCCCCCCCccchhccccccccCceeee-------------cceeEECCceeEEecCCcCCCChh
Confidence 999999999999765 233678999999999999999865442 146799999999999975 5
Q ss_pred cHHHHHHhhcccccccccccccc
Q psy5910 182 GIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 182 ~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
+|=|.+.=||...+.+...+.+.
T Consensus 315 DlIPEl~GR~Pi~v~L~~L~~ed 337 (441)
T TIGR00390 315 DLIPELQGRFPIRVELQALTTDD 337 (441)
T ss_pred hccHHHhCccceEEECCCCCHHH
Confidence 56677777998888877777664
No 23
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.93 E-value=1.9e-26 Score=191.87 Aligned_cols=189 Identities=42% Similarity=0.651 Sum_probs=150.2
Q ss_pred CCcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCc
Q psy5910 2 ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGY 81 (225)
Q Consensus 2 ~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~ 81 (225)
+|+++|+||+++++.+..++...|++............+.++||+||||||||++|+++|+.++.+|+.+++..+.+.+|
T Consensus 12 ~Ld~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~Gy 91 (443)
T PRK05201 12 ELDKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGY 91 (443)
T ss_pred HhccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCc
Confidence 58899999999999999999776665433333333334579999999999999999999999999999999998888889
Q ss_pred cCCcHHHHHHHHHHhc----------------------------------------------------------------
Q psy5910 82 VGDDVESIIQKLLHEC---------------------------------------------------------------- 97 (225)
Q Consensus 82 ~g~~~~~~~~~~~~~~---------------------------------------------------------------- 97 (225)
.|.+.+..++.++..+
T Consensus 92 vG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~ 171 (443)
T PRK05201 92 VGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDK 171 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCc
Confidence 9988777776666555
Q ss_pred -------c--h------------------------------------------------------------hhhh-hCCC
Q psy5910 98 -------D--Y------------------------------------------------------------DVEL-AEQS 107 (225)
Q Consensus 98 -------~--~------------------------------------------------------------~~~~-~~~~ 107 (225)
. . .+.. .+.+
T Consensus 172 ~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~G 251 (443)
T PRK05201 172 EIEIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNG 251 (443)
T ss_pred EEEEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCC
Confidence 0 0 0122 3789
Q ss_pred EEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCcc-----cc
Q psy5910 108 IIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAF-----SG 182 (225)
Q Consensus 108 vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~-----~~ 182 (225)
||||||||++..+.++ .+.+.+++.+|+.||+++|+..... +...|.|+|++|||+|+| ++
T Consensus 252 IVfiDEiDKIa~~~~~-~~~DvS~eGVQ~~LLki~EG~~v~~-------------k~~~i~T~~ILFI~~GAF~~~kp~D 317 (443)
T PRK05201 252 IVFIDEIDKIAARGGS-SGPDVSREGVQRDLLPLVEGSTVST-------------KYGMVKTDHILFIASGAFHVSKPSD 317 (443)
T ss_pred EEEEEcchhhcccCCC-CCCCCCccchhcccccccccceeee-------------cceeEECCceeEEecCCcCCCChhh
Confidence 9999999999987544 4679999999999999999865442 156799999999999974 66
Q ss_pred HHHHHHhhcccccccccccccc
Q psy5910 183 IENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 183 l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
|-|.+.-||...+.+...+.+.
T Consensus 318 lIPEl~GR~Pi~v~L~~L~~~d 339 (443)
T PRK05201 318 LIPELQGRFPIRVELDALTEED 339 (443)
T ss_pred ccHHHhCccceEEECCCCCHHH
Confidence 7788888998888887776654
No 24
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.93 E-value=8.5e-27 Score=200.42 Aligned_cols=175 Identities=23% Similarity=0.341 Sum_probs=133.5
Q ss_pred eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCC----------eEEeccCc
Q psy5910 6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVP----------IIVVDATS 75 (225)
Q Consensus 6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~----------~~~~~~~~ 75 (225)
.|+|++.+++++++.+..++.++..+..+++.. ++++|||||||||||++|+++|+.++.+ |+.+.+..
T Consensus 183 dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~-p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~e 261 (512)
T TIGR03689 183 DIGGLDSQIEQIRDAVELPFLHPELYREYDLKP-PKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPE 261 (512)
T ss_pred HcCChHHHHHHHHHHHHHHhhCHHHHHhccCCC-CcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchh
Confidence 478999999999999988777777777677654 4589999999999999999999998654 44445555
Q ss_pred ccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccc
Q psy5910 76 FTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEK 155 (225)
Q Consensus 76 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~ 155 (225)
+.. +|.|+. +..++.+|..+........++|+||||+|.+...++...+.+. ...+.+.|+..||+...
T Consensus 262 Ll~-kyvGet-e~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~-e~~il~~LL~~LDgl~~-------- 330 (512)
T TIGR03689 262 LLN-KYVGET-ERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDV-ETTVVPQLLSELDGVES-------- 330 (512)
T ss_pred hcc-cccchH-HHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchH-HHHHHHHHHHHhccccc--------
Confidence 543 577775 5567777776533323347899999999999987654322222 34567888888887431
Q ss_pred cCCCCCCceeEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910 156 KNPSQNPQVFNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN 204 (225)
Q Consensus 156 ~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~ 204 (225)
..+ +++|+|||. ++.||+|++| |||.+|.|+.|+.++
T Consensus 331 ---~~~--ViVI~ATN~-------~d~LDpALlRpGRfD~~I~~~~Pd~e~ 369 (512)
T TIGR03689 331 ---LDN--VIVIGASNR-------EDMIDPAILRPGRLDVKIRIERPDAEA 369 (512)
T ss_pred ---CCc--eEEEeccCC-------hhhCCHhhcCccccceEEEeCCCCHHH
Confidence 122 899999999 7799999999 999999999999877
No 25
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.92 E-value=5.2e-26 Score=191.76 Aligned_cols=173 Identities=24% Similarity=0.348 Sum_probs=133.8
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD 84 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~ 84 (225)
+.|+|++.+++++.+.+..++.++..+...++. +++++||+||||||||++|+++|+.++.+++.+.+..+.. .|.|.
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~-~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~-k~~ge 222 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGID-PPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ-KYLGE 222 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCC-CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH-Hhcch
Confidence 358999999999999998888877777777765 4468999999999999999999999999999998877754 57777
Q ss_pred cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccC-CCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCc
Q psy5910 85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQ 163 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~ 163 (225)
. ...++.+|..+ ....|+||||||+|.+...+.... +.+....++...|+..|++... ..+
T Consensus 223 ~-~~~lr~lf~~A----~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~-----------~~~-- 284 (398)
T PTZ00454 223 G-PRMVRDVFRLA----RENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQ-----------TTN-- 284 (398)
T ss_pred h-HHHHHHHHHHH----HhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCC-----------CCC--
Confidence 5 55667777665 456899999999999987764322 1222223344455556654321 122
Q ss_pred eeEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910 164 VFNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN 204 (225)
Q Consensus 164 ~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~ 204 (225)
+++|++||. ++.+|++++| ||+.+|.|+.|+.++
T Consensus 285 v~VI~aTN~-------~d~LDpAllR~GRfd~~I~~~~P~~~~ 320 (398)
T PTZ00454 285 VKVIMATNR-------ADTLDPALLRPGRLDRKIEFPLPDRRQ 320 (398)
T ss_pred EEEEEecCC-------chhCCHHHcCCCcccEEEEeCCcCHHH
Confidence 888999998 7799999999 999999999999876
No 26
>KOG0729|consensus
Probab=99.92 E-value=7e-26 Score=176.20 Aligned_cols=172 Identities=22% Similarity=0.292 Sum_probs=140.8
Q ss_pred eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCc
Q psy5910 6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDD 85 (225)
Q Consensus 6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~ 85 (225)
.|.|-.+.++.+++.+..++-++..+...++..|+ +||+|||||||||.+||++|+..+.-|+++-++.+.. +|+|+.
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppk-gvllygppgtgktl~aravanrtdacfirvigselvq-kyvgeg 255 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPK-GVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEG 255 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCC-ceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHH-HHhhhh
Confidence 57899999999999999888888888888886554 8999999999999999999999999999999999986 799987
Q ss_pred HHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccC-CCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910 86 VESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV 164 (225)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~ 164 (225)
..+++.+|+.+ +...-|++||||+|.+...|=..+ +.+..-++..-.|+..||++. |..+ +
T Consensus 256 -armvrelf~ma----rtkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfd-----------prgn--i 317 (435)
T KOG0729|consen 256 -ARMVRELFEMA----RTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFD-----------PRGN--I 317 (435)
T ss_pred -HHHHHHHHHHh----cccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCC-----------CCCC--e
Confidence 67888898876 455779999999999987763332 444443344444555555542 3334 8
Q ss_pred eEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910 165 FNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN 204 (225)
Q Consensus 165 ~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~ 204 (225)
-++.+||+ ++-+|+|++| |+|++++|..|+-+.
T Consensus 318 kvlmatnr-------pdtldpallrpgrldrkvef~lpdleg 352 (435)
T KOG0729|consen 318 KVLMATNR-------PDTLDPALLRPGRLDRKVEFGLPDLEG 352 (435)
T ss_pred EEEeecCC-------CCCcCHhhcCCcccccceeccCCcccc
Confidence 88999999 8899999999 999999999999876
No 27
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.92 E-value=1.2e-25 Score=204.04 Aligned_cols=172 Identities=24% Similarity=0.323 Sum_probs=142.3
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD 84 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~ 84 (225)
+.|+|++.+++.|.+.+.+++.+...+...++..+ .++||+||||||||++|+++|++++.+|+.++++++.+ +|.|+
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~-~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~-~~vGe 530 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPP-KGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILS-KWVGE 530 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCC-ceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhh-cccCc
Confidence 35799999999999999887777766666666544 58999999999999999999999999999999998875 69998
Q ss_pred cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910 85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV 164 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~ 164 (225)
. +..++.+|..+ ....++||||||+|++.+.++...+ ....+++.+.|+..|++... ..+ +
T Consensus 531 s-e~~i~~~f~~A----~~~~p~iifiDEid~l~~~r~~~~~-~~~~~~~~~~lL~~ldg~~~-----------~~~--v 591 (733)
T TIGR01243 531 S-EKAIREIFRKA----RQAAPAIIFFDEIDAIAPARGARFD-TSVTDRIVNQLLTEMDGIQE-----------LSN--V 591 (733)
T ss_pred H-HHHHHHHHHHH----HhcCCEEEEEEChhhhhccCCCCCC-ccHHHHHHHHHHHHhhcccC-----------CCC--E
Confidence 7 66788888876 5668999999999999987754322 22346688899999997431 123 9
Q ss_pred eEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910 165 FNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN 204 (225)
Q Consensus 165 ~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~ 204 (225)
++|+|||. ++.||++++| ||++.|.++.|+.+.
T Consensus 592 ~vI~aTn~-------~~~ld~allRpgRfd~~i~v~~Pd~~~ 626 (733)
T TIGR01243 592 VVIAATNR-------PDILDPALLRPGRFDRLILVPPPDEEA 626 (733)
T ss_pred EEEEeCCC-------hhhCCHhhcCCCccceEEEeCCcCHHH
Confidence 99999999 7799999998 999999999999876
No 28
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.92 E-value=3.3e-25 Score=190.68 Aligned_cols=167 Identities=22% Similarity=0.300 Sum_probs=127.2
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD 84 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~ 84 (225)
+.|+|++.+|+++.+....+.. ....+++. +++++||+||||||||++|+++|+.++.+++.++++.+.. +|.|+
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~---~~~~~gl~-~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~-~~vGe 302 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSK---QASNYGLP-TPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFG-GIVGE 302 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhH---HHHhcCCC-CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcc-cccCh
Confidence 4689999999988764321111 11223443 3468999999999999999999999999999999988764 68888
Q ss_pred cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910 85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV 164 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~ 164 (225)
. +..++.+|..+ +...||||||||+|++...+... +......++.+.|+..|++.. .. +
T Consensus 303 s-e~~l~~~f~~A----~~~~P~IL~IDEID~~~~~~~~~-~d~~~~~rvl~~lL~~l~~~~-------------~~--V 361 (489)
T CHL00195 303 S-ESRMRQMIRIA----EALSPCILWIDEIDKAFSNSESK-GDSGTTNRVLATFITWLSEKK-------------SP--V 361 (489)
T ss_pred H-HHHHHHHHHHH----HhcCCcEEEehhhhhhhccccCC-CCchHHHHHHHHHHHHHhcCC-------------Cc--e
Confidence 6 66778888765 55689999999999998754322 122334567777888887421 12 8
Q ss_pred eEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910 165 FNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN 204 (225)
Q Consensus 165 ~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~ 204 (225)
++|+|||. ++.||++++| |||..+.++.|+.++
T Consensus 362 ~vIaTTN~-------~~~Ld~allR~GRFD~~i~v~lP~~~e 396 (489)
T CHL00195 362 FVVATANN-------IDLLPLEILRKGRFDEIFFLDLPSLEE 396 (489)
T ss_pred EEEEecCC-------hhhCCHHHhCCCcCCeEEEeCCcCHHH
Confidence 99999999 7799999998 999999999999766
No 29
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.92 E-value=2.7e-25 Score=181.49 Aligned_cols=152 Identities=18% Similarity=0.230 Sum_probs=113.4
Q ss_pred eCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhh-hhhCCCEEEEcchhhh
Q psy5910 39 EKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDV-ELAEQSIIYIDEIDKI 117 (225)
Q Consensus 39 ~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~vl~iDEid~l 117 (225)
++..++||||||||||++|+++|+.++.+++.++++++.+ +|.|+. ++.++..|..+.... .+.+||||||||+|++
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~s-k~vGEs-Ek~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~ 224 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELES-ENAGEP-GKLIRQRYREAADIIKKKGKMSCLFINDLDAG 224 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhc-CcCCcH-HHHHHHHHHHHHHHhhccCCCeEEEEehhhhc
Confidence 3457889999999999999999999999999999999985 799988 888999998874322 2347999999999999
Q ss_pred cccccccCCCCCChHHHHHHHHHHHhcCCc-CccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHh--hcccc
Q psy5910 118 SKKTDVVSGKDVSGEGVQQSLLKLIEGVNL-SITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIIN--RINQE 194 (225)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~-~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~ 194 (225)
.+.++.. ......+.+...|+.+||+... ..+. .+.......++++|+|||. ++.||++++| |||+.
T Consensus 225 ~g~r~~~-~~tv~~qiV~~tLLnl~D~p~~v~l~G--~w~~~~~~~~V~VIaTTNr-------pd~LDpALlRpGRfDk~ 294 (413)
T PLN00020 225 AGRFGTT-QYTVNNQMVNGTLMNIADNPTNVSLGG--DWREKEEIPRVPIIVTGND-------FSTLYAPLIRDGRMEKF 294 (413)
T ss_pred CCCCCCC-CcchHHHHHHHHHHHHhcCCccccccc--cccccccCCCceEEEeCCC-------cccCCHhHcCCCCCCce
Confidence 9987532 2222334455789999986321 1111 0101112233899999999 8899999999 99997
Q ss_pred cccccccccc
Q psy5910 195 TNFLEKLNNN 204 (225)
Q Consensus 195 i~~~~~~~~~ 204 (225)
+. .|+.+.
T Consensus 295 i~--lPd~e~ 302 (413)
T PLN00020 295 YW--APTRED 302 (413)
T ss_pred eC--CCCHHH
Confidence 64 566654
No 30
>KOG0651|consensus
Probab=99.91 E-value=1.3e-24 Score=171.84 Aligned_cols=174 Identities=20% Similarity=0.302 Sum_probs=143.7
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD 84 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~ 84 (225)
+.+.|.-..+..+++-+..++.++......++..|. +++||||||||||.+|++++...+..++.+..+.+.+ +|.|+
T Consensus 132 ~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pk-g~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~-kyiGE 209 (388)
T KOG0651|consen 132 ENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPK-GLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVD-KYIGE 209 (388)
T ss_pred HHhCChHHHHHHHHhheEeeccCchhccccCCCCCc-eeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhh-hhccc
Confidence 356788889999999888888887777666765554 8889999999999999999999999999999999986 79998
Q ss_pred cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910 85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV 164 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~ 164 (225)
. ...++.+|..+ +...+||+|+||+|.+...+.. ....+.+.+|..|++++++...- ....++
T Consensus 210 s-aRlIRemf~yA----~~~~pciifmdeiDAigGRr~s--e~Ts~dreiqrTLMeLlnqmdgf----------d~l~rV 272 (388)
T KOG0651|consen 210 S-ARLIRDMFRYA----REVIPCIIFMDEIDAIGGRRFS--EGTSSDREIQRTLMELLNQMDGF----------DTLHRV 272 (388)
T ss_pred H-HHHHHHHHHHH----hhhCceEEeehhhhhhccEEec--cccchhHHHHHHHHHHHHhhccc----------hhcccc
Confidence 7 78899999887 5668899999999999988733 23455677899999888753211 222348
Q ss_pred eEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910 165 FNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN 204 (225)
Q Consensus 165 ~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~ 204 (225)
-+|+|+|. |+-|++|++| |+++++..|.|.+..
T Consensus 273 k~ImatNr-------pdtLdpaLlRpGRldrk~~iPlpne~~ 307 (388)
T KOG0651|consen 273 KTIMATNR-------PDTLDPALLRPGRLDRKVEIPLPNEQA 307 (388)
T ss_pred cEEEecCC-------ccccchhhcCCccccceeccCCcchhh
Confidence 89999999 8999999999 999999999998765
No 31
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=5.7e-25 Score=190.22 Aligned_cols=172 Identities=26% Similarity=0.364 Sum_probs=142.3
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD 84 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~ 84 (225)
..+.|.+++|+.+.+.+ .+++.+..+...+...|+ ++||+||||||||+||+++|.+.+.||+.++++++.+ -|+|.
T Consensus 150 ~DVAG~dEakeel~EiV-dfLk~p~ky~~lGakiPk-GvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVe-mfVGv 226 (596)
T COG0465 150 ADVAGVDEAKEELSELV-DFLKNPKKYQALGAKIPK-GVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE-MFVGV 226 (596)
T ss_pred hhhcCcHHHHHHHHHHH-HHHhCchhhHhccccccc-ceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhh-hhcCC
Confidence 35689999999999855 455666666666775554 8999999999999999999999999999999999987 48888
Q ss_pred cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccC-CCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCc
Q psy5910 85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQ 163 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~ 163 (225)
. ...++.+|.++ ++..|||+||||+|++..+|.... +.....+-+.+.|+..||+... +..
T Consensus 227 G-AsRVRdLF~qA----kk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~-------------~~g 288 (596)
T COG0465 227 G-ASRVRDLFEQA----KKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGG-------------NEG 288 (596)
T ss_pred C-cHHHHHHHHHh----hccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCC-------------CCc
Confidence 7 66788999887 677899999999999999986543 4444555588899999998652 122
Q ss_pred eeEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910 164 VFNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN 204 (225)
Q Consensus 164 ~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~ 204 (225)
++++++||+ ++-+|+|++| |||++|-.+.|+-..
T Consensus 289 viviaaTNR-------pdVlD~ALlRpgRFDRqI~V~~PDi~g 324 (596)
T COG0465 289 VIVIAATNR-------PDVLDPALLRPGRFDRQILVELPDIKG 324 (596)
T ss_pred eEEEecCCC-------cccchHhhcCCCCcceeeecCCcchhh
Confidence 999999999 8889999999 999999999998533
No 32
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.91 E-value=3.1e-25 Score=187.60 Aligned_cols=174 Identities=26% Similarity=0.359 Sum_probs=132.8
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD 84 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~ 84 (225)
+.|+|++++++.+.+.+..++.+...+..+++..+ .++||+||||||||++|+++|+.++.+++.+++..+.. .|.|.
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p-~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~-~~~g~ 208 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPP-KGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ-KFIGE 208 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCC-CceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH-hhccc
Confidence 45789999999999998877777766666676544 58999999999999999999999999999999988864 57777
Q ss_pred cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910 85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV 164 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~ 164 (225)
. ...++.+|..+ ....++||||||+|.+...+..... .....++..+.+++...... ....+ +
T Consensus 209 ~-~~~i~~~f~~a----~~~~p~IlfiDEiD~l~~~r~~~~~--~~~~~~~~~l~~lL~~ld~~--------~~~~~--v 271 (389)
T PRK03992 209 G-ARLVRELFELA----REKAPSIIFIDEIDAIAAKRTDSGT--SGDREVQRTLMQLLAEMDGF--------DPRGN--V 271 (389)
T ss_pred h-HHHHHHHHHHH----HhcCCeEEEEechhhhhcccccCCC--CccHHHHHHHHHHHHhcccc--------CCCCC--E
Confidence 5 55667777665 4457899999999999877654321 11233555555555432110 01112 8
Q ss_pred eEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910 165 FNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN 204 (225)
Q Consensus 165 ~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~ 204 (225)
++|+|||. ++.+|++++| ||+..|.++.|+.++
T Consensus 272 ~VI~aTn~-------~~~ld~allRpgRfd~~I~v~~P~~~~ 306 (389)
T PRK03992 272 KIIAATNR-------IDILDPAILRPGRFDRIIEVPLPDEEG 306 (389)
T ss_pred EEEEecCC-------hhhCCHHHcCCccCceEEEECCCCHHH
Confidence 89999999 6799999998 999999999999876
No 33
>KOG0740|consensus
Probab=99.91 E-value=1.8e-24 Score=180.33 Aligned_cols=172 Identities=24% Similarity=0.353 Sum_probs=143.8
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD 84 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~ 84 (225)
+.+.|++.+++.+.+.+.++..++....+. ..+.+++||.||||+|||+|+++||.+++..|+.++++.+.. +|.|+
T Consensus 153 ~di~gl~~~k~~l~e~vi~p~lr~d~F~gl--r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLts-K~~Ge 229 (428)
T KOG0740|consen 153 DDIAGLEDAKQSLKEAVILPLLRPDLFLGL--REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTS-KYVGE 229 (428)
T ss_pred cCCcchhhHHHHhhhhhhhcccchHhhhcc--ccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhh-hccCh
Confidence 467899999999999998888877666543 355679999999999999999999999999999999999985 79999
Q ss_pred cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910 85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV 164 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~ 164 (225)
. ++.++.+|+-+ +..+|+|+||||+|++.-+|.. .......+.+..++-.+++.... +.++ +
T Consensus 230 ~-eK~vralf~vA----r~~qPsvifidEidslls~Rs~--~e~e~srr~ktefLiq~~~~~s~---------~~dr--v 291 (428)
T KOG0740|consen 230 S-EKLVRALFKVA----RSLQPSVIFIDEIDSLLSKRSD--NEHESSRRLKTEFLLQFDGKNSA---------PDDR--V 291 (428)
T ss_pred H-HHHHHHHHHHH----HhcCCeEEEechhHHHHhhcCC--cccccchhhhhHHHhhhccccCC---------CCCe--E
Confidence 8 88999999877 6779999999999999988832 33445556777766666654322 3334 9
Q ss_pred eEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 165 FNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 165 ~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
++++|||.+| .+|+|++|||.+++.+|.|+.+.
T Consensus 292 lvigaTN~P~-------e~Dea~~Rrf~kr~yiplPd~et 324 (428)
T KOG0740|consen 292 LVIGATNRPW-------ELDEAARRRFVKRLYIPLPDYET 324 (428)
T ss_pred EEEecCCCch-------HHHHHHHHHhhceeeecCCCHHH
Confidence 9999999955 99999999999999999999877
No 34
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.91 E-value=7.6e-25 Score=190.95 Aligned_cols=172 Identities=25% Similarity=0.349 Sum_probs=131.1
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD 84 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~ 84 (225)
+.|+|++++++++.+.+.. +.+...+...+... ++++||+||||||||++|+++|+.++.+++.+++..+.+ .|.|.
T Consensus 55 ~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~-~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~-~~~g~ 131 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKI-PKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE-MFVGV 131 (495)
T ss_pred HHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCC-CCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHH-HHhcc
Confidence 3568999999999876643 44444444444433 458999999999999999999999999999999988764 46666
Q ss_pred cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccC-CCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCc
Q psy5910 85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQ 163 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~ 163 (225)
. ...++.+|..+ ....|+||||||+|.+..+++... +.......+.+.|+..||+... +.+
T Consensus 132 ~-~~~l~~~f~~a----~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~-------------~~~ 193 (495)
T TIGR01241 132 G-ASRVRDLFEQA----KKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT-------------NTG 193 (495)
T ss_pred c-HHHHHHHHHHH----HhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC-------------CCC
Confidence 5 45667777765 456789999999999998775432 2233345577788888876421 122
Q ss_pred eeEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910 164 VFNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN 204 (225)
Q Consensus 164 ~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~ 204 (225)
+++|+|||. ++.+|++++| ||++.|.++.|+.++
T Consensus 194 v~vI~aTn~-------~~~ld~al~r~gRfd~~i~i~~Pd~~~ 229 (495)
T TIGR01241 194 VIVIAATNR-------PDVLDPALLRPGRFDRQVVVDLPDIKG 229 (495)
T ss_pred eEEEEecCC-------hhhcCHHHhcCCcceEEEEcCCCCHHH
Confidence 899999999 7799999999 999999999999865
No 35
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.90 E-value=1.2e-24 Score=184.78 Aligned_cols=173 Identities=24% Similarity=0.368 Sum_probs=130.8
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD 84 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~ 84 (225)
+.|.|++.+++.+.+.+..++.++..+..+++. ++.++||+||||||||++|+++|+.++.+++.+.+..+.. .|.|.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~-~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~-k~~Ge 260 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIK-PPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ-KYLGD 260 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCC-CCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh-hhcch
Confidence 457999999999999998777776666666664 4458999999999999999999999999999999888765 57777
Q ss_pred cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccC-CCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCc
Q psy5910 85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQ 163 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~ 163 (225)
. ...++.+|..+ ....++|+||||+|.+..++.... +......+....|+..|++.. ...+
T Consensus 261 ~-~~~vr~lF~~A----~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~-----------~~~~-- 322 (438)
T PTZ00361 261 G-PKLVRELFRVA----EENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFD-----------SRGD-- 322 (438)
T ss_pred H-HHHHHHHHHHH----HhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhc-----------ccCC--
Confidence 5 45567777655 445789999999999987764322 111111223334455555421 1122
Q ss_pred eeEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910 164 VFNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN 204 (225)
Q Consensus 164 ~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~ 204 (225)
+.+|++||. ++.+|++++| ||++.|.|+.|+.++
T Consensus 323 V~VI~ATNr-------~d~LDpaLlRpGRfd~~I~~~~Pd~~~ 358 (438)
T PTZ00361 323 VKVIMATNR-------IESLDPALIRPGRIDRKIEFPNPDEKT 358 (438)
T ss_pred eEEEEecCC-------hHHhhHHhccCCeeEEEEEeCCCCHHH
Confidence 888999998 7799999998 999999999999866
No 36
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=4.3e-24 Score=170.79 Aligned_cols=189 Identities=43% Similarity=0.653 Sum_probs=156.9
Q ss_pred CCcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCc
Q psy5910 2 ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGY 81 (225)
Q Consensus 2 ~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~ 81 (225)
+||++|+||+++|+.+.-++.+.|++......+.-..-+.++|++||+|+|||.+||.+|+..+.||+.+.+.-+.+-||
T Consensus 12 eLd~yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKfTEVGY 91 (444)
T COG1220 12 ELDRYIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKFTEVGY 91 (444)
T ss_pred HHHhHhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeeeeeccc
Confidence 58999999999999999999999998877777777777889999999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHhc----------------------------------------------------------------
Q psy5910 82 VGDDVESIIQKLLHEC---------------------------------------------------------------- 97 (225)
Q Consensus 82 ~g~~~~~~~~~~~~~~---------------------------------------------------------------- 97 (225)
+|.+++.+++.+...+
T Consensus 92 VGrDVesivRDLve~av~lvke~~~~~vk~~ae~~aeeRild~Lvp~~~~~~g~~~~~~~~~~~r~~~rkkLr~GeLdd~ 171 (444)
T COG1220 92 VGRDVESIIRDLVEIAVKLVREEKIEKVKDKAEELAEERILDALVPPAKNFWGQSENKQESSATREKFRKKLREGELDDK 171 (444)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcCcccccchHHHHHHHHHHHcCCCCcc
Confidence 9999998887766544
Q ss_pred ----------------------------------------------------------------------chhhh-hhCC
Q psy5910 98 ----------------------------------------------------------------------DYDVE-LAEQ 106 (225)
Q Consensus 98 ----------------------------------------------------------------------~~~~~-~~~~ 106 (225)
...+. ..+.
T Consensus 172 eIeiev~~~~~~~~~i~~~pgme~~~~~l~~m~~~~~~~kkkkrk~~Vk~A~~~L~~eea~KLid~e~i~~eAi~~aE~~ 251 (444)
T COG1220 172 EIEIEVADKGPPGFEIMGPPGMEEMTNNLQDMFGNLGGKKKKKRKLKVKEAKKLLIEEEADKLIDQEEIKQEAIDAAEQN 251 (444)
T ss_pred EEEEEEeccCCCccccCCCCcHHHHHHHHHHHHHHhcCCCcceeeeeHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhc
Confidence 00011 2378
Q ss_pred CEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCcc-----c
Q psy5910 107 SIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAF-----S 181 (225)
Q Consensus 107 ~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~-----~ 181 (225)
+|+||||||++..+.+. ++++.+.+.+|-.||.++++...+. ..-.+.|.+++||++++| +
T Consensus 252 GIvFIDEIDKIa~~~~~-g~~dvSREGVQRDlLPlvEGstV~T-------------KyG~VkTdHILFIasGAFh~sKPS 317 (444)
T COG1220 252 GIVFIDEIDKIAKRGGS-GGPDVSREGVQRDLLPLVEGSTVST-------------KYGPVKTDHILFIASGAFHVAKPS 317 (444)
T ss_pred CeEEEehhhHHHhcCCC-CCCCcchhhhcccccccccCceeec-------------cccccccceEEEEecCceecCChh
Confidence 99999999999987653 3448899999999999999855331 144578999999999864 7
Q ss_pred cHHHHHHhhcccccccccccccc
Q psy5910 182 GIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 182 ~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
+|=|.+.=||..+++...-+.+.
T Consensus 318 DLiPELQGRfPIRVEL~~Lt~~D 340 (444)
T COG1220 318 DLIPELQGRFPIRVELDALTKED 340 (444)
T ss_pred hcChhhcCCCceEEEcccCCHHH
Confidence 88888889999988877666554
No 37
>CHL00176 ftsH cell division protein; Validated
Probab=99.88 E-value=2.3e-23 Score=184.51 Aligned_cols=172 Identities=25% Similarity=0.385 Sum_probs=127.9
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD 84 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~ 84 (225)
+.|+|.+++++++.+.+.. ++....+...+... ++++||+||||||||++|+++|+.++.|++.++++.+.+ .|.|.
T Consensus 183 ~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~-p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~-~~~g~ 259 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKI-PKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVE-MFVGV 259 (638)
T ss_pred HhccChHHHHHHHHHHHHH-HhCHHHHhhccCCC-CceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHH-Hhhhh
Confidence 4579999999999886533 44444444445443 458999999999999999999999999999999988764 46665
Q ss_pred cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccC-CCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCc
Q psy5910 85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQ 163 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~ 163 (225)
. ...++.+|..+ ....|+||||||+|.+...++... +.....+.+.+.|+..||+.. .+.+
T Consensus 260 ~-~~~vr~lF~~A----~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~-------------~~~~ 321 (638)
T CHL00176 260 G-AARVRDLFKKA----KENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFK-------------GNKG 321 (638)
T ss_pred h-HHHHHHHHHHH----hcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhcccc-------------CCCC
Confidence 4 34566677665 456889999999999987764432 222333345566666666532 1122
Q ss_pred eeEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910 164 VFNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN 204 (225)
Q Consensus 164 ~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~ 204 (225)
+++|++||. ++.+|++++| ||++.|.++.|+.++
T Consensus 322 ViVIaaTN~-------~~~LD~ALlRpGRFd~~I~v~lPd~~~ 357 (638)
T CHL00176 322 VIVIAATNR-------VDILDAALLRPGRFDRQITVSLPDREG 357 (638)
T ss_pred eeEEEecCc-------hHhhhhhhhccccCceEEEECCCCHHH
Confidence 889999999 7799999998 999999999998866
No 38
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.87 E-value=5e-23 Score=173.28 Aligned_cols=174 Identities=24% Similarity=0.315 Sum_probs=126.2
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD 84 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~ 84 (225)
+.|+|++++++.+.+.+..+..+...+..+++..+ .++||+||||||||++|+++++.++.+++.+.+..+.. .|.|.
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p-~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~-~~~g~ 199 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPP-KGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVR-KYIGE 199 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCC-ceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHH-HhhhH
Confidence 46899999999999988776666655666666444 58999999999999999999999999999998877653 46665
Q ss_pred cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910 85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV 164 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~ 164 (225)
. ...+..+|..+ ....++||||||+|.+...+..... ..+..++..+.+++...... ....++
T Consensus 200 ~-~~~i~~~f~~a----~~~~p~il~iDEiD~l~~~~~~~~~--~~~~~~~~~l~~ll~~ld~~----------~~~~~v 262 (364)
T TIGR01242 200 G-ARLVREIFELA----KEKAPSIIFIDEIDAIAAKRTDSGT--SGDREVQRTLMQLLAELDGF----------DPRGNV 262 (364)
T ss_pred H-HHHHHHHHHHH----HhcCCcEEEhhhhhhhccccccCCC--CccHHHHHHHHHHHHHhhCC----------CCCCCE
Confidence 4 34455666544 3457899999999999876543221 11223455555555432110 011128
Q ss_pred eEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910 165 FNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN 204 (225)
Q Consensus 165 ~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~ 204 (225)
.+|+|||. ++.+|++++| ||++.|.++.|+.++
T Consensus 263 ~vI~ttn~-------~~~ld~al~r~grfd~~i~v~~P~~~~ 297 (364)
T TIGR01242 263 KVIAATNR-------PDILDPALLRPGRFDRIIEVPLPDFEG 297 (364)
T ss_pred EEEEecCC-------hhhCChhhcCcccCceEEEeCCcCHHH
Confidence 89999998 6689999998 999999999998766
No 39
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.3e-21 Score=169.71 Aligned_cols=188 Identities=20% Similarity=0.261 Sum_probs=134.7
Q ss_pred CCcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccc--
Q psy5910 2 ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTE-- 78 (225)
Q Consensus 2 ~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~-- 78 (225)
.||+..+|++++|+++.+.+...... - .-++++| |+||||+|||+|+++||+.++..|++++.+.+.+
T Consensus 320 iLd~dHYGLekVKeRIlEyLAV~~l~--------~-~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEA 390 (782)
T COG0466 320 ILDKDHYGLEKVKERILEYLAVQKLT--------K-KLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEA 390 (782)
T ss_pred HhcccccCchhHHHHHHHHHHHHHHh--------c-cCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHH
Confidence 47888999999999999866222111 0 1123555 9999999999999999999999999999877654
Q ss_pred ------cCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCc-Cccc
Q psy5910 79 ------AGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNL-SITS 151 (225)
Q Consensus 79 ------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~-~~~~ 151 (225)
..|.|.-+.+.++.+-+. ...+++++|||||++..+..+. --++||++||.-.. .+.+
T Consensus 391 EIRGHRRTYIGamPGrIiQ~mkka------~~~NPv~LLDEIDKm~ss~rGD---------PaSALLEVLDPEQN~~F~D 455 (782)
T COG0466 391 EIRGHRRTYIGAMPGKIIQGMKKA------GVKNPVFLLDEIDKMGSSFRGD---------PASALLEVLDPEQNNTFSD 455 (782)
T ss_pred HhccccccccccCChHHHHHHHHh------CCcCCeEEeechhhccCCCCCC---------hHHHHHhhcCHhhcCchhh
Confidence 358998878888777543 2578899999999999775433 35799999984221 1111
Q ss_pred cccccCCCCCCceeEEecCcceeeccCc-cccHHHHHHhhcccccccccccccc--chhcccCChhHHHHccCCC
Q psy5910 152 LAEKKNPSQNPQVFNIDTTNILFIAGGA-FSGIENFIINRINQETNFLEKLNNN--YNLICETNTEDLINFGIIP 223 (225)
Q Consensus 152 ~~~~~~~~~~~~~~~i~ttn~~~i~~~~-~~~l~~al~~Rf~~~i~~~~~~~~~--~~l~~~~~~~~l~~~~~~~ 223 (225)
.. . -+-++-|+++||||+| .+.||.++++|... |......+++ ++..+++-|+.+...|+.+
T Consensus 456 hY-L--------ev~yDLS~VmFiaTANsl~tIP~PLlDRMEi-I~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~ 520 (782)
T COG0466 456 HY-L--------EVPYDLSKVMFIATANSLDTIPAPLLDRMEV-IRLSGYTEDEKLEIAKRHLIPKQLKEHGLKK 520 (782)
T ss_pred cc-c--------cCccchhheEEEeecCccccCChHHhcceee-eeecCCChHHHHHHHHHhcchHHHHHcCCCc
Confidence 11 1 1224556666666653 56799999999744 4444444433 8889999999999999874
No 40
>KOG0730|consensus
Probab=99.85 E-value=7.4e-22 Score=169.74 Aligned_cols=170 Identities=24% Similarity=0.363 Sum_probs=143.7
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD 84 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~ 84 (225)
..+.|.......++..+.+++..+......+... ++++|+|||||||||.+++++|++.+..++.+++..+.. +|.|+
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~-prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~-k~~gE 261 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKP-PRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELIS-KFPGE 261 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCC-CCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHH-hcccc
Confidence 4678899999999999999999888888888854 459999999999999999999999999999999998875 57787
Q ss_pred cHHHHHHHHHHhcchhhhhhC-CCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCc
Q psy5910 85 DVESIIQKLLHECDYDVELAE-QSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQ 163 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~-~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~ 163 (225)
. ++.++..|+.+ ...+ |+++||||+|.+.+++..... ...++...|+.+||+.. +...
T Consensus 262 t-e~~LR~~f~~a----~k~~~psii~IdEld~l~p~r~~~~~---~e~Rv~sqlltL~dg~~-----------~~~~-- 320 (693)
T KOG0730|consen 262 T-ESNLRKAFAEA----LKFQVPSIIFIDELDALCPKREGADD---VESRVVSQLLTLLDGLK-----------PDAK-- 320 (693)
T ss_pred h-HHHHHHHHHHH----hccCCCeeEeHHhHhhhCCcccccch---HHHHHHHHHHHHHhhCc-----------CcCc--
Confidence 7 77888888887 4455 999999999999998755322 45678999999999754 1122
Q ss_pred eeEEecCcceeeccCccccHHHHHHh-hcccccccccccccc
Q psy5910 164 VFNIDTTNILFIAGGAFSGIENFIIN-RINQETNFLEKLNNN 204 (225)
Q Consensus 164 ~~~i~ttn~~~i~~~~~~~l~~al~~-Rf~~~i~~~~~~~~~ 204 (225)
+++++++|. ++.||++++| |||+.+....|+...
T Consensus 321 vivl~atnr-------p~sld~alRRgRfd~ev~IgiP~~~~ 355 (693)
T KOG0730|consen 321 VIVLAATNR-------PDSLDPALRRGRFDREVEIGIPGSDG 355 (693)
T ss_pred EEEEEecCC-------ccccChhhhcCCCcceeeecCCCchh
Confidence 899999999 8899999999 999998888888655
No 41
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.85 E-value=4.8e-21 Score=138.38 Aligned_cols=129 Identities=29% Similarity=0.531 Sum_probs=99.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhC-CCEEEEcchhhhcccc
Q psy5910 43 ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAE-QSIIYIDEIDKISKKT 121 (225)
Q Consensus 43 vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~vl~iDEid~l~~~~ 121 (225)
|||+||||||||++|+.+|+.++.+++.+++..+.. .+.+.. ...+..++..+ .... ++|+||||+|.+.+..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~-~~~~~~-~~~i~~~~~~~----~~~~~~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELIS-SYAGDS-EQKIRDFFKKA----KKSAKPCVLFIDEIDKLFPKS 74 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHT-SSTTHH-HHHHHHHHHHH----HHTSTSEEEEEETGGGTSHHC
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccccccccccc-cccccc-ccccccccccc----cccccceeeeeccchhccccc
Confidence 689999999999999999999999999999998863 344443 56667777664 3334 8999999999999886
Q ss_pred cccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHH-hhcccccccc
Q psy5910 122 DVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFII-NRINQETNFL 198 (225)
Q Consensus 122 ~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~-~Rf~~~i~~~ 198 (225)
..........+.+.|+..++..... ..++++|+|+|. ++.++++++ +||+..+.++
T Consensus 75 --~~~~~~~~~~~~~~L~~~l~~~~~~------------~~~~~vI~ttn~-------~~~i~~~l~~~rf~~~i~~~ 131 (132)
T PF00004_consen 75 --QPSSSSFEQRLLNQLLSLLDNPSSK------------NSRVIVIATTNS-------PDKIDPALLRSRFDRRIEFP 131 (132)
T ss_dssp --STSSSHHHHHHHHHHHHHHHTTTTT------------SSSEEEEEEESS-------GGGSCHHHHSTTSEEEEEE-
T ss_pred --ccccccccccccceeeecccccccc------------cccceeEEeeCC-------hhhCCHhHHhCCCcEEEEcC
Confidence 1123344556788899999864321 122889999998 789999999 9999988776
No 42
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.85 E-value=2.8e-22 Score=153.97 Aligned_cols=153 Identities=25% Similarity=0.344 Sum_probs=91.8
Q ss_pred CcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCcc
Q psy5910 3 LDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYV 82 (225)
Q Consensus 3 l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~ 82 (225)
|++ ++||+++++.+.-.+.....+. .+..++|||||||+||||||+.||++++.++...++..+...
T Consensus 23 L~e-fiGQ~~l~~~l~i~i~aa~~r~---------~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~--- 89 (233)
T PF05496_consen 23 LDE-FIGQEHLKGNLKILIRAAKKRG---------EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKA--- 89 (233)
T ss_dssp CCC-S-S-HHHHHHHHHHHHHHHCTT---------S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SC---
T ss_pred HHH-ccCcHHHHhhhHHHHHHHHhcC---------CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhH---
Confidence 444 4999999998866552222111 123589999999999999999999999999998888665321
Q ss_pred CCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCcccc-----ccccC
Q psy5910 83 GDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSL-----AEKKN 157 (225)
Q Consensus 83 g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~-----~~~~~ 157 (225)
.+.. .++.. ...+.|+|||||+++.+. +|+.|+..||.+...+-.. .....
T Consensus 90 -~dl~----~il~~------l~~~~ILFIDEIHRlnk~-------------~qe~LlpamEd~~idiiiG~g~~ar~~~~ 145 (233)
T PF05496_consen 90 -GDLA----AILTN------LKEGDILFIDEIHRLNKA-------------QQEILLPAMEDGKIDIIIGKGPNARSIRI 145 (233)
T ss_dssp -HHHH----HHHHT--------TT-EEEECTCCC--HH-------------HHHHHHHHHHCSEEEEEBSSSSS-BEEEE
T ss_pred -HHHH----HHHHh------cCCCcEEEEechhhccHH-------------HHHHHHHHhccCeEEEEeccccccceeec
Confidence 1222 22222 146789999999999988 8999999999865432111 11111
Q ss_pred CCCCCceeEEecCcceeeccCccccHHHHHHhhcccc--ccccccc
Q psy5910 158 PSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQE--TNFLEKL 201 (225)
Q Consensus 158 ~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~--i~~~~~~ 201 (225)
+- +.|-+|++|.. ...+.+++++||... +.|-.++
T Consensus 146 ~l--~~FTligATTr-------~g~ls~pLrdRFgi~~~l~~Y~~~ 182 (233)
T PF05496_consen 146 NL--PPFTLIGATTR-------AGLLSSPLRDRFGIVLRLEFYSEE 182 (233)
T ss_dssp E------EEEEEESS-------GCCTSHCCCTTSSEEEE----THH
T ss_pred cC--CCceEeeeecc-------ccccchhHHhhcceecchhcCCHH
Confidence 11 22667777766 567899999999886 4444443
No 43
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.85 E-value=1.2e-21 Score=175.00 Aligned_cols=171 Identities=23% Similarity=0.345 Sum_probs=126.8
Q ss_pred eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCc
Q psy5910 6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDD 85 (225)
Q Consensus 6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~ 85 (225)
.+.|.+.+++++.+.+.. +.........+...+ ++++|+||||||||++|+++++.++.+++.+++.++.. .|.|..
T Consensus 153 di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~-~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~-~~~g~~ 229 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIP-KGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE-MFVGVG 229 (644)
T ss_pred HHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCC-CcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHH-hhhccc
Confidence 467888888888775543 222222222233233 47999999999999999999999999999999988764 466765
Q ss_pred HHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccC-CCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910 86 VESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV 164 (225)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~ 164 (225)
...++..|..+ ....|+||||||+|.+...++... +.....+.+.+.|+..||+... ... +
T Consensus 230 -~~~~~~~f~~a----~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~-----------~~~--v 291 (644)
T PRK10733 230 -ASRVRDMFEQA----KKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG-----------NEG--I 291 (644)
T ss_pred -HHHHHHHHHHH----HhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccC-----------CCC--e
Confidence 44566666664 455899999999999998775432 2333445577888888886431 122 8
Q ss_pred eEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910 165 FNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN 204 (225)
Q Consensus 165 ~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~ 204 (225)
++|+|||. ++.+|++++| |||+.+.++.|+.+.
T Consensus 292 ivIaaTN~-------p~~lD~Al~RpgRfdr~i~v~~Pd~~~ 326 (644)
T PRK10733 292 IVIAATNR-------PDVLDPALLRPGRFDRQVVVGLPDVRG 326 (644)
T ss_pred eEEEecCC-------hhhcCHHHhCCcccceEEEcCCCCHHH
Confidence 99999999 8899999999 999999999999755
No 44
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.85 E-value=1.3e-21 Score=177.87 Aligned_cols=170 Identities=28% Similarity=0.371 Sum_probs=133.7
Q ss_pred eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCc
Q psy5910 6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDD 85 (225)
Q Consensus 6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~ 85 (225)
.|+|++++++.+.+.+..+..++..+...++. ++.++||+||||||||++|+++|+.++.+++.+++..+.. .|.|..
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~-~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~-~~~g~~ 256 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIE-PPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMS-KYYGES 256 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCC-CCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhc-ccccHH
Confidence 47899999999999887776666666666664 3458999999999999999999999999999999988764 577765
Q ss_pred HHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCcee
Q psy5910 86 VESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVF 165 (225)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~ 165 (225)
...++.+|+.+ ....++||||||+|.+.++++... .....++++.|+.+|++... ...++
T Consensus 257 -~~~l~~lf~~a----~~~~p~il~iDEid~l~~~r~~~~--~~~~~~~~~~Ll~~ld~l~~-------------~~~vi 316 (733)
T TIGR01243 257 -EERLREIFKEA----EENAPSIIFIDEIDAIAPKREEVT--GEVEKRVVAQLLTLMDGLKG-------------RGRVI 316 (733)
T ss_pred -HHHHHHHHHHH----HhcCCcEEEeehhhhhcccccCCc--chHHHHHHHHHHHHhhcccc-------------CCCEE
Confidence 55677777765 445789999999999998764322 22335688899999986431 11288
Q ss_pred EEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910 166 NIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN 204 (225)
Q Consensus 166 ~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~ 204 (225)
+|++||. ++.+|+++++ ||+..+.++.|+.+.
T Consensus 317 vI~atn~-------~~~ld~al~r~gRfd~~i~i~~P~~~~ 350 (733)
T TIGR01243 317 VIGATNR-------PDALDPALRRPGRFDREIVIRVPDKRA 350 (733)
T ss_pred EEeecCC-------hhhcCHHHhCchhccEEEEeCCcCHHH
Confidence 8889998 7789999998 999999998887664
No 45
>KOG0732|consensus
Probab=99.84 E-value=8.6e-22 Score=177.84 Aligned_cols=171 Identities=23% Similarity=0.319 Sum_probs=140.5
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhC-----CCeEEeccCccccc
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIIN-----VPIIVVDATSFTEA 79 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~-----~~~~~~~~~~~~~~ 79 (225)
+.|.|++..+.+|++.+..++.+++.+..+++. |+++||++||||||||..|+++|..+. ..|+.-.+++..+
T Consensus 265 d~vggl~~~i~~LKEmVl~PLlyPE~f~~~~it-pPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~ls- 342 (1080)
T KOG0732|consen 265 DSVGGLENYINQLKEMVLLPLLYPEFFDNFNIT-PPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLS- 342 (1080)
T ss_pred cccccHHHHHHHHHHHHHhHhhhhhHhhhcccC-CCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhhc-
Confidence 567999999999999999999999999888885 456999999999999999999998882 3355555556553
Q ss_pred CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCC
Q psy5910 80 GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPS 159 (225)
Q Consensus 80 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~ 159 (225)
+|+|+. +..++.+|..+ ++.+|+|+|+||||-+.+.++.-. .-....+...|+.+|++...
T Consensus 343 kwvgEa-ERqlrllFeeA----~k~qPSIIffdeIdGlapvrSskq--Eqih~SIvSTLLaLmdGlds------------ 403 (1080)
T KOG0732|consen 343 KWVGEA-ERQLRLLFEEA----QKTQPSIIFFDEIDGLAPVRSSKQ--EQIHASIVSTLLALMDGLDS------------ 403 (1080)
T ss_pred cccCcH-HHHHHHHHHHH----hccCceEEeccccccccccccchH--HHhhhhHHHHHHHhccCCCC------------
Confidence 799987 77788899887 778999999999999998874321 11122377889999998642
Q ss_pred CCCceeEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910 160 QNPQVFNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN 204 (225)
Q Consensus 160 ~~~~~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~ 204 (225)
++++++|++||+ ++.+|+|++| ||++.+.|+.|+.+.
T Consensus 404 -RgqVvvigATnR-------pda~dpaLRRPgrfdref~f~lp~~~a 442 (1080)
T KOG0732|consen 404 -RGQVVVIGATNR-------PDAIDPALRRPGRFDREFYFPLPDVDA 442 (1080)
T ss_pred -CCceEEEcccCC-------ccccchhhcCCcccceeEeeeCCchHH
Confidence 233999999999 8899999999 999999999998766
No 46
>KOG0744|consensus
Probab=99.84 E-value=1.5e-21 Score=155.52 Aligned_cols=144 Identities=21% Similarity=0.307 Sum_probs=113.1
Q ss_pred eeCCcEEEEcCCCCcHHHHHHHHHHHh---------CCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCC--
Q psy5910 38 LEKSNILLVGPTGCGKTLMVKTLAKII---------NVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQ-- 106 (225)
Q Consensus 38 ~~~~~vLl~Gp~GtGKT~la~~ia~~~---------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-- 106 (225)
...+-+|++||||||||+||+++|+.+ ...++.+++..+-+ +|.++. ++.+..+|++....+.. .+
T Consensus 175 t~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFS-KWFsES-gKlV~kmF~kI~ELv~d-~~~l 251 (423)
T KOG0744|consen 175 TWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFS-KWFSES-GKLVAKMFQKIQELVED-RGNL 251 (423)
T ss_pred eeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHH-HHHhhh-hhHHHHHHHHHHHHHhC-CCcE
Confidence 344578899999999999999999988 34478888888764 799887 78888999887544332 33
Q ss_pred CEEEEcchhhhcccccccC--CCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHH
Q psy5910 107 SIIYIDEIDKISKKTDVVS--GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIE 184 (225)
Q Consensus 107 ~vl~iDEid~l~~~~~~~~--~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~ 184 (225)
-.++|||++++...|.... ..+.+..++.++|+..||... .+.+ +++.+|||. .+.||
T Consensus 252 VfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK-----------~~~N--vliL~TSNl-------~~siD 311 (423)
T KOG0744|consen 252 VFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLK-----------RYPN--VLILATSNL-------TDSID 311 (423)
T ss_pred EEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhc-----------cCCC--EEEEeccch-------HHHHH
Confidence 3577999999998886554 345566789999999999743 2334 999999999 78999
Q ss_pred HHHHhhcccccccccccccc
Q psy5910 185 NFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 185 ~al~~Rf~~~i~~~~~~~~~ 204 (225)
.|+.+|-|.+.+...|..+.
T Consensus 312 ~AfVDRADi~~yVG~Pt~~a 331 (423)
T KOG0744|consen 312 VAFVDRADIVFYVGPPTAEA 331 (423)
T ss_pred HHhhhHhhheeecCCccHHH
Confidence 99999999997777777665
No 47
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.9e-21 Score=172.45 Aligned_cols=142 Identities=29% Similarity=0.394 Sum_probs=114.7
Q ss_pred CCcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhC---CCeEEeccCcccc
Q psy5910 2 ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIIN---VPIIVVDATSFTE 78 (225)
Q Consensus 2 ~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~---~~~~~~~~~~~~~ 78 (225)
.|.++|+||++|++.+.+++.....+..... .|.+..||.||+|+|||.||+++|..+. ..+++++++++.+
T Consensus 488 ~L~~rViGQd~AV~avs~aIrraRaGL~dp~-----rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~E 562 (786)
T COG0542 488 RLKKRVIGQDEAVEAVSDAIRRARAGLGDPN-----RPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYME 562 (786)
T ss_pred HHhcceeChHHHHHHHHHHHHHHhcCCCCCC-----CCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHH
Confidence 4678999999999999999966665554333 4556788999999999999999999995 7799999987754
Q ss_pred -----------cCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCc
Q psy5910 79 -----------AGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNL 147 (225)
Q Consensus 79 -----------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~ 147 (225)
+||+|.+....++...+ ....+||+||||++++|+ +.+.|+++||.+..
T Consensus 563 kHsVSrLIGaPPGYVGyeeGG~LTEaVR-------r~PySViLlDEIEKAHpd-------------V~nilLQVlDdGrL 622 (786)
T COG0542 563 KHSVSRLIGAPPGYVGYEEGGQLTEAVR-------RKPYSVILLDEIEKAHPD-------------VFNLLLQVLDDGRL 622 (786)
T ss_pred HHHHHHHhCCCCCCceeccccchhHhhh-------cCCCeEEEechhhhcCHH-------------HHHHHHHHhcCCee
Confidence 68999876666666543 346789999999999999 99999999998544
Q ss_pred CccccccccCCCCCCceeEEecCcc
Q psy5910 148 SITSLAEKKNPSQNPQVFNIDTTNI 172 (225)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~i~ttn~ 172 (225)
....++.-++.| .++|+|||.
T Consensus 623 --TD~~Gr~VdFrN--tiIImTSN~ 643 (786)
T COG0542 623 --TDGQGRTVDFRN--TIIIMTSNA 643 (786)
T ss_pred --ecCCCCEEecce--eEEEEeccc
Confidence 345566666777 888888888
No 48
>KOG2004|consensus
Probab=99.84 E-value=5.9e-21 Score=165.27 Aligned_cols=192 Identities=22% Similarity=0.285 Sum_probs=135.6
Q ss_pred CCcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccc---
Q psy5910 2 ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTE--- 78 (225)
Q Consensus 2 ~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~--- 78 (225)
.||+..+|++++|+++.+.+-. ... .-.....-++|+||||+|||+++++||+.+|..|++++-+.+.+
T Consensus 408 iLdeDHYgm~dVKeRILEfiAV--~kL------rgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAe 479 (906)
T KOG2004|consen 408 ILDEDHYGMEDVKERILEFIAV--GKL------RGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAE 479 (906)
T ss_pred hhcccccchHHHHHHHHHHHHH--Hhh------cccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHh
Confidence 4788999999999999996611 111 11122223449999999999999999999999999998876543
Q ss_pred -----cCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccc
Q psy5910 79 -----AGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLA 153 (225)
Q Consensus 79 -----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~ 153 (225)
..|+|.-..++++.+-+. ...+.+++|||+|++...-++ + --.+||++||.-...
T Consensus 480 IkGHRRTYVGAMPGkiIq~LK~v------~t~NPliLiDEvDKlG~g~qG----D-----PasALLElLDPEQNa----- 539 (906)
T KOG2004|consen 480 IKGHRRTYVGAMPGKIIQCLKKV------KTENPLILIDEVDKLGSGHQG----D-----PASALLELLDPEQNA----- 539 (906)
T ss_pred hcccceeeeccCChHHHHHHHhh------CCCCceEEeehhhhhCCCCCC----C-----hHHHHHHhcChhhcc-----
Confidence 358888777777766433 247889999999999943221 1 347899999832211
Q ss_pred cccCCCCCCceeEEecCcceeeccCc-cccHHHHHHhhcccccccccccccc--chhcccCChhHHHHccCCCCC
Q psy5910 154 EKKNPSQNPQVFNIDTTNILFIAGGA-FSGIENFIINRINQETNFLEKLNNN--YNLICETNTEDLINFGIIPVL 225 (225)
Q Consensus 154 ~~~~~~~~~~~~~i~ttn~~~i~~~~-~~~l~~al~~Rf~~~i~~~~~~~~~--~~l~~~~~~~~l~~~~~~~~~ 225 (225)
...++-- -+-++-|.++||||+| .+-||+++++|... |+.+-...++ ++...++-|..+.+.|+.|++
T Consensus 540 -nFlDHYL--dVp~DLSkVLFicTAN~idtIP~pLlDRMEv-IelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~ 610 (906)
T KOG2004|consen 540 -NFLDHYL--DVPVDLSKVLFICTANVIDTIPPPLLDRMEV-IELSGYVAEEKVKIAERYLIPQALKDCGLKPEQ 610 (906)
T ss_pred -chhhhcc--ccccchhheEEEEeccccccCChhhhhhhhe-eeccCccHHHHHHHHHHhhhhHHHHHcCCCHHh
Confidence 1111111 2456677777777764 68899999999744 4444444443 788899999999999998763
No 49
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.83 E-value=9.4e-21 Score=178.28 Aligned_cols=136 Identities=21% Similarity=0.279 Sum_probs=101.8
Q ss_pred eCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCc----------cCC------------------------
Q psy5910 39 EKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGY----------VGD------------------------ 84 (225)
Q Consensus 39 ~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~----------~g~------------------------ 84 (225)
++++|||+||||||||.||+++|..++.|++.++++++.+. | .|+
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~-~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n~ 1707 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDN-KPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMNA 1707 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhc-ccccccccccccccccccccccccccccchhhhhhcch
Confidence 45699999999999999999999999999999999887642 2 110
Q ss_pred -------cHH-HHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCcccccccc
Q psy5910 85 -------DVE-SIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKK 156 (225)
Q Consensus 85 -------~~~-~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~ 156 (225)
.+. ..++.+|+.| ++..||||||||||.+...... .-..+.|+..|++....
T Consensus 1708 ~~~~m~~~e~~~rIr~lFelA----Rk~SPCIIFIDEIDaL~~~ds~--------~ltL~qLLneLDg~~~~-------- 1767 (2281)
T CHL00206 1708 LTMDMMPKIDRFYITLQFELA----KAMSPCIIWIPNIHDLNVNESN--------YLSLGLLVNSLSRDCER-------- 1767 (2281)
T ss_pred hhhhhhhhhhHHHHHHHHHHH----HHCCCeEEEEEchhhcCCCccc--------eehHHHHHHHhcccccc--------
Confidence 100 1245566665 5679999999999999976211 11367888888863211
Q ss_pred CCCCCCceeEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910 157 NPSQNPQVFNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN 204 (225)
Q Consensus 157 ~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~ 204 (225)
....+ +++|+|||+ ++.||+|++| |||+.|.++.|+..+
T Consensus 1768 ~s~~~--VIVIAATNR-------PD~LDPALLRPGRFDR~I~Ir~Pd~p~ 1808 (2281)
T CHL00206 1768 CSTRN--ILVIASTHI-------PQKVDPALIAPNKLNTCIKIRRLLIPQ 1808 (2281)
T ss_pred CCCCC--EEEEEeCCC-------cccCCHhHcCCCCCCeEEEeCCCCchh
Confidence 01123 999999999 8899999999 999999988877643
No 50
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.83 E-value=2e-21 Score=146.36 Aligned_cols=132 Identities=45% Similarity=0.635 Sum_probs=96.9
Q ss_pred eCCcEEEEcCCCCcHHHHHHHHHHHhCC----CeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcch
Q psy5910 39 EKSNILLVGPTGCGKTLMVKTLAKIINV----PIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEI 114 (225)
Q Consensus 39 ~~~~vLl~Gp~GtGKT~la~~ia~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi 114 (225)
|..++||.||+|||||.+|+++|+.+.. +++.++++.+.. +.+....+........+.+...+.+|||||||
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~----~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEi 77 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE----GDDVESSVSKLLGSPPGYVGAEEGGVVLLDEI 77 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS----HHHCSCHCHHHHHHTTCHHHHHHHTEEEEETG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc----cchHHhhhhhhhhcccceeeccchhhhhhHHH
Confidence 3457889999999999999999999985 899999988764 11112233444444445555666779999999
Q ss_pred hhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHH
Q psy5910 115 DKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFII 188 (225)
Q Consensus 115 d~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~ 188 (225)
|++.++ ...+++.+++.+|+.|+++||+..... .. -..+.++|.+||+|+|+......-.
T Consensus 78 dKa~~~--~~~~~~v~~~~V~~~LL~~le~g~~~d----------~~--g~~vd~~n~ifI~Tsn~~~~~~~~~ 137 (171)
T PF07724_consen 78 DKAHPS--NSGGADVSGEGVQNSLLQLLEGGTLTD----------SY--GRTVDTSNIIFIMTSNFGAEEIIDA 137 (171)
T ss_dssp GGCSHT--TTTCSHHHHHHHHHHHHHHHHHSEEEE----------TT--CCEEEGTTEEEEEEESSSTHHHHHC
T ss_pred hhcccc--ccccchhhHHHHHHHHHHHhcccceec----------cc--ceEEEeCCceEEEecccccchhhhh
Confidence 999986 223567778889999999999765431 11 3678999999999998866554443
No 51
>CHL00181 cbbX CbbX; Provisional
Probab=99.83 E-value=9.7e-21 Score=153.88 Aligned_cols=173 Identities=18% Similarity=0.221 Sum_probs=112.0
Q ss_pred CCcceeechhhHHhhheeeeEecc-cceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh-------CCCeEEecc
Q psy5910 2 ELDRHIIGQHETKKIVSVGVYNHY-KRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII-------NVPIIVVDA 73 (225)
Q Consensus 2 ~l~~~i~G~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~-------~~~~~~~~~ 73 (225)
.|++.++|++++|+++.+.+.... ...+...+.....+..+++|+||||||||++|+++++.+ ..+++.++.
T Consensus 20 ~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~ 99 (287)
T CHL00181 20 ILDEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR 99 (287)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH
Confidence 366788999999999887653211 111111111111223468999999999999999999876 235788887
Q ss_pred CcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccc
Q psy5910 74 TSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLA 153 (225)
Q Consensus 74 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~ 153 (225)
.++.. .|.|.... ....+++. ..++||||||++.+...+. ....+.++++.|+++|+...
T Consensus 100 ~~l~~-~~~g~~~~-~~~~~l~~-------a~ggVLfIDE~~~l~~~~~----~~~~~~e~~~~L~~~me~~~------- 159 (287)
T CHL00181 100 DDLVG-QYIGHTAP-KTKEVLKK-------AMGGVLFIDEAYYLYKPDN----ERDYGSEAIEILLQVMENQR------- 159 (287)
T ss_pred HHHHH-HHhccchH-HHHHHHHH-------ccCCEEEEEccchhccCCC----ccchHHHHHHHHHHHHhcCC-------
Confidence 77653 47776532 23444443 3678999999999865321 12234668899999998532
Q ss_pred cccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 154 EKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 154 ~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
.+ +++|.+++.--+ ..+-.+++++++||+..|.|+.++.++
T Consensus 160 ------~~--~~vI~ag~~~~~--~~~~~~np~L~sR~~~~i~F~~~t~~e 200 (287)
T CHL00181 160 ------DD--LVVIFAGYKDRM--DKFYESNPGLSSRIANHVDFPDYTPEE 200 (287)
T ss_pred ------CC--EEEEEeCCcHHH--HHHHhcCHHHHHhCCceEEcCCcCHHH
Confidence 11 556666543000 001123489999999999999999866
No 52
>KOG0741|consensus
Probab=99.82 E-value=1.8e-20 Score=157.70 Aligned_cols=143 Identities=27% Similarity=0.419 Sum_probs=117.0
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhCCC-eEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhh----CCCEEEEcch
Q psy5910 40 KSNILLVGPTGCGKTLMVKTLAKIINVP-IIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELA----EQSIIYIDEI 114 (225)
Q Consensus 40 ~~~vLl~Gp~GtGKT~la~~ia~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----~~~vl~iDEi 114 (225)
-.++|||||||||||.+||.|.+.++.. --.+|+..+.+ +|+|++ +.+++.+|+.+....+.. .=.|++|||+
T Consensus 256 VKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~-KYVGeS-E~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEi 333 (744)
T KOG0741|consen 256 VKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILN-KYVGES-EENVRKLFADAEEEQRRLGANSGLHIIIFDEI 333 (744)
T ss_pred eeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHH-Hhhccc-HHHHHHHHHhHHHHHHhhCccCCceEEEehhh
Confidence 4689999999999999999999999653 34467777664 799998 888999998885443322 2369999999
Q ss_pred hhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHh--hcc
Q psy5910 115 DKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIIN--RIN 192 (225)
Q Consensus 115 d~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~ 192 (225)
|+++.+|++..+...-.+.+.+.||.-||+... -+++.+|.-||+ .+-||+|++| ||.
T Consensus 334 DAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeq-------------LNNILVIGMTNR-------~DlIDEALLRPGRlE 393 (744)
T KOG0741|consen 334 DAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQ-------------LNNILVIGMTNR-------KDLIDEALLRPGRLE 393 (744)
T ss_pred HHHHHhcCCCCCCCCccHHHHHHHHHhcccHHh-------------hhcEEEEeccCc-------hhhHHHHhcCCCceE
Confidence 999999988776666677799999999998532 122999999999 8899999999 999
Q ss_pred cccccccccccc
Q psy5910 193 QETNFLEKLNNN 204 (225)
Q Consensus 193 ~~i~~~~~~~~~ 204 (225)
.+++...|++..
T Consensus 394 VqmEIsLPDE~g 405 (744)
T KOG0741|consen 394 VQMEISLPDEKG 405 (744)
T ss_pred EEEEEeCCCccC
Confidence 998888898866
No 53
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.82 E-value=2e-20 Score=168.59 Aligned_cols=174 Identities=22% Similarity=0.279 Sum_probs=121.5
Q ss_pred CCcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccc---
Q psy5910 2 ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTE--- 78 (225)
Q Consensus 2 ~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~--- 78 (225)
.|.++|+||+++++.|..++.....+.... ..|.+.+||+||||||||++|+++|+.++.+++.++++.+.+
T Consensus 455 ~L~~~ViGQ~~ai~~l~~~i~~~~~gl~~~-----~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~ 529 (758)
T PRK11034 455 RLKMLVFGQDKAIEALTEAIKMSRAGLGHE-----HKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHT 529 (758)
T ss_pred HhcceEeCcHHHHHHHHHHHHHHhccccCC-----CCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhccccc
Confidence 477899999999999999885443332111 134457899999999999999999999999999999877543
Q ss_pred --------cCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCcc
Q psy5910 79 --------AGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSIT 150 (225)
Q Consensus 79 --------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ 150 (225)
.+|.|......+...+ .....+|+||||+|++++. +++.|+++||+.....
T Consensus 530 ~~~LiG~~~gyvg~~~~g~L~~~v-------~~~p~sVlllDEieka~~~-------------v~~~LLq~ld~G~ltd- 588 (758)
T PRK11034 530 VSRLIGAPPGYVGFDQGGLLTDAV-------IKHPHAVLLLDEIEKAHPD-------------VFNLLLQVMDNGTLTD- 588 (758)
T ss_pred HHHHcCCCCCcccccccchHHHHH-------HhCCCcEEEeccHhhhhHH-------------HHHHHHHHHhcCeeec-
Confidence 2455543333333332 2345689999999999987 8999999999755432
Q ss_pred ccccccCCCCCCceeEEecCccee--ecc---C--c-----------cccHHHHHHhhcccccccccccccc
Q psy5910 151 SLAEKKNPSQNPQVFNIDTTNILF--IAG---G--A-----------FSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 151 ~~~~~~~~~~~~~~~~i~ttn~~~--i~~---~--~-----------~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
..++..+..+ .++|.|||.-. +.. + + ...+.|.++.|+|..+.|++.+.+.
T Consensus 589 -~~g~~vd~rn--~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~ 657 (758)
T PRK11034 589 -NNGRKADFRN--VVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDV 657 (758)
T ss_pred -CCCceecCCC--cEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHH
Confidence 2334444555 78888888531 000 0 0 0225577788888888888877765
No 54
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.82 E-value=1.4e-20 Score=152.89 Aligned_cols=173 Identities=18% Similarity=0.238 Sum_probs=114.6
Q ss_pred CCcceeechhhHHhhheeeeEecc-cceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhC-------CCeEEecc
Q psy5910 2 ELDRHIIGQHETKKIVSVGVYNHY-KRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIIN-------VPIIVVDA 73 (225)
Q Consensus 2 ~l~~~i~G~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~-------~~~~~~~~ 73 (225)
+|+..++|++++|+++.+.+.... ...+...+.....+..+++|+||||||||++|+++++.+. .+++.+++
T Consensus 19 ~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~ 98 (284)
T TIGR02880 19 QLDRELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR 98 (284)
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH
Confidence 366778999999999988553321 1111111122222445899999999999999999988772 36888888
Q ss_pred CcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccc
Q psy5910 74 TSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLA 153 (225)
Q Consensus 74 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~ 153 (225)
.++.. .|.|... .....+++. ..+++|||||++.+.+.+. ....+.++++.|++.|+...
T Consensus 99 ~~l~~-~~~g~~~-~~~~~~~~~-------a~~gvL~iDEi~~L~~~~~----~~~~~~~~~~~Ll~~le~~~------- 158 (284)
T TIGR02880 99 DDLVG-QYIGHTA-PKTKEILKR-------AMGGVLFIDEAYYLYRPDN----ERDYGQEAIEILLQVMENQR------- 158 (284)
T ss_pred HHHhH-hhcccch-HHHHHHHHH-------ccCcEEEEechhhhccCCC----ccchHHHHHHHHHHHHhcCC-------
Confidence 77754 5777663 334455544 3679999999999864321 12234568899999998532
Q ss_pred cccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 154 EKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 154 ~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
.+ +++|.+++..- ...+-.+++++++||...|.||.++.+.
T Consensus 159 ------~~--~~vI~a~~~~~--~~~~~~~np~L~sR~~~~i~fp~l~~ed 199 (284)
T TIGR02880 159 ------DD--LVVILAGYKDR--MDSFFESNPGFSSRVAHHVDFPDYSEAE 199 (284)
T ss_pred ------CC--EEEEEeCCcHH--HHHHHhhCHHHHhhCCcEEEeCCcCHHH
Confidence 12 66666654300 0001134789999999999999998765
No 55
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.82 E-value=2.8e-20 Score=169.66 Aligned_cols=187 Identities=21% Similarity=0.233 Sum_probs=121.1
Q ss_pred CCcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccc---
Q psy5910 2 ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTE--- 78 (225)
Q Consensus 2 ~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~--- 78 (225)
.|++.++||+++++.+.+.+....... ..+...+||+||||||||++|+++|+.++.+++.++++...+
T Consensus 317 ~l~~~~~G~~~~k~~i~~~~~~~~~~~--------~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~ 388 (775)
T TIGR00763 317 ILDEDHYGLKKVKERILEYLAVQKLRG--------KMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAE 388 (775)
T ss_pred HhhhhcCChHHHHHHHHHHHHHHHhhc--------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHH
Confidence 367889999999999988553221110 122346889999999999999999999999999998754421
Q ss_pred -----cCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCc-Ccccc
Q psy5910 79 -----AGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNL-SITSL 152 (225)
Q Consensus 79 -----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~-~~~~~ 152 (225)
..|.|....... ..+..+ ...++|+||||+|++.+..+.. ..+.|+++||.... .+...
T Consensus 389 i~g~~~~~~g~~~g~i~-~~l~~~-----~~~~~villDEidk~~~~~~~~---------~~~aLl~~ld~~~~~~f~d~ 453 (775)
T TIGR00763 389 IRGHRRTYVGAMPGRII-QGLKKA-----KTKNPLFLLDEIDKIGSSFRGD---------PASALLEVLDPEQNNAFSDH 453 (775)
T ss_pred HcCCCCceeCCCCchHH-HHHHHh-----CcCCCEEEEechhhcCCccCCC---------HHHHHHHhcCHHhcCccccc
Confidence 246666533333 333332 2345699999999998643211 45789999984211 11110
Q ss_pred -ccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc--chhcccCChhHHHHccC
Q psy5910 153 -AEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN--YNLICETNTEDLINFGI 221 (225)
Q Consensus 153 -~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~--~~l~~~~~~~~l~~~~~ 221 (225)
.....+..+ +++|+|+|. .+.+++++++||. .|.|+.++.+. +++..++.+..+...++
T Consensus 454 ~~~~~~d~s~--v~~I~TtN~-------~~~i~~~L~~R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l 515 (775)
T TIGR00763 454 YLDVPFDLSK--VIFIATANS-------IDTIPRPLLDRME-VIELSGYTEEEKLEIAKKYLIPKALEDHGL 515 (775)
T ss_pred cCCceeccCC--EEEEEecCC-------chhCCHHHhCCee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 011111222 666677776 5689999999995 58888888655 55555565666555554
No 56
>KOG0742|consensus
Probab=99.82 E-value=4.8e-20 Score=151.11 Aligned_cols=138 Identities=20% Similarity=0.293 Sum_probs=107.6
Q ss_pred eeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhh
Q psy5910 38 LEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKI 117 (225)
Q Consensus 38 ~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l 117 (225)
.+-++||||||||||||++|+.||...|..+-.++++++... |...-..+..+|..+. ....+-+|||||+|.+
T Consensus 382 apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl---G~qaVTkiH~lFDWak---kS~rGLllFIDEADAF 455 (630)
T KOG0742|consen 382 APFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL---GAQAVTKIHKLFDWAK---KSRRGLLLFIDEADAF 455 (630)
T ss_pred chhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc---chHHHHHHHHHHHHHh---hcccceEEEehhhHHH
Confidence 345799999999999999999999999999999999998753 4333445566666652 3457889999999999
Q ss_pred cccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhccccccc
Q psy5910 118 SKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNF 197 (225)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~ 197 (225)
...|.. ...++....+|..+|-... .+...++++.+||. +.++|.|+.+|||..++|
T Consensus 456 LceRnk----tymSEaqRsaLNAlLfRTG------------dqSrdivLvlAtNr-------pgdlDsAV~DRide~veF 512 (630)
T KOG0742|consen 456 LCERNK----TYMSEAQRSALNALLFRTG------------DQSRDIVLVLATNR-------PGDLDSAVNDRIDEVVEF 512 (630)
T ss_pred HHHhch----hhhcHHHHHHHHHHHHHhc------------ccccceEEEeccCC-------ccchhHHHHhhhhheeec
Confidence 888743 3344556666666664221 12223899999999 999999999999999999
Q ss_pred ccccccc
Q psy5910 198 LEKLNNN 204 (225)
Q Consensus 198 ~~~~~~~ 204 (225)
|.|.+|+
T Consensus 513 pLPGeEE 519 (630)
T KOG0742|consen 513 PLPGEEE 519 (630)
T ss_pred CCCChHH
Confidence 9999987
No 57
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.81 E-value=4.2e-20 Score=148.84 Aligned_cols=168 Identities=15% Similarity=0.181 Sum_probs=107.7
Q ss_pred eeechhhHHhhheeeeEecccc-eEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh-------CCCeEEeccCccc
Q psy5910 6 HIIGQHETKKIVSVGVYNHYKR-LFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII-------NVPIIVVDATSFT 77 (225)
Q Consensus 6 ~i~G~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~-------~~~~~~~~~~~~~ 77 (225)
.++|++++|++|.+.+.+.... .+...+........+++|+||||||||++|+++|+.+ ..+++.+++.++.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~ 86 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLV 86 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhh
Confidence 3799999999998755332111 1111122222334689999999999999999999875 2357777777765
Q ss_pred ccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccC
Q psy5910 78 EAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKN 157 (225)
Q Consensus 78 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~ 157 (225)
. .|.|+. ......+++.+ .++||||||++.+.... ......+.++.|++.|+....
T Consensus 87 ~-~~~g~~-~~~~~~~~~~a-------~~~VL~IDE~~~L~~~~-----~~~~~~~~i~~Ll~~~e~~~~---------- 142 (261)
T TIGR02881 87 G-EYIGHT-AQKTREVIKKA-------LGGVLFIDEAYSLARGG-----EKDFGKEAIDTLVKGMEDNRN---------- 142 (261)
T ss_pred h-hhccch-HHHHHHHHHhc-------cCCEEEEechhhhccCC-----ccchHHHHHHHHHHHHhccCC----------
Confidence 4 577765 34445555543 57899999999997421 112234577888888885321
Q ss_pred CCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 158 PSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 158 ~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
. +++|.++..-- ...+..+++++++||...+.|+.++.++
T Consensus 143 ---~--~~vila~~~~~--~~~~~~~~p~L~sRf~~~i~f~~~~~~e 182 (261)
T TIGR02881 143 ---E--FVLILAGYSDE--MDYFLSLNPGLRSRFPISIDFPDYTVEE 182 (261)
T ss_pred ---C--EEEEecCCcch--hHHHHhcChHHHhccceEEEECCCCHHH
Confidence 1 44444432200 0012246789999998889999888765
No 58
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.80 E-value=4.5e-20 Score=144.87 Aligned_cols=152 Identities=24% Similarity=0.347 Sum_probs=111.6
Q ss_pred eechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCcH
Q psy5910 7 IIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDV 86 (225)
Q Consensus 7 i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~~ 86 (225)
.+||+++|++|.-.+.....+...+ .|+||+||||.||||||..||+++|..+...++..+..+ .+.
T Consensus 28 fiGQ~~vk~~L~ifI~AAk~r~e~l---------DHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~----gDl 94 (332)
T COG2255 28 FIGQEKVKEQLQIFIKAAKKRGEAL---------DHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKP----GDL 94 (332)
T ss_pred hcChHHHHHHHHHHHHHHHhcCCCc---------CeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccCh----hhH
Confidence 4999999999988776555544333 499999999999999999999999999988888777532 122
Q ss_pred HHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCc-----cccccccCCCCC
Q psy5910 87 ESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSI-----TSLAEKKNPSQN 161 (225)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~-----~~~~~~~~~~~~ 161 (225)
...++.+ ..+-|+|||||+++.+. +...|+.+||.+...+ +.......+-..
T Consensus 95 aaiLt~L----------e~~DVLFIDEIHrl~~~-------------vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 95 AAILTNL----------EEGDVLFIDEIHRLSPA-------------VEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred HHHHhcC----------CcCCeEEEehhhhcChh-------------HHHHhhhhhhheeEEEEEccCCccceEeccCCC
Confidence 3333322 46789999999999988 7889999999765543 222222222233
Q ss_pred CceeEEecCcceeeccCccccHHHHHHhhcccc--ccccccccc
Q psy5910 162 PQVFNIDTTNILFIAGGAFSGIENFIINRINQE--TNFLEKLNN 203 (225)
Q Consensus 162 ~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~--i~~~~~~~~ 203 (225)
|-+|++|-+ .-.+...+++||... ++|-.+.+-
T Consensus 152 --FTLIGATTr-------~G~lt~PLrdRFGi~~rlefY~~~eL 186 (332)
T COG2255 152 --FTLIGATTR-------AGMLTNPLRDRFGIIQRLEFYTVEEL 186 (332)
T ss_pred --eeEeeeccc-------cccccchhHHhcCCeeeeecCCHHHH
Confidence 777777766 567889999999887 666655543
No 59
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.80 E-value=1.8e-19 Score=163.60 Aligned_cols=174 Identities=23% Similarity=0.301 Sum_probs=123.5
Q ss_pred CCcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccc---
Q psy5910 2 ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTE--- 78 (225)
Q Consensus 2 ~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~--- 78 (225)
.|.++|+||+++++.+..++.....+.... ..|...+||+||||||||++|+++|+.++.+++.++++.+.+
T Consensus 451 ~l~~~v~GQ~~ai~~l~~~i~~~~~g~~~~-----~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~ 525 (731)
T TIGR02639 451 NLKAKIFGQDEAIDSLVSSIKRSRAGLGNP-----NKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHT 525 (731)
T ss_pred HHhcceeCcHHHHHHHHHHHHHHhcCCCCC-----CCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhccc
Confidence 468899999999999988774332221111 123345789999999999999999999999999999876532
Q ss_pred --------cCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCcc
Q psy5910 79 --------AGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSIT 150 (225)
Q Consensus 79 --------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ 150 (225)
.+|.|.+....+...+ +....+|++|||+|++.+. +++.|+++||+...+
T Consensus 526 ~~~lig~~~gyvg~~~~~~l~~~~-------~~~p~~VvllDEieka~~~-------------~~~~Ll~~ld~g~~~-- 583 (731)
T TIGR02639 526 VSRLIGAPPGYVGFEQGGLLTEAV-------RKHPHCVLLLDEIEKAHPD-------------IYNILLQVMDYATLT-- 583 (731)
T ss_pred HHHHhcCCCCCcccchhhHHHHHH-------HhCCCeEEEEechhhcCHH-------------HHHHHHHhhccCeee--
Confidence 4566665444444333 2346789999999999987 899999999975543
Q ss_pred ccccccCCCCCCceeEEecCccee--ecc------C-c---------cccHHHHHHhhcccccccccccccc
Q psy5910 151 SLAEKKNPSQNPQVFNIDTTNILF--IAG------G-A---------FSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 151 ~~~~~~~~~~~~~~~~i~ttn~~~--i~~------~-~---------~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
...++..+..+ .++|+|||... +.. . . ...+.|.++.||+..+.|.+-+.+.
T Consensus 584 d~~g~~vd~~~--~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~ 653 (731)
T TIGR02639 584 DNNGRKADFRN--VILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEV 653 (731)
T ss_pred cCCCcccCCCC--CEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHH
Confidence 33455555566 88899998742 110 0 0 0125677888999888888888766
No 60
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.79 E-value=1.9e-19 Score=149.58 Aligned_cols=169 Identities=21% Similarity=0.355 Sum_probs=116.3
Q ss_pred CCcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcc-cccC
Q psy5910 2 ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSF-TEAG 80 (225)
Q Consensus 2 ~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~-~~~~ 80 (225)
.+...++|+++++..+..++ ...+++||.||||||||++|+++|+.++.+++.+.|... ....
T Consensus 21 ~~~~~~~g~~~~~~~~l~a~----------------~~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d 84 (329)
T COG0714 21 ELEKVVVGDEEVIELALLAL----------------LAGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSD 84 (329)
T ss_pred hcCCeeeccHHHHHHHHHHH----------------HcCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHH
Confidence 35667889999998888877 666899999999999999999999999999999999643 2222
Q ss_pred ccCCcHHHHH---HHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccC
Q psy5910 81 YVGDDVESII---QKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKN 157 (225)
Q Consensus 81 ~~g~~~~~~~---~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~ 157 (225)
..|....... ...+....+.+-....+++|+|||++..+. +|+.|+.+|++....++.... ..
T Consensus 85 ~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p~-------------~q~aLl~~l~e~~vtv~~~~~-~~ 150 (329)
T COG0714 85 LLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPPE-------------VQNALLEALEERQVTVPGLTT-IR 150 (329)
T ss_pred hcCchhHhhhhccCCeEEEecCCcccccceEEEEeccccCCHH-------------HHHHHHHHHhCcEEEECCcCC-cC
Confidence 3333211111 111111111111111259999999999988 899999999987766655442 21
Q ss_pred CCCCCceeEEecCcceeeccCccccHHHHHHhhcccc--cccccccccc
Q psy5910 158 PSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQE--TNFLEKLNNN 204 (225)
Q Consensus 158 ~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~--i~~~~~~~~~ 204 (225)
.... +++++|+|.+..... ..+++|+++||... ++||.+..+.
T Consensus 151 ~~~~--f~viaT~Np~e~~g~--~~l~eA~ldRf~~~~~v~yp~~~~e~ 195 (329)
T COG0714 151 LPPP--FIVIATQNPGEYEGT--YPLPEALLDRFLLRIYVDYPDSEEEE 195 (329)
T ss_pred CCCC--CEEEEccCccccCCC--cCCCHHHHhhEEEEEecCCCCchHHH
Confidence 2223 899999996443332 37899999999555 7777555443
No 61
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.78 E-value=5.6e-19 Score=160.22 Aligned_cols=187 Identities=17% Similarity=0.228 Sum_probs=125.5
Q ss_pred CCcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccc---
Q psy5910 2 ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTE--- 78 (225)
Q Consensus 2 ~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~--- 78 (225)
.|++.++|++++|+.+.+.+....... ..+...++|+||||||||++++.+|+.++.+++.++.+...+
T Consensus 319 ~l~~~~~g~~~vK~~i~~~l~~~~~~~--------~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~ 390 (784)
T PRK10787 319 ILDTDHYGLERVKDRILEYLAVQSRVN--------KIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAE 390 (784)
T ss_pred HhhhhccCHHHHHHHHHHHHHHHHhcc--------cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHH
Confidence 478889999999999987663222110 022346779999999999999999999999999988765432
Q ss_pred -----cCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCc-Ccccc
Q psy5910 79 -----AGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNL-SITSL 152 (225)
Q Consensus 79 -----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~-~~~~~ 152 (225)
..|.|.........+ ..+ ...++|++|||+|++....... .+++|+++||.... .+...
T Consensus 391 i~g~~~~~~g~~~G~~~~~l-~~~-----~~~~~villDEidk~~~~~~g~---------~~~aLlevld~~~~~~~~d~ 455 (784)
T PRK10787 391 IRGHRRTYIGSMPGKLIQKM-AKV-----GVKNPLFLLDEIDKMSSDMRGD---------PASALLEVLDPEQNVAFSDH 455 (784)
T ss_pred hccchhccCCCCCcHHHHHH-Hhc-----CCCCCEEEEEChhhcccccCCC---------HHHHHHHHhccccEEEEecc
Confidence 135555433333322 221 1356799999999998763211 57899999984221 11100
Q ss_pred ccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc--chhcccCChhHHHHccC
Q psy5910 153 AEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN--YNLICETNTEDLINFGI 221 (225)
Q Consensus 153 ~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~--~~l~~~~~~~~l~~~~~ 221 (225)
. - -+.+..++++||||+|...|++++++||. .|.|..++.++ ++...++.++.+.+.|+
T Consensus 456 ~-------~--~~~~dls~v~~i~TaN~~~i~~aLl~R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l 516 (784)
T PRK10787 456 Y-------L--EVDYDLSDVMFVATSNSMNIPAPLLDRME-VIRLSGYTEDEKLNIAKRHLLPKQIERNAL 516 (784)
T ss_pred c-------c--cccccCCceEEEEcCCCCCCCHHHhccee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCC
Confidence 0 0 12345677777777766689999999995 46777777665 77777787777766554
No 62
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.76 E-value=4.2e-19 Score=144.64 Aligned_cols=156 Identities=19% Similarity=0.246 Sum_probs=107.8
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccc-cCccCCcHHHH--HH--HHHHhcchhhhhhCCCEEEEcch
Q psy5910 40 KSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTE-AGYVGDDVESI--IQ--KLLHECDYDVELAEQSIIYIDEI 114 (225)
Q Consensus 40 ~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~-~~~~g~~~~~~--~~--~~~~~~~~~~~~~~~~vl~iDEi 114 (225)
.+++||.||||||||++++.+|+.++.+++.+++..... ..+.|...... -. ..|.......+...+.++++||+
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~illlDEi 143 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNVALCFDEY 143 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCeEEEechh
Confidence 468999999999999999999999999999999865533 22455431100 00 01111111122357788999999
Q ss_pred hhhcccccccCCCCCChHHHHHHHHHHHh-cCCcCccccccccCCCCCCceeEEecCcceeecc--C---ccccHHHHHH
Q psy5910 115 DKISKKTDVVSGKDVSGEGVQQSLLKLIE-GVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAG--G---AFSGIENFII 188 (225)
Q Consensus 115 d~l~~~~~~~~~~~~~~~~~~~~Ll~~l~-~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~--~---~~~~l~~al~ 188 (225)
|.+.++ ++..|..+|| +....++.......++.. |++|+|.|.+=..+ + -...+++|++
T Consensus 144 n~a~p~-------------~~~~L~~lLE~~~~l~i~~~~~~i~~hp~--FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~l 208 (327)
T TIGR01650 144 DAGRPD-------------VMFVIQRVLEAGGKLTLLDQNRVIRAHPA--FRLFATANTIGLGDTTGLYHGTQQINQAQM 208 (327)
T ss_pred hccCHH-------------HHHHHHHHhccCCeEEECCCceEecCCCC--eEEEEeeCCCCcCCCCcceeeeecCCHHHH
Confidence 999887 8999999998 445555555555556666 99999999842111 0 0236899999
Q ss_pred hhcccc--ccccccccccchhccc
Q psy5910 189 NRINQE--TNFLEKLNNNYNLICE 210 (225)
Q Consensus 189 ~Rf~~~--i~~~~~~~~~~~l~~~ 210 (225)
+||... ++|+.++.|.+++.+.
T Consensus 209 DRF~i~~~~~Yp~~e~E~~Il~~~ 232 (327)
T TIGR01650 209 DRWSIVTTLNYLEHDNEAAIVLAK 232 (327)
T ss_pred hheeeEeeCCCCCHHHHHHHHHhh
Confidence 999754 8888888886555543
No 63
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.76 E-value=1.7e-18 Score=141.98 Aligned_cols=105 Identities=24% Similarity=0.400 Sum_probs=80.9
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhccc
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKK 120 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~ 120 (225)
.+++|||||||||||+|+.||...+.+|..+++.... .+-++.+++++.......+..|||+|||+++...
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~g---------vkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~ 119 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSG---------VKDLREIIEEARKNRLLGRRTILFLDEIHRFNKA 119 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhhCCceEEecccccc---------HHHHHHHHHHHHHHHhcCCceEEEEehhhhcChh
Confidence 5889999999999999999999999999999885532 2335566665533323346799999999999977
Q ss_pred ccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecC--cceeeccCccccHHHHHHhhc
Q psy5910 121 TDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTT--NILFIAGGAFSGIENFIINRI 191 (225)
Q Consensus 121 ~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~tt--n~~~i~~~~~~~l~~al~~Rf 191 (225)
.|..|+..+|... +++|++| |. +-.+.+|+++|.
T Consensus 120 -------------QQD~lLp~vE~G~-----------------iilIGATTENP-------sF~ln~ALlSR~ 155 (436)
T COG2256 120 -------------QQDALLPHVENGT-----------------IILIGATTENP-------SFELNPALLSRA 155 (436)
T ss_pred -------------hhhhhhhhhcCCe-----------------EEEEeccCCCC-------CeeecHHHhhhh
Confidence 7999999999754 5555544 44 237999999985
No 64
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.74 E-value=1.2e-17 Score=134.51 Aligned_cols=155 Identities=17% Similarity=0.263 Sum_probs=98.5
Q ss_pred eCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccc-cC----ccCCcHHHHHHHHHH--------------hcch
Q psy5910 39 EKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTE-AG----YVGDDVESIIQKLLH--------------ECDY 99 (225)
Q Consensus 39 ~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~-~~----~~g~~~~~~~~~~~~--------------~~~~ 99 (225)
...++||+||||||||++|+++|+.++.+++.+++..-.. .. |.+............ ....
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 99 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRL 99 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchH
Confidence 3468999999999999999999999999999998854211 11 221111111111100 0001
Q ss_pred hhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccc---cCCCCCCceeEEecCcceeec
Q psy5910 100 DVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEK---KNPSQNPQVFNIDTTNILFIA 176 (225)
Q Consensus 100 ~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~---~~~~~~~~~~~i~ttn~~~i~ 176 (225)
..+...+++++|||++++.+. +++.|+.+|++....++..... ...+.+ +.+|+|+|..--.
T Consensus 100 ~~A~~~g~~lllDEi~r~~~~-------------~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~--frvIaTsN~~~~~ 164 (262)
T TIGR02640 100 TLAVREGFTLVYDEFTRSKPE-------------TNNVLLSVFEEGVLELPGKRGTSRYVDVHPE--FRVIFTSNPVEYA 164 (262)
T ss_pred HHHHHcCCEEEEcchhhCCHH-------------HHHHHHHHhcCCeEEccCCCCCCceEecCCC--CEEEEeeCCcccc
Confidence 112347789999999999877 8999999999766555442211 112233 8899999973111
Q ss_pred cCccccHHHHHHhhcccc-ccccccccccchhccc
Q psy5910 177 GGAFSGIENFIINRINQE-TNFLEKLNNNYNLICE 210 (225)
Q Consensus 177 ~~~~~~l~~al~~Rf~~~-i~~~~~~~~~~~l~~~ 210 (225)
+ ...+++++++||... +.||.++.+.+++.++
T Consensus 165 -g-~~~l~~aL~~R~~~i~i~~P~~~~e~~Il~~~ 197 (262)
T TIGR02640 165 -G-VHETQDALLDRLITIFMDYPDIDTETAILRAK 197 (262)
T ss_pred -c-eecccHHHHhhcEEEECCCCCHHHHHHHHHHh
Confidence 1 125699999998554 7776665554555544
No 65
>KOG0743|consensus
Probab=99.74 E-value=1.6e-18 Score=144.20 Aligned_cols=166 Identities=19% Similarity=0.212 Sum_probs=121.9
Q ss_pred eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCc
Q psy5910 6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDD 85 (225)
Q Consensus 6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~ 85 (225)
.++-..+.|+.|.+.+..+.++..-++..+.++ +++.|||||||||||++..|+|++++..++.++.+.... +
T Consensus 202 TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkaw-KRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~------n 274 (457)
T KOG0743|consen 202 TLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAW-KRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL------D 274 (457)
T ss_pred ccccChhHHHHHHHHHHHHHhcchHHHhcCcch-hccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC------c
Confidence 345567788888888877777777777777644 569999999999999999999999999999998876643 2
Q ss_pred HHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCC--C---CChHHHHHHHHHHHhcCCcCccccccccCCCC
Q psy5910 86 VESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGK--D---VSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQ 160 (225)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~--~---~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~ 160 (225)
.. ++.++... ...+||+|.+||....-++..... . ....-+...||.++|+.-.... +
T Consensus 275 -~d-Lr~LL~~t------~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg---------~ 337 (457)
T KOG0743|consen 275 -SD-LRHLLLAT------PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCG---------D 337 (457)
T ss_pred -HH-HHHHHHhC------CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCC---------C
Confidence 22 55555443 578999999999886543322210 0 1122367789999998643311 1
Q ss_pred CCceeEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910 161 NPQVFNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN 204 (225)
Q Consensus 161 ~~~~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~ 204 (225)
. -++|.|||. .+.||||++| |.|.+|.+.-...++
T Consensus 338 E--RIivFTTNh-------~EkLDPALlRpGRmDmhI~mgyCtf~~ 374 (457)
T KOG0743|consen 338 E--RIIVFTTNH-------KEKLDPALLRPGRMDMHIYMGYCTFEA 374 (457)
T ss_pred c--eEEEEecCC-------hhhcCHhhcCCCcceeEEEcCCCCHHH
Confidence 1 578888888 8999999999 999998877776665
No 66
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.72 E-value=1.1e-17 Score=153.64 Aligned_cols=142 Identities=26% Similarity=0.373 Sum_probs=96.7
Q ss_pred CCcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCccc-
Q psy5910 2 ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFT- 77 (225)
Q Consensus 2 ~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~- 77 (225)
.|.+.|+||+++++.+..++.....+.... ..|...+||+||||||||++|+++|+.+ ..+++.++++.+.
T Consensus 506 ~L~~~v~GQ~~ai~~l~~~i~~~~~gl~~~-----~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~ 580 (821)
T CHL00095 506 TLHKRIIGQDEAVVAVSKAIRRARVGLKNP-----NRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYME 580 (821)
T ss_pred HhcCcCcChHHHHHHHHHHHHHHhhcccCC-----CCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccc
Confidence 478999999999999998885443322111 1233457899999999999999999988 3568888876552
Q ss_pred ----------ccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCc
Q psy5910 78 ----------EAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNL 147 (225)
Q Consensus 78 ----------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~ 147 (225)
.++|.|.+....+.... +....+|++|||+|++.+. +++.|+++||.+..
T Consensus 581 ~~~~~~l~g~~~gyvg~~~~~~l~~~~-------~~~p~~VvllDeieka~~~-------------v~~~Llq~le~g~~ 640 (821)
T CHL00095 581 KHTVSKLIGSPPGYVGYNEGGQLTEAV-------RKKPYTVVLFDEIEKAHPD-------------IFNLLLQILDDGRL 640 (821)
T ss_pred cccHHHhcCCCCcccCcCccchHHHHH-------HhCCCeEEEECChhhCCHH-------------HHHHHHHHhccCce
Confidence 23566654333333332 2345689999999999988 89999999997554
Q ss_pred CccccccccCCCCCCceeEEecCcc
Q psy5910 148 SITSLAEKKNPSQNPQVFNIDTTNI 172 (225)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~i~ttn~ 172 (225)
+.. .++..+..+ .++|.|||.
T Consensus 641 ~d~--~g~~v~~~~--~i~I~Tsn~ 661 (821)
T CHL00095 641 TDS--KGRTIDFKN--TLIIMTSNL 661 (821)
T ss_pred ecC--CCcEEecCc--eEEEEeCCc
Confidence 422 222223333 555555555
No 67
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.72 E-value=2.7e-17 Score=136.77 Aligned_cols=157 Identities=22% Similarity=0.285 Sum_probs=101.7
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD 84 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~ 84 (225)
+.++||++.++.+...+...... ..+.++++|+||||||||++|+++|+.++..+...++..+..
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~---------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~------ 89 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKR---------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK------ 89 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhc---------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC------
Confidence 34699999999987766322111 123458999999999999999999999998877766554321
Q ss_pred cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCc--ccccc-ccCCCCC
Q psy5910 85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSI--TSLAE-KKNPSQN 161 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~--~~~~~-~~~~~~~ 161 (225)
...+..++.. ...+.++||||++.+... .++.|...|+.....+ ..... ......-
T Consensus 90 --~~~l~~~l~~------l~~~~vl~IDEi~~l~~~-------------~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l 148 (328)
T PRK00080 90 --PGDLAAILTN------LEEGDVLFIDEIHRLSPV-------------VEEILYPAMEDFRLDIMIGKGPAARSIRLDL 148 (328)
T ss_pred --hHHHHHHHHh------cccCCEEEEecHhhcchH-------------HHHHHHHHHHhcceeeeeccCccccceeecC
Confidence 1112223222 146789999999999865 5667778887543211 00000 0000011
Q ss_pred CceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 162 PQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 162 ~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
+.+++|++||. ...+++++++||...+.++.++.+.
T Consensus 149 ~~~~li~at~~-------~~~l~~~L~sRf~~~~~l~~~~~~e 184 (328)
T PRK00080 149 PPFTLIGATTR-------AGLLTSPLRDRFGIVQRLEFYTVEE 184 (328)
T ss_pred CCceEEeecCC-------cccCCHHHHHhcCeeeecCCCCHHH
Confidence 22666777766 5578899999998777777777654
No 68
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.71 E-value=1.3e-17 Score=125.34 Aligned_cols=145 Identities=22% Similarity=0.355 Sum_probs=94.4
Q ss_pred eechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccCccC
Q psy5910 7 IIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAGYVG 83 (225)
Q Consensus 7 i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~~~g 83 (225)
|+|.+.+++.+.+.+... .....+|||+|++||||+.+|++|++.. +.||+.++|..+..
T Consensus 1 liG~s~~m~~~~~~~~~~------------a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~----- 63 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRA------------ASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPE----- 63 (168)
T ss_dssp SS--SHHHHHHHHHHHHH------------TTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-H-----
T ss_pred CEeCCHHHHHHHHHHHHH------------hCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhc-----
Confidence 467777777776655211 1334699999999999999999999977 47899999988743
Q ss_pred CcHHHHHHHHHHhc-----------chhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCcccc
Q psy5910 84 DDVESIIQKLLHEC-----------DYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSL 152 (225)
Q Consensus 84 ~~~~~~~~~~~~~~-----------~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~ 152 (225)
+..-..+|-.. .+.+..+.+++||||||+.+.+. +|..|+++|+.......
T Consensus 64 ---~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~~-------------~Q~~Ll~~l~~~~~~~~-- 125 (168)
T PF00158_consen 64 ---ELLESELFGHEKGAFTGARSDKKGLLEQANGGTLFLDEIEDLPPE-------------LQAKLLRVLEEGKFTRL-- 125 (168)
T ss_dssp ---HHHHHHHHEBCSSSSTTTSSEBEHHHHHTTTSEEEEETGGGS-HH-------------HHHHHHHHHHHSEEECC--
T ss_pred ---chhhhhhhccccccccccccccCCceeeccceEEeecchhhhHHH-------------HHHHHHHHHhhchhccc--
Confidence 22223344221 24566779999999999999988 89999999986432211
Q ss_pred ccccCCCCCCceeEEecCcceeeccCccccHHHHHHh-hccccccc
Q psy5910 153 AEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIIN-RINQETNF 197 (225)
Q Consensus 153 ~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~-Rf~~~i~~ 197 (225)
+...... .++.+|++|+. ++.+.+.. +|...+.|
T Consensus 126 g~~~~~~--~~~RiI~st~~---------~l~~~v~~g~fr~dLy~ 160 (168)
T PF00158_consen 126 GSDKPVP--VDVRIIASTSK---------DLEELVEQGRFREDLYY 160 (168)
T ss_dssp TSSSEEE----EEEEEEESS----------HHHHHHTTSS-HHHHH
T ss_pred ccccccc--ccceEEeecCc---------CHHHHHHcCCChHHHHH
Confidence 1111011 12888888887 88888887 67554443
No 69
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.71 E-value=2.9e-17 Score=149.26 Aligned_cols=156 Identities=23% Similarity=0.251 Sum_probs=109.5
Q ss_pred eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh----------CCCeEEeccCc
Q psy5910 6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII----------NVPIIVVDATS 75 (225)
Q Consensus 6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~----------~~~~~~~~~~~ 75 (225)
.++|+++.++.+.+.+.. ....+++|+||||||||++++.+|+.+ +..++.++++.
T Consensus 183 ~~igr~~ei~~~~~~L~~--------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~ 248 (731)
T TIGR02639 183 PLIGREDELERTIQVLCR--------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGS 248 (731)
T ss_pred cccCcHHHHHHHHHHHhc--------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHH
Confidence 568999999888765511 234589999999999999999999987 67788888776
Q ss_pred ccc-cCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCcccccc
Q psy5910 76 FTE-AGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAE 154 (225)
Q Consensus 76 ~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~ 154 (225)
+.. .+|.|+- +..++.+++.+ ....++||||||++.+........ ....+++.|...|+...
T Consensus 249 l~a~~~~~g~~-e~~l~~i~~~~----~~~~~~ILfiDEih~l~~~g~~~~----~~~~~~~~L~~~l~~g~-------- 311 (731)
T TIGR02639 249 LLAGTKYRGDF-EERLKAVVSEI----EKEPNAILFIDEIHTIVGAGATSG----GSMDASNLLKPALSSGK-------- 311 (731)
T ss_pred HhhhccccchH-HHHHHHHHHHH----hccCCeEEEEecHHHHhccCCCCC----ccHHHHHHHHHHHhCCC--------
Confidence 643 3466643 66677777664 234588999999999986642111 11236677777776432
Q ss_pred ccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 155 KKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 155 ~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
+.+|++|+..= ...+-..|+++.|||. .|.++.|+.++
T Consensus 312 ---------i~~IgaTt~~e--~~~~~~~d~al~rRf~-~i~v~~p~~~~ 349 (731)
T TIGR02639 312 ---------LRCIGSTTYEE--YKNHFEKDRALSRRFQ-KIDVGEPSIEE 349 (731)
T ss_pred ---------eEEEEecCHHH--HHHHhhhhHHHHHhCc-eEEeCCCCHHH
Confidence 77788877500 0001257999999997 57888887765
No 70
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.71 E-value=3.2e-17 Score=135.03 Aligned_cols=154 Identities=20% Similarity=0.284 Sum_probs=100.2
Q ss_pred eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCc
Q psy5910 6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDD 85 (225)
Q Consensus 6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~ 85 (225)
.++||+++++.|...+....... .+..+++|+||||||||++|+++|+.++.++....+......
T Consensus 5 ~~iG~~~~~~~l~~~l~~~~~~~---------~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~------ 69 (305)
T TIGR00635 5 EFIGQEKVKEQLQLFIEAAKMRQ---------EALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKP------ 69 (305)
T ss_pred HHcCHHHHHHHHHHHHHHHHhcC---------CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCc------
Confidence 46999999999888763222111 223579999999999999999999999888766655433210
Q ss_pred HHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCcccccc-----ccCCCC
Q psy5910 86 VESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAE-----KKNPSQ 160 (225)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~-----~~~~~~ 160 (225)
.. +...+.. ...+.++||||++.+.+. .+..|+.+|+.....+--..+ ...+.
T Consensus 70 -~~-l~~~l~~------~~~~~vl~iDEi~~l~~~-------------~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~- 127 (305)
T TIGR00635 70 -GD-LAAILTN------LEEGDVLFIDEIHRLSPA-------------VEELLYPAMEDFRLDIVIGKGPSARSVRLDL- 127 (305)
T ss_pred -hh-HHHHHHh------cccCCEEEEehHhhhCHH-------------HHHHhhHHHhhhheeeeeccCccccceeecC-
Confidence 11 1122211 135789999999999866 567788888764422100000 00111
Q ss_pred CCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 161 NPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 161 ~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
+.+.++.+||. ...+++++++||...+.+..++.+.
T Consensus 128 -~~~~li~~t~~-------~~~l~~~l~sR~~~~~~l~~l~~~e 163 (305)
T TIGR00635 128 -PPFTLVGATTR-------AGMLTSPLRDRFGIILRLEFYTVEE 163 (305)
T ss_pred -CCeEEEEecCC-------ccccCHHHHhhcceEEEeCCCCHHH
Confidence 12566666666 4578999999997777777777654
No 71
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.71 E-value=1.8e-17 Score=151.91 Aligned_cols=143 Identities=22% Similarity=0.322 Sum_probs=102.1
Q ss_pred CCcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccc
Q psy5910 2 ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTE 78 (225)
Q Consensus 2 ~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~ 78 (225)
.|.+.|+||+++++.+.+++.....+.... ..|.+.+||+||||||||.+|+++|+.+ ...++.++++.+.+
T Consensus 563 ~L~~~v~GQ~~Av~~v~~~i~~~~~gl~~~-----~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~ 637 (852)
T TIGR03345 563 RLAERVIGQDHALEAIAERIRTARAGLEDP-----RKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQE 637 (852)
T ss_pred HhcCeEcChHHHHHHHHHHHHHHhcCCCCC-----CCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhh
Confidence 478899999999999999885443322111 1233457899999999999999999998 44688888766532
Q ss_pred -----------cCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCc
Q psy5910 79 -----------AGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNL 147 (225)
Q Consensus 79 -----------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~ 147 (225)
.+|.|......+...+ +....+||+|||++++.+. +++.|+++|+.+..
T Consensus 638 ~~~~~~l~g~~~gyvg~~~~g~L~~~v-------~~~p~svvllDEieka~~~-------------v~~~Llq~ld~g~l 697 (852)
T TIGR03345 638 AHTVSRLKGSPPGYVGYGEGGVLTEAV-------RRKPYSVVLLDEVEKAHPD-------------VLELFYQVFDKGVM 697 (852)
T ss_pred hhhhccccCCCCCcccccccchHHHHH-------HhCCCcEEEEechhhcCHH-------------HHHHHHHHhhccee
Confidence 3577765333343333 3357799999999999987 89999999997654
Q ss_pred CccccccccCCCCCCceeEEecCcce
Q psy5910 148 SITSLAEKKNPSQNPQVFNIDTTNIL 173 (225)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~i~ttn~~ 173 (225)
. ...++..+..+ .++|.|||..
T Consensus 698 ~--d~~Gr~vd~~n--~iiI~TSNlg 719 (852)
T TIGR03345 698 E--DGEGREIDFKN--TVILLTSNAG 719 (852)
T ss_pred e--cCCCcEEeccc--cEEEEeCCCc
Confidence 3 33344445555 7788888874
No 72
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.69 E-value=2.1e-18 Score=126.10 Aligned_cols=133 Identities=26% Similarity=0.377 Sum_probs=80.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCccccc-CccCC-cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcc
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEA-GYVGD-DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISK 119 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~-~~~g~-~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~ 119 (225)
+|||+||||||||++|+.+|+.++.++..+++....+. .+.|. ... .....+......-....+.+++|||++++.+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~-~~~~~~~~~~l~~a~~~~~il~lDEin~a~~ 79 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPS-NGQFEFKDGPLVRAMRKGGILVLDEINRAPP 79 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET--TTTTCEEE-CCCTTHHEEEEEEESSCGG--H
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeec-ccccccccccccccccceeEEEECCcccCCH
Confidence 58999999999999999999999999999988654321 11111 000 0000000000111123789999999999996
Q ss_pred cccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCC----CCceeEEecCcceeeccCccccHHHHHHhhc
Q psy5910 120 KTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQ----NPQVFNIDTTNILFIAGGAFSGIENFIINRI 191 (225)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~----~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf 191 (225)
. +++.|+.+|+......+.......... .+++.+|+|+|..- .....++++++|||
T Consensus 80 ~-------------v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~---~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 80 E-------------VLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRD---KGRKELSPALLDRF 139 (139)
T ss_dssp H-------------HHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST-----TTTTCHHHHTT-
T ss_pred H-------------HHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCC---CCcCcCCHHHHhhC
Confidence 6 899999999976655443332221111 11388888888822 11238999999998
No 73
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.69 E-value=1.6e-17 Score=126.89 Aligned_cols=167 Identities=17% Similarity=0.291 Sum_probs=83.1
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCC----eEEeccCc-c---
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVP----IIVVDATS-F--- 76 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~----~~~~~~~~-~--- 76 (225)
..|+||+.+|+.|.-+. ....++||+||||||||++|+.+...+..- ...+.... +
T Consensus 3 ~dI~GQe~aKrAL~iAA----------------aG~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~ 66 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAA----------------AGGHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGL 66 (206)
T ss_dssp CCSSSTHHHHHHHHHHH----------------HCC--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---
T ss_pred hhhcCcHHHHHHHHHHH----------------cCCCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccC
Confidence 46899999999998877 445699999999999999999999887321 11110000 0
Q ss_pred -------cccCcc----CCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcC
Q psy5910 77 -------TEAGYV----GDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGV 145 (225)
Q Consensus 77 -------~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~ 145 (225)
....|. ..+....+.....-..+.+..+.++|||+||+..+.+. +.+.|++.|+..
T Consensus 67 ~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~GVLflDE~~ef~~~-------------vld~Lr~ple~g 133 (206)
T PF01078_consen 67 GPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHRGVLFLDELNEFDRS-------------VLDALRQPLEDG 133 (206)
T ss_dssp S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS-HH-------------HHHHHHHHHHHS
T ss_pred CCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcCCEEEechhhhcCHH-------------HHHHHHHHHHCC
Confidence 000010 01111111111111235677889999999999998877 899999999987
Q ss_pred CcCccccccccCCCCCCceeEEecCcce---------eeccCcc-------ccHHHHHHhhcccccccccccc
Q psy5910 146 NLSITSLAEKKNPSQNPQVFNIDTTNIL---------FIAGGAF-------SGIENFIINRINQETNFLEKLN 202 (225)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~i~ttn~~---------~i~~~~~-------~~l~~al~~Rf~~~i~~~~~~~ 202 (225)
...+...+.......+ +.+|+|+|.= -.|+++. ..+..++++|||..+..+..+.
T Consensus 134 ~v~i~R~~~~~~~Pa~--f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllDRiDi~v~~~~~~~ 204 (206)
T PF01078_consen 134 EVTISRAGGSVTYPAR--FLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLDRIDIHVEVPRVSY 204 (206)
T ss_dssp BEEEEETTEEEEEB----EEEEEEE-S----------------------------------------------
T ss_pred eEEEEECCceEEEecc--cEEEEEecccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7766665543322233 8999998862 1233322 5588889999998877766554
No 74
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.69 E-value=5.4e-17 Score=149.54 Aligned_cols=174 Identities=24% Similarity=0.326 Sum_probs=116.0
Q ss_pred CCcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccc
Q psy5910 2 ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTE 78 (225)
Q Consensus 2 ~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~ 78 (225)
.|.+.|+||+.+++.+..++.....+.... ..|...+||+||||||||++|+++|+.+ +.+++.++++.+.+
T Consensus 562 ~l~~~v~GQ~~av~~v~~~i~~~~~gl~~~-----~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~ 636 (852)
T TIGR03346 562 VLHERVVGQDEAVEAVSDAIRRSRAGLSDP-----NRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYME 636 (852)
T ss_pred HhhcccCCChHHHHHHHHHHHHHhccCCCC-----CCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcc
Confidence 367889999999999999885433221111 1233468899999999999999999987 46788888865532
Q ss_pred -----------cCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCc
Q psy5910 79 -----------AGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNL 147 (225)
Q Consensus 79 -----------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~ 147 (225)
++|.|......+.... .....+||+|||++++.+. +++.|+++|+....
T Consensus 637 ~~~~~~l~g~~~g~~g~~~~g~l~~~v-------~~~p~~vlllDeieka~~~-------------v~~~Ll~~l~~g~l 696 (852)
T TIGR03346 637 KHSVARLIGAPPGYVGYEEGGQLTEAV-------RRKPYSVVLFDEVEKAHPD-------------VFNVLLQVLDDGRL 696 (852)
T ss_pred cchHHHhcCCCCCccCcccccHHHHHH-------HcCCCcEEEEeccccCCHH-------------HHHHHHHHHhcCce
Confidence 2455543222333322 2235679999999999988 89999999987654
Q ss_pred CccccccccCCCCCCceeEEecCcceee--cc---C-c------------cccHHHHHHhhcccccccccccccc
Q psy5910 148 SITSLAEKKNPSQNPQVFNIDTTNILFI--AG---G-A------------FSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~i~ttn~~~i--~~---~-~------------~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
. ...++..+..+ .++|+|||...- .. + . ...+.+.++.|++..+.|.+++.+.
T Consensus 697 ~--d~~g~~vd~rn--~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~ 767 (852)
T TIGR03346 697 T--DGQGRTVDFRN--TVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQ 767 (852)
T ss_pred e--cCCCeEEecCC--cEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHH
Confidence 4 22334444555 778888887320 00 0 0 0113355666888888888888766
No 75
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.68 E-value=9.7e-17 Score=132.73 Aligned_cols=159 Identities=15% Similarity=0.231 Sum_probs=99.3
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhC-------CCeE--------
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIIN-------VPII-------- 69 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~-------~~~~-------- 69 (225)
..|+||+++|..|..++.. ...+++||.||+|||||++||++++.+. .||.
T Consensus 17 ~~ivGq~~~k~al~~~~~~--------------p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~ 82 (350)
T CHL00081 17 TAIVGQEEMKLALILNVID--------------PKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPEL 82 (350)
T ss_pred HHHhChHHHHHHHHHhccC--------------CCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhh
Confidence 4589999999999887732 2336899999999999999999988873 2221
Q ss_pred -------------------------EeccCcccccCccC-CcHHHHHHHHHHh-cchhhhhhCCCEEEEcchhhhccccc
Q psy5910 70 -------------------------VVDATSFTEAGYVG-DDVESIIQKLLHE-CDYDVELAEQSIIYIDEIDKISKKTD 122 (225)
Q Consensus 70 -------------------------~~~~~~~~~~~~~g-~~~~~~~~~~~~~-~~~~~~~~~~~vl~iDEid~l~~~~~ 122 (225)
.+..+... ....| -+..+.+..-... ..+.+..+.+++||+||++.+.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~te-d~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~-- 159 (350)
T CHL00081 83 MSDEVREAIQNGETIETEKIKIPMVDLPLGATE-DRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDH-- 159 (350)
T ss_pred hchhhhhhhcccccccceeccccceecCCCCch-hhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHH--
Confidence 00000000 00111 1212111111000 134455677899999999999988
Q ss_pred ccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccc--ccccc
Q psy5910 123 VVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQE--TNFLE 199 (225)
Q Consensus 123 ~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~--i~~~~ 199 (225)
+|+.|++.|+.....+...+.......+ +++++|.|.. ...+++++.+||..+ ++++.
T Consensus 160 -----------~Q~~LLeam~e~~~~ier~G~s~~~p~r--fiviaT~np~------eg~l~~~LldRf~l~i~l~~~~ 219 (350)
T CHL00081 160 -----------LVDILLDSAASGWNTVEREGISIRHPAR--FVLVGSGNPE------EGELRPQLLDRFGMHAEIRTVK 219 (350)
T ss_pred -----------HHHHHHHHHHhCCeEEeeCCeeeecCCC--EEEEeccCcc------cCCCCHHHHHHhCceeecCCCC
Confidence 8999999998654333222222111122 8888888872 125999999999987 55554
No 76
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.68 E-value=6.5e-18 Score=118.94 Aligned_cols=129 Identities=22% Similarity=0.311 Sum_probs=70.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccC-cccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhccc
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDAT-SFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKK 120 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~ 120 (225)
||||.|+||+|||++|+++|+.++..|.++.+. ++..+...|..+-..-...| .......-..|+++||++++.++
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f---~~~~GPif~~ill~DEiNrappk 77 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEF---EFRPGPIFTNILLADEINRAPPK 77 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEE---EEEE-TT-SSEEEEETGGGS-HH
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCee---EeecChhhhceeeecccccCCHH
Confidence 689999999999999999999999999999874 34322222211000000000 00111223469999999999998
Q ss_pred ccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcc
Q psy5910 121 TDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRIN 192 (225)
Q Consensus 121 ~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~ 192 (225)
+|++|+++|++...++..... ..... +++|+|-|..=. .+.+ .|++|+++||-
T Consensus 78 -------------tQsAlLeam~Er~Vt~~g~~~--~lp~p--f~ViATqNp~e~-~Gty-~Lpea~~DRF~ 130 (131)
T PF07726_consen 78 -------------TQSALLEAMEERQVTIDGQTY--PLPDP--FFVIATQNPVEQ-EGTY-PLPEAQLDRFM 130 (131)
T ss_dssp -------------HHHHHHHHHHHSEEEETTEEE--E--SS---EEEEEE-TT---S-------HHHHTTSS
T ss_pred -------------HHHHHHHHHHcCeEEeCCEEE--ECCCc--EEEEEecCcccc-Ccee-cCCHHHhcccc
Confidence 899999999987655433221 12223 889999998422 2333 79999999993
No 77
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.68 E-value=7.6e-17 Score=133.02 Aligned_cols=163 Identities=18% Similarity=0.258 Sum_probs=99.4
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhC-------CCe--EEeccC-
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIIN-------VPI--IVVDAT- 74 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~-------~~~--~~~~~~- 74 (225)
..|+||+++++.+.-++.. ...+++||.|+||||||++|+++++.++ +++ ..+.+.
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~--------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~ 73 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAID--------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCP 73 (334)
T ss_pred HHhCCHHHHHHHHHHHHhc--------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCc
Confidence 3579999999988754410 1225899999999999999999999983 211 111100
Q ss_pred cc----------------------cccCccCC-cHHHHHH-HHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCC
Q psy5910 75 SF----------------------TEAGYVGD-DVESIIQ-KLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVS 130 (225)
Q Consensus 75 ~~----------------------~~~~~~g~-~~~~~~~-~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~ 130 (225)
+. ......|. +....+. .-+....|.+....++++|+||++.+.++
T Consensus 74 ~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~---------- 143 (334)
T PRK13407 74 EWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDH---------- 143 (334)
T ss_pred ccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHH----------
Confidence 00 00012221 1111110 00111124444567799999999999877
Q ss_pred hHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccc
Q psy5910 131 GEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLN 202 (225)
Q Consensus 131 ~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~ 202 (225)
+|+.|++.|+.....+...+.......+ +++++|+|.. ...+++++++||...+..+.|..
T Consensus 144 ---~q~~Lle~mee~~v~v~r~G~~~~~p~r--fiviAt~NP~------e~~l~~aLldRF~~~v~v~~~~~ 204 (334)
T PRK13407 144 ---IVDLLLDVAQSGENVVEREGLSIRHPAR--FVLVGSGNPE------EGELRPQLLDRFGLSVEVRSPRD 204 (334)
T ss_pred ---HHHHHHHHHHcCCeEEEECCeEEecCCC--EEEEecCCcc------cCCCCHHHHhhcceEEEcCCCCc
Confidence 8999999998755333333322211223 8888888861 12589999999988865555544
No 78
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.68 E-value=3.1e-17 Score=137.76 Aligned_cols=149 Identities=19% Similarity=0.377 Sum_probs=115.3
Q ss_pred eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccc----
Q psy5910 6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTE---- 78 (225)
Q Consensus 6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~---- 78 (225)
.|||++.++.++.+.+.. +......|||.|++||||..+||+|++.. +.||+.+||+.+-+
T Consensus 224 ~iIG~S~am~~ll~~i~~------------VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlE 291 (550)
T COG3604 224 GIIGRSPAMRQLLKEIEV------------VAKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLE 291 (550)
T ss_pred cceecCHHHHHHHHHHHH------------HhcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHH
Confidence 689999999999887722 22344589999999999999999999988 67899999987743
Q ss_pred cCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCC
Q psy5910 79 AGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNP 158 (225)
Q Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~ 158 (225)
+...|.. ...++..+..-.|..+.+.++.+|+|||..++.. +|..|+++|.+.. +...++...-
T Consensus 292 SELFGHe-KGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~-------------lQaKLLRvLQegE--ieRvG~~r~i 355 (550)
T COG3604 292 SELFGHE-KGAFTGAINTRRGRFELADGGTLFLDEIGELPLA-------------LQAKLLRVLQEGE--IERVGGDRTI 355 (550)
T ss_pred HHHhccc-ccccccchhccCcceeecCCCeEechhhccCCHH-------------HHHHHHHHHhhcc--eeecCCCcee
Confidence 2344544 3444555555556667789999999999999988 8999999998643 3445555555
Q ss_pred CCCCceeEEecCcceeeccCccccHHHHHHh-hccc
Q psy5910 159 SQNPQVFNIDTTNILFIAGGAFSGIENFIIN-RINQ 193 (225)
Q Consensus 159 ~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~-Rf~~ 193 (225)
..+ +.+|++||+ ++..++++ +|..
T Consensus 356 kVD--VRiIAATNR---------DL~~~V~~G~FRa 380 (550)
T COG3604 356 KVD--VRVIAATNR---------DLEEMVRDGEFRA 380 (550)
T ss_pred EEE--EEEEeccch---------hHHHHHHcCcchh
Confidence 555 999999999 99999998 5644
No 79
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.67 E-value=3.2e-17 Score=138.98 Aligned_cols=152 Identities=18% Similarity=0.338 Sum_probs=110.9
Q ss_pred CcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCccccc
Q psy5910 3 LDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEA 79 (225)
Q Consensus 3 l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~ 79 (225)
....++|++.+++++.+.+ ..+.....+||++|++||||..+||+|++.. +.||+.+||+.+...
T Consensus 139 ~~~~liG~S~am~~l~~~i------------~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~ 206 (464)
T COG2204 139 LGGELVGESPAMQQLRRLI------------AKVAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN 206 (464)
T ss_pred ccCCceecCHHHHHHHHHH------------HHHhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHH
Confidence 3567899999999998877 2233455699999999999999999999988 569999999877431
Q ss_pred ----CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccc
Q psy5910 80 ----GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEK 155 (225)
Q Consensus 80 ----~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~ 155 (225)
.+.|.. ...++....+..|.+..+.+++||||||..|+.. +|..|+++|+... +...++.
T Consensus 207 l~ESELFGhe-kGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~-------------~Q~kLLRvLqe~~--~~rvG~~ 270 (464)
T COG2204 207 LLESELFGHE-KGAFTGAITRRIGRFEQANGGTLFLDEIGEMPLE-------------LQVKLLRVLQERE--FERVGGN 270 (464)
T ss_pred HHHHHhhccc-ccCcCCcccccCcceeEcCCceEEeeccccCCHH-------------HHHHHHHHHHcCe--eEecCCC
Confidence 133332 1122222222235566789999999999999988 8999999998643 3344444
Q ss_pred cCCCCCCceeEEecCcceeeccCccccHHHHHHh-hccc
Q psy5910 156 KNPSQNPQVFNIDTTNILFIAGGAFSGIENFIIN-RINQ 193 (225)
Q Consensus 156 ~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~-Rf~~ 193 (225)
..-..+ +.+|++||. ++.+.+.. ||..
T Consensus 271 ~~i~vd--vRiIaaT~~---------dL~~~v~~G~FRe 298 (464)
T COG2204 271 KPIKVD--VRIIAATNR---------DLEEEVAAGRFRE 298 (464)
T ss_pred ccccee--eEEEeecCc---------CHHHHHHcCCcHH
Confidence 433444 999999999 88888877 5544
No 80
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.66 E-value=2.4e-16 Score=144.96 Aligned_cols=174 Identities=27% Similarity=0.371 Sum_probs=114.6
Q ss_pred CCcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccc
Q psy5910 2 ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTE 78 (225)
Q Consensus 2 ~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~ 78 (225)
.|.+.|+||+.+++.+...+.....+.... ..|...+||+||||||||++|++|++.+ +.+++.++++.+.+
T Consensus 565 ~l~~~viGQ~~ai~~l~~~i~~~~~gl~~~-----~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~ 639 (857)
T PRK10865 565 ELHHRVIGQNEAVEAVSNAIRRSRAGLSDP-----NRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFME 639 (857)
T ss_pred HhCCeEeCCHHHHHHHHHHHHHHHhcccCC-----CCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhh
Confidence 477899999999999998884332211110 1223468899999999999999999987 45688888866532
Q ss_pred -----------cCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCc
Q psy5910 79 -----------AGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNL 147 (225)
Q Consensus 79 -----------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~ 147 (225)
++|.|......+.... .....+||+|||++++.+. +++.|+++|+....
T Consensus 640 ~~~~~~LiG~~pgy~g~~~~g~l~~~v-------~~~p~~vLllDEieka~~~-------------v~~~Ll~ile~g~l 699 (857)
T PRK10865 640 KHSVSRLVGAPPGYVGYEEGGYLTEAV-------RRRPYSVILLDEVEKAHPD-------------VFNILLQVLDDGRL 699 (857)
T ss_pred hhhHHHHhCCCCcccccchhHHHHHHH-------HhCCCCeEEEeehhhCCHH-------------HHHHHHHHHhhCce
Confidence 2344443222222222 2235689999999999987 89999999987543
Q ss_pred CccccccccCCCCCCceeEEecCccee--ec---cC-c------------cccHHHHHHhhcccccccccccccc
Q psy5910 148 SITSLAEKKNPSQNPQVFNIDTTNILF--IA---GG-A------------FSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~i~ttn~~~--i~---~~-~------------~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
. ...++..+..+ .++|.|||..- +. .. . ...+.++++.|++..+.|.++..+.
T Consensus 700 ~--d~~gr~vd~rn--~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~ed 770 (857)
T PRK10865 700 T--DGQGRTVDFRN--TVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQH 770 (857)
T ss_pred e--cCCceEEeecc--cEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHH
Confidence 3 22233334444 66788888721 00 00 0 0124468888998888888888766
No 81
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.66 E-value=3.7e-16 Score=131.86 Aligned_cols=163 Identities=13% Similarity=0.164 Sum_probs=100.3
Q ss_pred CCCcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEE-ecc------
Q psy5910 1 MELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIV-VDA------ 73 (225)
Q Consensus 1 ~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~-~~~------ 73 (225)
|...+.|+||+++++.|+.++......... .+.. -...+||+||||+|||++|+.+|+.+.+.-.. ..|
T Consensus 1 ~~~f~~IiGq~~~~~~L~~~i~~~~~~~~~---~~~~-l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C 76 (394)
T PRK07940 1 MSVWDDLVGQEAVVAELRAAARAARADVAA---AGSG-MTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRAC 76 (394)
T ss_pred CChhhhccChHHHHHHHHHHHHhccccccc---cCCC-CCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHH
Confidence 455677899999999999988543321111 1111 12358899999999999999999987553100 000
Q ss_pred --------CcccccCccC--CcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHh
Q psy5910 74 --------TSFTEAGYVG--DDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIE 143 (225)
Q Consensus 74 --------~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~ 143 (225)
.++....-.| .. ...++.+++............|++|||+|++... .++.|++.||
T Consensus 77 ~~~~~~~hpD~~~i~~~~~~i~-i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~-------------aanaLLk~LE 142 (394)
T PRK07940 77 RTVLAGTHPDVRVVAPEGLSIG-VDEVRELVTIAARRPSTGRWRIVVIEDADRLTER-------------AANALLKAVE 142 (394)
T ss_pred HHHhcCCCCCEEEeccccccCC-HHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH-------------HHHHHHHHhh
Confidence 0110000001 11 1224444444321112235579999999999876 6899999998
Q ss_pred cCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 144 GVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
+-. .+ .++++.|+|. +.+.+.+++|+ ..+.|+.|+.+.
T Consensus 143 ep~-------------~~-~~fIL~a~~~--------~~llpTIrSRc-~~i~f~~~~~~~ 180 (394)
T PRK07940 143 EPP-------------PR-TVWLLCAPSP--------EDVLPTIRSRC-RHVALRTPSVEA 180 (394)
T ss_pred cCC-------------CC-CeEEEEECCh--------HHChHHHHhhC-eEEECCCCCHHH
Confidence 621 11 1555555554 58999999996 468888887765
No 82
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.65 E-value=7.6e-17 Score=136.99 Aligned_cols=151 Identities=23% Similarity=0.348 Sum_probs=107.5
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccc---
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTE--- 78 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~--- 78 (225)
+.|+|.+.+..++.+.+. ..+.....||+.|++||||..+|++|++.+ +.||+.+||+.+-+
T Consensus 245 ~~Iig~S~~m~~~~~~ak------------r~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~Ll 312 (560)
T COG3829 245 DDIIGESPAMLRVLELAK------------RIAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLL 312 (560)
T ss_pred hhhccCCHHHHHHHHHHH------------hhcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHHH
Confidence 467888877777766551 222445689999999999999999999988 67999999987743
Q ss_pred -cCccCCcHHHHHHHHHHh-cchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCcccccccc
Q psy5910 79 -AGYVGDDVESIIQKLLHE-CDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKK 156 (225)
Q Consensus 79 -~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~ 156 (225)
+.+.|.. ...++.+... ..|.++.++++.||||||..|+.. +|..||++|++.. +...++..
T Consensus 313 ESELFGye-~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~-------------LQaKLLRVLQEke--i~rvG~t~ 376 (560)
T COG3829 313 ESELFGYE-KGAFTGASKGGKPGLFELANGGTLFLDEIGEMPLP-------------LQAKLLRVLQEKE--IERVGGTK 376 (560)
T ss_pred HHHHhCcC-CccccccccCCCCcceeeccCCeEEehhhccCCHH-------------HHHHHHHHHhhce--EEecCCCC
Confidence 2233332 1222222222 234556679999999999999988 8999999998633 33444444
Q ss_pred CCCCCCceeEEecCcceeeccCccccHHHHHHh-hcccc
Q psy5910 157 NPSQNPQVFNIDTTNILFIAGGAFSGIENFIIN-RINQE 194 (225)
Q Consensus 157 ~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~-Rf~~~ 194 (225)
....+ +++|++||. ++.+++.. ||..-
T Consensus 377 ~~~vD--VRIIAATN~---------nL~~~i~~G~FReD 404 (560)
T COG3829 377 PIPVD--VRIIAATNR---------NLEKMIAEGTFRED 404 (560)
T ss_pred ceeeE--EEEEeccCc---------CHHHHHhcCcchhh
Confidence 33344 999999999 89999887 66543
No 83
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=6.5e-16 Score=135.27 Aligned_cols=143 Identities=22% Similarity=0.306 Sum_probs=92.4
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCC-----------------
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVP----------------- 67 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~----------------- 67 (225)
+.|+||+++++.|...+.... . ...+||+||+|||||++|+.+++.+++.
T Consensus 16 ddVIGQe~vv~~L~~al~~gR------------L-pHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~ 82 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR------------L-HHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCR 82 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC------------C-ceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccH
Confidence 457999999999988772111 1 1245899999999999999999999762
Q ss_pred ------------eEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHH
Q psy5910 68 ------------IIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQ 135 (225)
Q Consensus 68 ------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ 135 (225)
++.++... ... ...++.+.+............|++|||+|.|... .+
T Consensus 83 sC~~I~aG~hpDviEIdAas-------~~g-VDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~-------------Aa 141 (700)
T PRK12323 83 ACTEIDAGRFVDYIEMDAAS-------NRG-VDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNH-------------AF 141 (700)
T ss_pred HHHHHHcCCCCcceEecccc-------cCC-HHHHHHHHHHHHhchhcCCceEEEEEChHhcCHH-------------HH
Confidence 11111110 011 1223334333222212335679999999999876 78
Q ss_pred HHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 136 QSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 136 ~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
+.||+.||+- ..+ +.+|.+||. +..|.+.|++|+ ..+.|..++.++
T Consensus 142 NALLKTLEEP-------------P~~--v~FILaTte-------p~kLlpTIrSRC-q~f~f~~ls~ee 187 (700)
T PRK12323 142 NAMLKTLEEP-------------PEH--VKFILATTD-------PQKIPVTVLSRC-LQFNLKQMPPGH 187 (700)
T ss_pred HHHHHhhccC-------------CCC--ceEEEEeCC-------hHhhhhHHHHHH-HhcccCCCChHH
Confidence 9999999862 222 444444444 458999999996 446776666654
No 84
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.64 E-value=2.3e-16 Score=134.26 Aligned_cols=160 Identities=14% Similarity=0.180 Sum_probs=97.8
Q ss_pred CCcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCC--CeEEeccCccccc
Q psy5910 2 ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINV--PIIVVDATSFTEA 79 (225)
Q Consensus 2 ~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~--~~~~~~~~~~~~~ 79 (225)
+|.+.|+|++++++.+..++ ....+|||.||||||||++|++++...+. +|..+.+......
T Consensus 17 ~l~~~i~gre~vI~lll~aa----------------lag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~ 80 (498)
T PRK13531 17 ALEKGLYERSHAIRLCLLAA----------------LSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPE 80 (498)
T ss_pred HHhhhccCcHHHHHHHHHHH----------------ccCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcH
Confidence 46788999999999999988 66789999999999999999999998743 4444433211111
Q ss_pred CccCCc-HHHHH-HHHHHh-cchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCcccccccc
Q psy5910 80 GYVGDD-VESII-QKLLHE-CDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKK 156 (225)
Q Consensus 80 ~~~g~~-~~~~~-~~~~~~-~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~ 156 (225)
...|.. +.... ..-|.. ..+.+. ...++|+|||+++.++ +|+.|+.+|++..+... +..
T Consensus 81 DLfG~l~i~~~~~~g~f~r~~~G~L~--~A~lLfLDEI~rasp~-------------~QsaLLeam~Er~~t~g---~~~ 142 (498)
T PRK13531 81 EVFGPLSIQALKDEGRYQRLTSGYLP--EAEIVFLDEIWKAGPA-------------ILNTLLTAINERRFRNG---AHE 142 (498)
T ss_pred HhcCcHHHhhhhhcCchhhhcCCccc--cccEEeecccccCCHH-------------HHHHHHHHHHhCeEecC---CeE
Confidence 222321 01000 011110 001110 2239999999999888 89999999987655432 222
Q ss_pred CCCCCCceeEEecCcceeeccCccccHHHHHHhhccccccccccc
Q psy5910 157 NPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKL 201 (225)
Q Consensus 157 ~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~ 201 (225)
.+... -+++.+||.+=- .....+++.+||-.++..+.|.
T Consensus 143 ~~lp~--rfiv~ATN~LPE----~g~~leAL~DRFliri~vp~l~ 181 (498)
T PRK13531 143 EKIPM--RLLVTASNELPE----ADSSLEALYDRMLIRLWLDKVQ 181 (498)
T ss_pred EeCCC--cEEEEECCCCcc----cCCchHHhHhhEEEEEECCCCC
Confidence 22222 344444454100 0124469999997776666665
No 85
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.64 E-value=5.3e-16 Score=132.70 Aligned_cols=138 Identities=21% Similarity=0.304 Sum_probs=94.4
Q ss_pred eeechhhHHhh---heeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCcc
Q psy5910 6 HIIGQHETKKI---VSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYV 82 (225)
Q Consensus 6 ~i~G~~~~~~~---l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~ 82 (225)
.++||++++.. +...+.. ....+++|+||||||||++|+.+++.++.+++.+++....
T Consensus 13 d~vGq~~~v~~~~~L~~~i~~--------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~----- 73 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMIEA--------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSG----- 73 (413)
T ss_pred HhcCcHHHhCcchHHHHHHHc--------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccc-----
Confidence 46999998766 6665511 1224789999999999999999999999999988875421
Q ss_pred CCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCC
Q psy5910 83 GDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNP 162 (225)
Q Consensus 83 g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~ 162 (225)
...++.++...........+.||||||++.+... .++.|+..++...
T Consensus 74 ----~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~-------------~q~~LL~~le~~~---------------- 120 (413)
T PRK13342 74 ----VKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA-------------QQDALLPHVEDGT---------------- 120 (413)
T ss_pred ----HHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH-------------HHHHHHHHhhcCc----------------
Confidence 1122333333211111236789999999999866 6889999988532
Q ss_pred ceeEEecC--cceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 163 QVFNIDTT--NILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 163 ~~~~i~tt--n~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
++++.++ |. ...+++++++|+ ..+.|+.++.+.
T Consensus 121 -iilI~att~n~-------~~~l~~aL~SR~-~~~~~~~ls~e~ 155 (413)
T PRK13342 121 -ITLIGATTENP-------SFEVNPALLSRA-QVFELKPLSEED 155 (413)
T ss_pred -EEEEEeCCCCh-------hhhccHHHhccc-eeeEeCCCCHHH
Confidence 4444433 33 346889999998 447777776654
No 86
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=7.2e-16 Score=131.58 Aligned_cols=140 Identities=24% Similarity=0.324 Sum_probs=89.3
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCC-cEEEEcCCCCcHHHHHHHHHHHhCCC----------------
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKS-NILLVGPTGCGKTLMVKTLAKIINVP---------------- 67 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~-~vLl~Gp~GtGKT~la~~ia~~~~~~---------------- 67 (225)
+.++||++++..|..++... ..+ .+||+||+|||||++|+.+|+.+++.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~--------------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~ 83 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSG--------------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLE 83 (484)
T ss_pred HHHhChHHHHHHHHHHHHcC--------------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHH
Confidence 35699999999988876211 112 37899999999999999999998763
Q ss_pred --------eEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHH
Q psy5910 68 --------IIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLL 139 (225)
Q Consensus 68 --------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll 139 (225)
++.+++.. -.| ...++.+..............|++|||+|.+... .+++|+
T Consensus 84 i~~g~~~dviEIdaas-----~~g---Vd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~-------------A~NALL 142 (484)
T PRK14956 84 ITKGISSDVLEIDAAS-----NRG---IENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQ-------------SFNALL 142 (484)
T ss_pred HHccCCccceeechhh-----ccc---HHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHH-------------HHHHHH
Confidence 11111110 011 1122333322211112235579999999999876 799999
Q ss_pred HHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccc
Q psy5910 140 KLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLN 202 (225)
Q Consensus 140 ~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~ 202 (225)
+.||+- ..+ +++|.+|+. +..+.+++++|+. .+.|..++.
T Consensus 143 KtLEEP-------------p~~--viFILaTte-------~~kI~~TI~SRCq-~~~f~~ls~ 182 (484)
T PRK14956 143 KTLEEP-------------PAH--IVFILATTE-------FHKIPETILSRCQ-DFIFKKVPL 182 (484)
T ss_pred HHhhcC-------------CCc--eEEEeecCC-------hhhccHHHHhhhh-eeeecCCCH
Confidence 999862 122 555555554 4689999999963 245544443
No 87
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.63 E-value=5.1e-16 Score=128.40 Aligned_cols=163 Identities=18% Similarity=0.274 Sum_probs=99.8
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh-------CCCeE--------
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII-------NVPII-------- 69 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~-------~~~~~-------- 69 (225)
..|+||+++|..|.-++.. ...++++|.|+||+||||++++++..+ ++++-
T Consensus 4 ~~ivgq~~~~~al~~~~~~--------------~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVID--------------PKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM 69 (337)
T ss_pred cccccHHHHHHHHHHHhcC--------------CCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence 4689999999888666511 224689999999999999999999887 22221
Q ss_pred -----Ee--cc-------------Ccc----cccCccCC-cHHHHHH-HHHHhcchhhhhhCCCEEEEcchhhhcccccc
Q psy5910 70 -----VV--DA-------------TSF----TEAGYVGD-DVESIIQ-KLLHECDYDVELAEQSIIYIDEIDKISKKTDV 123 (225)
Q Consensus 70 -----~~--~~-------------~~~----~~~~~~g~-~~~~~~~-~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~ 123 (225)
.. .. .++ .+..+.|. +....+. .-+....+.+..+.++++|+||++.+.+.
T Consensus 70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~--- 146 (337)
T TIGR02030 70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDH--- 146 (337)
T ss_pred cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHH---
Confidence 00 00 000 00012222 1111110 00111124455667899999999999877
Q ss_pred cCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccc
Q psy5910 124 VSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLN 202 (225)
Q Consensus 124 ~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~ 202 (225)
+|+.|+++|+.....+...+.......+ +++++|.|.. ...+++++++||..++..+.|..
T Consensus 147 ----------~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r--~iviat~np~------eg~l~~~LldRf~l~i~l~~p~~ 207 (337)
T TIGR02030 147 ----------LVDVLLDVAASGWNVVEREGISIRHPAR--FVLVGSGNPE------EGELRPQLLDRFGLHAEIRTVRD 207 (337)
T ss_pred ----------HHHHHHHHHHhCCeEEEECCEEEEcCCC--EEEEeccccc------cCCCCHHHHhhcceEEECCCCCC
Confidence 8999999998653333222222111123 7888888761 12589999999998855555543
No 88
>PHA02244 ATPase-like protein
Probab=99.63 E-value=8.9e-16 Score=126.65 Aligned_cols=137 Identities=17% Similarity=0.261 Sum_probs=91.8
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCccc--ccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhh
Q psy5910 40 KSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFT--EAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKI 117 (225)
Q Consensus 40 ~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l 117 (225)
..+|||+||||||||++|+++|+.++.+++.++...-. -.++.... . .+.......+...+++++|||++.+
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~-g-----~~~dgpLl~A~~~GgvLiLDEId~a 192 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDAN-G-----KFHETPFYEAFKKGGLFFIDEIDAS 192 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhccccccc-c-----cccchHHHHHhhcCCEEEEeCcCcC
Confidence 35899999999999999999999999999998853100 00111111 0 1111111112357899999999999
Q ss_pred cccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeecc-Cc---cccHHHHHHhhccc
Q psy5910 118 SKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAG-GA---FSGIENFIINRINQ 193 (225)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~-~~---~~~l~~al~~Rf~~ 193 (225)
.+. ++..|..+++...... .++....+.+ +.+|+|+|...--+ +. ...+++|+++||..
T Consensus 193 ~p~-------------vq~~L~~lLd~r~l~l--~g~~i~~h~~--FRlIATsN~~~~G~~~~y~G~k~L~~AllDRFv~ 255 (383)
T PHA02244 193 IPE-------------ALIIINSAIANKFFDF--ADERVTAHED--FRVISAGNTLGKGADHIYVARNKIDGATLDRFAP 255 (383)
T ss_pred CHH-------------HHHHHHHHhccCeEEe--cCcEEecCCC--EEEEEeeCCCccCcccccCCCcccCHHHHhhcEE
Confidence 987 7899999998653332 2333334555 99999999854222 11 25899999999965
Q ss_pred c-ccccc
Q psy5910 194 E-TNFLE 199 (225)
Q Consensus 194 ~-i~~~~ 199 (225)
. +.|+.
T Consensus 256 I~~dyp~ 262 (383)
T PHA02244 256 IEFDYDE 262 (383)
T ss_pred eeCCCCc
Confidence 4 55544
No 89
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=1.1e-15 Score=131.95 Aligned_cols=143 Identities=25% Similarity=0.358 Sum_probs=91.0
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCC-----------------
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVP----------------- 67 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~----------------- 67 (225)
+.++||+++++.|...+... ..+..+||+|||||||||+|+++|+.+++.
T Consensus 14 ~divGq~~i~~~L~~~i~~~-------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i 80 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKN-------------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSI 80 (472)
T ss_pred HHccCcHHHHHHHHHHHHcC-------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHH
Confidence 34799999999888766211 111247899999999999999999998652
Q ss_pred -------eEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHH
Q psy5910 68 -------IIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLK 140 (225)
Q Consensus 68 -------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~ 140 (225)
++.++++. ..| ...++.+..............|++|||++.+... .++.|+.
T Consensus 81 ~~g~~~dv~el~aa~-----~~g---id~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~-------------a~~~LLk 139 (472)
T PRK14962 81 DEGTFMDVIELDAAS-----NRG---IDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKE-------------AFNALLK 139 (472)
T ss_pred hcCCCCccEEEeCcc-----cCC---HHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHH-------------HHHHHHH
Confidence 33333221 111 1123333333211112235679999999999755 6889999
Q ss_pred HHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 141 LIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 141 ~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
.|+... .. +++|.+++. +..+++++++|+. .+.|..++.+.
T Consensus 140 ~LE~p~-------------~~--vv~Ilattn-------~~kl~~~L~SR~~-vv~f~~l~~~e 180 (472)
T PRK14962 140 TLEEPP-------------SH--VVFVLATTN-------LEKVPPTIISRCQ-VIEFRNISDEL 180 (472)
T ss_pred HHHhCC-------------Cc--EEEEEEeCC-------hHhhhHHHhcCcE-EEEECCccHHH
Confidence 998521 11 444433332 4588999999974 57777776654
No 90
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.62 E-value=5.1e-16 Score=136.18 Aligned_cols=161 Identities=25% Similarity=0.311 Sum_probs=98.3
Q ss_pred eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh----------CCCeEEeccCc
Q psy5910 6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII----------NVPIIVVDATS 75 (225)
Q Consensus 6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~----------~~~~~~~~~~~ 75 (225)
.++||+++++.++.++. .....++||+||||||||++|+++++.+ +.+|+.++|..
T Consensus 66 ~iiGqs~~i~~l~~al~--------------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~ 131 (531)
T TIGR02902 66 EIIGQEEGIKALKAALC--------------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATT 131 (531)
T ss_pred HeeCcHHHHHHHHHHHh--------------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEcccc
Confidence 47999999999986541 1233589999999999999999998753 35789998864
Q ss_pred c--cccCc----cCCcHHHHH--HHHH------HhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHH
Q psy5910 76 F--TEAGY----VGDDVESII--QKLL------HECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKL 141 (225)
Q Consensus 76 ~--~~~~~----~g~~~~~~~--~~~~------~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~ 141 (225)
. .+.++ .|..-.... ...+ ....+.+....+++|||||++.+.+. .|+.|++.
T Consensus 132 ~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~-------------~q~~LL~~ 198 (531)
T TIGR02902 132 ARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPV-------------QMNKLLKV 198 (531)
T ss_pred ccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHH-------------HHHHHHHH
Confidence 2 11011 010000000 0000 01123344567899999999999988 89999999
Q ss_pred HhcCCcCcccccc----------------ccCCCCCCceeEE-ecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 142 IEGVNLSITSLAE----------------KKNPSQNPQVFNI-DTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 142 l~~~~~~~~~~~~----------------~~~~~~~~~~~~i-~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
|+.....+..... ...|.+ +.+| +|++. ++.+++++++|+. .+.|+....++
T Consensus 199 Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---~rlI~ATt~~-------p~~L~paLrsR~~-~I~f~pL~~ee 267 (531)
T TIGR02902 199 LEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPAD---FRLIGATTRN-------PEEIPPALRSRCV-EIFFRPLLDEE 267 (531)
T ss_pred HHhCeeeeccccccccCcccccchhhhcccCcccc---eEEEEEecCC-------cccCChHHhhhhh-eeeCCCCCHHH
Confidence 9864332211000 001111 3333 33333 6789999999973 46666665543
No 91
>KOG0989|consensus
Probab=99.62 E-value=4e-16 Score=123.92 Aligned_cols=139 Identities=20% Similarity=0.273 Sum_probs=86.5
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCC------eEEeccCcccc
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVP------IIVVDATSFTE 78 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~------~~~~~~~~~~~ 78 (225)
+.+.||+.++..|..++.. ...+++|||||||||||+.|+++|++++.+ +...+.++-..
T Consensus 36 de~~gQe~vV~~L~~a~~~--------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderG 101 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLR--------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERG 101 (346)
T ss_pred HhhcchHHHHHHHHHHHhh--------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccc
Confidence 3569999999999888821 223589999999999999999999999663 22233333221
Q ss_pred cCccCCcHHHHHHHHHHhcchhh--hhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCcccccccc
Q psy5910 79 AGYVGDDVESIIQKLLHECDYDV--ELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKK 156 (225)
Q Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~ 156 (225)
.....+.. +.+..+........ .....-|++|||.|.|... +|++|.+.||...
T Consensus 102 isvvr~Ki-k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsd-------------aq~aLrr~mE~~s---------- 157 (346)
T KOG0989|consen 102 ISVVREKI-KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSD-------------AQAALRRTMEDFS---------- 157 (346)
T ss_pred ccchhhhh-cCHHHHhhccccccCCCCCcceEEEEechhhhhHH-------------HHHHHHHHHhccc----------
Confidence 11111110 01111110000000 0113379999999999977 8999999999733
Q ss_pred CCCCCCceeEEecCcceeeccCccccHHHHHHhhccc
Q psy5910 157 NPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQ 193 (225)
Q Consensus 157 ~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~ 193 (225)
.. .++|..+|. .+.|+..+.+|..+
T Consensus 158 ---~~--trFiLIcny-------lsrii~pi~SRC~K 182 (346)
T KOG0989|consen 158 ---RT--TRFILICNY-------LSRIIRPLVSRCQK 182 (346)
T ss_pred ---cc--eEEEEEcCC-------hhhCChHHHhhHHH
Confidence 12 444444454 56889999998543
No 92
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.62 E-value=1.4e-15 Score=137.51 Aligned_cols=156 Identities=24% Similarity=0.276 Sum_probs=101.7
Q ss_pred eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh----------CCCeEEeccCc
Q psy5910 6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII----------NVPIIVVDATS 75 (225)
Q Consensus 6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~----------~~~~~~~~~~~ 75 (225)
.++|.++.++.+.+.+.. ....++||+||||||||++|+.++... +..++.++...
T Consensus 187 ~liGR~~ei~~~i~iL~r--------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~ 252 (758)
T PRK11034 187 PLIGREKELERAIQVLCR--------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGS 252 (758)
T ss_pred cCcCCCHHHHHHHHHHhc--------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHH
Confidence 478888888888776621 123588999999999999999999765 34455554443
Q ss_pred ccc-cCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCcccccc
Q psy5910 76 FTE-AGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAE 154 (225)
Q Consensus 76 ~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~ 154 (225)
+.. ..|.|+- +..++.++... ....++||||||++.+...+... .....+.+.|..++....
T Consensus 253 llaG~~~~Ge~-e~rl~~l~~~l----~~~~~~ILfIDEIh~L~g~g~~~----~g~~d~~nlLkp~L~~g~-------- 315 (758)
T PRK11034 253 LLAGTKYRGDF-EKRFKALLKQL----EQDTNSILFIDEIHTIIGAGAAS----GGQVDAANLIKPLLSSGK-------- 315 (758)
T ss_pred HhcccchhhhH-HHHHHHHHHHH----HhcCCCEEEeccHHHHhccCCCC----CcHHHHHHHHHHHHhCCC--------
Confidence 321 2355543 44555555543 34568899999999998664211 112335555666665422
Q ss_pred ccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 155 KKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 155 ~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
+.+|++|+..-. ...-..|+++.|||+ .|.++.|+.++
T Consensus 316 ---------i~vIgATt~~E~--~~~~~~D~AL~rRFq-~I~v~ePs~~~ 353 (758)
T PRK11034 316 ---------IRVIGSTTYQEF--SNIFEKDRALARRFQ-KIDITEPSIEE 353 (758)
T ss_pred ---------eEEEecCChHHH--HHHhhccHHHHhhCc-EEEeCCCCHHH
Confidence 788888876100 001157999999996 68888888876
No 93
>PLN03025 replication factor C subunit; Provisional
Probab=99.62 E-value=1.1e-15 Score=126.62 Aligned_cols=143 Identities=22% Similarity=0.254 Sum_probs=89.8
Q ss_pred eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCC-----CeEEeccCcccccC
Q psy5910 6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINV-----PIIVVDATSFTEAG 80 (225)
Q Consensus 6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~-----~~~~~~~~~~~~~~ 80 (225)
.++||+++++.|...+.. ...+++||+||||||||++|+++|+.+.. .++.+++++.
T Consensus 14 ~~~g~~~~~~~L~~~~~~--------------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~---- 75 (319)
T PLN03025 14 DIVGNEDAVSRLQVIARD--------------GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDD---- 75 (319)
T ss_pred HhcCcHHHHHHHHHHHhc--------------CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccccc----
Confidence 458999999988775521 12247999999999999999999998732 2444554432
Q ss_pred ccCCc-HHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCC
Q psy5910 81 YVGDD-VESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPS 159 (225)
Q Consensus 81 ~~g~~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~ 159 (225)
.|.+ +...+.. +.............|++|||+|.+... .|+.|++.|+....
T Consensus 76 -~~~~~vr~~i~~-~~~~~~~~~~~~~kviiiDE~d~lt~~-------------aq~aL~~~lE~~~~------------ 128 (319)
T PLN03025 76 -RGIDVVRNKIKM-FAQKKVTLPPGRHKIVILDEADSMTSG-------------AQQALRRTMEIYSN------------ 128 (319)
T ss_pred -ccHHHHHHHHHH-HHhccccCCCCCeEEEEEechhhcCHH-------------HHHHHHHHHhcccC------------
Confidence 1211 1111111 111100111124579999999999866 78999999985221
Q ss_pred CCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 160 QNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 160 ~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
. ..++.++|. ...+.+++++|+ ..+.|+.++.+.
T Consensus 129 -~--t~~il~~n~-------~~~i~~~L~SRc-~~i~f~~l~~~~ 162 (319)
T PLN03025 129 -T--TRFALACNT-------SSKIIEPIQSRC-AIVRFSRLSDQE 162 (319)
T ss_pred -C--ceEEEEeCC-------ccccchhHHHhh-hcccCCCCCHHH
Confidence 1 233334443 447788999986 358888777654
No 94
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.62 E-value=1.2e-15 Score=140.26 Aligned_cols=156 Identities=19% Similarity=0.264 Sum_probs=105.7
Q ss_pred eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh----------CCCeEEeccCc
Q psy5910 6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII----------NVPIIVVDATS 75 (225)
Q Consensus 6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~----------~~~~~~~~~~~ 75 (225)
.++|+++.++++.+.+.. ....+++|+||||||||++++.+|..+ +.+++.++.+.
T Consensus 179 ~vigr~~ei~~~i~iL~r--------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~ 244 (857)
T PRK10865 179 PVIGRDEEIRRTIQVLQR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA 244 (857)
T ss_pred cCCCCHHHHHHHHHHHhc--------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh
Confidence 479999988888775511 234589999999999999999999987 67788887766
Q ss_pred ccc-cCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCcccccc
Q psy5910 76 FTE-AGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAE 154 (225)
Q Consensus 76 ~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~ 154 (225)
+.. ..|.|+- +..+..++.... ....++||||||++.+....... .+.++++.|...|....
T Consensus 245 l~ag~~~~g~~-e~~lk~~~~~~~---~~~~~~ILfIDEih~l~~~~~~~-----~~~d~~~~lkp~l~~g~-------- 307 (857)
T PRK10865 245 LVAGAKYRGEF-EERLKGVLNDLA---KQEGNVILFIDELHTMVGAGKAD-----GAMDAGNMLKPALARGE-------- 307 (857)
T ss_pred hhhccchhhhh-HHHHHHHHHHHH---HcCCCeEEEEecHHHhccCCCCc-----cchhHHHHhcchhhcCC--------
Confidence 532 3466653 555666665431 12367899999999998664321 12235677777775422
Q ss_pred ccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 155 KKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 155 ~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
+.+|++|+..=. ...-++|+|+.|||+. |.++.|+.+.
T Consensus 308 ---------l~~IgaTt~~e~--r~~~~~d~al~rRf~~-i~v~eP~~~~ 345 (857)
T PRK10865 308 ---------LHCVGATTLDEY--RQYIEKDAALERRFQK-VFVAEPSVED 345 (857)
T ss_pred ---------CeEEEcCCCHHH--HHHhhhcHHHHhhCCE-EEeCCCCHHH
Confidence 778888877100 0001489999999974 6667776654
No 95
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.61 E-value=9.5e-16 Score=137.17 Aligned_cols=161 Identities=17% Similarity=0.215 Sum_probs=105.4
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhC-------------------
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIIN------------------- 65 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~------------------- 65 (225)
..|+||++++..+..++.. ...++|||.|++|||||++|+++++.+.
T Consensus 4 ~~ivGq~~~~~al~~~av~--------------~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~ 69 (633)
T TIGR02442 4 TAIVGQEDLKLALLLNAVD--------------PRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE 69 (633)
T ss_pred chhcChHHHHHHHHHHhhC--------------CCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence 4689999999888766611 1225799999999999999999999882
Q ss_pred ----------------CCeEEeccCcccccCccC-CcHHHHHHH-HHHhcchhhhhhCCCEEEEcchhhhcccccccCCC
Q psy5910 66 ----------------VPIIVVDATSFTEAGYVG-DDVESIIQK-LLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGK 127 (225)
Q Consensus 66 ----------------~~~~~~~~~~~~~~~~~g-~~~~~~~~~-~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~ 127 (225)
.||+.+.++.... ...| .+....+.. -+....+.+..+.++++||||++.+.+.
T Consensus 70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~-~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~------- 141 (633)
T TIGR02442 70 WCEECRRKYRPSEQRPVPFVNLPLGATED-RVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDH------- 141 (633)
T ss_pred cChhhhhcccccccCCCCeeeCCCCCcHH-HcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHH-------
Confidence 4565555543322 2333 232222210 0011134455668899999999999988
Q ss_pred CCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhccccccccccc
Q psy5910 128 DVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKL 201 (225)
Q Consensus 128 ~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~ 201 (225)
+|+.|++.|+.....+...+.......+ +.+|+|+|. + ...+.+++++||+..+..+.+.
T Consensus 142 ------~q~~Ll~~le~g~~~v~r~g~~~~~~~~--~~lIat~np---~---eg~l~~~L~dR~~l~i~v~~~~ 201 (633)
T TIGR02442 142 ------LVDVLLDAAAMGVNRVEREGLSVSHPAR--FVLIGTMNP---E---EGDLRPQLLDRFGLCVDVAAPR 201 (633)
T ss_pred ------HHHHHHHHHhcCCEEEEECCceeeecCC--eEEEEecCC---C---CCCCCHHHHhhcceEEEccCCC
Confidence 8999999998654333333222211223 788888886 1 1258899999998876666554
No 96
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.61 E-value=1.8e-15 Score=138.87 Aligned_cols=157 Identities=18% Similarity=0.228 Sum_probs=104.5
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh----------CCCeEEeccC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII----------NVPIIVVDAT 74 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~----------~~~~~~~~~~ 74 (225)
+.++|+++.++++.+.+.. ....+++|+||||||||++++.+|+.+ +.+++.++.+
T Consensus 187 d~~iGr~~ei~~~i~~l~r--------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~ 252 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLR--------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLG 252 (852)
T ss_pred CcccCCHHHHHHHHHHHhc--------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehh
Confidence 3568999988888765511 233589999999999999999999876 2446666666
Q ss_pred cccc-cCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccc
Q psy5910 75 SFTE-AGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLA 153 (225)
Q Consensus 75 ~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~ 153 (225)
.+.. ..|.|+- +..++.++.... ....+.||||||++.+...++..++ .++-+.|...|+...
T Consensus 253 ~l~ag~~~~ge~-e~~lk~ii~e~~---~~~~~~ILfIDEih~l~~~g~~~~~-----~d~~n~Lkp~l~~G~------- 316 (852)
T TIGR03345 253 LLQAGASVKGEF-ENRLKSVIDEVK---ASPQPIILFIDEAHTLIGAGGQAGQ-----GDAANLLKPALARGE------- 316 (852)
T ss_pred hhhcccccchHH-HHHHHHHHHHHH---hcCCCeEEEEeChHHhccCCCcccc-----ccHHHHhhHHhhCCC-------
Confidence 5532 2455543 556666666541 1236789999999999876432111 123456777776432
Q ss_pred cccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 154 EKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 154 ~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
+.+|++|+..-. ..+-.+|+|+.|||. .|.++.|+.+.
T Consensus 317 ----------l~~IgaTT~~e~--~~~~~~d~AL~rRf~-~i~v~eps~~~ 354 (852)
T TIGR03345 317 ----------LRTIAATTWAEY--KKYFEKDPALTRRFQ-VVKVEEPDEET 354 (852)
T ss_pred ----------eEEEEecCHHHH--hhhhhccHHHHHhCe-EEEeCCCCHHH
Confidence 777777765000 001258999999995 58888888876
No 97
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.61 E-value=2.6e-15 Score=132.92 Aligned_cols=142 Identities=22% Similarity=0.252 Sum_probs=91.8
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCc-EEEEcCCCCcHHHHHHHHHHHhCCCe---------------
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSN-ILLVGPTGCGKTLMVKTLAKIINVPI--------------- 68 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-vLl~Gp~GtGKT~la~~ia~~~~~~~--------------- 68 (225)
+.|+||+++++.|...+... ...+ +||+||+|||||++|+.+|+.+++..
T Consensus 16 ~divGQe~vv~~L~~~l~~~--------------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~ 81 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLG--------------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCRE 81 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcC--------------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHH
Confidence 45699999999998777211 1124 57999999999999999999997631
Q ss_pred ---------EEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHH
Q psy5910 69 ---------IVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLL 139 (225)
Q Consensus 69 ---------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll 139 (225)
+.+++.. .. . ...++.+..............|++|||+|.|... .+++|+
T Consensus 82 i~~g~~~D~ieidaas-----~~--~-VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~-------------a~NALL 140 (647)
T PRK07994 82 IEQGRFVDLIEIDAAS-----RT--K-VEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRH-------------SFNALL 140 (647)
T ss_pred HHcCCCCCceeecccc-----cC--C-HHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHH-------------HHHHHH
Confidence 1111110 01 1 1123344333221112235679999999999976 799999
Q ss_pred HHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 140 KLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 140 ~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
+.||+- ..+ +.+|.+|+. +..|.+.+++|+ ..+.|..++.++
T Consensus 141 KtLEEP-------------p~~--v~FIL~Tt~-------~~kLl~TI~SRC-~~~~f~~Ls~~e 182 (647)
T PRK07994 141 KTLEEP-------------PEH--VKFLLATTD-------PQKLPVTILSRC-LQFHLKALDVEQ 182 (647)
T ss_pred HHHHcC-------------CCC--eEEEEecCC-------ccccchHHHhhh-eEeeCCCCCHHH
Confidence 999962 222 333333333 358889999994 557777777654
No 98
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=2.2e-15 Score=133.67 Aligned_cols=143 Identities=21% Similarity=0.257 Sum_probs=91.3
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCC-----------------
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVP----------------- 67 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~----------------- 67 (225)
+.|+||+++++.|...+... .-...+||+||+|||||++|+.+++.+++.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~g-------------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I 82 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGG-------------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREI 82 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcC-------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHH
Confidence 45799999999998876211 011245799999999999999999998753
Q ss_pred -------eEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHH
Q psy5910 68 -------IIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLK 140 (225)
Q Consensus 68 -------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~ 140 (225)
++.++..+ ... ...++.+++............|+||||+|.|... .++.|++
T Consensus 83 ~~G~h~DviEIDAas-------~rg-VDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~-------------A~NALLK 141 (830)
T PRK07003 83 DEGRFVDYVEMDAAS-------NRG-VDEMAALLERAVYAPVDARFKVYMIDEVHMLTNH-------------AFNAMLK 141 (830)
T ss_pred hcCCCceEEEecccc-------ccc-HHHHHHHHHHHHhccccCCceEEEEeChhhCCHH-------------HHHHHHH
Confidence 11111110 011 1123333333211112235679999999999866 7899999
Q ss_pred HHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 141 LIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 141 ~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
.||+.. .+ +.+|.+||. ...|.+.|++|+ ..+.|.....++
T Consensus 142 tLEEPP-------------~~--v~FILaTtd-------~~KIp~TIrSRC-q~f~Fk~Ls~ee 182 (830)
T PRK07003 142 TLEEPP-------------PH--VKFILATTD-------PQKIPVTVLSRC-LQFNLKQMPAGH 182 (830)
T ss_pred HHHhcC-------------CC--eEEEEEECC-------hhhccchhhhhe-EEEecCCcCHHH
Confidence 999632 22 455555544 458899999996 346666655543
No 99
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=4.9e-15 Score=133.62 Aligned_cols=150 Identities=17% Similarity=0.220 Sum_probs=89.6
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCc-EEEEcCCCCcHHHHHHHHHHHhCCCeE-E-eccC------c
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSN-ILLVGPTGCGKTLMVKTLAKIINVPII-V-VDAT------S 75 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-vLl~Gp~GtGKT~la~~ia~~~~~~~~-~-~~~~------~ 75 (225)
+.|+||+++++.|..++... ...+ +||+||+|||||++||.+|+.+++... . ..|. .
T Consensus 16 ddIIGQe~Iv~~LknaI~~~--------------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~ 81 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQ--------------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVE 81 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhC--------------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHH
Confidence 35689999999988766211 1135 479999999999999999999976411 0 0010 0
Q ss_pred cccc------CccCC--cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCc
Q psy5910 76 FTEA------GYVGD--DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNL 147 (225)
Q Consensus 76 ~~~~------~~~g~--~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~ 147 (225)
+... -+.+. .....++.+..............|+||||++.|... .++.|++.||+..
T Consensus 82 i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~e-------------AqNALLKtLEEPP- 147 (944)
T PRK14949 82 IAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRS-------------SFNALLKTLEEPP- 147 (944)
T ss_pred HhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHH-------------HHHHHHHHHhccC-
Confidence 0000 01111 001223444333221112235679999999999876 8999999999622
Q ss_pred CccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 148 SITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
.+ +++|.+++. ...|.+.|++|+ ..+.|.....+.
T Consensus 148 ------------~~--vrFILaTTe-------~~kLl~TIlSRC-q~f~fkpLs~eE 182 (944)
T PRK14949 148 ------------EH--VKFLLATTD-------PQKLPVTVLSRC-LQFNLKSLTQDE 182 (944)
T ss_pred ------------CC--eEEEEECCC-------chhchHHHHHhh-eEEeCCCCCHHH
Confidence 22 333333333 347888999985 336666665543
No 100
>KOG1051|consensus
Probab=99.59 E-value=3.1e-15 Score=134.95 Aligned_cols=142 Identities=25% Similarity=0.359 Sum_probs=108.7
Q ss_pred CCcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCc---
Q psy5910 2 ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATS--- 75 (225)
Q Consensus 2 ~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~--- 75 (225)
.|.++|+||++++..+.++|.....+.... .+...++|.||.|+|||.||+++|..+ ...++.++.+.
T Consensus 559 ~L~~~V~gQ~eAv~aIa~AI~~sr~gl~~~------~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~e 632 (898)
T KOG1051|consen 559 RLHERVIGQDEAVAAIAAAIRRSRAGLKDP------NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQE 632 (898)
T ss_pred HHHhhccchHHHHHHHHHHHHhhhcccCCC------CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhh
Confidence 367899999999999999995544332111 234578899999999999999999998 34588888876
Q ss_pred -----ccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCcc
Q psy5910 76 -----FTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSIT 150 (225)
Q Consensus 76 -----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ 150 (225)
-..++|+|.+....++...+ ....+||+|||||++.+. +++.|+++||.+.. .
T Consensus 633 vskligsp~gyvG~e~gg~Lteavr-------rrP~sVVLfdeIEkAh~~-------------v~n~llq~lD~Grl--t 690 (898)
T KOG1051|consen 633 VSKLIGSPPGYVGKEEGGQLTEAVK-------RRPYSVVLFEEIEKAHPD-------------VLNILLQLLDRGRL--T 690 (898)
T ss_pred hhhccCCCcccccchhHHHHHHHHh-------cCCceEEEEechhhcCHH-------------HHHHHHHHHhcCcc--c
Confidence 34468999887766665543 357899999999999988 89999999998544 3
Q ss_pred ccccccCCCCCCceeEEecCcce
Q psy5910 151 SLAEKKNPSQNPQVFNIDTTNIL 173 (225)
Q Consensus 151 ~~~~~~~~~~~~~~~~i~ttn~~ 173 (225)
...++.-.+.+ .++|+|+|..
T Consensus 691 Ds~Gr~Vd~kN--~I~IMTsn~~ 711 (898)
T KOG1051|consen 691 DSHGREVDFKN--AIFIMTSNVG 711 (898)
T ss_pred cCCCcEeeccc--eEEEEecccc
Confidence 44555556666 7888888773
No 101
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=5.6e-15 Score=128.70 Aligned_cols=141 Identities=23% Similarity=0.273 Sum_probs=89.4
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCC-cEEEEcCCCCcHHHHHHHHHHHhCCC----------------
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKS-NILLVGPTGCGKTLMVKTLAKIINVP---------------- 67 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~-~vLl~Gp~GtGKT~la~~ia~~~~~~---------------- 67 (225)
+.|+||+++++.|..++... ... .+||+||+|||||++|+.+|+.+++.
T Consensus 16 ~divGq~~v~~~L~~~~~~~--------------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~ 81 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQ--------------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCRE 81 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhC--------------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHH
Confidence 45799999999998877211 112 46899999999999999999999653
Q ss_pred --------eEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHH
Q psy5910 68 --------IIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLL 139 (225)
Q Consensus 68 --------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll 139 (225)
++.+++.. . .. ...++.+.+............|++|||+|.+... .+++|+
T Consensus 82 i~~g~~~d~~eidaas-----~--~~-v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~-------------a~naLL 140 (509)
T PRK14958 82 IDEGRFPDLFEVDAAS-----R--TK-VEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGH-------------SFNALL 140 (509)
T ss_pred HhcCCCceEEEEcccc-----c--CC-HHHHHHHHHHHhhccccCCcEEEEEEChHhcCHH-------------HHHHHH
Confidence 22232211 1 11 1123444433222222335679999999999976 789999
Q ss_pred HHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhccccccccccccc
Q psy5910 140 KLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNN 203 (225)
Q Consensus 140 ~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~ 203 (225)
+.||+. ..+ +.+|.+|+. +..+.+.+++|+ ..+.|...+.+
T Consensus 141 k~LEep-------------p~~--~~fIlattd-------~~kl~~tI~SRc-~~~~f~~l~~~ 181 (509)
T PRK14958 141 KTLEEP-------------PSH--VKFILATTD-------HHKLPVTVLSRC-LQFHLAQLPPL 181 (509)
T ss_pred HHHhcc-------------CCC--eEEEEEECC-------hHhchHHHHHHh-hhhhcCCCCHH
Confidence 999962 122 333333332 347788899986 33566555443
No 102
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.58 E-value=5.6e-15 Score=135.89 Aligned_cols=155 Identities=19% Similarity=0.218 Sum_probs=106.7
Q ss_pred eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh----------CCCeEEeccCc
Q psy5910 6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII----------NVPIIVVDATS 75 (225)
Q Consensus 6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~----------~~~~~~~~~~~ 75 (225)
.++|.++.++++.+.+.. ..+.+++|+||||||||++++.+|..+ +.+++.++.+.
T Consensus 180 ~~igr~~ei~~~~~~L~r--------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~ 245 (821)
T CHL00095 180 PVIGREKEIERVIQILGR--------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGL 245 (821)
T ss_pred CCCCcHHHHHHHHHHHcc--------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHH
Confidence 579999999999887621 244689999999999999999999876 36788888876
Q ss_pred cc-ccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCcccccc
Q psy5910 76 FT-EAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAE 154 (225)
Q Consensus 76 ~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~ 154 (225)
+. ..+|.|+ .+..+..+++.+ ....+.||||||++.+.......++ ..+.+.|...|....
T Consensus 246 l~ag~~~~ge-~e~rl~~i~~~~----~~~~~~ILfiDEih~l~~~g~~~g~-----~~~a~lLkp~l~rg~-------- 307 (821)
T CHL00095 246 LLAGTKYRGE-FEERLKRIFDEI----QENNNIILVIDEVHTLIGAGAAEGA-----IDAANILKPALARGE-------- 307 (821)
T ss_pred HhccCCCccH-HHHHHHHHHHHH----HhcCCeEEEEecHHHHhcCCCCCCc-----ccHHHHhHHHHhCCC--------
Confidence 53 3457665 356677777654 3346789999999999866432111 135667777776432
Q ss_pred ccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 155 KKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 155 ~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
+.+|++|+..=. ..+...|+++.+||.. |.++.|+.++
T Consensus 308 ---------l~~IgaTt~~ey--~~~ie~D~aL~rRf~~-I~v~ep~~~e 345 (821)
T CHL00095 308 ---------LQCIGATTLDEY--RKHIEKDPALERRFQP-VYVGEPSVEE 345 (821)
T ss_pred ---------cEEEEeCCHHHH--HHHHhcCHHHHhcceE-EecCCCCHHH
Confidence 777777776100 0002468999999965 5666666544
No 103
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.58 E-value=1.9e-15 Score=126.16 Aligned_cols=160 Identities=16% Similarity=0.246 Sum_probs=106.7
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh----CCCeEEeccCcccccC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII----NVPIIVVDATSFTEAG 80 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~----~~~~~~~~~~~~~~~~ 80 (225)
+.++|.+...+.+++.+.. ......+||++|++||||+.+|+.|+... ..||+.+||+.+.++.
T Consensus 78 ~~LIG~~~~~~~~~eqik~------------~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~ 145 (403)
T COG1221 78 DDLIGESPSLQELREQIKA------------YAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENL 145 (403)
T ss_pred hhhhccCHHHHHHHHHHHh------------hCCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCH
Confidence 4567777666666665521 22445699999999999999999998654 5689999999886531
Q ss_pred ----ccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCcccccccc
Q psy5910 81 ----YVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKK 156 (225)
Q Consensus 81 ----~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~ 156 (225)
..|.. +..++.......+.++.+.++++|+||+..+.+. .|..|+.+||..... ..++..
T Consensus 146 ~~~eLFG~~-kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~-------------~Q~kLl~~le~g~~~--rvG~~~ 209 (403)
T COG1221 146 QEAELFGHE-KGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPE-------------GQEKLLRVLEEGEYR--RVGGSQ 209 (403)
T ss_pred HHHHHhccc-cceeecccCCcCchheecCCCEEehhhhhhCCHh-------------HHHHHHHHHHcCceE--ecCCCC
Confidence 11221 1112222222235566779999999999999998 899999999975432 233322
Q ss_pred CCCCCCceeEEecCcceeeccCccccHHHHHHh-------hccccccccccccc
Q psy5910 157 NPSQNPQVFNIDTTNILFIAGGAFSGIENFIIN-------RINQETNFLEKLNN 203 (225)
Q Consensus 157 ~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~-------Rf~~~i~~~~~~~~ 203 (225)
....+ |.+|++|+. +++.+++. |+...|..|+-.+.
T Consensus 210 ~~~~d--VRli~AT~~---------~l~~~~~~g~dl~~rl~~~~I~LPpLrER 252 (403)
T COG1221 210 PRPVD--VRLICATTE---------DLEEAVLAGADLTRRLNILTITLPPLRER 252 (403)
T ss_pred CcCCC--ceeeecccc---------CHHHHHHhhcchhhhhcCceecCCChhhc
Confidence 23333 889999988 78887777 44334555554443
No 104
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.58 E-value=1.1e-15 Score=133.74 Aligned_cols=180 Identities=17% Similarity=0.202 Sum_probs=105.0
Q ss_pred CcceeechhhHHhhheeeeEecccce-Eee-cccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccC
Q psy5910 3 LDRHIIGQHETKKIVSVGVYNHYKRL-FLL-KSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAG 80 (225)
Q Consensus 3 l~~~i~G~~~~~~~l~~~l~~~~~~~-~~~-~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~ 80 (225)
+.-.|+|++.+|..+.-.+. ++. +.. ++..+ ....+|||+|+||||||++|+.+++.+....+. .+......+
T Consensus 201 i~p~i~G~~~~k~~l~l~l~---gg~~~~~~~~~~~-r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~-~~~~~~~~~ 275 (509)
T smart00350 201 LAPSIYGHEDIKKAILLLLF---GGVHKNLPDGMKI-RGDINILLLGDPGTAKSQLLKYVEKTAPRAVYT-TGKGSSAVG 275 (509)
T ss_pred hCccccCcHHHHHHHHHHHh---CCCccccCCCccc-cccceEEEeCCCChhHHHHHHHHHHHcCcceEc-CCCCCCcCC
Confidence 44568899998877765541 111 111 11111 223489999999999999999999987544222 211111111
Q ss_pred ccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCC
Q psy5910 81 YVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQ 160 (225)
Q Consensus 81 ~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~ 160 (225)
+.+..........+....+.+..+.+++++|||++++.+. .|..|+++|+....++...+.......
T Consensus 276 l~~~~~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~~~-------------~q~~L~e~me~~~i~i~k~G~~~~l~~ 342 (509)
T smart00350 276 LTAAVTRDPETREFTLEGGALVLADNGVCCIDEFDKMDDS-------------DRTAIHEAMEQQTISIAKAGITTTLNA 342 (509)
T ss_pred ccccceEccCcceEEecCccEEecCCCEEEEechhhCCHH-------------HHHHHHHHHhcCEEEEEeCCEEEEecC
Confidence 1111100000000111123344567899999999999977 799999999876544443333322233
Q ss_pred CCceeEEecCcceeec-------cCccccHHHHHHhhcccc---ccccccccc
Q psy5910 161 NPQVFNIDTTNILFIA-------GGAFSGIENFIINRINQE---TNFLEKLNN 203 (225)
Q Consensus 161 ~~~~~~i~ttn~~~i~-------~~~~~~l~~al~~Rf~~~---i~~~~~~~~ 203 (225)
+ +.+|+|+|...-- +.+. .+++++++|||.. .+++.++.+
T Consensus 343 ~--~~viAa~NP~~g~y~~~~~~~~n~-~l~~~lLsRFdLi~~~~d~~~~~~d 392 (509)
T smart00350 343 R--CSVLAAANPIGGRYDPKLTPEENI-DLPAPILSRFDLLFVVLDEVDEERD 392 (509)
T ss_pred C--cEEEEEeCCCCcccCCCcChhhcc-CCChHHhCceeeEEEecCCCChHHH
Confidence 3 8899999985310 0112 7999999999887 344444444
No 105
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=1e-14 Score=122.81 Aligned_cols=148 Identities=24% Similarity=0.269 Sum_probs=88.9
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEe--ccC--------
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVV--DAT-------- 74 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~--~~~-------- 74 (225)
+.|+||+++++.+..++... .-+..+||+||+|||||++|+++|+.+++..... .|.
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~-------------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~ 82 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLG-------------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEI 82 (363)
T ss_pred hhccChHHHHHHHHHHHHcC-------------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHH
Confidence 45689999999998766210 0112468999999999999999999986431100 000
Q ss_pred ------cccccCccC---CcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcC
Q psy5910 75 ------SFTEAGYVG---DDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGV 145 (225)
Q Consensus 75 ------~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~ 145 (225)
++.. +.+ .. ...++.+..............|++|||++.+... .++.|++.|+..
T Consensus 83 ~~~~~~d~~~--~~~~~~~~-v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~-------------a~naLLk~lEe~ 146 (363)
T PRK14961 83 EKGLCLDLIE--IDAASRTK-VEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRH-------------SFNALLKTLEEP 146 (363)
T ss_pred hcCCCCceEE--ecccccCC-HHHHHHHHHHHhcCcccCCceEEEEEChhhcCHH-------------HHHHHHHHHhcC
Confidence 1100 000 11 1223333333211111234569999999999865 688999999862
Q ss_pred CcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 146 NLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
. .. +.+|.+++. .+.+.+++++|+ ..+.|+.++.++
T Consensus 147 ~-------------~~--~~fIl~t~~-------~~~l~~tI~SRc-~~~~~~~l~~~e 182 (363)
T PRK14961 147 P-------------QH--IKFILATTD-------VEKIPKTILSRC-LQFKLKIISEEK 182 (363)
T ss_pred C-------------CC--eEEEEEcCC-------hHhhhHHHHhhc-eEEeCCCCCHHH
Confidence 1 12 333333333 357889999997 347787777654
No 106
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=9.3e-15 Score=128.33 Aligned_cols=143 Identities=22% Similarity=0.281 Sum_probs=89.9
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCC-----------------
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVP----------------- 67 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~----------------- 67 (225)
+.|+||+++++.|..++... .....+||+||+|||||++|+.+|+.+++.
T Consensus 15 ddVIGQe~vv~~L~~aI~~g-------------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I 81 (702)
T PRK14960 15 NELVGQNHVSRALSSALERG-------------RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAV 81 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcC-------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHH
Confidence 45699999999998877211 112356899999999999999999998762
Q ss_pred -------eEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHH
Q psy5910 68 -------IIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLK 140 (225)
Q Consensus 68 -------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~ 140 (225)
++.+++++ .. . ...++.+..............|++|||++.+... .++.|++
T Consensus 82 ~~g~hpDviEIDAAs-----~~--~-VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~-------------A~NALLK 140 (702)
T PRK14960 82 NEGRFIDLIEIDAAS-----RT--K-VEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTH-------------SFNALLK 140 (702)
T ss_pred hcCCCCceEEecccc-----cC--C-HHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHH-------------HHHHHHH
Confidence 22222211 01 1 1223344333222222235679999999999876 7899999
Q ss_pred HHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 141 LIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 141 ~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
.|++.. .. +.+|.+++. ...++..+++|+ ..+.|..++.+.
T Consensus 141 tLEEPP-------------~~--v~FILaTtd-------~~kIp~TIlSRC-q~feFkpLs~eE 181 (702)
T PRK14960 141 TLEEPP-------------EH--VKFLFATTD-------PQKLPITVISRC-LQFTLRPLAVDE 181 (702)
T ss_pred HHhcCC-------------CC--cEEEEEECC-------hHhhhHHHHHhh-heeeccCCCHHH
Confidence 998621 12 333333333 346788888886 346666665543
No 107
>KOG2028|consensus
Probab=99.56 E-value=2.4e-15 Score=122.24 Aligned_cols=114 Identities=20% Similarity=0.311 Sum_probs=76.9
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhCCC---eEEeccCcccccCccCCcHHHHHHHHHHhcchh-hhhhCCCEEEEcchhh
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKIINVP---IIVVDATSFTEAGYVGDDVESIIQKLLHECDYD-VELAEQSIIYIDEIDK 116 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~vl~iDEid~ 116 (225)
+.++|+||||||||+||+.|+.....+ |+.+++..-. ..-++.+|+.+... ..-.+..|+|||||++
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~---------t~dvR~ife~aq~~~~l~krkTilFiDEiHR 233 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAK---------TNDVRDIFEQAQNEKSLTKRKTILFIDEIHR 233 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccc---------hHHHHHHHHHHHHHHhhhcceeEEEeHHhhh
Confidence 578899999999999999999988666 5555443321 22345555554221 1224678999999999
Q ss_pred hcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecC--cceeeccCccccHHHHHHhhcccc
Q psy5910 117 ISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTT--NILFIAGGAFSGIENFIINRINQE 194 (225)
Q Consensus 117 l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~tt--n~~~i~~~~~~~l~~al~~Rf~~~ 194 (225)
+... .|..|+...|.+. +.+|.+| |.- -.+..|+++|+...
T Consensus 234 FNks-------------QQD~fLP~VE~G~-----------------I~lIGATTENPS-------Fqln~aLlSRC~Vf 276 (554)
T KOG2028|consen 234 FNKS-------------QQDTFLPHVENGD-----------------ITLIGATTENPS-------FQLNAALLSRCRVF 276 (554)
T ss_pred hhhh-------------hhhcccceeccCc-----------------eEEEecccCCCc-------cchhHHHHhcccee
Confidence 9877 6888888888643 5555544 442 27888999986554
Q ss_pred cccccc
Q psy5910 195 TNFLEK 200 (225)
Q Consensus 195 i~~~~~ 200 (225)
+--+.+
T Consensus 277 vLekL~ 282 (554)
T KOG2028|consen 277 VLEKLP 282 (554)
T ss_pred EeccCC
Confidence 333333
No 108
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=2.6e-14 Score=123.11 Aligned_cols=143 Identities=25% Similarity=0.302 Sum_probs=91.3
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCC-----------------
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVP----------------- 67 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~----------------- 67 (225)
+.++||+++++.|..++..- .-...+||+||+|+||||+|+.+|+.+++.
T Consensus 13 ~dliGQe~vv~~L~~a~~~~-------------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i 79 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLN-------------KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISI 79 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcC-------------CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHH
Confidence 45699999999998765211 112368899999999999999999987542
Q ss_pred -------eEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHH
Q psy5910 68 -------IIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLK 140 (225)
Q Consensus 68 -------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~ 140 (225)
++.+++++ ..| ...++.+...+....-.....|++|||++.+... .+++|++
T Consensus 80 ~~~~~~Dv~eidaas-----~~~---vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~-------------A~NaLLK 138 (491)
T PRK14964 80 KNSNHPDVIEIDAAS-----NTS---VDDIKVILENSCYLPISSKFKVYIIDEVHMLSNS-------------AFNALLK 138 (491)
T ss_pred hccCCCCEEEEeccc-----CCC---HHHHHHHHHHHHhccccCCceEEEEeChHhCCHH-------------HHHHHHH
Confidence 23333321 111 1223344333322222346789999999999865 7899999
Q ss_pred HHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 141 LIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 141 ~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
.||+-. .. +.+|.+++. ...+.+.+++|+ ..+.|..++.+.
T Consensus 139 ~LEePp-------------~~--v~fIlatte-------~~Kl~~tI~SRc-~~~~f~~l~~~e 179 (491)
T PRK14964 139 TLEEPA-------------PH--VKFILATTE-------VKKIPVTIISRC-QRFDLQKIPTDK 179 (491)
T ss_pred HHhCCC-------------CC--eEEEEEeCC-------hHHHHHHHHHhh-eeeecccccHHH
Confidence 999621 22 333333333 357999999986 336776666543
No 109
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.54 E-value=1.4e-14 Score=133.73 Aligned_cols=156 Identities=21% Similarity=0.273 Sum_probs=102.1
Q ss_pred eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh----------CCCeEEeccCc
Q psy5910 6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII----------NVPIIVVDATS 75 (225)
Q Consensus 6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~----------~~~~~~~~~~~ 75 (225)
.++|+++.++++.+.+.. ....+++|+||||||||++++.++..+ +.+++.++.+.
T Consensus 174 ~~igr~~ei~~~~~~l~r--------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~ 239 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGA 239 (852)
T ss_pred cCCCcHHHHHHHHHHHhc--------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHH
Confidence 479999988888776511 234588999999999999999999876 56677777665
Q ss_pred cc-ccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCcccccc
Q psy5910 76 FT-EAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAE 154 (225)
Q Consensus 76 ~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~ 154 (225)
+. ...|.|.- +..+..++.... ....+.||||||++.+...+... ....+.+.|...+....
T Consensus 240 l~a~~~~~g~~-e~~l~~~l~~~~---~~~~~~ILfIDEih~l~~~g~~~-----~~~d~~~~Lk~~l~~g~-------- 302 (852)
T TIGR03346 240 LIAGAKYRGEF-EERLKAVLNEVT---KSEGQIILFIDELHTLVGAGKAE-----GAMDAGNMLKPALARGE-------- 302 (852)
T ss_pred HhhcchhhhhH-HHHHHHHHHHHH---hcCCCeEEEeccHHHhhcCCCCc-----chhHHHHHhchhhhcCc--------
Confidence 53 22466643 455666665431 11357899999999998653211 11235555655554321
Q ss_pred ccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 155 KKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 155 ~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
+.+|++|+..-. ..+-.+|+++.|||.. |.++.|+.++
T Consensus 303 ---------i~~IgaTt~~e~--r~~~~~d~al~rRf~~-i~v~~p~~~~ 340 (852)
T TIGR03346 303 ---------LHCIGATTLDEY--RKYIEKDAALERRFQP-VFVDEPTVED 340 (852)
T ss_pred ---------eEEEEeCcHHHH--HHHhhcCHHHHhcCCE-EEeCCCCHHH
Confidence 777887776100 0002479999999964 6777777655
No 110
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.54 E-value=3.3e-14 Score=117.90 Aligned_cols=166 Identities=19% Similarity=0.241 Sum_probs=98.3
Q ss_pred eechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccC---
Q psy5910 7 IIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAG--- 80 (225)
Q Consensus 7 i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~--- 80 (225)
++|.+.+++.+.+.+.. +.....+|||+|++||||+++|++|+... +.||+.++|..+.+..
T Consensus 1 liG~S~~m~~~~~~~~~------------~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~ 68 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSR------------LAPLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDS 68 (329)
T ss_pred CCcCCHHHHHHHHHHHH------------HhCCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHH
Confidence 46777777777665521 22344689999999999999999999877 4789999998764310
Q ss_pred -ccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCC
Q psy5910 81 -YVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPS 159 (225)
Q Consensus 81 -~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~ 159 (225)
..|.. ...+........+.+..+.+++|||||++.+... +|..|+.+|+..... ..++.....
T Consensus 69 ~lfG~~-~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~~-------------~Q~~Ll~~l~~~~~~--~~g~~~~~~ 132 (329)
T TIGR02974 69 ELFGHE-AGAFTGAQKRHQGRFERADGGTLFLDELATASLL-------------VQEKLLRVIEYGEFE--RVGGSQTLQ 132 (329)
T ss_pred HHhccc-cccccCcccccCCchhhCCCCEEEeCChHhCCHH-------------HHHHHHHHHHcCcEE--ecCCCceec
Confidence 00110 0000000001123345568999999999999988 899999999864321 111111112
Q ss_pred CCCceeEEecCcceeeccCccccHHHHHHhhcccc-cccccccc
Q psy5910 160 QNPQVFNIDTTNILFIAGGAFSGIENFIINRINQE-TNFLEKLN 202 (225)
Q Consensus 160 ~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~-i~~~~~~~ 202 (225)
.+ +.+|++|+.-.........+.+.+..||... |..|+-.+
T Consensus 133 ~~--~RiI~at~~~l~~~~~~g~fr~dL~~rl~~~~i~lPpLRe 174 (329)
T TIGR02974 133 VD--VRLVCATNADLPALAAEGRFRADLLDRLAFDVITLPPLRE 174 (329)
T ss_pred cc--eEEEEechhhHHHHhhcCchHHHHHHHhcchhcCCCchhh
Confidence 22 7888888772100000112345566666443 55555443
No 111
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=3.3e-14 Score=123.31 Aligned_cols=151 Identities=24% Similarity=0.319 Sum_probs=91.0
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEe------------c
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVV------------D 72 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~------------~ 72 (225)
+.++||+++++.|..++... .-...+||+||+|||||++|+.+|+.+++..... +
T Consensus 21 ~dliGq~~vv~~L~~ai~~~-------------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~ 87 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILND-------------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTN 87 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcC-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChH
Confidence 35699999999887765211 1124788999999999999999999997632110 0
Q ss_pred cCcccc---cC---ccC--CcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhc
Q psy5910 73 ATSFTE---AG---YVG--DDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEG 144 (225)
Q Consensus 73 ~~~~~~---~~---~~g--~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~ 144 (225)
|..+.. .. ..+ ......++.++..+..........|++|||++.+... .++.|++.|++
T Consensus 88 C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~-------------a~naLLk~LEe 154 (507)
T PRK06645 88 CISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKG-------------AFNALLKTLEE 154 (507)
T ss_pred HHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHH-------------HHHHHHHHHhh
Confidence 000000 00 000 0012233444444322222346689999999999765 78999999985
Q ss_pred CCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 145 VNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
.. .. +++|.+++. ...+++++++|+ ..+.|..++.++
T Consensus 155 pp-------------~~--~vfI~aTte-------~~kI~~tI~SRc-~~~ef~~ls~~e 191 (507)
T PRK06645 155 PP-------------PH--IIFIFATTE-------VQKIPATIISRC-QRYDLRRLSFEE 191 (507)
T ss_pred cC-------------CC--EEEEEEeCC-------hHHhhHHHHhcc-eEEEccCCCHHH
Confidence 21 12 343333333 357899999987 346676666543
No 112
>PRK04195 replication factor C large subunit; Provisional
Probab=99.53 E-value=2.1e-14 Score=125.16 Aligned_cols=147 Identities=23% Similarity=0.278 Sum_probs=95.3
Q ss_pred eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCc
Q psy5910 6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDD 85 (225)
Q Consensus 6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~ 85 (225)
.++|++++++.|..++..+..+ .+.+++||+||||||||++|+++|+.++.+++.+++++...
T Consensus 15 dlvg~~~~~~~l~~~l~~~~~g----------~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~------- 77 (482)
T PRK04195 15 DVVGNEKAKEQLREWIESWLKG----------KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT------- 77 (482)
T ss_pred HhcCCHHHHHHHHHHHHHHhcC----------CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc-------
Confidence 3799999999998877433211 12468999999999999999999999999999998876532
Q ss_pred HHHHHHHHHHhcch--hhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCc
Q psy5910 86 VESIIQKLLHECDY--DVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQ 163 (225)
Q Consensus 86 ~~~~~~~~~~~~~~--~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~ 163 (225)
...+......... .+....+.+|+|||+|.+....+ ...++.|+..++...
T Consensus 78 -~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d---------~~~~~aL~~~l~~~~----------------- 130 (482)
T PRK04195 78 -ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED---------RGGARAILELIKKAK----------------- 130 (482)
T ss_pred -HHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc---------hhHHHHHHHHHHcCC-----------------
Confidence 1122222222110 00012567999999999875321 125678888887421
Q ss_pred eeEEecCcceeeccCccccHHH-HHHhhcccccccccccccc
Q psy5910 164 VFNIDTTNILFIAGGAFSGIEN-FIINRINQETNFLEKLNNN 204 (225)
Q Consensus 164 ~~~i~ttn~~~i~~~~~~~l~~-al~~Rf~~~i~~~~~~~~~ 204 (225)
..+|.++|. +..++. .+++| ...|.|+.|+.++
T Consensus 131 ~~iIli~n~-------~~~~~~k~Lrsr-~~~I~f~~~~~~~ 164 (482)
T PRK04195 131 QPIILTAND-------PYDPSLRELRNA-CLMIEFKRLSTRS 164 (482)
T ss_pred CCEEEeccC-------ccccchhhHhcc-ceEEEecCCCHHH
Confidence 334445555 225555 55554 4458888887765
No 113
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.52 E-value=2.2e-14 Score=124.40 Aligned_cols=165 Identities=18% Similarity=0.258 Sum_probs=99.7
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCC--eEEeccCcccc----
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVP--IIVVDATSFTE---- 78 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~--~~~~~~~~~~~---- 78 (225)
+.|+||+.+++.+..++ ....+++|+||||||||++++.++..+... -..+....+.+
T Consensus 192 ~dv~Gq~~~~~al~~aa----------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~ 255 (499)
T TIGR00368 192 KDIKGQQHAKRALEIAA----------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGK 255 (499)
T ss_pred HHhcCcHHHHhhhhhhc----------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhh
Confidence 34688888877776655 334578999999999999999999765210 01111111100
Q ss_pred ---------cCccC----CcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcC
Q psy5910 79 ---------AGYVG----DDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGV 145 (225)
Q Consensus 79 ---------~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~ 145 (225)
..|.- ......+........+.+..+.++++||||++.+.+. +++.|++.|+..
T Consensus 256 ~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~~~~-------------~~~~L~~~LE~~ 322 (499)
T TIGR00368 256 LIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHNGVLFLDELPEFKRS-------------VLDALREPIEDG 322 (499)
T ss_pred hccccccccCCccccccccchhhhhCCccccchhhhhccCCCeEecCChhhCCHH-------------HHHHHHHHHHcC
Confidence 00000 0000000000001123445678899999999998877 899999999876
Q ss_pred CcCccccccccCCCCCCceeEEecCcce---e------eccCcc-------ccHHHHHHhhcccccccccc
Q psy5910 146 NLSITSLAEKKNPSQNPQVFNIDTTNIL---F------IAGGAF-------SGIENFIINRINQETNFLEK 200 (225)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~i~ttn~~---~------i~~~~~-------~~l~~al~~Rf~~~i~~~~~ 200 (225)
...+...+.......+ +.+|+++|.- + -|++++ ..+..++++|||..+..+.+
T Consensus 323 ~v~i~r~g~~~~~pa~--frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~ 391 (499)
T TIGR00368 323 SISISRASAKIFYPAR--FQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLL 391 (499)
T ss_pred cEEEEecCcceeccCC--eEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCC
Confidence 5544443332222233 8999999963 1 133332 35889999999999766654
No 114
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=4.2e-14 Score=124.49 Aligned_cols=147 Identities=20% Similarity=0.221 Sum_probs=90.0
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCc-EEEEcCCCCcHHHHHHHHHHHhCCCe-------E------E
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSN-ILLVGPTGCGKTLMVKTLAKIINVPI-------I------V 70 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-vLl~Gp~GtGKT~la~~ia~~~~~~~-------~------~ 70 (225)
+.|+||+++++.|...+.. ....| +||+||+|||||++|+.+|+.+++.- - .
T Consensus 13 ~eivGq~~i~~~L~~~i~~--------------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~ 78 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDA--------------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVA 78 (584)
T ss_pred HHhcCcHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHH
Confidence 3568999999999887721 11235 57999999999999999999886521 0 0
Q ss_pred ecc-----CcccccCccCCc--HHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHh
Q psy5910 71 VDA-----TSFTEAGYVGDD--VESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIE 143 (225)
Q Consensus 71 ~~~-----~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~ 143 (225)
++. .++.. +.+.. ....++.+..............|++|||++.+... .+++|++.|+
T Consensus 79 i~~~~~~~~dvie--idaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~-------------A~NALLK~LE 143 (584)
T PRK14952 79 LAPNGPGSIDVVE--LDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTA-------------GFNALLKIVE 143 (584)
T ss_pred hhcccCCCceEEE--eccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHH-------------HHHHHHHHHh
Confidence 000 00000 11110 01222333322221112346679999999999866 7999999999
Q ss_pred cCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhccccccccccccc
Q psy5910 144 GVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNN 203 (225)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~ 203 (225)
+-. .+ +++|.+++. +..+.+.+++|. ..+.|..+..+
T Consensus 144 Epp-------------~~--~~fIL~tte-------~~kll~TI~SRc-~~~~F~~l~~~ 180 (584)
T PRK14952 144 EPP-------------EH--LIFIFATTE-------PEKVLPTIRSRT-HHYPFRLLPPR 180 (584)
T ss_pred cCC-------------CC--eEEEEEeCC-------hHhhHHHHHHhc-eEEEeeCCCHH
Confidence 622 22 444444433 358899999984 45777666554
No 115
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=4.2e-14 Score=123.48 Aligned_cols=143 Identities=23% Similarity=0.312 Sum_probs=88.6
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCC-----------------
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVP----------------- 67 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~----------------- 67 (225)
+.|+||+++++.|...+... .....+||+||+|||||++|+.+|+.+++.
T Consensus 16 ~diiGq~~~v~~L~~~i~~~-------------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i 82 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQ-------------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAI 82 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcC-------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHH
Confidence 34689999999988777211 011246799999999999999999988642
Q ss_pred -------eEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHH
Q psy5910 68 -------IIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLK 140 (225)
Q Consensus 68 -------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~ 140 (225)
++.+++. ...|. ..++.+..............|++|||+|++... .++.|++
T Consensus 83 ~~~~~~dlieidaa-----s~~gv---d~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~-------------a~naLLK 141 (546)
T PRK14957 83 NNNSFIDLIEIDAA-----SRTGV---EETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQ-------------SFNALLK 141 (546)
T ss_pred hcCCCCceEEeecc-----cccCH---HHHHHHHHHHHhhhhcCCcEEEEEechhhccHH-------------HHHHHHH
Confidence 1111111 01111 112333333221112345679999999999866 7999999
Q ss_pred HHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 141 LIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 141 ~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
.||+.. .. ..+++.|++. ..+.+.+++|+ ..+.|..++.+.
T Consensus 142 ~LEepp-------------~~-v~fIL~Ttd~--------~kil~tI~SRc-~~~~f~~Ls~~e 182 (546)
T PRK14957 142 TLEEPP-------------EY-VKFILATTDY--------HKIPVTILSRC-IQLHLKHISQAD 182 (546)
T ss_pred HHhcCC-------------CC-ceEEEEECCh--------hhhhhhHHHhe-eeEEeCCCCHHH
Confidence 999631 11 0344444443 46777888886 446676665543
No 116
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=6.1e-14 Score=122.83 Aligned_cols=142 Identities=32% Similarity=0.393 Sum_probs=91.0
Q ss_pred eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCC------------------
Q psy5910 6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVP------------------ 67 (225)
Q Consensus 6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~------------------ 67 (225)
.++||+.+++.+..++... .....+||+||+|||||++|+.+|+.+.+.
T Consensus 17 dIIGQe~iv~~L~~aI~~~-------------rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~ 83 (605)
T PRK05896 17 QIIGQELIKKILVNAILNN-------------KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESIN 83 (605)
T ss_pred HhcCcHHHHHHHHHHHHcC-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHH
Confidence 4689999999998866211 111358899999999999999999998542
Q ss_pred ------eEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHH
Q psy5910 68 ------IIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKL 141 (225)
Q Consensus 68 ------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~ 141 (225)
++.+++.. ..| ...++.+..............|++|||++.+... .+++|+..
T Consensus 84 ~~~h~DiieIdaas-----~ig---Vd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~-------------A~NaLLKt 142 (605)
T PRK05896 84 TNQSVDIVELDAAS-----NNG---VDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTS-------------AWNALLKT 142 (605)
T ss_pred cCCCCceEEecccc-----ccC---HHHHHHHHHHHHhchhhCCcEEEEEechHhCCHH-------------HHHHHHHH
Confidence 11111110 011 1123334333221112235679999999999755 78999999
Q ss_pred HhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 142 IEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 142 l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
|++. ... .++|.+++. +..+.+++++|+. .+.|..++.+.
T Consensus 143 LEEP-------------p~~--tvfIL~Tt~-------~~KLl~TI~SRcq-~ieF~~Ls~~e 182 (605)
T PRK05896 143 LEEP-------------PKH--VVFIFATTE-------FQKIPLTIISRCQ-RYNFKKLNNSE 182 (605)
T ss_pred HHhC-------------CCc--EEEEEECCC-------hHhhhHHHHhhhh-hcccCCCCHHH
Confidence 9962 222 444444443 4689999999964 57887776654
No 117
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.52 E-value=9.2e-14 Score=101.32 Aligned_cols=145 Identities=26% Similarity=0.387 Sum_probs=88.3
Q ss_pred chhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccCccCCc
Q psy5910 9 GQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAGYVGDD 85 (225)
Q Consensus 9 G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~~~g~~ 85 (225)
|++.++..+...+.. ...++++++||||||||++++.+++.+ +.+++.+++...... ...
T Consensus 2 ~~~~~~~~i~~~~~~--------------~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~-~~~-- 64 (151)
T cd00009 2 GQEEAIEALREALEL--------------PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEG-LVV-- 64 (151)
T ss_pred chHHHHHHHHHHHhC--------------CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhh-hHH--
Confidence 566667777665511 124578899999999999999999998 788888888665321 110
Q ss_pred HHHHHHH-HHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910 86 VESIIQK-LLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV 164 (225)
Q Consensus 86 ~~~~~~~-~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~ 164 (225)
...... .............+.++++||++.+... ....++..++...... ..... +
T Consensus 65 -~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~~-------------~~~~~~~~i~~~~~~~-------~~~~~--~ 121 (151)
T cd00009 65 -AELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSRG-------------AQNALLRVLETLNDLR-------IDREN--V 121 (151)
T ss_pred -HHHhhhhhHhHHHHhhccCCCeEEEEeChhhhhHH-------------HHHHHHHHHHhcCcee-------ccCCC--e
Confidence 100000 0000001112346799999999998544 4567777776532110 00112 6
Q ss_pred eEEecCcceeeccCccccHHHHHHhhcccccccc
Q psy5910 165 FNIDTTNILFIAGGAFSGIENFIINRINQETNFL 198 (225)
Q Consensus 165 ~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~ 198 (225)
.+|.++|.... ..+++.+.+||+..+.++
T Consensus 122 ~ii~~~~~~~~-----~~~~~~~~~r~~~~i~~~ 150 (151)
T cd00009 122 RVIGATNRPLL-----GDLDRALYDRLDIRIVIP 150 (151)
T ss_pred EEEEecCcccc-----CCcChhHHhhhccEeecC
Confidence 67777766211 267888999998666654
No 118
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.52 E-value=4.6e-14 Score=116.81 Aligned_cols=143 Identities=21% Similarity=0.229 Sum_probs=93.6
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVG 83 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g 83 (225)
+.++|++++++.+...+.. ...++++ ++||||+|||++|+++++.++.++..+++.. . ..
T Consensus 21 ~~~~~~~~~~~~l~~~~~~--------------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~--~~-- 81 (316)
T PHA02544 21 DECILPAADKETFKSIVKK--------------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-C--RI-- 81 (316)
T ss_pred HHhcCcHHHHHHHHHHHhc--------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-c--cH--
Confidence 3468999999988877621 1112444 6999999999999999999988888888865 1 10
Q ss_pred CcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCc
Q psy5910 84 DDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQ 163 (225)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~ 163 (225)
......+........ ....+.+++|||+|.+... ..++.|...++... .+
T Consensus 82 ~~i~~~l~~~~~~~~---~~~~~~vliiDe~d~l~~~------------~~~~~L~~~le~~~-------------~~-- 131 (316)
T PHA02544 82 DFVRNRLTRFASTVS---LTGGGKVIIIDEFDRLGLA------------DAQRHLRSFMEAYS-------------KN-- 131 (316)
T ss_pred HHHHHHHHHHHHhhc---ccCCCeEEEEECcccccCH------------HHHHHHHHHHHhcC-------------CC--
Confidence 011111211111110 1135789999999988432 15677888887532 11
Q ss_pred eeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 164 VFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 164 ~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
..+|.++|. ...+++++++||. .+.|+.|+.+.
T Consensus 132 ~~~Ilt~n~-------~~~l~~~l~sR~~-~i~~~~p~~~~ 164 (316)
T PHA02544 132 CSFIITANN-------KNGIIEPLRSRCR-VIDFGVPTKEE 164 (316)
T ss_pred ceEEEEcCC-------hhhchHHHHhhce-EEEeCCCCHHH
Confidence 556667766 5688999999984 47777776553
No 119
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=4.3e-14 Score=123.85 Aligned_cols=149 Identities=21% Similarity=0.265 Sum_probs=89.4
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCc-EEEEcCCCCcHHHHHHHHHHHhCCCeEE--eccC-------
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSN-ILLVGPTGCGKTLMVKTLAKIINVPIIV--VDAT------- 74 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-vLl~Gp~GtGKT~la~~ia~~~~~~~~~--~~~~------- 74 (225)
+.|+||+++++.|..++... ...+ +||+||+|||||++|+.+|+.+++.... -.|+
T Consensus 16 ~divGq~~v~~~L~~~i~~~--------------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~ 81 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQ--------------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLE 81 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcC--------------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Confidence 35689999999998876211 1124 6799999999999999999999663110 0110
Q ss_pred -------ccccc-CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCC
Q psy5910 75 -------SFTEA-GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVN 146 (225)
Q Consensus 75 -------~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~ 146 (225)
++... .-.... ...++.+...+..........|++|||+|.+... .++.|++.|++..
T Consensus 82 i~~~~~~d~~ei~~~~~~~-vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~-------------a~naLLK~LEepp 147 (527)
T PRK14969 82 IDSGRFVDLIEVDAASNTQ-VDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKS-------------AFNAMLKTLEEPP 147 (527)
T ss_pred HhcCCCCceeEeeccccCC-HHHHHHHHHHHhhCcccCCceEEEEcCcccCCHH-------------HHHHHHHHHhCCC
Confidence 00000 000011 1223444433322112335679999999999866 7899999998621
Q ss_pred cCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 147 LSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
.. +.+|.+|+. +..+.+.+++|+ ..+.|..++.+.
T Consensus 148 -------------~~--~~fIL~t~d-------~~kil~tI~SRc-~~~~f~~l~~~~ 182 (527)
T PRK14969 148 -------------EH--VKFILATTD-------PQKIPVTVLSRC-LQFNLKQMPPPL 182 (527)
T ss_pred -------------CC--EEEEEEeCC-------hhhCchhHHHHH-HHHhcCCCCHHH
Confidence 22 333333332 346777788885 447777776653
No 120
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=6.9e-14 Score=123.03 Aligned_cols=142 Identities=22% Similarity=0.293 Sum_probs=90.1
Q ss_pred eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCC------------------
Q psy5910 6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVP------------------ 67 (225)
Q Consensus 6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~------------------ 67 (225)
.|+||+++++.|..++... .-...+||+||+|||||++|+.+|+.+.+.
T Consensus 17 dIiGQe~v~~~L~~ai~~~-------------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~ 83 (624)
T PRK14959 17 EVAGQETVKAILSRAAQEN-------------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVT 83 (624)
T ss_pred HhcCCHHHHHHHHHHHHcC-------------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHh
Confidence 4589999999998877211 012368899999999999999999999653
Q ss_pred ------eEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHH
Q psy5910 68 ------IIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKL 141 (225)
Q Consensus 68 ------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~ 141 (225)
++.+++.. ..+ + ..++.+.+............|++|||++.+... .++.|++.
T Consensus 84 ~g~hpDv~eId~a~-----~~~--I-d~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~-------------a~naLLk~ 142 (624)
T PRK14959 84 QGMHVDVVEIDGAS-----NRG--I-DDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTRE-------------AFNALLKT 142 (624)
T ss_pred cCCCCceEEEeccc-----ccC--H-HHHHHHHHHHHhhhhcCCceEEEEEChHhCCHH-------------HHHHHHHH
Confidence 22222110 011 1 112222222111112235679999999999866 78999999
Q ss_pred HhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 142 IEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 142 l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
|++.. .+ +++|.+++. ...+.+.+++|+. .+.|..++.++
T Consensus 143 LEEP~-------------~~--~ifILaTt~-------~~kll~TI~SRcq-~i~F~pLs~~e 182 (624)
T PRK14959 143 LEEPP-------------AR--VTFVLATTE-------PHKFPVTIVSRCQ-HFTFTRLSEAG 182 (624)
T ss_pred hhccC-------------CC--EEEEEecCC-------hhhhhHHHHhhhh-ccccCCCCHHH
Confidence 98621 12 444444444 4578888999863 47787776654
No 121
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.51 E-value=6e-14 Score=127.83 Aligned_cols=147 Identities=21% Similarity=0.208 Sum_probs=88.7
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCc-EEEEcCCCCcHHHHHHHHHHHhCCCeEE--eccC-------
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSN-ILLVGPTGCGKTLMVKTLAKIINVPIIV--VDAT------- 74 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-vLl~Gp~GtGKT~la~~ia~~~~~~~~~--~~~~------- 74 (225)
+.|+||+++++.|...+.. ....| +||+||+|||||++|+.+++.+++.-.. -.|.
T Consensus 15 ~eiiGqe~v~~~L~~~i~~--------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~ 80 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDS--------------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVA 80 (824)
T ss_pred HHhcCcHHHHHHHHHHHHh--------------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHH
Confidence 3568999999999887721 11134 6899999999999999999999752100 0000
Q ss_pred ---------cccccCccCCc--HHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHh
Q psy5910 75 ---------SFTEAGYVGDD--VESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIE 143 (225)
Q Consensus 75 ---------~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~ 143 (225)
++.. +.+.. ....++.+..............|+||||+|.|... .++.|++.||
T Consensus 81 ~~~g~~~~~dv~e--idaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~-------------a~NaLLK~LE 145 (824)
T PRK07764 81 LAPGGPGSLDVTE--IDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQ-------------GFNALLKIVE 145 (824)
T ss_pred HHcCCCCCCcEEE--ecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHH-------------HHHHHHHHHh
Confidence 0100 11100 01122333222211112346679999999999976 7999999999
Q ss_pred cCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhccccccccccccc
Q psy5910 144 GVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNN 203 (225)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~ 203 (225)
+.. .+ +++|.+++. .+.|.+.|++|+ ..+.|..+..+
T Consensus 146 EpP-------------~~--~~fIl~tt~-------~~kLl~TIrSRc-~~v~F~~l~~~ 182 (824)
T PRK07764 146 EPP-------------EH--LKFIFATTE-------PDKVIGTIRSRT-HHYPFRLVPPE 182 (824)
T ss_pred CCC-------------CC--eEEEEEeCC-------hhhhhHHHHhhe-eEEEeeCCCHH
Confidence 632 22 344433333 356888899985 33566555443
No 122
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.50 E-value=5.9e-14 Score=124.20 Aligned_cols=149 Identities=20% Similarity=0.229 Sum_probs=89.9
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEE--eccC--------
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIV--VDAT-------- 74 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~--~~~~-------- 74 (225)
+.|+||+++++.|..++... .-...+||+||+|||||++|+.+++.+++.-.. ..|.
T Consensus 16 ddIIGQe~vv~~L~~ai~~~-------------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i 82 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEG-------------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQI 82 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcC-------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHH
Confidence 45799999999998877211 111357899999999999999999998653110 0010
Q ss_pred ------cccc-cCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCc
Q psy5910 75 ------SFTE-AGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNL 147 (225)
Q Consensus 75 ------~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~ 147 (225)
++.. ....... ...++.++.............|++|||++.+... .++.|++.|+...
T Consensus 83 ~~g~~~DvlEidaAs~~g-Vd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~-------------A~NALLKtLEEPp- 147 (709)
T PRK08691 83 DAGRYVDLLEIDAASNTG-IDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKS-------------AFNAMLKTLEEPP- 147 (709)
T ss_pred hccCccceEEEeccccCC-HHHHHHHHHHHHhhhhhCCcEEEEEECccccCHH-------------HHHHHHHHHHhCC-
Confidence 0000 0000111 1234444443322212235679999999998755 6899999998621
Q ss_pred CccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhccccccccccccc
Q psy5910 148 SITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNN 203 (225)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~ 203 (225)
.. +.+|.+++. ...+...+++|+ ..+.|..+..+
T Consensus 148 ------------~~--v~fILaTtd-------~~kL~~TIrSRC-~~f~f~~Ls~e 181 (709)
T PRK08691 148 ------------EH--VKFILATTD-------PHKVPVTVLSRC-LQFVLRNMTAQ 181 (709)
T ss_pred ------------CC--cEEEEEeCC-------ccccchHHHHHH-hhhhcCCCCHH
Confidence 22 444444444 447888888886 33555555554
No 123
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.50 E-value=5.2e-14 Score=122.92 Aligned_cols=137 Identities=20% Similarity=0.308 Sum_probs=89.5
Q ss_pred eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHH-----------hCCCeEEeccC
Q psy5910 6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKI-----------INVPIIVVDAT 74 (225)
Q Consensus 6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~-----------~~~~~~~~~~~ 74 (225)
.++|++.+++.+.+.+. .+.....+|||+|++||||+++|++|++. .+.||+.+||.
T Consensus 220 ~iiG~S~~m~~~~~~i~------------~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCa 287 (538)
T PRK15424 220 DLLGQSPQMEQVRQTIL------------LYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCG 287 (538)
T ss_pred heeeCCHHHHHHHHHHH------------HHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecc
Confidence 47899888888877662 12234468999999999999999999987 36799999998
Q ss_pred cccccC----ccCCcHHHHHHHHHH-hcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCc
Q psy5910 75 SFTEAG----YVGDDVESIIQKLLH-ECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSI 149 (225)
Q Consensus 75 ~~~~~~----~~g~~~~~~~~~~~~-~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~ 149 (225)
.+.+.. ..|.. ...+....+ ...+.+..+.+++|||||++.+... +|..|+++|+.....
T Consensus 288 al~e~lleseLFG~~-~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~-------------~Q~kLl~~L~e~~~~- 352 (538)
T PRK15424 288 AIAESLLEAELFGYE-EGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLP-------------LQTRLLRVLEEKEVT- 352 (538)
T ss_pred cCChhhHHHHhcCCc-cccccCccccccCCchhccCCCEEEEcChHhCCHH-------------HHHHHHhhhhcCeEE-
Confidence 874311 11111 000000000 0113344568899999999999988 899999999864322
Q ss_pred cccccccCCCCCCceeEEecCcc
Q psy5910 150 TSLAEKKNPSQNPQVFNIDTTNI 172 (225)
Q Consensus 150 ~~~~~~~~~~~~~~~~~i~ttn~ 172 (225)
..++...-..+ +.+|++||.
T Consensus 353 -r~G~~~~~~~d--vRiIaat~~ 372 (538)
T PRK15424 353 -RVGGHQPVPVD--VRVISATHC 372 (538)
T ss_pred -ecCCCceeccc--eEEEEecCC
Confidence 11111111122 788888887
No 124
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=5.8e-14 Score=122.17 Aligned_cols=141 Identities=21% Similarity=0.287 Sum_probs=88.9
Q ss_pred eeechhhHHhhheeeeEecccceEeecccceeeeCCcE-EEEcCCCCcHHHHHHHHHHHhCCC-----------------
Q psy5910 6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNI-LLVGPTGCGKTLMVKTLAKIINVP----------------- 67 (225)
Q Consensus 6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v-Ll~Gp~GtGKT~la~~ia~~~~~~----------------- 67 (225)
.|+||+++++.|...+.. ....+. ||+|||||||||+|+++++.+.+.
T Consensus 15 dvvGq~~v~~~L~~~i~~--------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~ 80 (504)
T PRK14963 15 EVVGQEHVKEVLLAALRQ--------------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVR 80 (504)
T ss_pred HhcChHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHh
Confidence 469999999999887622 112344 899999999999999999988541
Q ss_pred ------eEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHH
Q psy5910 68 ------IIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKL 141 (225)
Q Consensus 68 ------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~ 141 (225)
++.+++.. .. . ...++.+..............|++|||++.+... .++.|++.
T Consensus 81 ~~~h~dv~el~~~~-----~~--~-vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~-------------a~naLLk~ 139 (504)
T PRK14963 81 RGAHPDVLEIDAAS-----NN--S-VEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKS-------------AFNALLKT 139 (504)
T ss_pred cCCCCceEEecccc-----cC--C-HHHHHHHHHHHhhccccCCCeEEEEECccccCHH-------------HHHHHHHH
Confidence 22222211 01 1 1223333222211111235679999999988654 78999999
Q ss_pred HhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 142 IEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 142 l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
|+... .. +++|.+++. +..+.+.+++|+. .+.|..++.+.
T Consensus 140 LEep~-------------~~--t~~Il~t~~-------~~kl~~~I~SRc~-~~~f~~ls~~e 179 (504)
T PRK14963 140 LEEPP-------------EH--VIFILATTE-------PEKMPPTILSRTQ-HFRFRRLTEEE 179 (504)
T ss_pred HHhCC-------------CC--EEEEEEcCC-------hhhCChHHhcceE-EEEecCCCHHH
Confidence 98521 12 444444444 4578889998864 47777766654
No 125
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.50 E-value=8.2e-14 Score=115.56 Aligned_cols=171 Identities=19% Similarity=0.241 Sum_probs=101.9
Q ss_pred CCcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccc
Q psy5910 2 ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTE 78 (225)
Q Consensus 2 ~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~ 78 (225)
+..+.++|.+...+.+.+.+.. +.....+|||+|++||||+++|++|+... +.||+.++|..+.+
T Consensus 3 ~~~~~liG~S~~~~~~~~~i~~------------~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~ 70 (326)
T PRK11608 3 EYKDNLLGEANSFLEVLEQVSR------------LAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE 70 (326)
T ss_pred cccCccEECCHHHHHHHHHHHH------------HhCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCH
Confidence 3456789999888888776622 22344689999999999999999999876 46899999987642
Q ss_pred c----CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCcccccc
Q psy5910 79 A----GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAE 154 (225)
Q Consensus 79 ~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~ 154 (225)
. .+.|.... ..........+.+....+++|||||++.+... +|..|+.+|+..... ..++
T Consensus 71 ~~~~~~lfg~~~~-~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~~-------------~Q~~L~~~l~~~~~~--~~g~ 134 (326)
T PRK11608 71 NLLDSELFGHEAG-AFTGAQKRHPGRFERADGGTLFLDELATAPML-------------VQEKLLRVIEYGELE--RVGG 134 (326)
T ss_pred HHHHHHHcccccc-ccCCcccccCCchhccCCCeEEeCChhhCCHH-------------HHHHHHHHHhcCcEE--eCCC
Confidence 1 01111100 00000000112345568899999999999988 899999999864321 1111
Q ss_pred ccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccc-cccccccc
Q psy5910 155 KKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQE-TNFLEKLN 202 (225)
Q Consensus 155 ~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~-i~~~~~~~ 202 (225)
......+ +.+|++|+.-.........+.+.+..||... |..|+-.+
T Consensus 135 ~~~~~~~--~RiI~~s~~~l~~l~~~g~f~~dL~~~l~~~~i~lPpLRe 181 (326)
T PRK11608 135 SQPLQVN--VRLVCATNADLPAMVAEGKFRADLLDRLAFDVVQLPPLRE 181 (326)
T ss_pred Cceeecc--EEEEEeCchhHHHHHHcCCchHHHHHhcCCCEEECCChhh
Confidence 1111112 7777777762210000112445566666433 55554433
No 126
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.49 E-value=5.8e-14 Score=121.43 Aligned_cols=147 Identities=13% Similarity=0.221 Sum_probs=90.2
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhCCC--eEEeccCccc-------------ccCcc----CCcHHHHHHHHHHhcchh
Q psy5910 40 KSNILLVGPTGCGKTLMVKTLAKIINVP--IIVVDATSFT-------------EAGYV----GDDVESIIQKLLHECDYD 100 (225)
Q Consensus 40 ~~~vLl~Gp~GtGKT~la~~ia~~~~~~--~~~~~~~~~~-------------~~~~~----g~~~~~~~~~~~~~~~~~ 100 (225)
..+++|+||||||||++++.++..+... -..+....+. ..-|. ..+....+..-.....+.
T Consensus 210 G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~ 289 (506)
T PRK09862 210 GHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGE 289 (506)
T ss_pred CcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCceehhhH
Confidence 3467799999999999999999876311 0011111110 00011 000011111000011245
Q ss_pred hhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCccee------
Q psy5910 101 VELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILF------ 174 (225)
Q Consensus 101 ~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~------ 174 (225)
+..+.++++|+||++.+.+. +++.|++.|+.....+...+.......+ +.+|+|+|..-
T Consensus 290 l~~A~gGvLfLDEi~e~~~~-------------~~~~L~~~LE~g~v~I~r~g~~~~~pa~--f~lIAa~NP~pcG~~~~ 354 (506)
T PRK09862 290 ISLAHNGVLFLDELPEFERR-------------TLDALREPIESGQIHLSRTRAKITYPAR--FQLVAAMNPSPTGHYQG 354 (506)
T ss_pred hhhccCCEEecCCchhCCHH-------------HHHHHHHHHHcCcEEEecCCcceeccCC--EEEEEeecCccceecCC
Confidence 66778999999999998876 8999999998876655554443322233 99999999842
Q ss_pred -eccCcc-------ccHHHHHHhhccccccccccc
Q psy5910 175 -IAGGAF-------SGIENFIINRINQETNFLEKL 201 (225)
Q Consensus 175 -i~~~~~-------~~l~~al~~Rf~~~i~~~~~~ 201 (225)
-|.|++ ..++.++++|||..+..+.++
T Consensus 355 ~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~ 389 (506)
T PRK09862 355 NHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPP 389 (506)
T ss_pred CCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCC
Confidence 133333 358889999999987666654
No 127
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=9.7e-14 Score=123.79 Aligned_cols=151 Identities=22% Similarity=0.249 Sum_probs=93.2
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEe---ccCccc----
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVV---DATSFT---- 77 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~---~~~~~~---- 77 (225)
+.|+||+++++.|..++... .-...+||+||+|||||++|+.+|+.+.+.-... .|....
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~-------------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~ 84 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSN-------------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVN 84 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcC-------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhc
Confidence 35689999999998877211 1112468999999999999999999986632110 010000
Q ss_pred -ccC-c--cCC--cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccc
Q psy5910 78 -EAG-Y--VGD--DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITS 151 (225)
Q Consensus 78 -~~~-~--~g~--~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~ 151 (225)
... + .+. .....++.+..............|++|||++.+... .+++|++.|++.
T Consensus 85 ~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~-------------A~NALLKtLEEP------ 145 (725)
T PRK07133 85 NSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKS-------------AFNALLKTLEEP------ 145 (725)
T ss_pred CCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHH-------------HHHHHHHHhhcC------
Confidence 000 0 110 001223444443322222346679999999999866 789999999962
Q ss_pred cccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 152 LAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 152 ~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
... +++|.+++. +..+++.+++|+. .+.|..++.+.
T Consensus 146 -------P~~--tifILaTte-------~~KLl~TI~SRcq-~ieF~~L~~ee 181 (725)
T PRK07133 146 -------PKH--VIFILATTE-------VHKIPLTILSRVQ-RFNFRRISEDE 181 (725)
T ss_pred -------CCc--eEEEEEcCC-------hhhhhHHHHhhce-eEEccCCCHHH
Confidence 222 444444433 4689999999974 57787776654
No 128
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=8.7e-14 Score=122.96 Aligned_cols=141 Identities=20% Similarity=0.268 Sum_probs=86.9
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCc-EEEEcCCCCcHHHHHHHHHHHhCCC----------------
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSN-ILLVGPTGCGKTLMVKTLAKIINVP---------------- 67 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-vLl~Gp~GtGKT~la~~ia~~~~~~---------------- 67 (225)
+.|+||+++++.|...+... ...+ +||+||+|||||++|+.+|+.+++.
T Consensus 16 ~dviGQe~vv~~L~~~l~~~--------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C 81 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQ--------------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVC 81 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcC--------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCcc
Confidence 34579999999998877211 1124 5799999999999999999998752
Q ss_pred -------------eEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHH
Q psy5910 68 -------------IIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGV 134 (225)
Q Consensus 68 -------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~ 134 (225)
++.+++.. -. . ...++.+..............|++|||+|.+... .
T Consensus 82 ~~C~~i~~g~h~D~~eldaas-----~~--~-Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~-------------a 140 (618)
T PRK14951 82 QACRDIDSGRFVDYTELDAAS-----NR--G-VDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNT-------------A 140 (618)
T ss_pred HHHHHHHcCCCCceeecCccc-----cc--C-HHHHHHHHHHHHhCcccCCceEEEEEChhhCCHH-------------H
Confidence 11111110 01 1 1123334333211112234579999999999976 7
Q ss_pred HHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhccccccccccccc
Q psy5910 135 QQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNN 203 (225)
Q Consensus 135 ~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~ 203 (225)
++.|++.||+.. .. +.+|.+|+. +..+...+++|+ ..+.|...+.+
T Consensus 141 ~NaLLKtLEEPP-------------~~--~~fIL~Ttd-------~~kil~TIlSRc-~~~~f~~Ls~e 186 (618)
T PRK14951 141 FNAMLKTLEEPP-------------EY--LKFVLATTD-------PQKVPVTVLSRC-LQFNLRPMAPE 186 (618)
T ss_pred HHHHHHhcccCC-------------CC--eEEEEEECC-------chhhhHHHHHhc-eeeecCCCCHH
Confidence 899999998621 12 333333322 346788899885 44666655554
No 129
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=1e-13 Score=122.82 Aligned_cols=148 Identities=22% Similarity=0.223 Sum_probs=90.7
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEE--ecc---------
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIV--VDA--------- 73 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~--~~~--------- 73 (225)
+.|+||+++++.|...+..- .-...+||+||+|||||++|+.+++.+++.-.. -.|
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~-------------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i 82 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTG-------------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEI 82 (576)
T ss_pred HHccCcHHHHHHHHHHHHcC-------------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHH
Confidence 45699999999998876211 011246899999999999999999998653100 000
Q ss_pred -----CcccccCccCCc--HHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCC
Q psy5910 74 -----TSFTEAGYVGDD--VESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVN 146 (225)
Q Consensus 74 -----~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~ 146 (225)
.++.. +.|.+ ....++.+..............|++|||+|.+... .+++|++.||+.
T Consensus 83 ~~g~~~d~~e--id~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~-------------a~naLLk~LEep- 146 (576)
T PRK14965 83 TEGRSVDVFE--IDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTN-------------AFNALLKTLEEP- 146 (576)
T ss_pred hcCCCCCeee--eeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHH-------------HHHHHHHHHHcC-
Confidence 00100 11110 01123333333221112245679999999999866 789999999962
Q ss_pred cCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhccccccccccccc
Q psy5910 147 LSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNN 203 (225)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~ 203 (225)
..+ +.+|.+|+. +..|.+.+++|+ ..+.|..++.+
T Consensus 147 ------------p~~--~~fIl~t~~-------~~kl~~tI~SRc-~~~~f~~l~~~ 181 (576)
T PRK14965 147 ------------PPH--VKFIFATTE-------PHKVPITILSRC-QRFDFRRIPLQ 181 (576)
T ss_pred ------------CCC--eEEEEEeCC-------hhhhhHHHHHhh-hhhhcCCCCHH
Confidence 122 444444443 468999999986 34777666554
No 130
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.49 E-value=1.5e-13 Score=114.09 Aligned_cols=165 Identities=17% Similarity=0.218 Sum_probs=107.3
Q ss_pred CcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCc-------
Q psy5910 3 LDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATS------- 75 (225)
Q Consensus 3 l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~------- 75 (225)
+...++||+..+..|.... +...-+++||-|+.||||||++|+|+..+.---....|..
T Consensus 15 pf~aivGqd~lk~aL~l~a--------------v~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P 80 (423)
T COG1239 15 PFTAIVGQDPLKLALGLNA--------------VDPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDP 80 (423)
T ss_pred chhhhcCchHHHHHHhhhh--------------cccccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCCh
Confidence 3456899999998886543 1133469999999999999999999999832211111100
Q ss_pred -------------------------------ccc-cCccCC-cHHHHHHHHHHh-cchhhhhhCCCEEEEcchhhhcccc
Q psy5910 76 -------------------------------FTE-AGYVGD-DVESIIQKLLHE-CDYDVELAEQSIIYIDEIDKISKKT 121 (225)
Q Consensus 76 -------------------------------~~~-~~~~g~-~~~~~~~~~~~~-~~~~~~~~~~~vl~iDEid~l~~~~ 121 (225)
... ....|. ++.+.++.-.+. ..+.+.++.++|+|+||++.+..+
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~- 159 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDH- 159 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHH-
Confidence 000 002222 233333321111 136677889999999999999977
Q ss_pred cccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhccccccccccc
Q psy5910 122 DVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKL 201 (225)
Q Consensus 122 ~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~ 201 (225)
+++.|++.++.+...+...+......-+ |++|+|+|.- ..+|-+.|++||...+....|.
T Consensus 160 ------------lvd~LLd~aaeG~n~vereGisi~hpa~--fvligTmNPE------eGeLrpqLlDRfg~~v~~~~~~ 219 (423)
T COG1239 160 ------------LVDALLDVAAEGVNDVEREGISIRHPAR--FLLIGTMNPE------EGELRPQLLDRFGLEVDTHYPL 219 (423)
T ss_pred ------------HHHHHHHHHHhCCceeeeCceeeccCcc--EEEEeecCcc------ccccchhhHhhhcceeeccCCC
Confidence 9999999998764444444433322233 8999999981 2469999999999985544444
Q ss_pred c
Q psy5910 202 N 202 (225)
Q Consensus 202 ~ 202 (225)
.
T Consensus 220 ~ 220 (423)
T COG1239 220 D 220 (423)
T ss_pred C
Confidence 4
No 131
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.49 E-value=9.1e-14 Score=108.53 Aligned_cols=153 Identities=20% Similarity=0.304 Sum_probs=107.6
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccCc
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAGY 81 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~~ 81 (225)
+.++|.+.+++.|.+....+..+ .+..++||+|+.|||||++++++.+.+ |..++.+...++..
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G----------~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~--- 93 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQG----------LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGD--- 93 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcC----------CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhcc---
Confidence 35699999999999888666554 355699999999999999999999877 67788887766642
Q ss_pred cCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCC
Q psy5910 82 VGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQN 161 (225)
Q Consensus 82 ~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~ 161 (225)
....+..+- .....-|||+|++. +... +.-...|..+||+.-.. ...|
T Consensus 94 ----l~~l~~~l~-------~~~~kFIlf~DDLs--Fe~~----------d~~yk~LKs~LeGgle~---------~P~N 141 (249)
T PF05673_consen 94 ----LPELLDLLR-------DRPYKFILFCDDLS--FEEG----------DTEYKALKSVLEGGLEA---------RPDN 141 (249)
T ss_pred ----HHHHHHHHh-------cCCCCEEEEecCCC--CCCC----------cHHHHHHHHHhcCcccc---------CCCc
Confidence 233333321 12357799999843 2221 22467888899975433 2344
Q ss_pred CceeEEecCcceeeccCcc--------------ccHHH--HHHhhcccccccccccccc
Q psy5910 162 PQVFNIDTTNILFIAGGAF--------------SGIEN--FIINRINQETNFLEKLNNN 204 (225)
Q Consensus 162 ~~~~~i~ttn~~~i~~~~~--------------~~l~~--al~~Rf~~~i~~~~~~~~~ 204 (225)
+++.+|||+--+..... +.+++ ++-+||...|.|..|+.+.
T Consensus 142 --vliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~ 198 (249)
T PF05673_consen 142 --VLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEE 198 (249)
T ss_pred --EEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHH
Confidence 99999999976554321 12232 4566999999999999987
No 132
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.48 E-value=1.2e-13 Score=121.86 Aligned_cols=143 Identities=25% Similarity=0.328 Sum_probs=91.4
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCC-----------------
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVP----------------- 67 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~----------------- 67 (225)
+.++||+++++.|..++... .....+||+||+|||||++|+.+|+.+++.
T Consensus 16 ~~viGq~~v~~~L~~~i~~~-------------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i 82 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQG-------------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAI 82 (559)
T ss_pred HhccCcHHHHHHHHHHHHcC-------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHH
Confidence 45799999999998877321 111246799999999999999999988643
Q ss_pred -------eEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHH
Q psy5910 68 -------IIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLK 140 (225)
Q Consensus 68 -------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~ 140 (225)
++.+++.. +.. ...++.+..............|++|||++.+... .+++|++
T Consensus 83 ~~g~~~dv~eidaas-------~~~-vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~-------------a~naLLK 141 (559)
T PRK05563 83 TNGSLMDVIEIDAAS-------NNG-VDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTG-------------AFNALLK 141 (559)
T ss_pred hcCCCCCeEEeeccc-------cCC-HHHHHHHHHHHhhCcccCCeEEEEEECcccCCHH-------------HHHHHHH
Confidence 12222110 011 1223444443322222346779999999999755 7899999
Q ss_pred HHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 141 LIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 141 ~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
.|++. ... +++|.+++. +..+++.+++|+. .+.|..++.++
T Consensus 142 tLEep-------------p~~--~ifIlatt~-------~~ki~~tI~SRc~-~~~f~~~~~~e 182 (559)
T PRK05563 142 TLEEP-------------PAH--VIFILATTE-------PHKIPATILSRCQ-RFDFKRISVED 182 (559)
T ss_pred HhcCC-------------CCC--eEEEEEeCC-------hhhCcHHHHhHhe-EEecCCCCHHH
Confidence 99862 122 333333333 4578999999964 46777766543
No 133
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.48 E-value=9.3e-14 Score=125.17 Aligned_cols=138 Identities=19% Similarity=0.336 Sum_probs=89.8
Q ss_pred eeechhhHHh---hheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCcc
Q psy5910 6 HIIGQHETKK---IVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYV 82 (225)
Q Consensus 6 ~i~G~~~~~~---~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~ 82 (225)
.++||++.+. .+.+.+.. ....+++|+||||||||++|+++++..+.+++.+++.... .
T Consensus 29 d~vGQe~ii~~~~~L~~~i~~--------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~---i- 90 (725)
T PRK13341 29 EFVGQDHILGEGRLLRRAIKA--------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAG---V- 90 (725)
T ss_pred HhcCcHHHhhhhHHHHHHHhc--------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhh---h-
Confidence 3579988874 44444410 1224899999999999999999999999888888764321 0
Q ss_pred CCcHHHHHHHHHHhcchhhh-hhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCC
Q psy5910 83 GDDVESIIQKLLHECDYDVE-LAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQN 161 (225)
Q Consensus 83 g~~~~~~~~~~~~~~~~~~~-~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~ 161 (225)
.+ ++..+..+..... .....++||||+|.+... .|+.|+..++...
T Consensus 91 -~d----ir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~-------------qQdaLL~~lE~g~--------------- 137 (725)
T PRK13341 91 -KD----LRAEVDRAKERLERHGKRTILFIDEVHRFNKA-------------QQDALLPWVENGT--------------- 137 (725)
T ss_pred -HH----HHHHHHHHHHHhhhcCCceEEEEeChhhCCHH-------------HHHHHHHHhcCce---------------
Confidence 11 1222221110011 124679999999998865 6888998887522
Q ss_pred CceeEEecC--cceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 162 PQVFNIDTT--NILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 162 ~~~~~i~tt--n~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
+++|++| |. ...+++++++|. ..+.|+.++.+.
T Consensus 138 --IiLI~aTTenp-------~~~l~~aL~SR~-~v~~l~pLs~ed 172 (725)
T PRK13341 138 --ITLIGATTENP-------YFEVNKALVSRS-RLFRLKSLSDED 172 (725)
T ss_pred --EEEEEecCCCh-------HhhhhhHhhccc-cceecCCCCHHH
Confidence 5555443 33 346889999985 347777777654
No 134
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.46 E-value=6.1e-14 Score=126.88 Aligned_cols=180 Identities=15% Similarity=0.092 Sum_probs=107.0
Q ss_pred cceeechhhHHhhheeeeEecccceEee-------cc----cceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEec
Q psy5910 4 DRHIIGQHETKKIVSVGVYNHYKRLFLL-------KS----KNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVD 72 (225)
Q Consensus 4 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~-------~~----~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~ 72 (225)
.-.|+|++.+|+.|.-.+ +++.+.. ++ ..+ ....+|||+|+||||||++|+.+++...... +.+
T Consensus 449 aP~I~G~e~vK~ailL~L---~gG~~k~~~~~~~~dg~~~~~~i-RgdihVLLvGDPGTGKSqLAr~Ih~lspR~~-yts 523 (915)
T PTZ00111 449 APSIKARNNVKIGLLCQL---FSGNKNSSDFNKSPDACYKVDNF-RGIINVLLCGDPGTAKSQLLHYTHLLSPRSI-YTS 523 (915)
T ss_pred CCeEECCHHHHHHHHHHH---hcCCccccccccccccccccccc-cCCceEEEeCCCCccHHHHHHHHHHhCCccc-cCC
Confidence 456899999998885544 2222110 00 111 2234899999999999999999999764321 111
Q ss_pred cCcccccCccCCcH-HHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccc
Q psy5910 73 ATSFTEAGYVGDDV-ESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITS 151 (225)
Q Consensus 73 ~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~ 151 (225)
+......+..+... .......+....|.+..+.+++++|||++++... .|..|+++|+....++..
T Consensus 524 G~~~s~vgLTa~~~~~d~~tG~~~le~GaLvlAdgGtL~IDEidkms~~-------------~Q~aLlEaMEqqtIsI~K 590 (915)
T PTZ00111 524 GKSSSSVGLTASIKFNESDNGRAMIQPGAVVLANGGVCCIDELDKCHNE-------------SRLSLYEVMEQQTVTIAK 590 (915)
T ss_pred CCCCccccccchhhhcccccCcccccCCcEEEcCCCeEEecchhhCCHH-------------HHHHHHHHHhCCEEEEec
Confidence 11111001111000 0000000111123445567899999999999877 799999999976655544
Q ss_pred cccccCCCCCCceeEEecCcceeecc-------CccccHHHHHHhhcccc-cccccccccc
Q psy5910 152 LAEKKNPSQNPQVFNIDTTNILFIAG-------GAFSGIENFIINRINQE-TNFLEKLNNN 204 (225)
Q Consensus 152 ~~~~~~~~~~~~~~~i~ttn~~~i~~-------~~~~~l~~al~~Rf~~~-i~~~~~~~~~ 204 (225)
.+.......+ +.+|+++|..+--- .+ -++++++++|||.. +-...|+++.
T Consensus 591 aGi~~tL~ar--~rVIAAaNP~~gryd~~~s~~en-i~Lp~~LLSRFDLIf~l~D~~d~~~ 648 (915)
T PTZ00111 591 AGIVATLKAE--TAILASCNPINSRYNKNKAVIEN-INISPSLFTRFDLIYLVLDHIDQDT 648 (915)
T ss_pred CCcceecCCC--eEEEEEcCCcccccCcccCcccc-cCCChHHhhhhcEEEEecCCCChHH
Confidence 4443333344 89999999864211 12 26899999999988 5555555443
No 135
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.46 E-value=2.8e-13 Score=114.71 Aligned_cols=136 Identities=24% Similarity=0.388 Sum_probs=77.9
Q ss_pred eCCcEEEEcCCCCcHHHHHHHHHHHhCCC-------eEEeccC----cccccCc----cCCcH-HHHHHHHHHhcchhhh
Q psy5910 39 EKSNILLVGPTGCGKTLMVKTLAKIINVP-------IIVVDAT----SFTEAGY----VGDDV-ESIIQKLLHECDYDVE 102 (225)
Q Consensus 39 ~~~~vLl~Gp~GtGKT~la~~ia~~~~~~-------~~~~~~~----~~~~~~~----~g~~~-~~~~~~~~~~~~~~~~ 102 (225)
..++++|+||||||||++|+.+|..+... ++.+... ++.. ++ .|... ...+..+...+. ..
T Consensus 193 ~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~-G~rP~~vgy~~~~G~f~~~~~~A~--~~ 269 (459)
T PRK11331 193 IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQ-GYRPNGVGFRRKDGIFYNFCQQAK--EQ 269 (459)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhc-ccCCCCCCeEecCchHHHHHHHHH--hc
Confidence 35699999999999999999999988431 1222211 1110 11 11110 011222222220 01
Q ss_pred hhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCc----Ccc----ccc-cccCCCCCCceeEEecCcce
Q psy5910 103 LAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNL----SIT----SLA-EKKNPSQNPQVFNIDTTNIL 173 (225)
Q Consensus 103 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~----~~~----~~~-~~~~~~~~~~~~~i~ttn~~ 173 (225)
...+.+++|||+++....+ +...++.+||.... .++ ... .......+ +.+|+|+|.
T Consensus 270 p~~~~vliIDEINRani~k------------iFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~N--l~IIgTMNt- 334 (459)
T PRK11331 270 PEKKYVFIIDEINRANLSK------------VFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPEN--VYIIGLMNT- 334 (459)
T ss_pred ccCCcEEEEehhhccCHHH------------hhhhhhhhccccccccccceeeeccccccccccCCCC--eEEEEecCc-
Confidence 1367999999999988664 67788888874211 111 110 11222333 788888887
Q ss_pred eeccCccccHHHHHHhhcccc
Q psy5910 174 FIAGGAFSGIENFIINRINQE 194 (225)
Q Consensus 174 ~i~~~~~~~l~~al~~Rf~~~ 194 (225)
++.+...+|.|++|||...
T Consensus 335 --~Drs~~~lD~AlrRRF~fi 353 (459)
T PRK11331 335 --ADRSLAVVDYALRRRFSFI 353 (459)
T ss_pred --cccchhhccHHHHhhhheE
Confidence 2223346999999999764
No 136
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.46 E-value=1.7e-13 Score=119.68 Aligned_cols=137 Identities=18% Similarity=0.321 Sum_probs=88.8
Q ss_pred eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccC--
Q psy5910 6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAG-- 80 (225)
Q Consensus 6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~-- 80 (225)
.++|++.+++.+.+.+.. +.....+|||+|++||||+++|++|++.. +.||+.++|..+.+..
T Consensus 213 ~iiG~S~~m~~~~~~i~~------------~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~lle 280 (526)
T TIGR02329 213 DLLGASAPMEQVRALVRL------------YARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLE 280 (526)
T ss_pred heeeCCHHHHHHHHHHHH------------HhCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHH
Confidence 478998888888776621 22344699999999999999999999875 5789999998774311
Q ss_pred --ccCCcHHHHHHHHHH-hcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccC
Q psy5910 81 --YVGDDVESIIQKLLH-ECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKN 157 (225)
Q Consensus 81 --~~g~~~~~~~~~~~~-~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~ 157 (225)
+.|.. ...++...+ ...+.+....++.|||||++.+... +|..|+++|+..... ..++...
T Consensus 281 seLFG~~-~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~-------------~Q~~Ll~~L~~~~~~--r~g~~~~ 344 (526)
T TIGR02329 281 AELFGYE-EGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLP-------------LQTRLLRVLEEREVV--RVGGTEP 344 (526)
T ss_pred HHhcCCc-ccccccccccccccchhhcCCceEEecChHhCCHH-------------HHHHHHHHHhcCcEE--ecCCCce
Confidence 11111 000000000 0112334567899999999999988 899999999864322 1111111
Q ss_pred CCCCCceeEEecCcc
Q psy5910 158 PSQNPQVFNIDTTNI 172 (225)
Q Consensus 158 ~~~~~~~~~i~ttn~ 172 (225)
...+ +.+|++|+.
T Consensus 345 ~~~d--vRiIaat~~ 357 (526)
T TIGR02329 345 VPVD--VRVVAATHC 357 (526)
T ss_pred eeec--ceEEeccCC
Confidence 1112 678888877
No 137
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.46 E-value=3.1e-13 Score=113.58 Aligned_cols=147 Identities=22% Similarity=0.260 Sum_probs=89.1
Q ss_pred eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEE--ecc----------
Q psy5910 6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIV--VDA---------- 73 (225)
Q Consensus 6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~--~~~---------- 73 (225)
.++||+++++.+...+... ..+..+||+||||+|||++|+.+++.+.++-.. ..|
T Consensus 15 ~iig~~~~~~~l~~~~~~~-------------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~ 81 (355)
T TIGR02397 15 DVIGQEHIVQTLKNAIKNG-------------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEIN 81 (355)
T ss_pred hccCcHHHHHHHHHHHHcC-------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Confidence 4589999999998877210 112357899999999999999999988543100 000
Q ss_pred ----CcccccCccCC---cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCC
Q psy5910 74 ----TSFTEAGYVGD---DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVN 146 (225)
Q Consensus 74 ----~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~ 146 (225)
.++. .+.+. . ...++.++..+..........|++|||+|.+... .++.|++.++...
T Consensus 82 ~~~~~~~~--~~~~~~~~~-~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~-------------~~~~Ll~~le~~~ 145 (355)
T TIGR02397 82 SGSSLDVI--EIDAASNNG-VDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKS-------------AFNALLKTLEEPP 145 (355)
T ss_pred cCCCCCEE--EeeccccCC-HHHHHHHHHHHhcCcccCCceEEEEeChhhcCHH-------------HHHHHHHHHhCCc
Confidence 0010 01111 1 1223344443321112235579999999998754 6788999997521
Q ss_pred cCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 147 LSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
.. +++|.+++. ++.+.+++++|+. .+.|+.|+.++
T Consensus 146 -------------~~--~~lIl~~~~-------~~~l~~~l~sr~~-~~~~~~~~~~~ 180 (355)
T TIGR02397 146 -------------EH--VVFILATTE-------PHKIPATILSRCQ-RFDFKRIPLED 180 (355)
T ss_pred -------------cc--eeEEEEeCC-------HHHHHHHHHhhee-EEEcCCCCHHH
Confidence 11 444444433 4578889999973 47777776654
No 138
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.46 E-value=1.8e-13 Score=120.80 Aligned_cols=139 Identities=22% Similarity=0.363 Sum_probs=88.7
Q ss_pred cceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccC
Q psy5910 4 DRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAG 80 (225)
Q Consensus 4 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~ 80 (225)
.+.++|++.+++.+.+.+.. +.....+|||+|++||||+++|++|+... +.||+.++|..+.+..
T Consensus 195 ~~~liG~s~~~~~~~~~~~~------------~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~ 262 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARV------------VARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETL 262 (534)
T ss_pred cCceEECCHHHHHHHHHHHH------------HhCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHH
Confidence 45789999888888776621 22344689999999999999999999886 5689999998764310
Q ss_pred ----ccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCcccccccc
Q psy5910 81 ----YVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKK 156 (225)
Q Consensus 81 ----~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~ 156 (225)
..|.. ...+........+.+....+++|||||++.+... +|..|+.+|+..... ..++..
T Consensus 263 ~~~~lfg~~-~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~-------------~Q~~Ll~~l~~~~~~--~~~~~~ 326 (534)
T TIGR01817 263 LESELFGHE-KGAFTGAIAQRKGRFELADGGTLFLDEIGEISPA-------------FQAKLLRVLQEGEFE--RVGGNR 326 (534)
T ss_pred HHHHHcCCC-CCccCCCCcCCCCcccccCCCeEEEechhhCCHH-------------HHHHHHHHHhcCcEE--ECCCCc
Confidence 00110 0000000000112234567899999999999988 899999999864321 111111
Q ss_pred CCCCCCceeEEecCcc
Q psy5910 157 NPSQNPQVFNIDTTNI 172 (225)
Q Consensus 157 ~~~~~~~~~~i~ttn~ 172 (225)
.... ++.+|++|+.
T Consensus 327 ~~~~--~~riI~~s~~ 340 (534)
T TIGR01817 327 TLKV--DVRLVAATNR 340 (534)
T ss_pred eEee--cEEEEEeCCC
Confidence 1111 2677777776
No 139
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=3.5e-13 Score=114.74 Aligned_cols=150 Identities=19% Similarity=0.237 Sum_probs=88.0
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCC-cEEEEcCCCCcHHHHHHHHHHHhCCCeEE----------ecc
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKS-NILLVGPTGCGKTLMVKTLAKIINVPIIV----------VDA 73 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~-~vLl~Gp~GtGKT~la~~ia~~~~~~~~~----------~~~ 73 (225)
+.|+||+.+++.|..++... ..+ .+||+||||||||++|+++|+.+.+.-.. -.|
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~--------------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c 81 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMG--------------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPC 81 (397)
T ss_pred hhccChHHHHHHHHHHHHhC--------------CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCC
Confidence 45689999999998866210 112 48899999999999999999999663100 011
Q ss_pred Ccc------c---cc---CccCCc-H-HHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHH
Q psy5910 74 TSF------T---EA---GYVGDD-V-ESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLL 139 (225)
Q Consensus 74 ~~~------~---~~---~~~g~~-~-~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll 139 (225)
... . .. .+.|.. . ...++.+........-.....|++|||++.+... .++.|+
T Consensus 82 ~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~-------------~~~~LL 148 (397)
T PRK14955 82 GECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIA-------------AFNAFL 148 (397)
T ss_pred CCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHH-------------HHHHHH
Confidence 100 0 00 011211 0 1222333222211112235679999999999865 678999
Q ss_pred HHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 140 KLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 140 ~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
+.|+... .. .++++.+++ ...+.+++++|+. .+.|..++.+.
T Consensus 149 k~LEep~-------------~~-t~~Il~t~~--------~~kl~~tl~sR~~-~v~f~~l~~~e 190 (397)
T PRK14955 149 KTLEEPP-------------PH-AIFIFATTE--------LHKIPATIASRCQ-RFNFKRIPLEE 190 (397)
T ss_pred HHHhcCC-------------CC-eEEEEEeCC--------hHHhHHHHHHHHH-HhhcCCCCHHH
Confidence 9998521 11 033444433 3478888888863 47777665543
No 140
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.45 E-value=1.6e-13 Score=121.83 Aligned_cols=143 Identities=15% Similarity=0.213 Sum_probs=93.8
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhCC--CeEEeccCcccccCccCC-cHHHHHH-HHHHhcchhhhhhCCCEEEEcchh
Q psy5910 40 KSNILLVGPTGCGKTLMVKTLAKIINV--PIIVVDATSFTEAGYVGD-DVESIIQ-KLLHECDYDVELAEQSIIYIDEID 115 (225)
Q Consensus 40 ~~~vLl~Gp~GtGKT~la~~ia~~~~~--~~~~~~~~~~~~~~~~g~-~~~~~~~-~~~~~~~~~~~~~~~~vl~iDEid 115 (225)
-++|||.|+||||||++|+++++.++. +|+.+......+ ...|. ++...+. ..+....+.+....++++|+||++
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d-~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~ 94 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTED-RLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMAN 94 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchh-hcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchh
Confidence 469999999999999999999998854 588887643322 23332 2111111 111111344556778999999999
Q ss_pred hhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccc-
Q psy5910 116 KISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQE- 194 (225)
Q Consensus 116 ~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~- 194 (225)
.+.+. +|+.|+++|+.....+...+....-..+ +.+|+|+|..- + ...+++++++||..+
T Consensus 95 rl~~~-------------~q~~Ll~al~~g~v~i~r~G~~~~~p~~--f~lIAt~np~e-~---~g~L~~~LldRf~l~v 155 (589)
T TIGR02031 95 LLDDG-------------LSNRLLQALDEGVVIVEREGISVVHPAK--FALIATYDPAE-G---GGGLPDHLLDRLALHV 155 (589)
T ss_pred hCCHH-------------HHHHHHHHHHcCCeEEEECCCceeecCc--eEEEEecCCcc-c---cCCCCHHHHHhccCee
Confidence 99988 8999999998765444333322211123 88888888731 1 126899999999996
Q ss_pred -cccccccc
Q psy5910 195 -TNFLEKLN 202 (225)
Q Consensus 195 -i~~~~~~~ 202 (225)
+.++.+..
T Consensus 156 ~~~~~~~~~ 164 (589)
T TIGR02031 156 SLEDVASQD 164 (589)
T ss_pred ecCCCCCHH
Confidence 44444433
No 141
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.44 E-value=2.8e-13 Score=120.78 Aligned_cols=115 Identities=28% Similarity=0.385 Sum_probs=74.3
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh----------CCCeEEeccC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII----------NVPIIVVDAT 74 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~----------~~~~~~~~~~ 74 (225)
+.++||+.+++.+.+.+.. ....+++|+||||||||++|+.+++.. +.+|+.++|.
T Consensus 154 ~~iiGqs~~~~~l~~~ia~--------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~ 219 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVAS--------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGT 219 (615)
T ss_pred HhceeCcHHHHHHHHHHhc--------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEech
Confidence 3578999999887665511 123479999999999999999998766 3568889886
Q ss_pred cccc------cCccCCcHHHH---HHHHHHh------cchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHH
Q psy5910 75 SFTE------AGYVGDDVESI---IQKLLHE------CDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLL 139 (225)
Q Consensus 75 ~~~~------~~~~g~~~~~~---~~~~~~~------~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll 139 (225)
.+.. ..+.|...... ....+.. ..+.+....+++|||||++.+.+. .|..|+
T Consensus 220 ~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~-------------~Q~~Ll 286 (615)
T TIGR02903 220 TLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPL-------------LQNKLL 286 (615)
T ss_pred hccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHH-------------HHHHHH
Confidence 6521 01111110000 0011111 112233456889999999999877 799999
Q ss_pred HHHhcCC
Q psy5910 140 KLIEGVN 146 (225)
Q Consensus 140 ~~l~~~~ 146 (225)
.+|+...
T Consensus 287 ~~Le~~~ 293 (615)
T TIGR02903 287 KVLEDKR 293 (615)
T ss_pred HHHhhCe
Confidence 9998643
No 142
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=4.5e-13 Score=116.21 Aligned_cols=150 Identities=22% Similarity=0.302 Sum_probs=88.7
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCC-------eEE-eccCcc
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVP-------IIV-VDATSF 76 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~-------~~~-~~~~~~ 76 (225)
+.++||+++++.|..++... .-...+||+||+|+|||++|+.+|+.+++. +-. .+|..+
T Consensus 16 ~diiGq~~i~~~L~~~i~~~-------------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i 82 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQ-------------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEI 82 (486)
T ss_pred HHccChHHHHHHHHHHHHcC-------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHH
Confidence 34689999999998877221 011246799999999999999999998642 100 001000
Q ss_pred cc---cC---ccC---CcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCc
Q psy5910 77 TE---AG---YVG---DDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNL 147 (225)
Q Consensus 77 ~~---~~---~~g---~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~ 147 (225)
.. .. ..+ .. ...++.+..............|++|||++.+... .+++|+..|+...
T Consensus 83 ~~g~~~d~~eidaas~~g-vd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~-------------a~naLLk~LEepp- 147 (486)
T PRK14953 83 DKGSFPDLIEIDAASNRG-IDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKE-------------AFNALLKTLEEPP- 147 (486)
T ss_pred hcCCCCcEEEEeCccCCC-HHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHH-------------HHHHHHHHHhcCC-
Confidence 00 00 000 11 1112333222211112345679999999998765 6889999998521
Q ss_pred CccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 148 SITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
.. .+++++|++ ...+++++++|+. .+.|..++.++
T Consensus 148 ------------~~-~v~Il~tt~--------~~kl~~tI~SRc~-~i~f~~ls~~e 182 (486)
T PRK14953 148 ------------PR-TIFILCTTE--------YDKIPPTILSRCQ-RFIFSKPTKEQ 182 (486)
T ss_pred ------------CC-eEEEEEECC--------HHHHHHHHHHhce-EEEcCCCCHHH
Confidence 11 044444443 3578889999874 47777776554
No 143
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.44 E-value=4.5e-13 Score=115.47 Aligned_cols=148 Identities=20% Similarity=0.225 Sum_probs=89.2
Q ss_pred eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEe---------ccC--
Q psy5910 6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVV---------DAT-- 74 (225)
Q Consensus 6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~---------~~~-- 74 (225)
.|+||+++++.+...+..- .-...+||+||+|+|||++|+.+|+.+.+.-..- +|.
T Consensus 18 diiGq~~~v~~L~~~i~~~-------------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i 84 (451)
T PRK06305 18 EILGQDAVVAVLKNALRFN-------------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEI 84 (451)
T ss_pred HhcCcHHHHHHHHHHHHcC-------------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHH
Confidence 4589999999998877211 1112578999999999999999999885431000 000
Q ss_pred ------cccccCccCCcH--HHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCC
Q psy5910 75 ------SFTEAGYVGDDV--ESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVN 146 (225)
Q Consensus 75 ------~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~ 146 (225)
++. .+.|... ...++.+.+............|++|||+|.+... .++.|++.|+...
T Consensus 85 ~~~~~~d~~--~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~-------------~~n~LLk~lEep~ 149 (451)
T PRK06305 85 SSGTSLDVL--EIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKE-------------AFNSLLKTLEEPP 149 (451)
T ss_pred hcCCCCceE--EeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHH-------------HHHHHHHHhhcCC
Confidence 000 0112110 1122222222111112346789999999999865 6899999998621
Q ss_pred cCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 147 LSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
.. +++|.+++. ...+.+++++|+. .+.|..++.++
T Consensus 150 -------------~~--~~~Il~t~~-------~~kl~~tI~sRc~-~v~f~~l~~~e 184 (451)
T PRK06305 150 -------------QH--VKFFLATTE-------IHKIPGTILSRCQ-KMHLKRIPEET 184 (451)
T ss_pred -------------CC--ceEEEEeCC-------hHhcchHHHHhce-EEeCCCCCHHH
Confidence 12 444444444 4578889999863 47777666654
No 144
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=4.9e-13 Score=118.96 Aligned_cols=149 Identities=21% Similarity=0.217 Sum_probs=91.2
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEE----eccC------
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIV----VDAT------ 74 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~----~~~~------ 74 (225)
+.++||+++++.|..++... .-...+||+||+|+|||++|+++|+.+++.... -.|+
T Consensus 16 ~~liGq~~i~~~L~~~l~~~-------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~ 82 (620)
T PRK14948 16 DELVGQEAIATTLKNALISN-------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCR 82 (620)
T ss_pred hhccChHHHHHHHHHHHHcC-------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHH
Confidence 34689999999998877321 112378899999999999999999998763110 0111
Q ss_pred --------cccc-cCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcC
Q psy5910 75 --------SFTE-AGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGV 145 (225)
Q Consensus 75 --------~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~ 145 (225)
++.. ....... ...++.+...+..........|++|||+|.|... .++.|++.||+-
T Consensus 83 ~i~~g~h~D~~ei~~~~~~~-vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~-------------a~naLLK~LEeP 148 (620)
T PRK14948 83 AIAAGNALDVIEIDAASNTG-VDNIRELIERAQFAPVQARWKVYVIDECHMLSTA-------------AFNALLKTLEEP 148 (620)
T ss_pred HHhcCCCccEEEEeccccCC-HHHHHHHHHHHhhChhcCCceEEEEECccccCHH-------------HHHHHHHHHhcC
Confidence 0100 0001111 2334555544322212245679999999999865 789999999952
Q ss_pred CcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhccccccccccccc
Q psy5910 146 NLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNN 203 (225)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~ 203 (225)
... +++|.+++. +..+.+.+++|+. .+.|..+..+
T Consensus 149 -------------p~~--tvfIL~t~~-------~~~llpTIrSRc~-~~~f~~l~~~ 183 (620)
T PRK14948 149 -------------PPR--VVFVLATTD-------PQRVLPTIISRCQ-RFDFRRIPLE 183 (620)
T ss_pred -------------CcC--eEEEEEeCC-------hhhhhHHHHhhee-EEEecCCCHH
Confidence 122 444444433 4578888998863 3666555443
No 145
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.43 E-value=5.2e-13 Score=117.58 Aligned_cols=149 Identities=18% Similarity=0.188 Sum_probs=89.7
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEE--eccC--------
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIV--VDAT-------- 74 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~--~~~~-------- 74 (225)
+.|+||+++++.|..++... .-...+||+||+|+|||++|+++|+.+++.-.. ..|.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~-------------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i 82 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESN-------------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSI 82 (563)
T ss_pred HHccCcHHHHHHHHHHHHcC-------------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHH
Confidence 35689999999998877211 111247899999999999999999998653100 0000
Q ss_pred ------cccccCccCCc--HHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCC
Q psy5910 75 ------SFTEAGYVGDD--VESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVN 146 (225)
Q Consensus 75 ------~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~ 146 (225)
++. .+.|.. ....++.+..............|++|||++.+... .+++|++.|+..
T Consensus 83 ~~~~~~dv~--~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~-------------a~naLLK~LEep- 146 (563)
T PRK06647 83 DNDNSLDVI--EIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNS-------------AFNALLKTIEEP- 146 (563)
T ss_pred HcCCCCCeE--EecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHH-------------HHHHHHHhhccC-
Confidence 000 011211 01122333322211112346679999999999865 789999999852
Q ss_pred cCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 147 LSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
... +++|.+++. +..+.+++++|+. .+.|..++.+.
T Consensus 147 ------------p~~--~vfI~~tte-------~~kL~~tI~SRc~-~~~f~~l~~~e 182 (563)
T PRK06647 147 ------------PPY--IVFIFATTE-------VHKLPATIKSRCQ-HFNFRLLSLEK 182 (563)
T ss_pred ------------CCC--EEEEEecCC-------hHHhHHHHHHhce-EEEecCCCHHH
Confidence 122 444443333 3578999999964 36666665543
No 146
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=5.8e-14 Score=118.10 Aligned_cols=164 Identities=16% Similarity=0.279 Sum_probs=106.4
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCC----CeE------EeccC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINV----PII------VVDAT 74 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~----~~~------~~~~~ 74 (225)
.+|+||+.+|+.+.-+. ....++|++||||||||++|+.+...+.- .++ .+.+.
T Consensus 179 ~DV~GQ~~AKrAleiAA----------------AGgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~ 242 (490)
T COG0606 179 KDVKGQEQAKRALEIAA----------------AGGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGD 242 (490)
T ss_pred hhhcCcHHHHHHHHHHH----------------hcCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhccc
Confidence 46899999999998776 45569999999999999999998877621 011 11111
Q ss_pred ccc------ccCc--cCCcHHHHHHHHHHh----cchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHH
Q psy5910 75 SFT------EAGY--VGDDVESIIQKLLHE----CDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLI 142 (225)
Q Consensus 75 ~~~------~~~~--~g~~~~~~~~~~~~~----~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l 142 (225)
... ..-| .+.+.+ ...+..- ..+.+..+.++|+||||+-....+ +.+.|.+-|
T Consensus 243 ~~~~~~~~~~rPFr~PHHsaS--~~aLvGGG~~p~PGeIsLAH~GVLFLDElpef~~~-------------iLe~LR~PL 307 (490)
T COG0606 243 LHEGCPLKIHRPFRAPHHSAS--LAALVGGGGVPRPGEISLAHNGVLFLDELPEFKRS-------------ILEALREPL 307 (490)
T ss_pred ccccCccceeCCccCCCccch--HHHHhCCCCCCCCCceeeecCCEEEeeccchhhHH-------------HHHHHhCcc
Confidence 000 0000 111100 1111111 123445678899999998887765 889999999
Q ss_pred hcCCcCccccccccCCCCCCceeEEecCccee---------eccCcc-------ccHHHHHHhhccccccccccc
Q psy5910 143 EGVNLSITSLAEKKNPSQNPQVFNIDTTNILF---------IAGGAF-------SGIENFIINRINQETNFLEKL 201 (225)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~---------i~~~~~-------~~l~~al~~Rf~~~i~~~~~~ 201 (225)
|.....+...........+ |.+++++|.-- -|.+++ +.+...+++|||..+..+.++
T Consensus 308 E~g~i~IsRa~~~v~ypa~--Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lDRiDl~vev~~~~ 380 (490)
T COG0606 308 ENGKIIISRAGSKVTYPAR--FQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLDRIDLMVEVPRLS 380 (490)
T ss_pred ccCcEEEEEcCCeeEEeee--eEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHhhhhheecccCCC
Confidence 9877776665554433344 88899998742 233332 557889999999998877766
No 147
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.43 E-value=2.8e-13 Score=111.88 Aligned_cols=176 Identities=19% Similarity=0.175 Sum_probs=107.3
Q ss_pred CcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCC-------CeEEecc--
Q psy5910 3 LDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINV-------PIIVVDA-- 73 (225)
Q Consensus 3 l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~-------~~~~~~~-- 73 (225)
+++.++|++++++++...+.....+ ....+.-++|+|||||||||+|++|++.++. +++.+.+
T Consensus 49 F~~~~~G~~~~i~~lv~~l~~~a~g--------~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~ 120 (361)
T smart00763 49 FDHDFFGMEEAIERFVNYFKSAAQG--------LEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNG 120 (361)
T ss_pred cchhccCcHHHHHHHHHHHHHHHhc--------CCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecC
Confidence 3458999999999998766433321 1123345679999999999999999999966 7777766
Q ss_pred --Cccccc-----------------C-----ccCCcHHHHHHHHH-Hhc-------------------------------
Q psy5910 74 --TSFTEA-----------------G-----YVGDDVESIIQKLL-HEC------------------------------- 97 (225)
Q Consensus 74 --~~~~~~-----------------~-----~~g~~~~~~~~~~~-~~~------------------------------- 97 (225)
+.+.+. + +.|.- ...-+..+ ...
T Consensus 121 ~~sp~~e~Pl~l~p~~~r~~~~~~~~~~~~~~~~~l-~p~c~~~l~~e~~gd~~~~~V~~~~~s~~~~~gi~~~~P~D~~ 199 (361)
T smart00763 121 EESPMHEDPLHLFPDELREDLEDEYGIPRRRLEGDL-SPWCRKRLDEEYGGDIEKFEVVRVNFSELRRIGIGKFEPKDEN 199 (361)
T ss_pred CCCCCccCCcccCCHHHHHHHHHHhCCChhhcCCCC-CHHHHHHHHHHhCCCcceEEEEEecCCeecceEEEEECCCCCC
Confidence 222110 0 00000 00000000 000
Q ss_pred -----------------------------chhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcC
Q psy5910 98 -----------------------------DYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLS 148 (225)
Q Consensus 98 -----------------------------~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~ 148 (225)
.|.+..+.++|+-|+|+.++..+ +++.|+.++++....
T Consensus 200 ~qdi~~L~G~vd~~k~~~~~~~dp~a~~~~G~l~~aNrGi~~f~Ei~K~~~~-------------~l~~LL~~~qE~~v~ 266 (361)
T smart00763 200 NQDISELTGKVDIRKLEIYSESDPRAFSYDGALNRANRGILEFVEMFKADIK-------------FLHPLLTATQEGNIK 266 (361)
T ss_pred cccHHHHhcccCHHHhcccCCCCCeEEeccCccccccCceEEEeehhcCCHH-------------HHHHHhhhhhcceEe
Confidence 13344556789999999998877 899999999987766
Q ss_pred ccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccc-cccccccccc
Q psy5910 149 ITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQE-TNFLEKLNNN 204 (225)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~-i~~~~~~~~~ 204 (225)
++..... .+. +.++|++||..---.-......+|+++|+... +.|+.--.++
T Consensus 267 ~~~~~~~-~~~---d~liia~sNe~e~~~~~~~k~~eaf~dR~~~i~vpY~l~~~~E 319 (361)
T smart00763 267 GTGGFAM-IPI---DGLIIAHSNESEWQRFKSNKKNEALLDRIIKVKVPYCLRVSEE 319 (361)
T ss_pred cCCcccc-ccc---ceEEEEeCCHHHHhhhhccccchhhhhceEEEeCCCcCCHHHH
Confidence 5533221 111 15677778773100000024579999999865 7777666555
No 148
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.43 E-value=5.4e-13 Score=117.02 Aligned_cols=138 Identities=20% Similarity=0.361 Sum_probs=89.9
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCccccc--
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEA-- 79 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~-- 79 (225)
..++|++..++.+.+.+.. +.....+|||+|++||||+++|++|+... +.+|+.++|..+.+.
T Consensus 187 ~~iig~s~~~~~~~~~i~~------------~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 187 GEMIGQSPAMQQLKKEIEV------------VAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred CceeecCHHHHHHHHHHHH------------HhCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 3588998888888776622 22345699999999999999999999886 578999999877431
Q ss_pred --CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccC
Q psy5910 80 --GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKN 157 (225)
Q Consensus 80 --~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~ 157 (225)
.+.|.. ...+........+.+....+++|||||++.+... +|..|+++|+..... ..++...
T Consensus 255 e~~lfG~~-~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~-------------~Q~~Ll~~l~~~~~~--~~g~~~~ 318 (509)
T PRK05022 255 ESELFGHV-KGAFTGAISNRSGKFELADGGTLFLDEIGELPLA-------------LQAKLLRVLQYGEIQ--RVGSDRS 318 (509)
T ss_pred HHHhcCcc-ccccCCCcccCCcchhhcCCCEEEecChhhCCHH-------------HHHHHHHHHhcCCEe--eCCCCcc
Confidence 011110 0000000001112344568899999999999988 899999999864321 1111111
Q ss_pred CCCCCceeEEecCcc
Q psy5910 158 PSQNPQVFNIDTTNI 172 (225)
Q Consensus 158 ~~~~~~~~~i~ttn~ 172 (225)
... ++.+|++|+.
T Consensus 319 ~~~--~~RiI~~t~~ 331 (509)
T PRK05022 319 LRV--DVRVIAATNR 331 (509)
T ss_pred eec--ceEEEEecCC
Confidence 112 2788888887
No 149
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.43 E-value=3.6e-13 Score=112.33 Aligned_cols=150 Identities=23% Similarity=0.311 Sum_probs=88.3
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhC-----CCeEEeccCccccc
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIIN-----VPIIVVDATSFTEA 79 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~-----~~~~~~~~~~~~~~ 79 (225)
+.++|++++++.|...+.. ...++++|+||||||||++|+++++.+. .++..+++.++...
T Consensus 15 ~~~~g~~~~~~~L~~~~~~--------------~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~ 80 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDS--------------PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQ 80 (337)
T ss_pred HHhcCCHHHHHHHHHHHhC--------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhc
Confidence 3468999999999887621 1123789999999999999999999883 34567776554210
Q ss_pred C---------c---cCC------cHHHHHHHHHHhcchh-hhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHH
Q psy5910 80 G---------Y---VGD------DVESIIQKLLHECDYD-VELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLK 140 (225)
Q Consensus 80 ~---------~---~g~------~~~~~~~~~~~~~~~~-~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~ 140 (225)
. + .+. .....++.+.+..... .......+|+|||++.+... .++.|..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~-------------~~~~L~~ 147 (337)
T PRK12402 81 GKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRED-------------AQQALRR 147 (337)
T ss_pred chhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHH-------------HHHHHHH
Confidence 0 0 000 0011222222111000 00134579999999998755 6788888
Q ss_pred HHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 141 LIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 141 ~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
.|+.... . ..+++.+++ ...+.+.+.+|+ ..+.|..++.+.
T Consensus 148 ~le~~~~-------------~-~~~Il~~~~--------~~~~~~~L~sr~-~~v~~~~~~~~~ 188 (337)
T PRK12402 148 IMEQYSR-------------T-CRFIIATRQ--------PSKLIPPIRSRC-LPLFFRAPTDDE 188 (337)
T ss_pred HHHhccC-------------C-CeEEEEeCC--------hhhCchhhcCCc-eEEEecCCCHHH
Confidence 8875321 1 023333333 235667788885 346776666543
No 150
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.41 E-value=7.8e-13 Score=117.04 Aligned_cols=148 Identities=22% Similarity=0.233 Sum_probs=91.7
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEec-------cC---
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVD-------AT--- 74 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~-------~~--- 74 (225)
+.|+||+.+++.|...+..- .....+||+||+|+|||++|+.+|+.+++.....+ |.
T Consensus 24 ~dliGq~~~v~~L~~~~~~g-------------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~ 90 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETG-------------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGE 90 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcC-------------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccH
Confidence 45699999999998866211 11236889999999999999999999876432111 00
Q ss_pred -----------cccc---cCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHH
Q psy5910 75 -----------SFTE---AGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLK 140 (225)
Q Consensus 75 -----------~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~ 140 (225)
++.. .+..| ...++.+..............|++|||++.+... .++.|++
T Consensus 91 ~C~~i~~g~h~Dv~e~~a~s~~g---vd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~-------------a~naLLK 154 (598)
T PRK09111 91 HCQAIMEGRHVDVLEMDAASHTG---VDDIREIIESVRYRPVSARYKVYIIDEVHMLSTA-------------AFNALLK 154 (598)
T ss_pred HHHHHhcCCCCceEEecccccCC---HHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHH-------------HHHHHHH
Confidence 0000 00111 1223344333321222345679999999999865 7899999
Q ss_pred HHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 141 LIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 141 ~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
.|++.. .. +.+|.+++. .+.+.+.+++|+ ..+.|..++.+.
T Consensus 155 tLEePp-------------~~--~~fIl~tte-------~~kll~tI~SRc-q~~~f~~l~~~e 195 (598)
T PRK09111 155 TLEEPP-------------PH--VKFIFATTE-------IRKVPVTVLSRC-QRFDLRRIEADV 195 (598)
T ss_pred HHHhCC-------------CC--eEEEEEeCC-------hhhhhHHHHhhe-eEEEecCCCHHH
Confidence 998621 22 333333332 346788899886 347787777654
No 151
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.41 E-value=5.8e-13 Score=115.86 Aligned_cols=142 Identities=27% Similarity=0.345 Sum_probs=89.2
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCc-EEEEcCCCCcHHHHHHHHHHHhCCC----------------
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSN-ILLVGPTGCGKTLMVKTLAKIINVP---------------- 67 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-vLl~Gp~GtGKT~la~~ia~~~~~~---------------- 67 (225)
+.|+||+++++.|...+..- ...+ +||+||+|+|||++|+++++.+.++
T Consensus 14 deiiGqe~v~~~L~~~I~~g--------------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~ 79 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNN--------------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQS 79 (535)
T ss_pred HHccCcHHHHHHHHHHHHcC--------------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHH
Confidence 34699999999998877211 1124 5799999999999999999988431
Q ss_pred --------eEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHH
Q psy5910 68 --------IIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLL 139 (225)
Q Consensus 68 --------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll 139 (225)
++.+++.. .. . ...++.+..............|++|||++.+... .+++|+
T Consensus 80 ~~~~~h~dv~eldaas-----~~--g-Id~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~-------------A~NALL 138 (535)
T PRK08451 80 ALENRHIDIIEMDAAS-----NR--G-IDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKE-------------AFNALL 138 (535)
T ss_pred HhhcCCCeEEEecccc-----cc--C-HHHHHHHHHHHhhCcccCCeEEEEEECcccCCHH-------------HHHHHH
Confidence 11111110 00 1 1223333332211111235679999999999866 799999
Q ss_pred HHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 140 KLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 140 ~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
+.|+.. ... +.+|.+++. +..+.+++++|. ..+.|..++.+.
T Consensus 139 K~LEEp-------------p~~--t~FIL~ttd-------~~kL~~tI~SRc-~~~~F~~Ls~~e 180 (535)
T PRK08451 139 KTLEEP-------------PSY--VKFILATTD-------PLKLPATILSRT-QHFRFKQIPQNS 180 (535)
T ss_pred HHHhhc-------------CCc--eEEEEEECC-------hhhCchHHHhhc-eeEEcCCCCHHH
Confidence 999962 122 333333333 358889999994 457777776654
No 152
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.41 E-value=3.8e-13 Score=119.62 Aligned_cols=49 Identities=33% Similarity=0.610 Sum_probs=42.5
Q ss_pred CcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy5910 3 LDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVP 67 (225)
Q Consensus 3 l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~ 67 (225)
|-+.++||+++++.+..++ ....+++|+||||||||++|+++++.++..
T Consensus 16 ~~~~viG~~~a~~~l~~a~----------------~~~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 16 LIDQVIGQEEAVEIIKKAA----------------KQKRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred hHhhccCHHHHHHHHHHHH----------------HcCCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 5677899999999998877 344589999999999999999999999654
No 153
>KOG0991|consensus
Probab=99.41 E-value=3e-13 Score=104.02 Aligned_cols=109 Identities=26% Similarity=0.346 Sum_probs=76.2
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh-C----CCeEEeccCccccc
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII-N----VPIIVVDATSFTEA 79 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~-~----~~~~~~~~~~~~~~ 79 (225)
..|+|.++.++.|.... -.-+-+++++.|||||||||-+.++|+.+ | -.+..+|+++-
T Consensus 27 ~dIVGNe~tv~rl~via--------------~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASde--- 89 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIA--------------KEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDE--- 89 (333)
T ss_pred HHhhCCHHHHHHHHHHH--------------HcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccc---
Confidence 35799999998886643 11334689999999999999999999887 3 22556666553
Q ss_pred CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcC
Q psy5910 80 GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGV 145 (225)
Q Consensus 80 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~ 145 (225)
.|-++-..--++|.+....+...+..|+++||+|++... +|++|.+.||-+
T Consensus 90 --RGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~g-------------AQQAlRRtMEiy 140 (333)
T KOG0991|consen 90 --RGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAG-------------AQQALRRTMEIY 140 (333)
T ss_pred --cccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhH-------------HHHHHHHHHHHH
Confidence 344444333344544322223346679999999999865 899999999853
No 154
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=1.4e-12 Score=115.77 Aligned_cols=151 Identities=20% Similarity=0.259 Sum_probs=89.5
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEE----------eccC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIV----------VDAT 74 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~----------~~~~ 74 (225)
+.|+||+.+++.|..++..-. . ...+||+||+|||||++|+.+|+.+++.-.. -.|+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r------------i-~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg 82 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR------------V-GHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCG 82 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC------------C-CeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCc
Confidence 456899999999988662110 1 1248899999999999999999999763110 0111
Q ss_pred cc---------ccc---CccCCc-H-HHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHH
Q psy5910 75 SF---------TEA---GYVGDD-V-ESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLK 140 (225)
Q Consensus 75 ~~---------~~~---~~~g~~-~-~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~ 140 (225)
.. ... .+.|.. . ...++.+.+......-....-|++|||++.+... .++.|++
T Consensus 83 ~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~-------------a~naLLK 149 (620)
T PRK14954 83 ECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTA-------------AFNAFLK 149 (620)
T ss_pred cCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHH-------------HHHHHHH
Confidence 00 000 012211 0 1223333322211112235679999999999865 6899999
Q ss_pred HHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 141 LIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 141 ~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
.|++-. .. .++++.|++ ...+.+.+++|. ..+.|..++.++
T Consensus 150 ~LEePp-------------~~-tv~IL~t~~--------~~kLl~TI~SRc-~~vef~~l~~~e 190 (620)
T PRK14954 150 TLEEPP-------------PH-AIFIFATTE--------LHKIPATIASRC-QRFNFKRIPLDE 190 (620)
T ss_pred HHhCCC-------------CC-eEEEEEeCC--------hhhhhHHHHhhc-eEEecCCCCHHH
Confidence 999621 11 034444433 357888888885 347777766543
No 155
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.40 E-value=1.3e-12 Score=108.38 Aligned_cols=145 Identities=23% Similarity=0.224 Sum_probs=94.9
Q ss_pred eeechhhHHhhheeeeEecccceEeecccceeeeCCc-EEEEcCCCCcHHHHHHHHHHHhC-------------------
Q psy5910 6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSN-ILLVGPTGCGKTLMVKTLAKIIN------------------- 65 (225)
Q Consensus 6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-vLl~Gp~GtGKT~la~~ia~~~~------------------- 65 (225)
.++|+++++..+...+.... ...+ +||+||||||||++|.++|+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~-------------~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~ 68 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG-------------RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLI 68 (325)
T ss_pred CcccchhHHHHHHHHHHhcC-------------CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHH
Confidence 45777777777766552111 1235 88999999999999999999986
Q ss_pred -----CCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHH
Q psy5910 66 -----VPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLK 140 (225)
Q Consensus 66 -----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~ 140 (225)
..++.+++++..... -....++.+.............-|++|||+|.+... ++++|+.
T Consensus 69 ~~~~~~d~lel~~s~~~~~~----i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~-------------A~nallk 131 (325)
T COG0470 69 PAGNHPDFLELNPSDLRKID----IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTED-------------AANALLK 131 (325)
T ss_pred hhcCCCceEEecccccCCCc----chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHH-------------HHHHHHH
Confidence 356777776653211 112233343333211111245679999999999987 7999999
Q ss_pred HHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhccccccccccccc
Q psy5910 141 LIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNN 203 (225)
Q Consensus 141 ~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~ 203 (225)
.++.. ..+ ..++.++|. +..+-+.+++|. ..+.|+.|...
T Consensus 132 ~lEep-------------~~~--~~~il~~n~-------~~~il~tI~SRc-~~i~f~~~~~~ 171 (325)
T COG0470 132 TLEEP-------------PKN--TRFILITND-------PSKILPTIRSRC-QRIRFKPPSRL 171 (325)
T ss_pred HhccC-------------CCC--eEEEEEcCC-------hhhccchhhhcc-eeeecCCchHH
Confidence 99862 222 555556665 668888999984 34666655543
No 156
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.40 E-value=9.5e-13 Score=115.62 Aligned_cols=131 Identities=19% Similarity=0.278 Sum_probs=84.6
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccCc
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAGY 81 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~~ 81 (225)
+.++|.+.+.+.+.+.+.. +.....+|||+|++||||+++|++++... +.||+.++|..+.+.
T Consensus 204 ~~~ig~s~~~~~~~~~~~~------------~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~-- 269 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARK------------LAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDD-- 269 (520)
T ss_pred cceeECCHHHHHHHHHHHH------------HhCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHH--
Confidence 3567877766666554411 11334689999999999999999998776 468999999886431
Q ss_pred cCCcHHHHHHHHHHh-----------cchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCcc
Q psy5910 82 VGDDVESIIQKLLHE-----------CDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSIT 150 (225)
Q Consensus 82 ~g~~~~~~~~~~~~~-----------~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ 150 (225)
..-..+|.. ..+.+..+.+++|||||++.+.+. +|..|+++|+.....
T Consensus 270 ------~~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~~-------------~Q~~Ll~~l~~~~~~-- 328 (520)
T PRK10820 270 ------VVESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSPR-------------MQAKLLRFLNDGTFR-- 328 (520)
T ss_pred ------HHHHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCHH-------------HHHHHHHHHhcCCcc--
Confidence 000111111 112234567899999999999988 899999999864321
Q ss_pred ccccccCCCCCCceeEEecCcc
Q psy5910 151 SLAEKKNPSQNPQVFNIDTTNI 172 (225)
Q Consensus 151 ~~~~~~~~~~~~~~~~i~ttn~ 172 (225)
..+.......+ +.+|++|+.
T Consensus 329 ~~g~~~~~~~~--vRiI~st~~ 348 (520)
T PRK10820 329 RVGEDHEVHVD--VRVICATQK 348 (520)
T ss_pred cCCCCcceeee--eEEEEecCC
Confidence 11111111122 677777766
No 157
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=7.1e-13 Score=111.98 Aligned_cols=149 Identities=22% Similarity=0.264 Sum_probs=88.4
Q ss_pred eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcc----cc-cC
Q psy5910 6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSF----TE-AG 80 (225)
Q Consensus 6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~----~~-~~ 80 (225)
.++||+.+++.+...+... ..+.++||+||||+|||++|+++++.+..+.....+... .+ ..
T Consensus 18 ~iig~~~~~~~l~~~i~~~-------------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~ 84 (367)
T PRK14970 18 DVVGQSHITNTLLNAIENN-------------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDA 84 (367)
T ss_pred hcCCcHHHHHHHHHHHHcC-------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEecc
Confidence 4589999999998877221 112478899999999999999999988653211111000 00 00
Q ss_pred ccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCC
Q psy5910 81 YVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQ 160 (225)
Q Consensus 81 ~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~ 160 (225)
..... ...+..++..+..........|+++||++.+... .++.|+..|++.. .
T Consensus 85 ~~~~~-~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~-------------~~~~ll~~le~~~-------------~ 137 (367)
T PRK14970 85 ASNNS-VDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSA-------------AFNAFLKTLEEPP-------------A 137 (367)
T ss_pred ccCCC-HHHHHHHHHHHhhccccCCcEEEEEeChhhcCHH-------------HHHHHHHHHhCCC-------------C
Confidence 01111 1223333333211111235579999999988755 6788888887521 1
Q ss_pred CCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 161 NPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 161 ~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
. .++|.+++. ...+.+++.+|+. .+.|+.++.+.
T Consensus 138 ~--~~~Il~~~~-------~~kl~~~l~sr~~-~v~~~~~~~~~ 171 (367)
T PRK14970 138 H--AIFILATTE-------KHKIIPTILSRCQ-IFDFKRITIKD 171 (367)
T ss_pred c--eEEEEEeCC-------cccCCHHHHhcce-eEecCCccHHH
Confidence 1 333333332 3578888998863 47787776554
No 158
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.38 E-value=9.2e-13 Score=118.71 Aligned_cols=130 Identities=18% Similarity=0.283 Sum_probs=83.4
Q ss_pred eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccCcc
Q psy5910 6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAGYV 82 (225)
Q Consensus 6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~~~ 82 (225)
.++|.+.+.+.+.+.+. .......+|||+|++||||+++|++|++.. +.||+.++|..+...
T Consensus 326 ~l~g~s~~~~~~~~~~~------------~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~--- 390 (638)
T PRK11388 326 HMPQDSPQMRRLIHFGR------------QAAKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE--- 390 (638)
T ss_pred ceEECCHHHHHHHHHHH------------HHhCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH---
Confidence 35666665555554441 111334589999999999999999999876 468999999877421
Q ss_pred CCcHHHHHHHHHHhc--------chhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCcccccc
Q psy5910 83 GDDVESIIQKLLHEC--------DYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAE 154 (225)
Q Consensus 83 g~~~~~~~~~~~~~~--------~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~ 154 (225)
.....+|... .+.+..+.+++|||||++.+... +|..|+++|+..... ..++
T Consensus 391 -----~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~~-------------~Q~~Ll~~l~~~~~~--~~~~ 450 (638)
T PRK11388 391 -----ALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSPE-------------LQSALLQVLKTGVIT--RLDS 450 (638)
T ss_pred -----HHHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCCHH-------------HHHHHHHHHhcCcEE--eCCC
Confidence 0111122110 12234567899999999999988 899999999864322 1111
Q ss_pred ccCCCCCCceeEEecCcc
Q psy5910 155 KKNPSQNPQVFNIDTTNI 172 (225)
Q Consensus 155 ~~~~~~~~~~~~i~ttn~ 172 (225)
......+ +.+|+||+.
T Consensus 451 ~~~~~~~--~riI~~t~~ 466 (638)
T PRK11388 451 RRLIPVD--VRVIATTTA 466 (638)
T ss_pred CceEEee--EEEEEeccC
Confidence 1100112 778888877
No 159
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=99.38 E-value=8.4e-13 Score=116.44 Aligned_cols=142 Identities=6% Similarity=0.024 Sum_probs=102.0
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhCC--CeEEeccCcccccCccC-CcHHHHHHHHHH-hcchhhhhhCCCEEEEcchhh
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKIINV--PIIVVDATSFTEAGYVG-DDVESIIQKLLH-ECDYDVELAEQSIIYIDEIDK 116 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~~~--~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~-~~~~~~~~~~~~vl~iDEid~ 116 (225)
++|+|.|++||+||+++++++..+.. ||+.+..+...+. ..| -+++..+..-.. ...+.+..+.++|||+||++.
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~-L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~ 104 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDR-LLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAER 104 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHH-ccCCchHHhHhhcCCcCCCCCceeeccCCEEEecCccc
Confidence 68999999999999999999999865 7877766555432 333 344443332211 224566777899999999999
Q ss_pred hcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccc
Q psy5910 117 ISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETN 196 (225)
Q Consensus 117 l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~ 196 (225)
+.++ +++.|++.|+....++...+.......+ |++|+|.|.. .....+++++++||+.++.
T Consensus 105 ~~~~-------------~~~aLleame~G~vtIeR~G~s~~~Pa~--F~LIat~~~~----~~~~~L~~~lLDRf~l~v~ 165 (584)
T PRK13406 105 LEPG-------------TAARLAAALDTGEVRLERDGLALRLPAR--FGLVALDEGA----EEDERAPAALADRLAFHLD 165 (584)
T ss_pred CCHH-------------HHHHHHHHHhCCcEEEEECCcEEecCCC--cEEEecCCCh----hcccCCCHHhHhheEEEEE
Confidence 9988 8999999999877777555544333333 8888875541 0113599999999999966
Q ss_pred cccccc
Q psy5910 197 FLEKLN 202 (225)
Q Consensus 197 ~~~~~~ 202 (225)
...+..
T Consensus 166 v~~~~~ 171 (584)
T PRK13406 166 LDGLAL 171 (584)
T ss_pred cCCCCh
Confidence 665554
No 160
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.36 E-value=3e-12 Score=113.94 Aligned_cols=149 Identities=20% Similarity=0.298 Sum_probs=86.6
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEe---ccCc------
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVV---DATS------ 75 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~---~~~~------ 75 (225)
+.|+||+++++.|...+... .-...+||+||+|||||++|+.+++.+++....- .|+.
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~-------------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~ 82 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEG-------------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRA 82 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhC-------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHH
Confidence 35689999999998766211 0112468999999999999999999986422100 0000
Q ss_pred ccc---cCc---cC---CcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCC
Q psy5910 76 FTE---AGY---VG---DDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVN 146 (225)
Q Consensus 76 ~~~---~~~---~g---~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~ 146 (225)
+.. ..+ .+ .. ...++.+..............|++|||++.+... .++.|++.|++..
T Consensus 83 i~~~~~~d~~~i~~~~~~~-vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~-------------a~naLLk~LEepp 148 (585)
T PRK14950 83 IAEGSAVDVIEMDAASHTS-VDDAREIIERVQFRPALARYKVYIIDEVHMLSTA-------------AFNALLKTLEEPP 148 (585)
T ss_pred HhcCCCCeEEEEeccccCC-HHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHH-------------HHHHHHHHHhcCC
Confidence 000 000 00 11 1122333332211112245679999999999865 6899999998621
Q ss_pred cCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhccccccccccccc
Q psy5910 147 LSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNN 203 (225)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~ 203 (225)
.. .++++.+++ .+.+.+.+++|+. .+.|..++..
T Consensus 149 -------------~~-tv~Il~t~~--------~~kll~tI~SR~~-~i~f~~l~~~ 182 (585)
T PRK14950 149 -------------PH-AIFILATTE--------VHKVPATILSRCQ-RFDFHRHSVA 182 (585)
T ss_pred -------------CC-eEEEEEeCC--------hhhhhHHHHhccc-eeeCCCCCHH
Confidence 11 033333333 3567788888863 3667666554
No 161
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.34 E-value=5.5e-12 Score=105.28 Aligned_cols=150 Identities=17% Similarity=0.227 Sum_probs=90.3
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCC-------eEEe-cc---
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVP-------IIVV-DA--- 73 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~-------~~~~-~~--- 73 (225)
..++||+++++.+..++..- .-+..+||+||+|+|||++|+.+|+.+.+. .... .|
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~g-------------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c 89 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREG-------------KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPAS 89 (351)
T ss_pred hhccCcHHHHHHHHHHHHcC-------------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCC
Confidence 45799999999998877211 111247899999999999999999988551 1100 11
Q ss_pred Cc---cc---ccCc--c--------C-----CcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChH
Q psy5910 74 TS---FT---EAGY--V--------G-----DDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGE 132 (225)
Q Consensus 74 ~~---~~---~~~~--~--------g-----~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~ 132 (225)
.. +. .+.+ . | -.+ ..++.+.+............|++|||+|.+...
T Consensus 90 ~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~v-d~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~------------ 156 (351)
T PRK09112 90 PVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITV-DEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRN------------ 156 (351)
T ss_pred HHHHHHHcCCCCCEEEeecccccccccccccCCH-HHHHHHHHHhhhccccCCceEEEEEchhhcCHH------------
Confidence 00 00 0000 0 0 011 122222222211112235579999999999877
Q ss_pred HHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 133 GVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 133 ~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
.+++|++.||+.. .+. ++++.+ +. +..+.+.+++|+ ..+.|+.++.++
T Consensus 157 -aanaLLk~LEEpp-------------~~~-~fiLit-~~-------~~~llptIrSRc-~~i~l~pl~~~~ 204 (351)
T PRK09112 157 -AANAILKTLEEPP-------------ARA-LFILIS-HS-------SGRLLPTIRSRC-QPISLKPLDDDE 204 (351)
T ss_pred -HHHHHHHHHhcCC-------------CCc-eEEEEE-CC-------hhhccHHHHhhc-cEEEecCCCHHH
Confidence 7899999998621 120 333333 33 457789999997 468888877765
No 162
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.34 E-value=2.5e-12 Score=106.29 Aligned_cols=154 Identities=20% Similarity=0.237 Sum_probs=92.1
Q ss_pred CCCcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccc-c
Q psy5910 1 MELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTE-A 79 (225)
Q Consensus 1 ~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~-~ 79 (225)
|.+++. +||+++++.+...+..- .-+..+||+||+|+|||++|+.+++.+.+....-+..++.. .
T Consensus 1 m~~~~i-~g~~~~~~~l~~~~~~~-------------~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~ 66 (313)
T PRK05564 1 MSFHTI-IGHENIKNRIKNSIIKN-------------RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFK 66 (313)
T ss_pred CChhhc-cCcHHHHHHHHHHHHcC-------------CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEec
Confidence 555555 79999999998876110 11124579999999999999999998743211101111100 0
Q ss_pred CccCCcH-HHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCC
Q psy5910 80 GYVGDDV-ESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNP 158 (225)
Q Consensus 80 ~~~g~~~-~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~ 158 (225)
.+.|... ...++.+.............-|++||++|.+... .+++|++.||+-
T Consensus 67 ~~~~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~-------------a~naLLK~LEep------------- 120 (313)
T PRK05564 67 PINKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQ-------------AQNAFLKTIEEP------------- 120 (313)
T ss_pred cccCCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCHH-------------HHHHHHHHhcCC-------------
Confidence 0111111 1123333332211112345679999999999866 799999999962
Q ss_pred CCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 159 SQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 159 ~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
..+ .++|.+++. ++.+.+.+++|. ..+.|+.++.+.
T Consensus 121 p~~--t~~il~~~~-------~~~ll~TI~SRc-~~~~~~~~~~~~ 156 (313)
T PRK05564 121 PKG--VFIILLCEN-------LEQILDTIKSRC-QIYKLNRLSKEE 156 (313)
T ss_pred CCC--eEEEEEeCC-------hHhCcHHHHhhc-eeeeCCCcCHHH
Confidence 222 333333333 468888999996 357787776654
No 163
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.34 E-value=3.6e-12 Score=115.67 Aligned_cols=137 Identities=23% Similarity=0.356 Sum_probs=86.6
Q ss_pred eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCccccc---
Q psy5910 6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEA--- 79 (225)
Q Consensus 6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~--- 79 (225)
.++|++.+++.+.+.+.. +.....+|||+|++|||||++|++|+... +.+++.++|..+...
T Consensus 377 ~liG~S~~~~~~~~~~~~------------~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~ 444 (686)
T PRK15429 377 EIIGRSEAMYSVLKQVEM------------VAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLE 444 (686)
T ss_pred ceeecCHHHHHHHHHHHH------------HhCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhh
Confidence 578888888777665521 11334589999999999999999999876 578999999876321
Q ss_pred -CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCC
Q psy5910 80 -GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNP 158 (225)
Q Consensus 80 -~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~ 158 (225)
.+.|..-.. .........+.+....++++||||++.+... +|..|+.+|+..... ..++....
T Consensus 445 ~~lfg~~~~~-~~g~~~~~~g~le~a~~GtL~Ldei~~L~~~-------------~Q~~L~~~l~~~~~~--~~g~~~~~ 508 (686)
T PRK15429 445 SDLFGHERGA-FTGASAQRIGRFELADKSSLFLDEVGDMPLE-------------LQPKLLRVLQEQEFE--RLGSNKII 508 (686)
T ss_pred hhhcCccccc-ccccccchhhHHHhcCCCeEEEechhhCCHH-------------HHHHHHHHHHhCCEE--eCCCCCcc
Confidence 111110000 0000000012234457899999999999988 899999999864321 11111111
Q ss_pred CCCCceeEEecCcc
Q psy5910 159 SQNPQVFNIDTTNI 172 (225)
Q Consensus 159 ~~~~~~~~i~ttn~ 172 (225)
..+ +.+|++|+.
T Consensus 509 ~~~--~RiI~~t~~ 520 (686)
T PRK15429 509 QTD--VRLIAATNR 520 (686)
T ss_pred cce--EEEEEeCCC
Confidence 122 788888877
No 164
>KOG0736|consensus
Probab=99.33 E-value=5.3e-12 Score=111.15 Aligned_cols=136 Identities=17% Similarity=0.289 Sum_probs=102.5
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhccc
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKK 120 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~ 120 (225)
..+||+|+||||||++.+++|.+++.+++.++|.++... -.+ ..+..+...|.++ +...|+|||+-.+|-+..+
T Consensus 432 ~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~-s~~-~~etkl~~~f~~a----~~~~pavifl~~~dvl~id 505 (953)
T KOG0736|consen 432 PSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAE-SAS-HTETKLQAIFSRA----RRCSPAVLFLRNLDVLGID 505 (953)
T ss_pred eEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhc-ccc-hhHHHHHHHHHHH----hhcCceEEEEeccceeeec
Confidence 368899999999999999999999999999999888652 122 2355667777776 6779999999999999865
Q ss_pred ccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccc
Q psy5910 121 TDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEK 200 (225)
Q Consensus 121 ~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~ 200 (225)
.++ ....++++.+-.+|..-- .+...+++++|++++. .++|++.+++.|...|.++.+
T Consensus 506 ~dg-----ged~rl~~~i~~~ls~e~----------~~~~~~~~ivv~t~~s-------~~~lp~~i~~~f~~ei~~~~l 563 (953)
T KOG0736|consen 506 QDG-----GEDARLLKVIRHLLSNED----------FKFSCPPVIVVATTSS-------IEDLPADIQSLFLHEIEVPAL 563 (953)
T ss_pred CCC-----chhHHHHHHHHHHHhccc----------ccCCCCceEEEEeccc-------cccCCHHHHHhhhhhccCCCC
Confidence 433 334456666666555100 0122233788888877 789999999999889999999
Q ss_pred cccc
Q psy5910 201 LNNN 204 (225)
Q Consensus 201 ~~~~ 204 (225)
++++
T Consensus 564 se~q 567 (953)
T KOG0736|consen 564 SEEQ 567 (953)
T ss_pred CHHH
Confidence 9887
No 165
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=99.33 E-value=1.1e-12 Score=95.66 Aligned_cols=132 Identities=23% Similarity=0.352 Sum_probs=80.6
Q ss_pred echhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCC---CeEEeccCcccccCccCC
Q psy5910 8 IGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINV---PIIVVDATSFTEAGYVGD 84 (225)
Q Consensus 8 ~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~---~~~~~~~~~~~~~~~~g~ 84 (225)
+|.+.+++.+.+.+. .+.....+|+|+|++||||+++|+.|+...+. +++.++|....
T Consensus 1 vG~S~~~~~l~~~l~------------~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLE------------RLAKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP------- 61 (138)
T ss_dssp --SCHHHHHHHHHHH------------HHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-------
T ss_pred CCCCHHHHHHHHHHH------------HHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-------
Confidence 466666666666552 12234468999999999999999999998753 34444443321
Q ss_pred cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910 85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV 164 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~ 164 (225)
...+. ...++++||+|+|.+.+. .|..|+..|+... ..+ +
T Consensus 62 ------~~~l~-------~a~~gtL~l~~i~~L~~~-------------~Q~~L~~~l~~~~------------~~~--~ 101 (138)
T PF14532_consen 62 ------AELLE-------QAKGGTLYLKNIDRLSPE-------------AQRRLLDLLKRQE------------RSN--V 101 (138)
T ss_dssp ------HHHHH-------HCTTSEEEEECGCCS-HH-------------HHHHHHHHHHHCT------------TTT--S
T ss_pred ------HHHHH-------HcCCCEEEECChHHCCHH-------------HHHHHHHHHHhcC------------CCC--e
Confidence 22322 248899999999999988 7999999998521 122 5
Q ss_pred eEEecCcceeeccCccccHHHHHHhhcccc-cccc
Q psy5910 165 FNIDTTNILFIAGGAFSGIENFIINRINQE-TNFL 198 (225)
Q Consensus 165 ~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~-i~~~ 198 (225)
.+|+++............+++.+..||... |..|
T Consensus 102 RlI~ss~~~l~~l~~~~~~~~~L~~~l~~~~i~lP 136 (138)
T PF14532_consen 102 RLIASSSQDLEELVEEGRFSPDLYYRLSQLEIHLP 136 (138)
T ss_dssp EEEEEECC-CCCHHHHSTHHHHHHHHCSTCEEEE-
T ss_pred EEEEEeCCCHHHHhhccchhHHHHHHhCCCEEeCC
Confidence 666666553311111234677777777544 4443
No 166
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.32 E-value=4.4e-12 Score=105.41 Aligned_cols=151 Identities=22% Similarity=0.189 Sum_probs=88.5
Q ss_pred cceeec-hhhHHhhheeeeEecccceEeecccceeeeCCc-EEEEcCCCCcHHHHHHHHHHHhCCCeE--Eecc------
Q psy5910 4 DRHIIG-QHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSN-ILLVGPTGCGKTLMVKTLAKIINVPII--VVDA------ 73 (225)
Q Consensus 4 ~~~i~G-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-vLl~Gp~GtGKT~la~~ia~~~~~~~~--~~~~------ 73 (225)
-+.|+| |+.+++.+...+.. ....+ +||+||+|+||+++|+.+++.+.++-. ...|
T Consensus 4 ~~~i~~~q~~~~~~L~~~~~~--------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c 69 (329)
T PRK08058 4 WEQLTALQPVVVKMLQNSIAK--------------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNC 69 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHc--------------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHH
Confidence 344566 99999999887621 11124 579999999999999999998743210 0000
Q ss_pred --------CcccccCccCCcH-HHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhc
Q psy5910 74 --------TSFTEAGYVGDDV-ESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEG 144 (225)
Q Consensus 74 --------~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~ 144 (225)
.++.-....|..+ ...++.+..............|++|||+|.+... .+++|++.||+
T Consensus 70 ~~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~-------------a~NaLLK~LEE 136 (329)
T PRK08058 70 KRIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTAS-------------AANSLLKFLEE 136 (329)
T ss_pred HHHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHH-------------HHHHHHHHhcC
Confidence 0110000111110 1122233222211111235679999999999876 79999999996
Q ss_pred CCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 145 VNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
|..+ .++|.+++. .+.+.+.+++|. ..+.|..++.+.
T Consensus 137 -------------Pp~~--~~~Il~t~~-------~~~ll~TIrSRc-~~i~~~~~~~~~ 173 (329)
T PRK08058 137 -------------PSGG--TTAILLTEN-------KHQILPTILSRC-QVVEFRPLPPES 173 (329)
T ss_pred -------------CCCC--ceEEEEeCC-------hHhCcHHHHhhc-eeeeCCCCCHHH
Confidence 2222 333334433 468899999995 347777666553
No 167
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.32 E-value=7.8e-12 Score=112.40 Aligned_cols=159 Identities=17% Similarity=0.189 Sum_probs=100.2
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcE-EEEcCCCCcHHHHHHHHHHHh----------CCCeEEecc
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNI-LLVGPTGCGKTLMVKTLAKII----------NVPIIVVDA 73 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v-Ll~Gp~GtGKT~la~~ia~~~----------~~~~~~~~~ 73 (225)
+.|.|.++.++.|...+.....+ ..+.++ +++|+||||||++++.+.+.+ ...+++++|
T Consensus 755 D~LPhREeEIeeLasfL~paIkg----------sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINC 824 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQ----------SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEING 824 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhc----------CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeC
Confidence 56788888888888877443322 122355 599999999999999998766 245788998
Q ss_pred CcccccC---------------ccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHH
Q psy5910 74 TSFTEAG---------------YVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSL 138 (225)
Q Consensus 74 ~~~~~~~---------------~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~L 138 (225)
..+.... ..|......+..+|.... -......||+|||+|.+... .+..|
T Consensus 825 m~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~--k~~r~v~IIILDEID~L~kK-------------~QDVL 889 (1164)
T PTZ00112 825 MNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNK--KDNRNVSILIIDEIDYLITK-------------TQKVL 889 (1164)
T ss_pred CccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhh--cccccceEEEeehHhhhCcc-------------HHHHH
Confidence 5543210 011112233334433210 01123459999999999865 35667
Q ss_pred HHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccc-cccccccccc
Q psy5910 139 LKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQE-TNFLEKLNNN 204 (225)
Q Consensus 139 l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~-i~~~~~~~~~ 204 (225)
+.+++.... ... ++.+|+.+|.. ..++.+++.+++||... |.|++++.++
T Consensus 890 YnLFR~~~~----------s~S--KLiLIGISNdl----DLperLdPRLRSRLg~eeIvF~PYTaEQ 940 (1164)
T PTZ00112 890 FTLFDWPTK----------INS--KLVLIAISNTM----DLPERLIPRCRSRLAFGRLVFSPYKGDE 940 (1164)
T ss_pred HHHHHHhhc----------cCC--eEEEEEecCch----hcchhhhhhhhhccccccccCCCCCHHH
Confidence 777763110 111 27788888752 12456888999999765 9998888877
No 168
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.32 E-value=1.6e-11 Score=94.24 Aligned_cols=120 Identities=18% Similarity=0.253 Sum_probs=75.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCC------------------------eEEeccCcccccCccCCcHHHHHHHHHHhc
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVP------------------------IIVVDATSFTEAGYVGDDVESIIQKLLHEC 97 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~------------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 97 (225)
.+||+||+|+|||++|+.+++.+... +..+.... +.. . ...++.+....
T Consensus 16 ~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~----~~~--~-~~~i~~i~~~~ 88 (188)
T TIGR00678 16 AYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG----QSI--K-VDQVRELVEFL 88 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc----CcC--C-HHHHHHHHHHH
Confidence 57899999999999999999987442 11111100 001 1 12233333333
Q ss_pred chhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeecc
Q psy5910 98 DYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAG 177 (225)
Q Consensus 98 ~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~ 177 (225)
..........|++|||++.+... .++.|+..|+... .. ..+|.+++.
T Consensus 89 ~~~~~~~~~kviiide~~~l~~~-------------~~~~Ll~~le~~~-------------~~--~~~il~~~~----- 135 (188)
T TIGR00678 89 SRTPQESGRRVVIIEDAERMNEA-------------AANALLKTLEEPP-------------PN--TLFILITPS----- 135 (188)
T ss_pred ccCcccCCeEEEEEechhhhCHH-------------HHHHHHHHhcCCC-------------CC--eEEEEEECC-----
Confidence 22112345679999999999866 6889999998521 12 334444433
Q ss_pred CccccHHHHHHhhcccccccccccccc
Q psy5910 178 GAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 178 ~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
...+.+++++|+. .+.|+.++.++
T Consensus 136 --~~~l~~~i~sr~~-~~~~~~~~~~~ 159 (188)
T TIGR00678 136 --PEKLLPTIRSRCQ-VLPFPPLSEEA 159 (188)
T ss_pred --hHhChHHHHhhcE-EeeCCCCCHHH
Confidence 3588999999973 58888887664
No 169
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.31 E-value=5.3e-12 Score=106.50 Aligned_cols=161 Identities=19% Similarity=0.223 Sum_probs=94.0
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhC---------CCeEEeccCc
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIIN---------VPIIVVDATS 75 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~---------~~~~~~~~~~ 75 (225)
+.++|.++.++.|...+.....+ ...++++++||||||||++++.+++.+. ..+++++|..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~----------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~ 84 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRG----------SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI 84 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcC----------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence 46789999999998877332211 2235789999999999999999998662 4577788765
Q ss_pred ccccC---------c---------cCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHH
Q psy5910 76 FTEAG---------Y---------VGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQS 137 (225)
Q Consensus 76 ~~~~~---------~---------~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~ 137 (225)
..... + .+.+....+..++... .....+.||+|||+|.+.... +.+...
T Consensus 85 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l---~~~~~~~vlvIDE~d~L~~~~----------~~~L~~ 151 (365)
T TIGR02928 85 LDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKEL---NERGDSLIIVLDEIDYLVGDD----------DDLLYQ 151 (365)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHH---HhcCCeEEEEECchhhhccCC----------cHHHHh
Confidence 43200 0 0111111222222211 012346799999999997321 012233
Q ss_pred HHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhccc-ccccccccccc
Q psy5910 138 LLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQ-ETNFLEKLNNN 204 (225)
Q Consensus 138 Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~-~i~~~~~~~~~ 204 (225)
|+++.+... .+..+ +.+|.++|.+.. .+.+++.+.+||.. .+.|++++.++
T Consensus 152 l~~~~~~~~----------~~~~~--v~lI~i~n~~~~----~~~l~~~~~s~~~~~~i~f~p~~~~e 203 (365)
T TIGR02928 152 LSRARSNGD----------LDNAK--VGVIGISNDLKF----RENLDPRVKSSLCEEEIIFPPYDAEE 203 (365)
T ss_pred HhccccccC----------CCCCe--EEEEEEECCcch----HhhcCHHHhccCCcceeeeCCCCHHH
Confidence 333311100 01112 677777776321 24678888889864 48999888765
No 170
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.31 E-value=7.7e-12 Score=98.57 Aligned_cols=144 Identities=13% Similarity=0.121 Sum_probs=84.7
Q ss_pred Ccceee-chhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccc
Q psy5910 3 LDRHII-GQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTE 78 (225)
Q Consensus 3 l~~~i~-G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~ 78 (225)
+++.+. +...+++.+.+.+. .....+++|+||+|||||++|+++++.+ +.+++++++..+..
T Consensus 14 ~~~~~~~~~~~~~~~l~~~~~--------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~ 79 (226)
T TIGR03420 14 FDNFYAGGNAELLAALRQLAA--------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQ 79 (226)
T ss_pred hcCcCcCCcHHHHHHHHHHHh--------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHH
Confidence 455553 35556677766441 1234689999999999999999999877 46778888766532
Q ss_pred cCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCC
Q psy5910 79 AGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNP 158 (225)
Q Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~ 158 (225)
. ....+... ....+|+|||++.+.... ..++.|..+++....
T Consensus 80 ~----------~~~~~~~~------~~~~lLvIDdi~~l~~~~-----------~~~~~L~~~l~~~~~----------- 121 (226)
T TIGR03420 80 A----------DPEVLEGL------EQADLVCLDDVEAIAGQP-----------EWQEALFHLYNRVRE----------- 121 (226)
T ss_pred h----------HHHHHhhc------ccCCEEEEeChhhhcCCh-----------HHHHHHHHHHHHHHH-----------
Confidence 0 01222111 234699999999987541 025667777653210
Q ss_pred CCCCceeEEecCcceeeccCccccHHHHHHhhcc--cccccccccccc
Q psy5910 159 SQNPQVFNIDTTNILFIAGGAFSGIENFIINRIN--QETNFLEKLNNN 204 (225)
Q Consensus 159 ~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~--~~i~~~~~~~~~ 204 (225)
.. ..+|.|++... .......+.+.+||. ..+.++.++.++
T Consensus 122 -~~--~~iIits~~~~---~~~~~~~~~L~~r~~~~~~i~l~~l~~~e 163 (226)
T TIGR03420 122 -AG--GRLLIAGRAAP---AQLPLRLPDLRTRLAWGLVFQLPPLSDEE 163 (226)
T ss_pred -cC--CeEEEECCCCh---HHCCcccHHHHHHHhcCeeEecCCCCHHH
Confidence 01 22333443310 000112277888875 457888887654
No 171
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.31 E-value=1.4e-11 Score=92.26 Aligned_cols=130 Identities=24% Similarity=0.302 Sum_probs=80.1
Q ss_pred chhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCC---------------------
Q psy5910 9 GQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVP--------------------- 67 (225)
Q Consensus 9 G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~--------------------- 67 (225)
||+++++.|...+... .-+..+||+||+|+||+++|+.+++.+-..
T Consensus 1 gq~~~~~~L~~~~~~~-------------~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~ 67 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-------------RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNH 67 (162)
T ss_dssp S-HHHHHHHHHHHHCT-------------C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-C
T ss_pred CcHHHHHHHHHHHHcC-------------CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccC
Confidence 7888888888766211 111247899999999999999999988332
Q ss_pred --eEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcC
Q psy5910 68 --IIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGV 145 (225)
Q Consensus 68 --~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~ 145 (225)
++.++..... ..-. ...++.+.............-|++|||+|+|... ++++|++.||+.
T Consensus 68 ~d~~~~~~~~~~----~~i~-i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~-------------a~NaLLK~LEep 129 (162)
T PF13177_consen 68 PDFIIIKPDKKK----KSIK-IDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEE-------------AQNALLKTLEEP 129 (162)
T ss_dssp TTEEEEETTTSS----SSBS-HHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HH-------------HHHHHHHHHHST
T ss_pred cceEEEeccccc----chhh-HHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHH-------------HHHHHHHHhcCC
Confidence 2222211110 0012 2334455554432222345679999999999987 899999999973
Q ss_pred CcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhc
Q psy5910 146 NLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRI 191 (225)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf 191 (225)
..+ .++|.+++. .+.+.+.+++|.
T Consensus 130 -------------p~~--~~fiL~t~~-------~~~il~TI~SRc 153 (162)
T PF13177_consen 130 -------------PEN--TYFILITNN-------PSKILPTIRSRC 153 (162)
T ss_dssp -------------TTT--EEEEEEES--------GGGS-HHHHTTS
T ss_pred -------------CCC--EEEEEEECC-------hHHChHHHHhhc
Confidence 223 444444444 568999999995
No 172
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.30 E-value=1.3e-11 Score=102.23 Aligned_cols=122 Identities=20% Similarity=0.255 Sum_probs=79.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCC------------------------eEEeccCcccccCccCCcHHHHHHHHHHhc
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVP------------------------IIVVDATSFTEAGYVGDDVESIIQKLLHEC 97 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~------------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 97 (225)
.+||+||+|+||+++|+.+|+.+.+. ++.+.+..-. . ... ...++.+.+..
T Consensus 24 a~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~--~--~i~-id~iR~l~~~~ 98 (328)
T PRK05707 24 AYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEAD--K--TIK-VDQVRELVSFV 98 (328)
T ss_pred eeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCC--C--CCC-HHHHHHHHHHH
Confidence 57899999999999999999998542 1112111000 0 011 12234443333
Q ss_pred chhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeecc
Q psy5910 98 DYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAG 177 (225)
Q Consensus 98 ~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~ 177 (225)
.........-|++|||+|+|... ..++|++.||+ |..+ .++|.+|+.
T Consensus 99 ~~~~~~~~~kv~iI~~a~~m~~~-------------aaNaLLK~LEE-------------Pp~~--~~fiL~t~~----- 145 (328)
T PRK05707 99 VQTAQLGGRKVVLIEPAEAMNRN-------------AANALLKSLEE-------------PSGD--TVLLLISHQ----- 145 (328)
T ss_pred hhccccCCCeEEEECChhhCCHH-------------HHHHHHHHHhC-------------CCCC--eEEEEEECC-----
Confidence 21112345679999999999977 89999999997 2222 555555555
Q ss_pred CccccHHHHHHhhcccccccccccccc
Q psy5910 178 GAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 178 ~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
++.+.+.+++|+.. +.|+.|+.+.
T Consensus 146 --~~~ll~TI~SRc~~-~~~~~~~~~~ 169 (328)
T PRK05707 146 --PSRLLPTIKSRCQQ-QACPLPSNEE 169 (328)
T ss_pred --hhhCcHHHHhhcee-eeCCCcCHHH
Confidence 56899999999644 7888777664
No 173
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.30 E-value=1.1e-11 Score=105.62 Aligned_cols=160 Identities=18% Similarity=0.195 Sum_probs=94.9
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh-----CCCeEEeccCccccc
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII-----NVPIIVVDATSFTEA 79 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~-----~~~~~~~~~~~~~~~ 79 (225)
+.++|.++.++.+...+.....+ ...++++++||||||||++++.+++.+ +..+++++|......
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~----------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~ 99 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRG----------SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTR 99 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCC----------CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCH
Confidence 56788898888887776332211 223578999999999999999999877 466888888644210
Q ss_pred ----------------CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHh
Q psy5910 80 ----------------GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIE 143 (225)
Q Consensus 80 ----------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~ 143 (225)
...+......+..+.+.. -....+.||+|||+|.+..... ......|++.++
T Consensus 100 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~viviDE~d~l~~~~~---------~~~l~~l~~~~~ 167 (394)
T PRK00411 100 YAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYL---DERDRVLIVALDDINYLFEKEG---------NDVLYSLLRAHE 167 (394)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHH---HhcCCEEEEEECCHhHhhccCC---------chHHHHHHHhhh
Confidence 001112222222222111 0123457999999999982210 114455555554
Q ss_pred cCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccc-cccccccccc
Q psy5910 144 GVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQE-TNFLEKLNNN 204 (225)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~-i~~~~~~~~~ 204 (225)
... ..+ +.+|.++|..- ..+.+++.+.+||... |.|++++.++
T Consensus 168 ~~~------------~~~--v~vI~i~~~~~----~~~~l~~~~~s~~~~~~i~f~py~~~e 211 (394)
T PRK00411 168 EYP------------GAR--IGVIGISSDLT----FLYILDPRVKSVFRPEEIYFPPYTADE 211 (394)
T ss_pred ccC------------CCe--EEEEEEECCcc----hhhhcCHHHHhcCCcceeecCCCCHHH
Confidence 321 112 66666665521 1234677788888544 8998888776
No 174
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.30 E-value=2.4e-11 Score=87.68 Aligned_cols=76 Identities=26% Similarity=0.427 Sum_probs=50.9
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhCCC---eEEeccCcccccC------------ccCCcHHHHHHHHHHhcchhhhhhC
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKIINVP---IIVVDATSFTEAG------------YVGDDVESIIQKLLHECDYDVELAE 105 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~---~~~~~~~~~~~~~------------~~g~~~~~~~~~~~~~~~~~~~~~~ 105 (225)
.+++|+||||||||++++.++..+... ++.+++....... .............+..+ ....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALA----RKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHH----HhcC
Confidence 478899999999999999999999765 7888776543210 01111122233333332 2233
Q ss_pred CCEEEEcchhhhccc
Q psy5910 106 QSIIYIDEIDKISKK 120 (225)
Q Consensus 106 ~~vl~iDEid~l~~~ 120 (225)
+.++++||++.+...
T Consensus 79 ~~viiiDei~~~~~~ 93 (148)
T smart00382 79 PDVLILDEITSLLDA 93 (148)
T ss_pred CCEEEEECCcccCCH
Confidence 599999999999866
No 175
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.30 E-value=7.2e-12 Score=103.69 Aligned_cols=142 Identities=27% Similarity=0.309 Sum_probs=84.9
Q ss_pred eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCC-----CeEEeccCcccccC
Q psy5910 6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINV-----PIIVVDATSFTEAG 80 (225)
Q Consensus 6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~-----~~~~~~~~~~~~~~ 80 (225)
.++|++++++.+...+.. ...++++|+||||||||++++++++.+.. .++.+++.+..
T Consensus 18 ~~~g~~~~~~~l~~~i~~--------------~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~--- 80 (319)
T PRK00440 18 EIVGQEEIVERLKSYVKE--------------KNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDER--- 80 (319)
T ss_pred HhcCcHHHHHHHHHHHhC--------------CCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccccc---
Confidence 368999999999887621 11236899999999999999999998733 23333332211
Q ss_pred ccCCc-HHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCC
Q psy5910 81 YVGDD-VESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPS 159 (225)
Q Consensus 81 ~~g~~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~ 159 (225)
+.+ ....+....... ........+++|||++.+... .++.|+..++...
T Consensus 81 --~~~~~~~~i~~~~~~~--~~~~~~~~vviiDe~~~l~~~-------------~~~~L~~~le~~~------------- 130 (319)
T PRK00440 81 --GIDVIRNKIKEFARTA--PVGGAPFKIIFLDEADNLTSD-------------AQQALRRTMEMYS------------- 130 (319)
T ss_pred --chHHHHHHHHHHHhcC--CCCCCCceEEEEeCcccCCHH-------------HHHHHHHHHhcCC-------------
Confidence 111 111111111111 011124569999999998755 5778888887522
Q ss_pred CCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 160 QNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 160 ~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
.. ..+|.++|. ...+.+++.+|+. .+.|+.++.++
T Consensus 131 ~~--~~lIl~~~~-------~~~l~~~l~sr~~-~~~~~~l~~~e 165 (319)
T PRK00440 131 QN--TRFILSCNY-------SSKIIDPIQSRCA-VFRFSPLKKEA 165 (319)
T ss_pred CC--CeEEEEeCC-------ccccchhHHHHhh-eeeeCCCCHHH
Confidence 11 233333333 3466777888864 37777776654
No 176
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.29 E-value=1.7e-11 Score=102.89 Aligned_cols=149 Identities=13% Similarity=0.196 Sum_probs=91.4
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCC-cEEEEcCCCCcHHHHHHHHHHHhCCCeE-------------E
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKS-NILLVGPTGCGKTLMVKTLAKIINVPII-------------V 70 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~-~vLl~Gp~GtGKT~la~~ia~~~~~~~~-------------~ 70 (225)
+.|+||+++++.|..++..- ... .+||+||+|+||+++|.++|+.+-+.-. .
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~--------------rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~ 84 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSG--------------RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLA 84 (365)
T ss_pred hhccChHHHHHHHHHHHHcC--------------CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccccc
Confidence 46799999999998877211 112 4789999999999999999998833110 0
Q ss_pred e--cc-----------Cccc--ccCccC--------CcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCC
Q psy5910 71 V--DA-----------TSFT--EAGYVG--------DDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGK 127 (225)
Q Consensus 71 ~--~~-----------~~~~--~~~~~g--------~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~ 127 (225)
+ .| .++. ...+.. -.+ ..++.+.+..........+.|++|||+|.+...
T Consensus 85 ~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~V-dqiR~l~~~~~~~~~~~~~kVviIDead~m~~~------- 156 (365)
T PRK07471 85 IDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITV-DEVRELISFFGLTAAEGGWRVVIVDTADEMNAN------- 156 (365)
T ss_pred CCCCChHHHHHHccCCCCeEEEecccccccccccccccH-HHHHHHHHHhCcCcccCCCEEEEEechHhcCHH-------
Confidence 0 00 0000 000001 011 123343333322223346679999999999876
Q ss_pred CCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 128 DVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 128 ~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
.++.|++.|++. ..+ .++|.+|+. ++.+.+.+++|+ ..+.|+.++.+.
T Consensus 157 ------aanaLLK~LEep-------------p~~--~~~IL~t~~-------~~~llpti~SRc-~~i~l~~l~~~~ 204 (365)
T PRK07471 157 ------AANALLKVLEEP-------------PAR--SLFLLVSHA-------PARLLPTIRSRC-RKLRLRPLAPED 204 (365)
T ss_pred ------HHHHHHHHHhcC-------------CCC--eEEEEEECC-------chhchHHhhccc-eEEECCCCCHHH
Confidence 789999999862 122 334444444 457888888885 347777777665
No 177
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.29 E-value=1.2e-11 Score=110.22 Aligned_cols=149 Identities=21% Similarity=0.262 Sum_probs=88.9
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEec---cC-------
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVD---AT------- 74 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~---~~------- 74 (225)
+.|+||+++++.|..++..- .-...+||+||+|+|||++|+.+|+.+.+.-.... |+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~-------------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~ 83 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATN-------------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVA 83 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcC-------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHH
Confidence 35689999999998877211 01124789999999999999999998864211000 00
Q ss_pred -------cccccCccCC--cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcC
Q psy5910 75 -------SFTEAGYVGD--DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGV 145 (225)
Q Consensus 75 -------~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~ 145 (225)
++. .+.+. .....++.+...+....-....-|++|||++.+... .++.|++.|+..
T Consensus 84 ~~~~~~~n~~--~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~-------------a~naLLK~LEep 148 (614)
T PRK14971 84 FNEQRSYNIH--ELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQA-------------AFNAFLKTLEEP 148 (614)
T ss_pred HhcCCCCceE--EecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHH-------------HHHHHHHHHhCC
Confidence 000 01111 001223333332211111235679999999999865 789999999962
Q ss_pred CcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 146 NLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
. .. .++|.+++. ...+-+++++|+ ..+.|..++.+.
T Consensus 149 p-------------~~--tifIL~tt~-------~~kIl~tI~SRc-~iv~f~~ls~~e 184 (614)
T PRK14971 149 P-------------SY--AIFILATTE-------KHKILPTILSRC-QIFDFNRIQVAD 184 (614)
T ss_pred C-------------CC--eEEEEEeCC-------chhchHHHHhhh-heeecCCCCHHH
Confidence 1 22 333333332 347888999985 337777776553
No 178
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.27 E-value=3.6e-12 Score=109.90 Aligned_cols=139 Identities=26% Similarity=0.356 Sum_probs=91.9
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeE-E-e------ccCcc
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPII-V-V------DATSF 76 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~-~-~------~~~~~ 76 (225)
+.++||++++..|..++.... -....||.||-|||||++||.+|+.+++.-. . - .|..+
T Consensus 16 ~evvGQe~v~~~L~nal~~~r-------------i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I 82 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR-------------IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEI 82 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc-------------chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhh
Confidence 345999999999988872221 1236789999999999999999999976521 0 0 01111
Q ss_pred cccC------ccCC--cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcC
Q psy5910 77 TEAG------YVGD--DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLS 148 (225)
Q Consensus 77 ~~~~------~~g~--~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~ 148 (225)
.... +.+. ..-.-++.+.+...........-|.+|||++-+... ..++||+-||+
T Consensus 83 ~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~-------------afNALLKTLEE---- 145 (515)
T COG2812 83 NEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQ-------------AFNALLKTLEE---- 145 (515)
T ss_pred hcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHH-------------HHHHHhccccc----
Confidence 1100 1100 012235555555555555667889999999999977 89999999986
Q ss_pred ccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhc
Q psy5910 149 ITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRI 191 (225)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf 191 (225)
|..+. +++.+||+. ..++..+++|+
T Consensus 146 ---------PP~hV-~FIlATTe~--------~Kip~TIlSRc 170 (515)
T COG2812 146 ---------PPSHV-KFILATTEP--------QKIPNTILSRC 170 (515)
T ss_pred ---------CccCe-EEEEecCCc--------CcCchhhhhcc
Confidence 33331 445555544 68999999974
No 179
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.26 E-value=2.2e-11 Score=100.34 Aligned_cols=151 Identities=15% Similarity=0.178 Sum_probs=92.9
Q ss_pred cceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCe----------EEecc
Q psy5910 4 DRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPI----------IVVDA 73 (225)
Q Consensus 4 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~----------~~~~~ 73 (225)
.+.|+||+++++.+...+..- .-...+||+||+|+||+++|.++|+.+-+.- ...+.
T Consensus 3 f~~iiGq~~~~~~L~~~i~~~-------------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 3 FANLIGQPLAIELLTAAIKQN-------------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred HHHhCCHHHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 456899999999999877211 1123788999999999999999999873321 01111
Q ss_pred Cccc--ccC--ccCCcH-------------------HHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCC
Q psy5910 74 TSFT--EAG--YVGDDV-------------------ESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVS 130 (225)
Q Consensus 74 ~~~~--~~~--~~g~~~-------------------~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~ 130 (225)
.++. .+. ..|... ...++.+.+............|++||++|+|...
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~---------- 139 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEA---------- 139 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHH----------
Confidence 1111 000 001100 0123333333222222346789999999999876
Q ss_pred hHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 131 GEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 131 ~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
..++|++.||+- . +. ++++.|+ . ++.+.+.+++|. ..+.|+.++.+.
T Consensus 140 ---aaNaLLK~LEEP-------------p-~~-~fILi~~-~-------~~~Ll~TI~SRc-q~i~f~~l~~~~ 186 (314)
T PRK07399 140 ---AANALLKTLEEP-------------G-NG-TLILIAP-S-------PESLLPTIVSRC-QIIPFYRLSDEQ 186 (314)
T ss_pred ---HHHHHHHHHhCC-------------C-CC-eEEEEEC-C-------hHhCcHHHHhhc-eEEecCCCCHHH
Confidence 789999999962 2 21 3333333 3 578999999995 447787777654
No 180
>KOG0735|consensus
Probab=99.26 E-value=1.3e-11 Score=107.97 Aligned_cols=142 Identities=20% Similarity=0.313 Sum_probs=95.2
Q ss_pred eeCCcEEEEcCCCCcHHHHHHHHHHHhC----CCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcc
Q psy5910 38 LEKSNILLVGPTGCGKTLMVKTLAKIIN----VPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDE 113 (225)
Q Consensus 38 ~~~~~vLl~Gp~GtGKT~la~~ia~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDE 113 (225)
...+++||+||+|||||.|++++++++. +.+..++|+.+...+ -+.+.+.+..+|..+ -..+|+||++|+
T Consensus 429 ~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~--~e~iQk~l~~vfse~----~~~~PSiIvLDd 502 (952)
T KOG0735|consen 429 FRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSS--LEKIQKFLNNVFSEA----LWYAPSIIVLDD 502 (952)
T ss_pred cccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchh--HHHHHHHHHHHHHHH----HhhCCcEEEEcc
Confidence 4567999999999999999999999984 346678888775422 234455666666665 567999999999
Q ss_pred hhhhcccccccCC-CCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHh--h
Q psy5910 114 IDKISKKTDVVSG-KDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIIN--R 190 (225)
Q Consensus 114 id~l~~~~~~~~~-~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~--R 190 (225)
+|.+....+...+ .....++.-..|.+++..+. ..+..+.+|++.+. ...+++-+-+ +
T Consensus 503 ld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~------------~~~~~ia~Iat~qe-------~qtl~~~L~s~~~ 563 (952)
T KOG0735|consen 503 LDCLASASSNENGQDGVVSERLAAFLNQVIKIYL------------KRNRKIAVIATGQE-------LQTLNPLLVSPLL 563 (952)
T ss_pred hhhhhccCcccCCcchHHHHHHHHHHHHHHHHHH------------ccCcEEEEEEechh-------hhhcChhhcCccc
Confidence 9999873222211 12222223333334444322 11222677777776 5677887776 7
Q ss_pred cccccccccccccc
Q psy5910 191 INQETNFLEKLNNN 204 (225)
Q Consensus 191 f~~~i~~~~~~~~~ 204 (225)
|+..+..+.|...+
T Consensus 564 Fq~~~~L~ap~~~~ 577 (952)
T KOG0735|consen 564 FQIVIALPAPAVTR 577 (952)
T ss_pred eEEEEecCCcchhH
Confidence 88889999998866
No 181
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=4.1e-11 Score=107.32 Aligned_cols=171 Identities=22% Similarity=0.265 Sum_probs=112.7
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh----------CCCeEEeccC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII----------NVPIIVVDAT 74 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~----------~~~~~~~~~~ 74 (225)
+-++|.++.++++.+.+. ...+.+-+|+|+||+|||.++..+|... +..++.++.+
T Consensus 170 DPvIGRd~EI~r~iqIL~--------------RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g 235 (786)
T COG0542 170 DPVIGRDEEIRRTIQILS--------------RRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLG 235 (786)
T ss_pred CCCcChHHHHHHHHHHHh--------------ccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHH
Confidence 346899999998888662 1334577789999999999999998766 4557777776
Q ss_pred ccc-ccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccc
Q psy5910 75 SFT-EAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLA 153 (225)
Q Consensus 75 ~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~ 153 (225)
.+. ..+|.|+- +..+..+.+.. ....+.|+||||++.+-......++ .-++-+.|...|..+.
T Consensus 236 ~LvAGakyRGeF-EeRlk~vl~ev----~~~~~vILFIDEiHtiVGAG~~~G~----a~DAaNiLKPaLARGe------- 299 (786)
T COG0542 236 SLVAGAKYRGEF-EERLKAVLKEV----EKSKNVILFIDEIHTIVGAGATEGG----AMDAANLLKPALARGE------- 299 (786)
T ss_pred HHhccccccCcH-HHHHHHHHHHH----hcCCCeEEEEechhhhcCCCccccc----ccchhhhhHHHHhcCC-------
Confidence 663 34687764 66677776654 4455899999999999866432111 1236688888887543
Q ss_pred cccCCCCCCceeEEecCcce-eeccCccccHHHHHHhhcccccccccccccc-chhcccCChhHHHHc
Q psy5910 154 EKKNPSQNPQVFNIDTTNIL-FIAGGAFSGIENFIINRINQETNFLEKLNNN-YNLICETNTEDLINF 219 (225)
Q Consensus 154 ~~~~~~~~~~~~~i~ttn~~-~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~-~~l~~~~~~~~l~~~ 219 (225)
..+|++|..- + ..+=+-|+|+-|||.. |....|+.+. -.+++-+.+..-.++
T Consensus 300 ----------L~~IGATT~~EY---Rk~iEKD~AL~RRFQ~-V~V~EPs~e~ti~ILrGlk~~yE~hH 353 (786)
T COG0542 300 ----------LRCIGATTLDEY---RKYIEKDAALERRFQK-VLVDEPSVEDTIAILRGLKERYEAHH 353 (786)
T ss_pred ----------eEEEEeccHHHH---HHHhhhchHHHhcCce-eeCCCCCHHHHHHHHHHHHHHHHHcc
Confidence 6666666440 0 0012578999999954 5555565544 444444444443333
No 182
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.22 E-value=6.2e-11 Score=94.08 Aligned_cols=121 Identities=13% Similarity=0.100 Sum_probs=67.2
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhC---CCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhh
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKIIN---VPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKI 117 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l 117 (225)
++++|+||||||||+|++++++.+. ..+.+++...... ....+.+.. ..-.+++|||++.+
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~----------~~~~~~~~~------~~~dlliiDdi~~~ 109 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW----------FVPEVLEGM------EQLSLVCIDNIECI 109 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh----------hhHHHHHHh------hhCCEEEEeChhhh
Confidence 4788999999999999999998763 3344444433211 011111111 12358999999998
Q ss_pred cccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcc--ccc
Q psy5910 118 SKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRIN--QET 195 (225)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~--~~i 195 (225)
..+. ..+..|..++..... ... ..++.|++...-. ...+.+.+++|+. ..+
T Consensus 110 ~~~~-----------~~~~~lf~l~n~~~e-----------~g~--~~li~ts~~~p~~---l~~~~~~L~SRl~~g~~~ 162 (235)
T PRK08084 110 AGDE-----------LWEMAIFDLYNRILE-----------SGR--TRLLITGDRPPRQ---LNLGLPDLASRLDWGQIY 162 (235)
T ss_pred cCCH-----------HHHHHHHHHHHHHHH-----------cCC--CeEEEeCCCChHH---cCcccHHHHHHHhCCcee
Confidence 7541 133444444442110 000 2333344432100 1236789999986 447
Q ss_pred ccccccccc
Q psy5910 196 NFLEKLNNN 204 (225)
Q Consensus 196 ~~~~~~~~~ 204 (225)
.+.+|+.+.
T Consensus 163 ~l~~~~~~~ 171 (235)
T PRK08084 163 KLQPLSDEE 171 (235)
T ss_pred eecCCCHHH
Confidence 777776544
No 183
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.22 E-value=1.6e-11 Score=106.42 Aligned_cols=129 Identities=15% Similarity=0.295 Sum_probs=76.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHh-----CCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchh
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKII-----NVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEID 115 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid 115 (225)
.+++|+||||||||+|++++++.+ +..++++++..+.. .+...-.......+.. ......+|+|||++
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~-~~~~~~~~~~~~~~~~------~~~~~dlLiiDDi~ 221 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTN-DFVNALRNNTMEEFKE------KYRSVDVLLIDDIQ 221 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH-HHHHHHHcCcHHHHHH------HHhcCCEEEEehhh
Confidence 468899999999999999999987 45577777766532 1111000000011111 11256799999999
Q ss_pred hhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhccc--
Q psy5910 116 KISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQ-- 193 (225)
Q Consensus 116 ~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~-- 193 (225)
.+..+. ..+..|+..++..... .. .+++.+...+. ....+++.+.+||..
T Consensus 222 ~l~~~~-----------~~~~~l~~~~n~l~~~-----------~~--~iiits~~~p~----~l~~l~~~l~SRl~~gl 273 (450)
T PRK00149 222 FLAGKE-----------RTQEEFFHTFNALHEA-----------GK--QIVLTSDRPPK----ELPGLEERLRSRFEWGL 273 (450)
T ss_pred hhcCCH-----------HHHHHHHHHHHHHHHC-----------CC--cEEEECCCCHH----HHHHHHHHHHhHhcCCe
Confidence 987542 2456677766542110 01 23333332210 012378999999964
Q ss_pred ccccccccccc
Q psy5910 194 ETNFLEKLNNN 204 (225)
Q Consensus 194 ~i~~~~~~~~~ 204 (225)
.+.+..|+.+.
T Consensus 274 ~v~i~~pd~~~ 284 (450)
T PRK00149 274 TVDIEPPDLET 284 (450)
T ss_pred eEEecCCCHHH
Confidence 48888888765
No 184
>PRK06893 DNA replication initiation factor; Validated
Probab=99.21 E-value=7.9e-11 Score=93.11 Aligned_cols=118 Identities=9% Similarity=0.176 Sum_probs=68.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhh
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKI 117 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l 117 (225)
+.++|+||||||||+|++++++.+ +....+++..... ......+... .+..+++|||++.+
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~----------~~~~~~~~~~------~~~dlLilDDi~~~ 103 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ----------YFSPAVLENL------EQQDLVCLDDLQAV 103 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh----------hhhHHHHhhc------ccCCEEEEeChhhh
Confidence 357899999999999999999886 3344444442211 0011222211 24579999999998
Q ss_pred cccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCcccc---HHHHHHhhcc--
Q psy5910 118 SKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSG---IENFIINRIN-- 192 (225)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~---l~~al~~Rf~-- 192 (225)
.... ..+..|+.+++.... ... .+++.|+|. .+.. ..+.+.+|+.
T Consensus 104 ~~~~-----------~~~~~l~~l~n~~~~------------~~~-~illits~~------~p~~l~~~~~~L~sRl~~g 153 (229)
T PRK06893 104 IGNE-----------EWELAIFDLFNRIKE------------QGK-TLLLISADC------SPHALSIKLPDLASRLTWG 153 (229)
T ss_pred cCCh-----------HHHHHHHHHHHHHHH------------cCC-cEEEEeCCC------ChHHccccchhHHHHHhcC
Confidence 7542 134467776664210 010 233334433 1323 3478888875
Q ss_pred cccccccccccc
Q psy5910 193 QETNFLEKLNNN 204 (225)
Q Consensus 193 ~~i~~~~~~~~~ 204 (225)
..+.++.|+.+.
T Consensus 154 ~~~~l~~pd~e~ 165 (229)
T PRK06893 154 EIYQLNDLTDEQ 165 (229)
T ss_pred CeeeCCCCCHHH
Confidence 346677777665
No 185
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.20 E-value=7.6e-11 Score=104.96 Aligned_cols=48 Identities=21% Similarity=0.571 Sum_probs=40.1
Q ss_pred CcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCC
Q psy5910 3 LDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINV 66 (225)
Q Consensus 3 l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~ 66 (225)
+-+.|+||+++++.|..++ ...++++|+||||||||++|+++++.++.
T Consensus 29 ~~~~vigq~~a~~~L~~~~----------------~~~~~~l~~G~~G~GKttla~~l~~~l~~ 76 (637)
T PRK13765 29 LIDQVIGQEHAVEVIKKAA----------------KQRRHVMMIGSPGTGKSMLAKAMAELLPK 76 (637)
T ss_pred cHHHcCChHHHHHHHHHHH----------------HhCCeEEEECCCCCcHHHHHHHHHHHcCh
Confidence 3456899999999998877 33458999999999999999999988753
No 186
>PRK08727 hypothetical protein; Validated
Probab=99.18 E-value=1.2e-10 Score=92.27 Aligned_cols=145 Identities=13% Similarity=0.133 Sum_probs=84.1
Q ss_pred CCcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccc
Q psy5910 2 ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTE 78 (225)
Q Consensus 2 ~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~ 78 (225)
.+++.++|.+.+...+..... + .....++|+||+|||||+|++++++.+ +....+++.....
T Consensus 17 ~f~~f~~~~~n~~~~~~~~~~---~-----------~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~- 81 (233)
T PRK08727 17 RFDSYIAAPDGLLAQLQALAA---G-----------QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA- 81 (233)
T ss_pred ChhhccCCcHHHHHHHHHHHh---c-----------cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh-
Confidence 456677777766665543220 0 112358899999999999999998776 4445555543321
Q ss_pred cCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCC
Q psy5910 79 AGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNP 158 (225)
Q Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~ 158 (225)
..+...++. .....+|+|||++.+.... ..+..++.+++....
T Consensus 82 ---------~~~~~~~~~------l~~~dlLiIDDi~~l~~~~-----------~~~~~lf~l~n~~~~----------- 124 (233)
T PRK08727 82 ---------GRLRDALEA------LEGRSLVALDGLESIAGQR-----------EDEVALFDFHNRARA----------- 124 (233)
T ss_pred ---------hhHHHHHHH------HhcCCEEEEeCcccccCCh-----------HHHHHHHHHHHHHHH-----------
Confidence 111122221 1345699999999887542 134566666653210
Q ss_pred CCCCceeEEecCcceeeccCccccHHHHHHhhcccc--cccccccccc
Q psy5910 159 SQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQE--TNFLEKLNNN 204 (225)
Q Consensus 159 ~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~--i~~~~~~~~~ 204 (225)
.. ..+|.|+|... .....+.+.+++||... +.++.|+.+.
T Consensus 125 -~~--~~vI~ts~~~p---~~l~~~~~dL~SRl~~~~~~~l~~~~~e~ 166 (233)
T PRK08727 125 -AG--ITLLYTARQMP---DGLALVLPDLRSRLAQCIRIGLPVLDDVA 166 (233)
T ss_pred -cC--CeEEEECCCCh---hhhhhhhHHHHHHHhcCceEEecCCCHHH
Confidence 01 34555555411 01123579999998444 7888887765
No 187
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.18 E-value=7.8e-11 Score=95.90 Aligned_cols=65 Identities=26% Similarity=0.465 Sum_probs=47.0
Q ss_pred cceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhC--CCeEEeccCccc
Q psy5910 4 DRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIIN--VPIIVVDATSFT 77 (225)
Q Consensus 4 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~--~~~~~~~~~~~~ 77 (225)
.+-++||.+|.+..--.+.....+ ....+++|+.||||||||.||-.||+++| .||..++++.+-
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mik~g---------k~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiY 104 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMIKQG---------KMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIY 104 (450)
T ss_pred CCcccchHHHHHhhhHHHHHHHhC---------cccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceee
Confidence 355799998876643322111111 13456899999999999999999999995 789888887763
No 188
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.17 E-value=8.2e-11 Score=95.91 Aligned_cols=110 Identities=23% Similarity=0.364 Sum_probs=80.4
Q ss_pred eeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccCccCCcHHHHHHHHHHhcc------hhhhhhCCCE
Q psy5910 38 LEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAGYVGDDVESIIQKLLHECD------YDVELAEQSI 108 (225)
Q Consensus 38 ~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------~~~~~~~~~v 108 (225)
.-..++||.|++||||-.+|++.+... ..||+.+||+.+-+. ..-..+|..+. +..+.+.++.
T Consensus 225 mlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~--------~aEsElFG~apg~~gk~GffE~AngGT 296 (511)
T COG3283 225 MLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPED--------AAESELFGHAPGDEGKKGFFEQANGGT 296 (511)
T ss_pred ccCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchh--------HhHHHHhcCCCCCCCccchhhhccCCe
Confidence 334689999999999999999998777 678999999877431 11123333332 2344568899
Q ss_pred EEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcc
Q psy5910 109 IYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNI 172 (225)
Q Consensus 109 l~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~ 172 (225)
+|+|||..+.+. +|..|+++|....+ ...+....-+.+ +.+|++|..
T Consensus 297 VlLDeIgEmSp~-------------lQaKLLRFL~DGtF--RRVGee~Ev~vd--VRVIcatq~ 343 (511)
T COG3283 297 VLLDEIGEMSPR-------------LQAKLLRFLNDGTF--RRVGEDHEVHVD--VRVICATQV 343 (511)
T ss_pred EEeehhhhcCHH-------------HHHHHHHHhcCCce--eecCCcceEEEE--EEEEecccc
Confidence 999999999998 89999999976433 334443333444 899999988
No 189
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.17 E-value=8.9e-11 Score=96.61 Aligned_cols=66 Identities=23% Similarity=0.423 Sum_probs=44.5
Q ss_pred cceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhC--CCeEEeccCcccc
Q psy5910 4 DRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIIN--VPIIVVDATSFTE 78 (225)
Q Consensus 4 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~--~~~~~~~~~~~~~ 78 (225)
.+-++||.++.+.+--.+.....+. ...+.+||.||||||||.+|-++|+++| .||..++++++.+
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K---------~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS 90 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGK---------IAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYS 90 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT-----------TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-B
T ss_pred cccccChHHHHHHHHHHHHHHhccc---------ccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeee
Confidence 3567999998877654332222111 3456899999999999999999999995 7888888876643
No 190
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.15 E-value=7.6e-11 Score=102.77 Aligned_cols=109 Identities=21% Similarity=0.335 Sum_probs=73.2
Q ss_pred eCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccCccCCcHHHHHHHHHHhc-----------chhhhhh
Q psy5910 39 EKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAGYVGDDVESIIQKLLHEC-----------DYDVELA 104 (225)
Q Consensus 39 ~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----------~~~~~~~ 104 (225)
...++++.|++||||+++|++++... +.+|+.++|..+... ..-..+|... .+.+...
T Consensus 160 ~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~--------~~~~~lfg~~~g~~~~~~~~~~g~~~~a 231 (469)
T PRK10923 160 SSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKD--------LIESELFGHEKGAFTGANTIRQGRFEQA 231 (469)
T ss_pred cCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHH--------HHHHHhcCCCCCCCCCCCcCCCCCeeEC
Confidence 34579999999999999999999987 468999999876321 1111122111 1223455
Q ss_pred CCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcc
Q psy5910 105 EQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNI 172 (225)
Q Consensus 105 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~ 172 (225)
.++.+||||++.+... .|..|+++|+..... ..++......+ +.+|+||+.
T Consensus 232 ~~Gtl~l~~i~~l~~~-------------~q~~L~~~l~~~~~~--~~~~~~~~~~~--~rii~~~~~ 282 (469)
T PRK10923 232 DGGTLFLDEIGDMPLD-------------VQTRLLRVLADGQFY--RVGGYAPVKVD--VRIIAATHQ 282 (469)
T ss_pred CCCEEEEeccccCCHH-------------HHHHHHHHHhcCcEE--eCCCCCeEEee--EEEEEeCCC
Confidence 7889999999999988 899999999864322 11111111112 677777776
No 191
>KOG1969|consensus
Probab=99.14 E-value=1.1e-10 Score=102.41 Aligned_cols=139 Identities=17% Similarity=0.206 Sum_probs=84.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccc
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKT 121 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~ 121 (225)
-+||+||||-||||||+.||+..|..++.+|+++-.. +..+...+..+.+.....-+..+|.+|++||||-..+.
T Consensus 328 ilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt----~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~~- 402 (877)
T KOG1969|consen 328 ILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERT----APMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPRA- 402 (877)
T ss_pred eEEeecCCCCChhHHHHHHHHhcCceEEEeccccccc----HHHHHHHHHHHHhhccccccCCCcceEEEecccCCcHH-
Confidence 4559999999999999999999999999999988643 22333334444333322223358899999999987755
Q ss_pred cccCCCCCChHHHHHHHHHHHhcCCcCc--cccc--cccCCCCCCceeEEecCcceeeccCccccHHHHHHh--hccccc
Q psy5910 122 DVVSGKDVSGEGVQQSLLKLIEGVNLSI--TSLA--EKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIIN--RINQET 195 (225)
Q Consensus 122 ~~~~~~~~~~~~~~~~Ll~~l~~~~~~~--~~~~--~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i 195 (225)
+...++.++..-.... ...+ +++.... . .--.+++||-|| +-.-||++. -|...|
T Consensus 403 ------------~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr----~--~~L~RPIICICN-dLYaPaLR~Lr~~A~ii 463 (877)
T KOG1969|consen 403 ------------AVDVILSLVKATNKQATGKQAKKDKKRKKKR----S--KLLTRPIICICN-DLYAPALRPLRPFAEII 463 (877)
T ss_pred ------------HHHHHHHHHHhhcchhhcCcccchhhhhhhc----c--ccccCCEEEEec-CccchhhhhcccceEEE
Confidence 6788888886221111 1110 0000000 0 111233444443 134666665 466668
Q ss_pred ccccccccc
Q psy5910 196 NFLEKLNNN 204 (225)
Q Consensus 196 ~~~~~~~~~ 204 (225)
.|..|....
T Consensus 464 ~f~~p~~s~ 472 (877)
T KOG1969|consen 464 AFVPPSQSR 472 (877)
T ss_pred EecCCChhH
Confidence 898888764
No 192
>KOG2170|consensus
Probab=99.14 E-value=5.1e-11 Score=94.92 Aligned_cols=118 Identities=22% Similarity=0.354 Sum_probs=77.9
Q ss_pred CcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC-----CCeEEeccCcc
Q psy5910 3 LDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN-----VPIIVVDATSF 76 (225)
Q Consensus 3 l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~-----~~~~~~~~~~~ 76 (225)
|++.+.||+-+++.+..++..++.... ..++-+| |+|+|||||+.+++.||+.+- .+++..=-+..
T Consensus 80 L~~~lfGQHla~~~Vv~alk~~~~n~~--------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~ 151 (344)
T KOG2170|consen 80 LARALFGQHLAKQLVVNALKSHWANPN--------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATL 151 (344)
T ss_pred HHHHhhchHHHHHHHHHHHHHHhcCCC--------CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhc
Confidence 567899999999999998876665431 2234456 999999999999999998772 22222111111
Q ss_pred cccCccCC-cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhc
Q psy5910 77 TEAGYVGD-DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEG 144 (225)
Q Consensus 77 ~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~ 144 (225)
.|... .++..-.++..+..+.+..++.+++++||+|+|.+. +.+.|-.+||.
T Consensus 152 ---hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~g-------------Lld~lkpfLdy 204 (344)
T KOG2170|consen 152 ---HFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPG-------------LLDVLKPFLDY 204 (344)
T ss_pred ---cCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHh-------------HHHHHhhhhcc
Confidence 11111 111112222223334456779999999999999987 88899999985
No 193
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=1.9e-10 Score=96.54 Aligned_cols=158 Identities=18% Similarity=0.254 Sum_probs=101.5
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCC-----eEEeccCccccc
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVP-----IIVVDATSFTEA 79 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~-----~~~~~~~~~~~~ 79 (225)
+.+.+.+..++++...+...+.+ ..+.+++++||||||||.+++.+++++..+ ++++||......
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~----------~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~ 86 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRG----------ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTP 86 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcC----------CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCH
Confidence 44667788888887765444332 223369999999999999999999988433 899999665331
Q ss_pred --------------CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcC
Q psy5910 80 --------------GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGV 145 (225)
Q Consensus 80 --------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~ 145 (225)
-..|......+..+++... ......|+++||+|.+.... ...|+.++.-.
T Consensus 87 ~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~---~~~~~~IvvLDEid~L~~~~-------------~~~LY~L~r~~ 150 (366)
T COG1474 87 YQVLSKILNKLGKVPLTGDSSLEILKRLYDNLS---KKGKTVIVILDEVDALVDKD-------------GEVLYSLLRAP 150 (366)
T ss_pred HHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHH---hcCCeEEEEEcchhhhcccc-------------chHHHHHHhhc
Confidence 1122222233333332221 12356799999999999773 24455554421
Q ss_pred CcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccc-cccccccccc
Q psy5910 146 NLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQE-TNFLEKLNNN 204 (225)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~-i~~~~~~~~~ 204 (225)
.. .+.. +.+|+.+|-... .+.+++-+.++|... |.|++.+.++
T Consensus 151 ~~----------~~~~--v~vi~i~n~~~~----~~~ld~rv~s~l~~~~I~F~pY~a~e 194 (366)
T COG1474 151 GE----------NKVK--VSIIAVSNDDKF----LDYLDPRVKSSLGPSEIVFPPYTAEE 194 (366)
T ss_pred cc----------ccee--EEEEEEeccHHH----HHHhhhhhhhccCcceeeeCCCCHHH
Confidence 10 0112 677777777421 356899999998777 9999999887
No 194
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.14 E-value=1.6e-10 Score=91.29 Aligned_cols=115 Identities=14% Similarity=0.124 Sum_probs=73.2
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhh
Q psy5910 40 KSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDK 116 (225)
Q Consensus 40 ~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~ 116 (225)
.++++|+||+|||||++|+++++.+ +.++..+++..... . +.. .....+++|||++.
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~-------------~-~~~------~~~~~~liiDdi~~ 101 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLL-------------A-FDF------DPEAELYAVDDVER 101 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHH-------------H-Hhh------cccCCEEEEeChhh
Confidence 3578999999999999999999876 55677777655321 0 011 12467999999998
Q ss_pred hcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcc--cc
Q psy5910 117 ISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRIN--QE 194 (225)
Q Consensus 117 l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~--~~ 194 (225)
+... .+..|+.+++.... +...+++.+++..- ....+.+.+.+||. ..
T Consensus 102 l~~~-------------~~~~L~~~~~~~~~-------------~~~~~vl~~~~~~~----~~~~l~~~L~sr~~~~~~ 151 (227)
T PRK08903 102 LDDA-------------QQIALFNLFNRVRA-------------HGQGALLVAGPAAP----LALPLREDLRTRLGWGLV 151 (227)
T ss_pred cCch-------------HHHHHHHHHHHHHH-------------cCCcEEEEeCCCCH----HhCCCCHHHHHHHhcCeE
Confidence 8654 56777777764210 00123334443310 01135577888884 45
Q ss_pred cccccccccc
Q psy5910 195 TNFLEKLNNN 204 (225)
Q Consensus 195 i~~~~~~~~~ 204 (225)
+.+++++.+.
T Consensus 152 i~l~pl~~~~ 161 (227)
T PRK08903 152 YELKPLSDAD 161 (227)
T ss_pred EEecCCCHHH
Confidence 8888888653
No 195
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.13 E-value=5.8e-11 Score=101.58 Aligned_cols=129 Identities=15% Similarity=0.287 Sum_probs=76.1
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHh-----CCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchh
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKII-----NVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEID 115 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid 115 (225)
.+++|+||||||||+|++++++.+ +..++++++.++.. .+...-.......+.. ......+|+|||++
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~-~~~~~~~~~~~~~~~~------~~~~~dlLiiDDi~ 209 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTN-DFVNALRNNKMEEFKE------KYRSVDLLLIDDIQ 209 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHH-HHHHHHHcCCHHHHHH------HHHhCCEEEEehhh
Confidence 368899999999999999999887 46677887765432 1110000000011111 11245699999999
Q ss_pred hhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhccc--
Q psy5910 116 KISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQ-- 193 (225)
Q Consensus 116 ~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~-- 193 (225)
.+.... ..+..|+..++.... .. ..+++.+...+- ....+++.+.+||..
T Consensus 210 ~l~~~~-----------~~~~~l~~~~n~~~~------------~~-~~iiits~~~p~----~l~~l~~~l~SRl~~g~ 261 (405)
T TIGR00362 210 FLAGKE-----------RTQEEFFHTFNALHE------------NG-KQIVLTSDRPPK----ELPGLEERLRSRFEWGL 261 (405)
T ss_pred hhcCCH-----------HHHHHHHHHHHHHHH------------CC-CCEEEecCCCHH----HHhhhhhhhhhhccCCe
Confidence 987542 246667777764211 01 023333332211 123477889999975
Q ss_pred ccccccccccc
Q psy5910 194 ETNFLEKLNNN 204 (225)
Q Consensus 194 ~i~~~~~~~~~ 204 (225)
.+.++.|+.+.
T Consensus 262 ~v~i~~pd~~~ 272 (405)
T TIGR00362 262 VVDIEPPDLET 272 (405)
T ss_pred EEEeCCCCHHH
Confidence 48888888765
No 196
>PRK06526 transposase; Provisional
Probab=99.13 E-value=5.9e-11 Score=94.97 Aligned_cols=129 Identities=19% Similarity=0.279 Sum_probs=75.1
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhh
Q psy5910 40 KSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDK 116 (225)
Q Consensus 40 ~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~ 116 (225)
..+++|+||||||||+||.+|+..+ |..+...+...+... .............+. ......+|+|||++.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~-l~~~~~~~~~~~~l~------~l~~~dlLIIDD~g~ 170 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVAR-LAAAHHAGRLQAELV------KLGRYPLLIVDEVGY 170 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHH-HHHHHhcCcHHHHHH------HhccCCEEEEccccc
Confidence 4589999999999999999998876 555555444433210 000000000111111 113567999999998
Q ss_pred hcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCc-c--ccHHHHHHhhccc
Q psy5910 117 ISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGA-F--SGIENFIINRINQ 193 (225)
Q Consensus 117 l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~-~--~~l~~al~~Rf~~ 193 (225)
..... ..++.|.++++.... + ..+|.|||..+-.+.. + .-+-.++++|+-.
T Consensus 171 ~~~~~-----------~~~~~L~~li~~r~~-------------~--~s~IitSn~~~~~w~~~~~d~~~a~ai~dRl~~ 224 (254)
T PRK06526 171 IPFEP-----------EAANLFFQLVSSRYE-------------R--ASLIVTSNKPFGRWGEVFGDDVVAAAMIDRLVH 224 (254)
T ss_pred CCCCH-----------HHHHHHHHHHHHHHh-------------c--CCEEEEcCCCHHHHHHHcCChHHHHHHHHHHhc
Confidence 76442 245678888874221 1 3467888887644432 1 2366788898754
Q ss_pred c---ccccccc
Q psy5910 194 E---TNFLEKL 201 (225)
Q Consensus 194 ~---i~~~~~~ 201 (225)
. +.+.-++
T Consensus 225 ~~~~i~~~g~s 235 (254)
T PRK06526 225 HAEVISLKGDS 235 (254)
T ss_pred CceEEeecCCC
Confidence 4 5555444
No 197
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=99.12 E-value=2.1e-11 Score=108.12 Aligned_cols=181 Identities=17% Similarity=0.165 Sum_probs=112.0
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccce-eeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNI-YLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVG 83 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g 83 (225)
-.|+|.+.+|+.+.-.+ +++.......+. -...-||||.|.||||||.|.+.+++.+...++. ++......|...
T Consensus 286 PsIyG~e~VKkAilLqL---fgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vyt-sgkgss~~GLTA 361 (682)
T COG1241 286 PSIYGHEDVKKAILLQL---FGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYT-SGKGSSAAGLTA 361 (682)
T ss_pred ccccCcHHHHHHHHHHh---cCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEE-ccccccccCcee
Confidence 45789999888876544 333322211111 1222489999999999999999999988665443 332211112111
Q ss_pred CcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCc
Q psy5910 84 DDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQ 163 (225)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~ 163 (225)
.-.......-|.-..|.+-.+.++|..|||+|+|... -+.++..+|++...++...+-......+
T Consensus 362 av~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~~-------------dr~aihEaMEQQtIsIaKAGI~atLnAR-- 426 (682)
T COG1241 362 AVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNEE-------------DRVAIHEAMEQQTISIAKAGITATLNAR-- 426 (682)
T ss_pred EEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCChH-------------HHHHHHHHHHhcEeeecccceeeecchh--
Confidence 1000000001111224455678999999999999866 6899999999888777666533333333
Q ss_pred eeEEecCcceee-ccCc-----cccHHHHHHhhcccc-cccccccccc
Q psy5910 164 VFNIDTTNILFI-AGGA-----FSGIENFIINRINQE-TNFLEKLNNN 204 (225)
Q Consensus 164 ~~~i~ttn~~~i-~~~~-----~~~l~~al~~Rf~~~-i~~~~~~~~~ 204 (225)
.-++++.|..+- ++.+ .-++++++++|||.. +-...|+++.
T Consensus 427 csvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~ 474 (682)
T COG1241 427 CSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEK 474 (682)
T ss_pred hhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccc
Confidence 677788887662 2211 135899999999998 5555666543
No 198
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.11 E-value=2e-10 Score=88.91 Aligned_cols=152 Identities=20% Similarity=0.288 Sum_probs=104.0
Q ss_pred eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccCcc
Q psy5910 6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAGYV 82 (225)
Q Consensus 6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~~~ 82 (225)
.|+|-+.+++.|.+....+..+ .+..+|||+|.-|||||+|.+++.+++ +..++.++..++..
T Consensus 61 ~l~Gvd~qk~~L~~NT~~F~~G----------~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~---- 126 (287)
T COG2607 61 DLVGVDRQKEALVRNTEQFAEG----------LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLAT---- 126 (287)
T ss_pred HHhCchHHHHHHHHHHHHHHcC----------CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHhh----
Confidence 4689999999998877555554 455699999999999999999999888 56688887777643
Q ss_pred CCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCC
Q psy5910 83 GDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNP 162 (225)
Q Consensus 83 g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~ 162 (225)
....+..+ + ...+.-|||+|+.--= .++.....|-.+||+.-.. ..+|
T Consensus 127 ---Lp~l~~~L-r------~~~~kFIlFcDDLSFe------------~gd~~yK~LKs~LeG~ve~---------rP~N- 174 (287)
T COG2607 127 ---LPDLVELL-R------ARPEKFILFCDDLSFE------------EGDDAYKALKSALEGGVEG---------RPAN- 174 (287)
T ss_pred ---HHHHHHHH-h------cCCceEEEEecCCCCC------------CCchHHHHHHHHhcCCccc---------CCCe-
Confidence 12223222 1 1246789999984321 1223678888899975433 2344
Q ss_pred ceeEEecCcceeeccC----c---cccHHH--------HHHhhcccccccccccccc
Q psy5910 163 QVFNIDTTNILFIAGG----A---FSGIEN--------FIINRINQETNFLEKLNNN 204 (225)
Q Consensus 163 ~~~~i~ttn~~~i~~~----~---~~~l~~--------al~~Rf~~~i~~~~~~~~~ 204 (225)
|++.+|||+--+.-. + ...+++ ++-+||..-+.|.+++.+.
T Consensus 175 -Vl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~ 230 (287)
T COG2607 175 -VLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDE 230 (287)
T ss_pred -EEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHH
Confidence 999999998753331 1 112221 3445999999999999876
No 199
>PRK08181 transposase; Validated
Probab=99.11 E-value=8.3e-11 Score=94.66 Aligned_cols=129 Identities=16% Similarity=0.230 Sum_probs=76.5
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhh
Q psy5910 40 KSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDK 116 (225)
Q Consensus 40 ~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~ 116 (225)
..+++|+||||||||.||.++++.+ +..+++++..++... +............++. .....+|+|||+..
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~-l~~a~~~~~~~~~l~~------l~~~dLLIIDDlg~ 178 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQK-LQVARRELQLESAIAK------LDKFDLLILDDLAY 178 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHH-HHHHHhCCcHHHHHHH------HhcCCEEEEecccc
Confidence 4579999999999999999999765 666777766554321 0000000001111111 13567999999988
Q ss_pred hcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCcc---ccHHHHHHhhccc
Q psy5910 117 ISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAF---SGIENFIINRINQ 193 (225)
Q Consensus 117 l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~---~~l~~al~~Rf~~ 193 (225)
..... ..+..|+++++.... + --+|.|||..+--+... ..+..++++|+-.
T Consensus 179 ~~~~~-----------~~~~~Lf~lin~R~~-------------~--~s~IiTSN~~~~~w~~~~~D~~~a~aildRL~h 232 (269)
T PRK08181 179 VTKDQ-----------AETSVLFELISARYE-------------R--RSILITANQPFGEWNRVFPDPAMTLAAVDRLVH 232 (269)
T ss_pred ccCCH-----------HHHHHHHHHHHHHHh-------------C--CCEEEEcCCCHHHHHHhcCCccchhhHHHhhhc
Confidence 76541 245678888875321 1 34677888865333211 1356788888744
Q ss_pred c---ccccccc
Q psy5910 194 E---TNFLEKL 201 (225)
Q Consensus 194 ~---i~~~~~~ 201 (225)
. |.+.-++
T Consensus 233 ~~~~i~~~g~s 243 (269)
T PRK08181 233 HATIFEMNVES 243 (269)
T ss_pred CceEEecCCcc
Confidence 3 5555433
No 200
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.11 E-value=3.4e-10 Score=98.01 Aligned_cols=116 Identities=18% Similarity=0.362 Sum_probs=73.1
Q ss_pred eCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccC----ccCCcHHHHHHHHHHhcchhhhhhCCCEEEE
Q psy5910 39 EKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAG----YVGDDVESIIQKLLHECDYDVELAEQSIIYI 111 (225)
Q Consensus 39 ~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~i 111 (225)
...+++++|++||||+++|++++... +.+|+.++|..+.+.. +.|.. ...+........+.+....+++|||
T Consensus 161 ~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~-~~~~~~~~~~~~g~~~~a~~gtl~l 239 (445)
T TIGR02915 161 SDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYE-KGAFTGAVKQTLGKIEYAHGGTLFL 239 (445)
T ss_pred CCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCC-CCCcCCCccCCCCceeECCCCEEEE
Confidence 34589999999999999999999876 4689999998763210 01100 0000000011122344567899999
Q ss_pred cchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcc
Q psy5910 112 DEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNI 172 (225)
Q Consensus 112 DEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~ 172 (225)
||++.+... +|..|+++|+..... ..++......+ +.+|++|+.
T Consensus 240 ~~i~~l~~~-------------~q~~l~~~l~~~~~~--~~~~~~~~~~~--~rii~~~~~ 283 (445)
T TIGR02915 240 DEIGDLPLN-------------LQAKLLRFLQERVIE--RLGGREEIPVD--VRIVCATNQ 283 (445)
T ss_pred echhhCCHH-------------HHHHHHHHHhhCeEE--eCCCCceeeec--eEEEEecCC
Confidence 999999988 899999999864321 11111111112 777888877
No 201
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=99.11 E-value=5.4e-12 Score=104.88 Aligned_cols=179 Identities=18% Similarity=0.165 Sum_probs=90.8
Q ss_pred eeechhhHHhhheeeeEecccceEe-ecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910 6 HIIGQHETKKIVSVGVYNHYKRLFL-LKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD 84 (225)
Q Consensus 6 ~i~G~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~ 84 (225)
.|+|.+.+|..+.-.+. +.... ..+.......-|+||+|.||||||.|.+.+++..... ++.++......|....
T Consensus 25 ~i~g~~~iK~aill~L~---~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~-v~~~g~~~s~~gLta~ 100 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLF---GGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRS-VYTSGKGSSAAGLTAS 100 (331)
T ss_dssp TTTT-HHHHHHHCCCCT---T--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSE-EEEECCGSTCCCCCEE
T ss_pred cCcCcHHHHHHHHHHHH---hccccccccccccccccceeeccchhhhHHHHHHHHHhhCCce-EEECCCCcccCCccce
Confidence 57899999888866552 22111 1111112334599999999999999999888776443 3444433222222110
Q ss_pred cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910 85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV 164 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~ 164 (225)
-.......-+.-..|.+-.+.++|.+|||+|++... .+..|+++||....++...+....-..+ .
T Consensus 101 ~~~d~~~~~~~leaGalvlad~GiccIDe~dk~~~~-------------~~~~l~eaMEqq~isi~kagi~~~l~ar--~ 165 (331)
T PF00493_consen 101 VSRDPVTGEWVLEAGALVLADGGICCIDEFDKMKED-------------DRDALHEAMEQQTISIAKAGIVTTLNAR--C 165 (331)
T ss_dssp ECCCGGTSSECEEE-HHHHCTTSEEEECTTTT--CH-------------HHHHHHHHHHCSCEEECTSSSEEEEE-----
T ss_pred eccccccceeEEeCCchhcccCceeeecccccccch-------------HHHHHHHHHHcCeeccchhhhcccccch--h
Confidence 000000000000113334568899999999999876 6899999999877766554422222222 5
Q ss_pred eEEecCcceeeccC---c---cccHHHHHHhhcccc-ccccccccc
Q psy5910 165 FNIDTTNILFIAGG---A---FSGIENFIINRINQE-TNFLEKLNN 203 (225)
Q Consensus 165 ~~i~ttn~~~i~~~---~---~~~l~~al~~Rf~~~-i~~~~~~~~ 203 (225)
-++++.|..+-... + .-++++++++|||.. +-...++++
T Consensus 166 svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~ 211 (331)
T PF00493_consen 166 SVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEE 211 (331)
T ss_dssp EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-H
T ss_pred hhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccc
Confidence 67777776541110 0 015899999999988 444555543
No 202
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.10 E-value=5.5e-10 Score=92.75 Aligned_cols=65 Identities=11% Similarity=0.167 Sum_probs=48.5
Q ss_pred hCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccH
Q psy5910 104 AEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGI 183 (225)
Q Consensus 104 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l 183 (225)
...-|++||++|+|... ..++||+.||+ |..+ +++|.+|+. ++.|
T Consensus 131 ~~~kV~iI~~ae~m~~~-------------AaNaLLKtLEE-------------Pp~~--t~fiL~t~~-------~~~L 175 (342)
T PRK06964 131 GGARVVVLYPAEALNVA-------------AANALLKTLEE-------------PPPG--TVFLLVSAR-------IDRL 175 (342)
T ss_pred CCceEEEEechhhcCHH-------------HHHHHHHHhcC-------------CCcC--cEEEEEECC-------hhhC
Confidence 45579999999999977 89999999996 2233 444444444 5789
Q ss_pred HHHHHhhcccccccccccccc
Q psy5910 184 ENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 184 ~~al~~Rf~~~i~~~~~~~~~ 204 (225)
.+.+++|+ ..+.|+.|+.+.
T Consensus 176 LpTI~SRc-q~i~~~~~~~~~ 195 (342)
T PRK06964 176 LPTILSRC-RQFPMTVPAPEA 195 (342)
T ss_pred cHHHHhcC-EEEEecCCCHHH
Confidence 99999997 457787777654
No 203
>PRK15115 response regulator GlrR; Provisional
Probab=99.10 E-value=2.4e-10 Score=98.91 Aligned_cols=118 Identities=18% Similarity=0.363 Sum_probs=78.0
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccCccCCcHHHHHHHHHHh-----------cchhhhhhC
Q psy5910 40 KSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAGYVGDDVESIIQKLLHE-----------CDYDVELAE 105 (225)
Q Consensus 40 ~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----------~~~~~~~~~ 105 (225)
..+++++|++||||+++|+++++.. +.+|+.++|..+.+. ..-..+|.. ..+......
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~--------~~~~~lfg~~~~~~~~~~~~~~g~~~~a~ 228 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQ--------LLESELFGHARGAFTGAVSNREGLFQAAE 228 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHH--------HHHHHhcCCCcCCCCCCccCCCCcEEECC
Confidence 3578999999999999999999886 478999999876431 011111111 112334567
Q ss_pred CCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHH
Q psy5910 106 QSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIEN 185 (225)
Q Consensus 106 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~ 185 (225)
+++|||||++.+.+. .|..|+.+|+..... ..++... ...++.+|++|+. +++.
T Consensus 229 ~gtl~l~~i~~l~~~-------------~q~~L~~~l~~~~~~--~~g~~~~--~~~~~rii~~~~~---------~l~~ 282 (444)
T PRK15115 229 GGTLFLDEIGDMPAP-------------LQVKLLRVLQERKVR--PLGSNRD--IDIDVRIISATHR---------DLPK 282 (444)
T ss_pred CCEEEEEccccCCHH-------------HHHHHHHHHhhCCEE--eCCCCce--eeeeEEEEEeCCC---------CHHH
Confidence 899999999999988 899999999864321 1111110 1112677777776 5666
Q ss_pred HHHh-hc
Q psy5910 186 FIIN-RI 191 (225)
Q Consensus 186 al~~-Rf 191 (225)
.+.+ +|
T Consensus 283 ~~~~~~f 289 (444)
T PRK15115 283 AMARGEF 289 (444)
T ss_pred HHHcCCc
Confidence 6555 44
No 204
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.09 E-value=3.2e-10 Score=98.46 Aligned_cols=108 Identities=20% Similarity=0.356 Sum_probs=72.5
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccCccCCcHHHHHHHHHHh-----------cchhhhhhC
Q psy5910 40 KSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAGYVGDDVESIIQKLLHE-----------CDYDVELAE 105 (225)
Q Consensus 40 ~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----------~~~~~~~~~ 105 (225)
..+++++|++||||+++|++++... +.+|+.++|..+.+. ..-..+|.. ..+.+....
T Consensus 166 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~--------~~~~~lfg~~~~~~~~~~~~~~g~~~~a~ 237 (457)
T PRK11361 166 QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPES--------LLESELFGHEKGAFTGAQTLRQGLFERAN 237 (457)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHH--------HHHHHhcCCCCCCCCCCCCCCCCceEECC
Confidence 4579999999999999999998876 578999999876421 011111111 012334567
Q ss_pred CCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcc
Q psy5910 106 QSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNI 172 (225)
Q Consensus 106 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~ 172 (225)
+++|||||++.+.+. +|..|+.+|+..... ..++......+ +.+|++|+.
T Consensus 238 ~gtl~ld~i~~l~~~-------------~q~~L~~~l~~~~~~--~~~~~~~~~~~--~rii~~t~~ 287 (457)
T PRK11361 238 EGTLLLDEIGEMPLV-------------LQAKLLRILQEREFE--RIGGHQTIKVD--IRIIAATNR 287 (457)
T ss_pred CCEEEEechhhCCHH-------------HHHHHHHHHhcCcEE--eCCCCceeeec--eEEEEeCCC
Confidence 899999999999988 899999999864321 11111111112 788888877
No 205
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.08 E-value=8.5e-10 Score=91.01 Aligned_cols=127 Identities=14% Similarity=0.254 Sum_probs=76.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeE--EeccC--------------cccc-cCccCCcH-HHHHHHHHHhcchhhhh
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPII--VVDAT--------------SFTE-AGYVGDDV-ESIIQKLLHECDYDVEL 103 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~--~~~~~--------------~~~~-~~~~g~~~-~~~~~~~~~~~~~~~~~ 103 (225)
.+||+||+|+||+++|+.+|+.+.+.-- .-.|+ ++.. ....|..+ ...++.+.+........
T Consensus 26 A~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~~~~ 105 (325)
T PRK06871 26 ALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQHAQQ 105 (325)
T ss_pred eEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhhcccc
Confidence 5679999999999999999998844210 00111 1100 00011110 12233333332111123
Q ss_pred hCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccH
Q psy5910 104 AEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGI 183 (225)
Q Consensus 104 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l 183 (225)
...-|++||++|+|... ..++|++.||+ |..+ .++|.+|+. ++.+
T Consensus 106 g~~KV~iI~~a~~m~~~-------------AaNaLLKtLEE-------------Pp~~--~~fiL~t~~-------~~~l 150 (325)
T PRK06871 106 GGNKVVYIQGAERLTEA-------------AANALLKTLEE-------------PRPN--TYFLLQADL-------SAAL 150 (325)
T ss_pred CCceEEEEechhhhCHH-------------HHHHHHHHhcC-------------CCCC--eEEEEEECC-------hHhC
Confidence 35579999999999977 79999999997 3333 444444444 5789
Q ss_pred HHHHHhhcccccccccccccc
Q psy5910 184 ENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 184 ~~al~~Rf~~~i~~~~~~~~~ 204 (225)
.+.+++|. ..+.|+.|+.+.
T Consensus 151 lpTI~SRC-~~~~~~~~~~~~ 170 (325)
T PRK06871 151 LPTIYSRC-QTWLIHPPEEQQ 170 (325)
T ss_pred chHHHhhc-eEEeCCCCCHHH
Confidence 99999995 336777776554
No 206
>PRK12377 putative replication protein; Provisional
Probab=99.07 E-value=2.2e-10 Score=91.21 Aligned_cols=116 Identities=21% Similarity=0.265 Sum_probs=70.0
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCccccc---CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcch
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEA---GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEI 114 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi 114 (225)
.+++|+||||||||+||.+|++.+ +..+..++..++... .|.... .....++ ......+|+|||+
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~---~~~~~l~------~l~~~dLLiIDDl 172 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQ---SGEKFLQ------ELCKVDLLVLDEI 172 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccc---hHHHHHH------HhcCCCEEEEcCC
Confidence 578999999999999999999988 566666666554320 011000 0011111 1246789999999
Q ss_pred hhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcc
Q psy5910 115 DKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRIN 192 (225)
Q Consensus 115 d~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~ 192 (225)
...... +..+..|..+++..... . .-+|.|||..+--. .+.+.+.+.+|+.
T Consensus 173 g~~~~s-----------~~~~~~l~~ii~~R~~~------------~--~ptiitSNl~~~~l--~~~~~~ri~dRl~ 223 (248)
T PRK12377 173 GIQRET-----------KNEQVVLNQIIDRRTAS------------M--RSVGMLTNLNHEAM--STLLGERVMDRMT 223 (248)
T ss_pred CCCCCC-----------HHHHHHHHHHHHHHHhc------------C--CCEEEEcCCCHHHH--HHHhhHHHHHHHh
Confidence 765432 11567888888864211 1 34577888732111 1246667888874
No 207
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.07 E-value=3e-10 Score=97.76 Aligned_cols=128 Identities=17% Similarity=0.311 Sum_probs=74.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccCccCCcHH-HHHHHHHHhcchhhhhhCCCEEEEcchhh
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAGYVGDDVE-SIIQKLLHECDYDVELAEQSIIYIDEIDK 116 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~vl~iDEid~ 116 (225)
.+++|+||+|+|||+|++++++.+ +..++++++..+... +... .. ... ..|.. ......+++|||++.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~-~~~~-l~~~~~-~~f~~-----~~~~~dvLiIDDiq~ 213 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEH-LVSA-IRSGEM-QRFRQ-----FYRNVDALFIEDIEV 213 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHH-HHHH-HhcchH-HHHHH-----HcccCCEEEEcchhh
Confidence 468899999999999999999876 567777776554320 1000 00 000 01111 123567999999999
Q ss_pred hcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcc--cc
Q psy5910 117 ISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRIN--QE 194 (225)
Q Consensus 117 l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~--~~ 194 (225)
+..+. ..+..|+.+++.... .. ..+|.|++..- .....+++.+++||. ..
T Consensus 214 l~~k~-----------~~qeelf~l~N~l~~------------~~--k~IIlts~~~p---~~l~~l~~rL~SR~~~Gl~ 265 (445)
T PRK12422 214 FSGKG-----------ATQEEFFHTFNSLHT------------EG--KLIVISSTCAP---QDLKAMEERLISRFEWGIA 265 (445)
T ss_pred hcCCh-----------hhHHHHHHHHHHHHH------------CC--CcEEEecCCCH---HHHhhhHHHHHhhhcCCeE
Confidence 87541 246666666653210 01 22333333200 001357899999995 45
Q ss_pred cccccccccc
Q psy5910 195 TNFLEKLNNN 204 (225)
Q Consensus 195 i~~~~~~~~~ 204 (225)
+.+..|+.+.
T Consensus 266 ~~l~~pd~e~ 275 (445)
T PRK12422 266 IPLHPLTKEG 275 (445)
T ss_pred EecCCCCHHH
Confidence 7777777654
No 208
>PRK04132 replication factor C small subunit; Provisional
Probab=99.07 E-value=4.3e-10 Score=102.56 Aligned_cols=126 Identities=22% Similarity=0.229 Sum_probs=87.0
Q ss_pred ceeeeCCcEEEEc--CCCCcHHHHHHHHHHHh-----CCCeEEeccCcccccCccCCcHHHHHHHHHHhcc--hhhhhhC
Q psy5910 35 NIYLEKSNILLVG--PTGCGKTLMVKTLAKII-----NVPIIVVDATSFTEAGYVGDDVESIIQKLLHECD--YDVELAE 105 (225)
Q Consensus 35 ~~~~~~~~vLl~G--p~GtGKT~la~~ia~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~ 105 (225)
+++.|.-+-+..| |++.||||+|+++|+.+ +.+++.+|+++... ...++...+.+. ..+....
T Consensus 559 ~~~~~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg--------id~IR~iIk~~a~~~~~~~~~ 630 (846)
T PRK04132 559 DLHVPGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG--------INVIREKVKEFARTKPIGGAS 630 (846)
T ss_pred EeccCchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc--------HHHHHHHHHHHHhcCCcCCCC
Confidence 3445555667789 99999999999999997 55789999987421 112333332210 0000112
Q ss_pred CCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHH
Q psy5910 106 QSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIEN 185 (225)
Q Consensus 106 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~ 185 (225)
..|++|||+|.+... .|++|++.||... .+ +.+|.++|. +..+.+
T Consensus 631 ~KVvIIDEaD~Lt~~-------------AQnALLk~lEep~-------------~~--~~FILi~N~-------~~kIi~ 675 (846)
T PRK04132 631 FKIIFLDEADALTQD-------------AQQALRRTMEMFS-------------SN--VRFILSCNY-------SSKIIE 675 (846)
T ss_pred CEEEEEECcccCCHH-------------HHHHHHHHhhCCC-------------CC--eEEEEEeCC-------hhhCch
Confidence 369999999999876 8999999999622 22 556666666 568899
Q ss_pred HHHhhcccccccccccccc
Q psy5910 186 FIINRINQETNFLEKLNNN 204 (225)
Q Consensus 186 al~~Rf~~~i~~~~~~~~~ 204 (225)
++++|+ ..+.|+.++.++
T Consensus 676 tIrSRC-~~i~F~~ls~~~ 693 (846)
T PRK04132 676 PIQSRC-AIFRFRPLRDED 693 (846)
T ss_pred HHhhhc-eEEeCCCCCHHH
Confidence 999994 458888887654
No 209
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.06 E-value=1.3e-09 Score=89.66 Aligned_cols=127 Identities=20% Similarity=0.266 Sum_probs=76.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEE----------ecc---Cccc----ccCccCCc-----HHHHHHHHHHhcch
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIV----------VDA---TSFT----EAGYVGDD-----VESIIQKLLHECDY 99 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~----------~~~---~~~~----~~~~~g~~-----~~~~~~~~~~~~~~ 99 (225)
.+||+||+|+||+++|.++|+.+-+.-.. +.. .++. .+...|.+ ....++.+.+....
T Consensus 28 A~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~~~~ 107 (319)
T PRK08769 28 GLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQKLAL 107 (319)
T ss_pred eEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHHHhh
Confidence 47799999999999999999887432100 000 0110 00011110 01223334333211
Q ss_pred hhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCc
Q psy5910 100 DVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGA 179 (225)
Q Consensus 100 ~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~ 179 (225)
.......-|++||++|+|... ..++|++.||+ |..+ ..+|.+++.
T Consensus 108 ~p~~g~~kV~iI~~ae~m~~~-------------AaNaLLKtLEE-------------Pp~~--~~fiL~~~~------- 152 (319)
T PRK08769 108 TPQYGIAQVVIVDPADAINRA-------------ACNALLKTLEE-------------PSPG--RYLWLISAQ------- 152 (319)
T ss_pred CcccCCcEEEEeccHhhhCHH-------------HHHHHHHHhhC-------------CCCC--CeEEEEECC-------
Confidence 112234579999999999977 79999999997 2233 444444444
Q ss_pred cccHHHHHHhhcccccccccccccc
Q psy5910 180 FSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 180 ~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
++.+.+.|++|+ ..+.|+.|+.++
T Consensus 153 ~~~lLpTIrSRC-q~i~~~~~~~~~ 176 (319)
T PRK08769 153 PARLPATIRSRC-QRLEFKLPPAHE 176 (319)
T ss_pred hhhCchHHHhhh-eEeeCCCcCHHH
Confidence 568999999995 336777776654
No 210
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.05 E-value=1.7e-10 Score=101.44 Aligned_cols=128 Identities=15% Similarity=0.245 Sum_probs=77.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh-----CCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhh
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKII-----NVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDK 116 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~ 116 (225)
.++|||++|||||.|+++|++.+ +..++++++.++.. .+...-....... |.+ ......+|+||+++.
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~-el~~al~~~~~~~-f~~-----~y~~~DLLlIDDIq~ 388 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTN-EFINSIRDGKGDS-FRR-----RYREMDILLVDDIQF 388 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHH-HHHHHHHhccHHH-HHH-----HhhcCCEEEEehhcc
Confidence 58899999999999999999987 45677887766542 1211000000111 111 123567999999999
Q ss_pred hcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccc--
Q psy5910 117 ISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQE-- 194 (225)
Q Consensus 117 l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~-- 194 (225)
+..+. ..+..|+.+++.... .+ ..+|.|+|... .....+++.|++||.--
T Consensus 389 l~gke-----------~tqeeLF~l~N~l~e------------~g--k~IIITSd~~P---~eL~~l~~rL~SRf~~GLv 440 (617)
T PRK14086 389 LEDKE-----------STQEEFFHTFNTLHN------------AN--KQIVLSSDRPP---KQLVTLEDRLRNRFEWGLI 440 (617)
T ss_pred ccCCH-----------HHHHHHHHHHHHHHh------------cC--CCEEEecCCCh---HhhhhccHHHHhhhhcCce
Confidence 87552 245667777764321 01 23344555511 11235788999999665
Q ss_pred cccccccccc
Q psy5910 195 TNFLEKLNNN 204 (225)
Q Consensus 195 i~~~~~~~~~ 204 (225)
+.+..|+.+.
T Consensus 441 v~I~~PD~Et 450 (617)
T PRK14086 441 TDVQPPELET 450 (617)
T ss_pred EEcCCCCHHH
Confidence 6777777665
No 211
>KOG0480|consensus
Probab=99.04 E-value=6.4e-11 Score=102.46 Aligned_cols=181 Identities=17% Similarity=0.138 Sum_probs=108.6
Q ss_pred cceeechhhHHhhheeeeEecccceEeecccceeee-CCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCcc
Q psy5910 4 DRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLE-KSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYV 82 (225)
Q Consensus 4 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~-~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~ 82 (225)
--.|+|.+.+|.-+.-.+ +++.+.....+.+.. .-+|+++|.||||||.+.+++++.++..++ .++.....+|..
T Consensus 344 ~PsIyGhe~VK~GilL~L---fGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vY-tsGkaSSaAGLT 419 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLSL---FGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVY-TSGKASSAAGLT 419 (764)
T ss_pred CccccchHHHHhhHHHHH---hCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceE-ecCcccccccce
Confidence 346889998887775433 444444333222222 348999999999999999999998876544 333332222322
Q ss_pred CCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCC
Q psy5910 83 GDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNP 162 (225)
Q Consensus 83 g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~ 162 (225)
-.-+..-...-|.-..|.+--+.++|=.|||+|+|..+ -|.+++++||+-..++...+-...-..+
T Consensus 420 aaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~-------------dqvAihEAMEQQtISIaKAGv~aTLnAR- 485 (764)
T KOG0480|consen 420 AAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVK-------------DQVAIHEAMEQQTISIAKAGVVATLNAR- 485 (764)
T ss_pred EEEEecCCCCceeeecCcEEEccCceEEechhcccChH-------------hHHHHHHHHHhheehheecceEEeecch-
Confidence 11000000001111113333468899999999999965 4899999999877776655543332222
Q ss_pred ceeEEecCcceee-cc------CccccHHHHHHhhcccc-cccccccccc
Q psy5910 163 QVFNIDTTNILFI-AG------GAFSGIENFIINRINQE-TNFLEKLNNN 204 (225)
Q Consensus 163 ~~~~i~ttn~~~i-~~------~~~~~l~~al~~Rf~~~-i~~~~~~~~~ 204 (225)
--+++++|.+-- .+ .| =.|.+++++|||.. |-...|++..
T Consensus 486 -tSIlAAANPv~GhYdR~ktl~eN-i~msApimSRFDL~FiLlD~~nE~~ 533 (764)
T KOG0480|consen 486 -TSILAAANPVGGHYDRKKTLREN-INMSAPIMSRFDLFFILLDDCNEVV 533 (764)
T ss_pred -hhhhhhcCCcCCccccccchhhh-cCCCchhhhhhcEEEEEecCCchHH
Confidence 445566665310 00 01 25899999999988 6666666543
No 212
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.03 E-value=1.3e-09 Score=90.50 Aligned_cols=126 Identities=10% Similarity=0.148 Sum_probs=77.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCe--EEeccC--------------cccc---cCc-cCCcHHHHHHHHHHhcchhh
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPI--IVVDAT--------------SFTE---AGY-VGDDVESIIQKLLHECDYDV 101 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~--~~~~~~--------------~~~~---~~~-~g~~~~~~~~~~~~~~~~~~ 101 (225)
.+||+||+|+||+++|.++|+.+-+.- -.-.|+ ++.. .+- ..-.+ .-++.+.+......
T Consensus 26 A~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~i-dqiR~l~~~~~~~~ 104 (334)
T PRK07993 26 ALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGV-DAVREVTEKLYEHA 104 (334)
T ss_pred EEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCH-HHHHHHHHHHhhcc
Confidence 567999999999999999999884310 000111 1100 000 00111 12333333221111
Q ss_pred hhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccc
Q psy5910 102 ELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFS 181 (225)
Q Consensus 102 ~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~ 181 (225)
.....-|++||++|+|... ..|+|++.||+ |..+ .++|.+++. ++
T Consensus 105 ~~g~~kV~iI~~ae~m~~~-------------AaNaLLKtLEE-------------Pp~~--t~fiL~t~~-------~~ 149 (334)
T PRK07993 105 RLGGAKVVWLPDAALLTDA-------------AANALLKTLEE-------------PPEN--TWFFLACRE-------PA 149 (334)
T ss_pred ccCCceEEEEcchHhhCHH-------------HHHHHHHHhcC-------------CCCC--eEEEEEECC-------hh
Confidence 2345679999999999977 89999999997 2233 444444433 57
Q ss_pred cHHHHHHhhcccccccccccccc
Q psy5910 182 GIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 182 ~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
.+.+.+++|.. .+.|+.|+.+.
T Consensus 150 ~lLpTIrSRCq-~~~~~~~~~~~ 171 (334)
T PRK07993 150 RLLATLRSRCR-LHYLAPPPEQY 171 (334)
T ss_pred hChHHHHhccc-cccCCCCCHHH
Confidence 89999999975 47888877664
No 213
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=99.02 E-value=1.6e-10 Score=100.43 Aligned_cols=131 Identities=18% Similarity=0.344 Sum_probs=92.2
Q ss_pred eCCcEEEEcCCCCcHHHHHHHHHHHh--CCCeEEeccCcccc----cCccCCcHHHHHHHHHHh-cchhhhhhCCCEEEE
Q psy5910 39 EKSNILLVGPTGCGKTLMVKTLAKII--NVPIIVVDATSFTE----AGYVGDDVESIIQKLLHE-CDYDVELAEQSIIYI 111 (225)
Q Consensus 39 ~~~~vLl~Gp~GtGKT~la~~ia~~~--~~~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~vl~i 111 (225)
..-++++.|+|||||-.++|++++.. ..||+.+||..+.+ +.+.|..... .+..+.+ ..+.+....++.+|+
T Consensus 335 ~~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~Ga-fTga~~kG~~g~~~~A~gGtlFl 413 (606)
T COG3284 335 TDLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGA-FTGARRKGYKGKLEQADGGTLFL 413 (606)
T ss_pred cCCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccc-cccchhccccccceecCCCccHH
Confidence 34589999999999999999999877 56799999977643 2233332111 2222222 234566778999999
Q ss_pred cchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHh-h
Q psy5910 112 DEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIIN-R 190 (225)
Q Consensus 112 DEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~-R 190 (225)
|||..|+-. +|..|+++|++... ...++.. .... +.+|++|+. +|..-+.. |
T Consensus 414 deIgd~p~~-------------~Qs~LLrVl~e~~v--~p~g~~~-~~vd--irvi~ath~---------dl~~lv~~g~ 466 (606)
T COG3284 414 DEIGDMPLA-------------LQSRLLRVLQEGVV--TPLGGTR-IKVD--IRVIAATHR---------DLAQLVEQGR 466 (606)
T ss_pred HHhhhchHH-------------HHHHHHHHHhhCce--eccCCcc-eeEE--EEEEeccCc---------CHHHHHHcCC
Confidence 999999977 89999999987433 3344444 3333 999999999 77777766 7
Q ss_pred ccccccc
Q psy5910 191 INQETNF 197 (225)
Q Consensus 191 f~~~i~~ 197 (225)
|...++|
T Consensus 467 fredLyy 473 (606)
T COG3284 467 FREDLYY 473 (606)
T ss_pred chHHHHH
Confidence 7554443
No 214
>KOG0478|consensus
Probab=99.01 E-value=1.3e-10 Score=101.30 Aligned_cols=178 Identities=19% Similarity=0.208 Sum_probs=109.7
Q ss_pred cceeechhhHHhhheeeeEecccceEeeccc-ceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccc--cC
Q psy5910 4 DRHIIGQHETKKIVSVGVYNHYKRLFLLKSK-NIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTE--AG 80 (225)
Q Consensus 4 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~--~~ 80 (225)
.-.|+|++++|+-|.-.+ +++.+.-... +-....-+|||+|.||||||.+.+.+++.+....+.--.+.-.. ..
T Consensus 428 APsIye~edvKkglLLqL---fGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTa 504 (804)
T KOG0478|consen 428 APSIYELEDVKKGLLLQL---FGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTA 504 (804)
T ss_pred chhhhcccchhhhHHHHH---hcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhccee
Confidence 446889999998875544 3332222111 11122348999999999999999999999865443321111100 01
Q ss_pred ccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCC
Q psy5910 81 YVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQ 160 (225)
Q Consensus 81 ~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~ 160 (225)
|+-.+.. -+++..+ .+.+-...+++=.|||+|+|..+ .++.|++.|+.-..++...+.......
T Consensus 505 yVtrd~d--tkqlVLe-sGALVLSD~GiCCIDEFDKM~dS-------------trSvLhEvMEQQTvSIAKAGII~sLNA 568 (804)
T KOG0478|consen 505 YVTKDPD--TRQLVLE-SGALVLSDNGICCIDEFDKMSDS-------------TRSVLHEVMEQQTLSIAKAGIIASLNA 568 (804)
T ss_pred eEEecCc--cceeeee-cCcEEEcCCceEEchhhhhhhHH-------------HHHHHHHHHHHhhhhHhhcceeeeccc
Confidence 1111100 0111111 23334568899999999999866 789999999988888877765544444
Q ss_pred CCceeEEecCcceeeccC-------ccccHHHHHHhhcccc-ccccccccc
Q psy5910 161 NPQVFNIDTTNILFIAGG-------AFSGIENFIINRINQE-TNFLEKLNN 203 (225)
Q Consensus 161 ~~~~~~i~ttn~~~i~~~-------~~~~l~~al~~Rf~~~-i~~~~~~~~ 203 (225)
+ .-++++.|.+---.+ | =.|++.+++|||.. +-+..|++.
T Consensus 569 R--~SVLAaANP~~skynp~k~i~eN-I~LpptLLSRFDLIylllD~~DE~ 616 (804)
T KOG0478|consen 569 R--CSVLAAANPIRSKYNPNKSIIEN-INLPPTLLSRFDLIFLLLDKPDER 616 (804)
T ss_pred c--ceeeeeeccccccCCCCCchhhc-cCCChhhhhhhcEEEEEecCcchh
Confidence 4 566677765311000 1 15899999999998 777777765
No 215
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.01 E-value=6e-10 Score=96.04 Aligned_cols=130 Identities=15% Similarity=0.293 Sum_probs=73.8
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHh-----CCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchh
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKII-----NVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEID 115 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid 115 (225)
.+++||||||||||+|++++++.+ +..++++++.++... +...-.......+... -.....+|+|||++
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~-~~~~~~~~~~~~f~~~-----~~~~~dvLlIDDi~ 204 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLND-LVDSMKEGKLNEFREK-----YRKKVDVLLIDDVQ 204 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHH-HHHHHhcccHHHHHHH-----HHhcCCEEEEechh
Confidence 368899999999999999999986 346777777654321 1000000001111111 01247799999999
Q ss_pred hhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccc-
Q psy5910 116 KISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQE- 194 (225)
Q Consensus 116 ~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~- 194 (225)
.+.... ..+..|+..++.... . . ..+++.+.+.+- ....+.+.+.+||.--
T Consensus 205 ~l~~~~-----------~~q~elf~~~n~l~~-----------~-~-k~iIitsd~~p~----~l~~l~~rL~SR~~~gl 256 (440)
T PRK14088 205 FLIGKT-----------GVQTELFHTFNELHD-----------S-G-KQIVICSDREPQ----KLSEFQDRLVSRFQMGL 256 (440)
T ss_pred hhcCcH-----------HHHHHHHHHHHHHHH-----------c-C-CeEEEECCCCHH----HHHHHHHHHhhHHhcCc
Confidence 886441 145666666653210 0 1 033333333310 1134677888898543
Q ss_pred -cccccccccc
Q psy5910 195 -TNFLEKLNNN 204 (225)
Q Consensus 195 -i~~~~~~~~~ 204 (225)
+.+..|+.+.
T Consensus 257 ~v~i~~pd~e~ 267 (440)
T PRK14088 257 VAKLEPPDEET 267 (440)
T ss_pred eEeeCCCCHHH
Confidence 7788888765
No 216
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=99.00 E-value=3.1e-09 Score=88.05 Aligned_cols=126 Identities=17% Similarity=0.213 Sum_probs=76.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCC-------------------------eEEeccCcc-cccCc--cCCcHHHHHHHH
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVP-------------------------IIVVDATSF-TEAGY--VGDDVESIIQKL 93 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~-------------------------~~~~~~~~~-~~~~~--~g~~~~~~~~~~ 93 (225)
.+||+||+|+|||++|+.+|+.+.+. ++.+++..- .+.+. ..-. ...++.+
T Consensus 23 A~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~-id~iR~l 101 (325)
T PRK08699 23 AWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIK-IDAVREI 101 (325)
T ss_pred EEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcC-HHHHHHH
Confidence 57799999999999999999987431 222222110 00000 0001 1223444
Q ss_pred HHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcce
Q psy5910 94 LHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNIL 173 (225)
Q Consensus 94 ~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~ 173 (225)
.+............|+++|+++.+.+. .++.|++.|++.. .. ..+++ +|+.
T Consensus 102 ~~~~~~~p~~~~~kV~iiEp~~~Ld~~-------------a~naLLk~LEep~-------------~~-~~~Il-vth~- 152 (325)
T PRK08699 102 IDNVYLTSVRGGLRVILIHPAESMNLQ-------------AANSLLKVLEEPP-------------PQ-VVFLL-VSHA- 152 (325)
T ss_pred HHHHhhCcccCCceEEEEechhhCCHH-------------HHHHHHHHHHhCc-------------CC-CEEEE-EeCC-
Confidence 433322222345679999999999987 7999999998631 11 13444 4433
Q ss_pred eeccCccccHHHHHHhhcccccccccccccc
Q psy5910 174 FIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 174 ~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
++.+.+.+++|+ ..+.|+.|+.+.
T Consensus 153 ------~~~ll~ti~SRc-~~~~~~~~~~~~ 176 (325)
T PRK08699 153 ------ADKVLPTIKSRC-RKMVLPAPSHEE 176 (325)
T ss_pred ------hHhChHHHHHHh-hhhcCCCCCHHH
Confidence 468889999985 347777776654
No 217
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=99.00 E-value=3.4e-10 Score=85.95 Aligned_cols=116 Identities=18% Similarity=0.295 Sum_probs=59.5
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCccccc---CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcc
Q psy5910 40 KSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEA---GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDE 113 (225)
Q Consensus 40 ~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDE 113 (225)
..+++|+||||||||.||.++++.+ +.++.+++..++... .+........+.. .....+|+|||
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~----------l~~~dlLilDD 116 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKR----------LKRVDLLILDD 116 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHH----------HHTSSCEEEET
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCc----------cccccEecccc
Confidence 3589999999999999999999876 777888877665321 1111111121211 13567999999
Q ss_pred hhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCc---cccHHHHHHhh
Q psy5910 114 IDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGA---FSGIENFIINR 190 (225)
Q Consensus 114 id~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~---~~~l~~al~~R 190 (225)
+...... +...+.|.++++.... + --+|.|||..+-.... -..+.+++++|
T Consensus 117 lG~~~~~-----------~~~~~~l~~ii~~R~~-------------~--~~tIiTSN~~~~~l~~~~~d~~~a~aildR 170 (178)
T PF01695_consen 117 LGYEPLS-----------EWEAELLFEIIDERYE-------------R--KPTIITSNLSPSELEEVLGDRALAEAILDR 170 (178)
T ss_dssp CTSS--------------HHHHHCTHHHHHHHHH-------------T---EEEEEESS-HHHHHT--------------
T ss_pred cceeeec-----------ccccccchhhhhHhhc-------------c--cCeEeeCCCchhhHhhcccccccccccccc
Confidence 8764432 2245677888875321 1 2356688884322211 12355666666
Q ss_pred c
Q psy5910 191 I 191 (225)
Q Consensus 191 f 191 (225)
+
T Consensus 171 l 171 (178)
T PF01695_consen 171 L 171 (178)
T ss_dssp -
T ss_pred c
Confidence 5
No 218
>PRK09183 transposase/IS protein; Provisional
Probab=98.99 E-value=7.4e-10 Score=89.07 Aligned_cols=130 Identities=17% Similarity=0.216 Sum_probs=75.0
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhh
Q psy5910 40 KSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDK 116 (225)
Q Consensus 40 ~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~ 116 (225)
..+++|+||||||||+||.+++..+ +..+.+++..++... +........+...+.. ....+.+++|||+..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~-l~~a~~~~~~~~~~~~-----~~~~~dlLiiDdlg~ 175 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQ-LSTAQRQGRYKTTLQR-----GVMAPRLLIIDEIGY 175 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHH-HHHHHHCCcHHHHHHH-----HhcCCCEEEEccccc
Confidence 3578899999999999999998764 556666665444210 1000000001112211 013567999999987
Q ss_pred hcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCc----cccHHHHHHhhcc
Q psy5910 117 ISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGA----FSGIENFIINRIN 192 (225)
Q Consensus 117 l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~----~~~l~~al~~Rf~ 192 (225)
..... ...+.|+++++.... + -.+|.|||..+-.+.. -..+.+++++|+-
T Consensus 176 ~~~~~-----------~~~~~lf~li~~r~~-------------~--~s~iiTsn~~~~~w~~~~~~d~~~~~ai~dRl~ 229 (259)
T PRK09183 176 LPFSQ-----------EEANLFFQVIAKRYE-------------K--GSMILTSNLPFGQWDQTFAGDAALTSAMLDRLL 229 (259)
T ss_pred CCCCh-----------HHHHHHHHHHHHHHh-------------c--CcEEEecCCCHHHHHHHhcCchhHHHHHHHHHh
Confidence 65442 135678888865321 1 2357788887544321 1246678999874
Q ss_pred cc---ccccccc
Q psy5910 193 QE---TNFLEKL 201 (225)
Q Consensus 193 ~~---i~~~~~~ 201 (225)
.. |.+.-++
T Consensus 230 ~~~~~i~~~g~s 241 (259)
T PRK09183 230 HHSHVVQIKGES 241 (259)
T ss_pred cceEEEeecCCC
Confidence 43 5555443
No 219
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.97 E-value=3.8e-09 Score=86.97 Aligned_cols=127 Identities=15% Similarity=0.190 Sum_probs=76.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEE-ecc--------------Cccc--ccCccCCcH-HHHHHHHHHhcchhhhh
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIV-VDA--------------TSFT--EAGYVGDDV-ESIIQKLLHECDYDVEL 103 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~-~~~--------------~~~~--~~~~~g~~~-~~~~~~~~~~~~~~~~~ 103 (225)
.+||+||.|+||+++|+.+|+.+-+.-.. -.| .++. .+...|..+ ...++.+.+........
T Consensus 27 A~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~~~~~ 106 (319)
T PRK06090 27 ALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQESSQL 106 (319)
T ss_pred eEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHhhCccc
Confidence 57799999999999999999988432100 001 1110 000011111 11223333222111122
Q ss_pred hCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccH
Q psy5910 104 AEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGI 183 (225)
Q Consensus 104 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l 183 (225)
...-|++||++|+|... ..++|++.||+ |..+ .++|.+|+. ++.+
T Consensus 107 ~~~kV~iI~~ae~m~~~-------------AaNaLLKtLEE-------------Pp~~--t~fiL~t~~-------~~~l 151 (319)
T PRK06090 107 NGYRLFVIEPADAMNES-------------ASNALLKTLEE-------------PAPN--CLFLLVTHN-------QKRL 151 (319)
T ss_pred CCceEEEecchhhhCHH-------------HHHHHHHHhcC-------------CCCC--eEEEEEECC-------hhhC
Confidence 34579999999999977 79999999997 3333 444444433 5688
Q ss_pred HHHHHhhcccccccccccccc
Q psy5910 184 ENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 184 ~~al~~Rf~~~i~~~~~~~~~ 204 (225)
.+.+++|.. .+.|+.|+.+.
T Consensus 152 LpTI~SRCq-~~~~~~~~~~~ 171 (319)
T PRK06090 152 LPTIVSRCQ-QWVVTPPSTAQ 171 (319)
T ss_pred hHHHHhcce-eEeCCCCCHHH
Confidence 999999953 47777777654
No 220
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.95 E-value=1.9e-09 Score=93.84 Aligned_cols=115 Identities=18% Similarity=0.316 Sum_probs=71.3
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccC----ccCCcHHHHHHHHHHhcchhhhhhCCCEEEEc
Q psy5910 40 KSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAG----YVGDDVESIIQKLLHECDYDVELAEQSIIYID 112 (225)
Q Consensus 40 ~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iD 112 (225)
..++++.|++||||+++|++++... +.+|+.++|..+.+.- ..|.. ...+........+......+++||||
T Consensus 157 ~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~-~~~~~~~~~~~~g~~~~a~~gtl~l~ 235 (463)
T TIGR01818 157 DITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHE-KGAFTGANTRRQGRFEQADGGTLFLD 235 (463)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCC-CCCCCCcccCCCCcEEECCCCeEEEE
Confidence 3478999999999999999999876 5689999998763210 01110 00000000011122345578999999
Q ss_pred chhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcc
Q psy5910 113 EIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNI 172 (225)
Q Consensus 113 Eid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~ 172 (225)
|++.+... +|..|+++|+..... ..++......+ +.+|++|+.
T Consensus 236 ei~~l~~~-------------~q~~ll~~l~~~~~~--~~~~~~~~~~~--~rii~~~~~ 278 (463)
T TIGR01818 236 EIGDMPLD-------------AQTRLLRVLADGEFY--RVGGRTPIKVD--VRIVAATHQ 278 (463)
T ss_pred chhhCCHH-------------HHHHHHHHHhcCcEE--ECCCCceeeee--eEEEEeCCC
Confidence 99999987 899999999864321 11111111112 677777776
No 221
>PRK05642 DNA replication initiation factor; Validated
Probab=98.95 E-value=3.3e-09 Score=84.11 Aligned_cols=120 Identities=13% Similarity=0.215 Sum_probs=71.0
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhh
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKI 117 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l 117 (225)
.+++|+||+|||||+|++++++.+ +..+++++..++... ...+.+.. ....+++||+++.+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~----------~~~~~~~~------~~~d~LiiDDi~~~ 109 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR----------GPELLDNL------EQYELVCLDDLDVI 109 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh----------hHHHHHhh------hhCCEEEEechhhh
Confidence 578899999999999999999765 556777776655320 01111111 23358999999988
Q ss_pred cccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccc--c
Q psy5910 118 SKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQE--T 195 (225)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~--i 195 (225)
.... ..+..|+.+++.... +...+++.++..+ .....+.+.+++||.-- +
T Consensus 110 ~~~~-----------~~~~~Lf~l~n~~~~-------------~g~~ilits~~~p----~~l~~~~~~L~SRl~~gl~~ 161 (234)
T PRK05642 110 AGKA-----------DWEEALFHLFNRLRD-------------SGRRLLLAASKSP----RELPIKLPDLKSRLTLALVF 161 (234)
T ss_pred cCCh-----------HHHHHHHHHHHHHHh-------------cCCEEEEeCCCCH----HHcCccCccHHHHHhcCeee
Confidence 6542 135667777764210 0113444443331 01234568899998533 5
Q ss_pred ccccccccc
Q psy5910 196 NFLEKLNNN 204 (225)
Q Consensus 196 ~~~~~~~~~ 204 (225)
.+..|+.+.
T Consensus 162 ~l~~~~~e~ 170 (234)
T PRK05642 162 QMRGLSDED 170 (234)
T ss_pred ecCCCCHHH
Confidence 556655544
No 222
>KOG0482|consensus
Probab=98.95 E-value=2.2e-10 Score=96.97 Aligned_cols=178 Identities=16% Similarity=0.154 Sum_probs=109.9
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceee-eCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYL-EKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVG 83 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~-~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g 83 (225)
-.|+|.+++|+.|.-.+. ++.....+.+... ..-+|+|.|.||+.||.|.+.|.+......+.---++. =+|
T Consensus 342 PEIyGheDVKKaLLLlLV---Ggvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSS----GVG 414 (721)
T KOG0482|consen 342 PEIYGHEDVKKALLLLLV---GGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSS----GVG 414 (721)
T ss_pred hhhccchHHHHHHHHHhh---CCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCC----ccc
Confidence 358999999998876552 2222221111112 22389999999999999999999987665544322211 011
Q ss_pred CcH---HHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCC
Q psy5910 84 DDV---ESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQ 160 (225)
Q Consensus 84 ~~~---~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~ 160 (225)
-+. ...++.-.--..+.+-.+.++|-.|||+|++... =..++.++||+...++...+....-..
T Consensus 415 LTAAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~-------------DRtAIHEVMEQQTISIaKAGI~TtLNA 481 (721)
T KOG0482|consen 415 LTAAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDES-------------DRTAIHEVMEQQTISIAKAGINTTLNA 481 (721)
T ss_pred cchhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhh-------------hhHHHHHHHHhhhhhhhhhccccchhh
Confidence 110 0000000000113334567889999999999866 357888889887777766665554444
Q ss_pred CCceeEEecCcceeeccC---cc---ccHHHHHHhhcccc-cccccccccc
Q psy5910 161 NPQVFNIDTTNILFIAGG---AF---SGIENFIINRINQE-TNFLEKLNNN 204 (225)
Q Consensus 161 ~~~~~~i~ttn~~~i~~~---~~---~~l~~al~~Rf~~~-i~~~~~~~~~ 204 (225)
+ ..++++.|..|--=+ ++ =+||.|+++|||.. +--..|+.+.
T Consensus 482 R--~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~ 530 (721)
T KOG0482|consen 482 R--TSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDN 530 (721)
T ss_pred h--HHhhhhcCccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccc
Confidence 4 777888888652111 11 25999999999998 6666666654
No 223
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.94 E-value=7.7e-09 Score=71.95 Aligned_cols=105 Identities=23% Similarity=0.277 Sum_probs=59.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhccccc
Q psy5910 43 ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTD 122 (225)
Q Consensus 43 vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~ 122 (225)
|.|+||||+|||++|+.+++.+...+.......+ |.... -...+.-. ....++++||+.......
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~v----y~~~~----~~~~w~gY------~~q~vvi~DD~~~~~~~~- 65 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSV----YTRNP----GDKFWDGY------QGQPVVIIDDFGQDNDGY- 65 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcE----EeCCC----ccchhhcc------CCCcEEEEeecCcccccc-
Confidence 4699999999999999998877432211111111 11111 01122111 245799999998876431
Q ss_pred ccCCCCCChHHHHHHHHHHHhcCCcCccccccc--cCCCCCCceeEEecCcc
Q psy5910 123 VVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEK--KNPSQNPQVFNIDTTNI 172 (225)
Q Consensus 123 ~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~--~~~~~~~~~~~i~ttn~ 172 (225)
.......++++++......+..... ...... .++|.|||.
T Consensus 66 --------~~~~~~~l~~l~s~~~~~~~~a~~~~K~~~~~s--~~vi~tsN~ 107 (107)
T PF00910_consen 66 --------NYSDESELIRLISSNPFQPNMADLEDKGTPFNS--KLVIITSNF 107 (107)
T ss_pred --------chHHHHHHHHHHhcCCcccccccHhhCCCccCC--CEEEEcCCC
Confidence 0114677888888766655433322 123333 577777773
No 224
>PRK08116 hypothetical protein; Validated
Probab=98.93 E-value=3.7e-09 Score=85.40 Aligned_cols=124 Identities=20% Similarity=0.321 Sum_probs=72.4
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCccccc---CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcch
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEA---GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEI 114 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi 114 (225)
.+++|+|++|||||+||.++++.+ +.+++.++..++... .|.+.. ......+++. .....+|+|||+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~-~~~~~~~~~~------l~~~dlLviDDl 187 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSG-KEDENEIIRS------LVNADLLILDDL 187 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccc-cccHHHHHHH------hcCCCEEEEecc
Confidence 469999999999999999999987 677777776554320 111110 0001111111 134569999998
Q ss_pred hhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCcccc----HHHHHHhh
Q psy5910 115 DKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSG----IENFIINR 190 (225)
Q Consensus 115 d~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~----l~~al~~R 190 (225)
..-... +..+..|+.+++.... .. ..+|.|||.. +++ +++.+.+|
T Consensus 188 g~e~~t-----------~~~~~~l~~iin~r~~------------~~--~~~IiTsN~~------~~eL~~~~~~ri~sR 236 (268)
T PRK08116 188 GAERDT-----------EWAREKVYNIIDSRYR------------KG--LPTIVTTNLS------LEELKNQYGKRIYDR 236 (268)
T ss_pred cCCCCC-----------HHHHHHHHHHHHHHHH------------CC--CCEEEECCCC------HHHHHHHHhHHHHHH
Confidence 642211 2257788888885321 11 4567777762 223 45677777
Q ss_pred ccc---ccccccccc
Q psy5910 191 INQ---ETNFLEKLN 202 (225)
Q Consensus 191 f~~---~i~~~~~~~ 202 (225)
+-. .|.++-++-
T Consensus 237 l~e~~~~v~~~g~d~ 251 (268)
T PRK08116 237 ILEMCTPVENEGKSY 251 (268)
T ss_pred HHHcCEEEEeeCcCh
Confidence 522 255555553
No 225
>KOG2035|consensus
Probab=98.91 E-value=7.5e-09 Score=81.85 Aligned_cols=125 Identities=18% Similarity=0.268 Sum_probs=76.0
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHh-CC--Ce--------------------------EEeccCcccccCccCC-cHHHHH
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKII-NV--PI--------------------------IVVDATSFTEAGYVGD-DVESII 90 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~-~~--~~--------------------------~~~~~~~~~~~~~~g~-~~~~~~ 90 (225)
+|+++|||+|+||-|.+.++-+++ |. +- +.+++++ .|+... -+...+
T Consensus 35 PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSD---aG~~DRvViQell 111 (351)
T KOG2035|consen 35 PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSD---AGNYDRVVIQELL 111 (351)
T ss_pred CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhh---cCcccHHHHHHHH
Confidence 699999999999999999888877 21 11 1111111 122211 112233
Q ss_pred HHHHHhcchhhh-hhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEec
Q psy5910 91 QKLLHECDYDVE-LAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDT 169 (225)
Q Consensus 91 ~~~~~~~~~~~~-~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~t 169 (225)
..+.+...-... +..-.|++|.|+|++..+ +|.+|.+-||.+... ..+|..
T Consensus 112 KevAQt~qie~~~qr~fKvvvi~ead~LT~d-------------AQ~aLRRTMEkYs~~---------------~RlIl~ 163 (351)
T KOG2035|consen 112 KEVAQTQQIETQGQRPFKVVVINEADELTRD-------------AQHALRRTMEKYSSN---------------CRLILV 163 (351)
T ss_pred HHHHhhcchhhccccceEEEEEechHhhhHH-------------HHHHHHHHHHHHhcC---------------ceEEEE
Confidence 333222211111 123469999999999977 899999999975322 333333
Q ss_pred CcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 170 TNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 170 tn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
.|. .+.+=+++++|. ..|..|.|+.+.
T Consensus 164 cns-------~SriIepIrSRC-l~iRvpaps~ee 190 (351)
T KOG2035|consen 164 CNS-------TSRIIEPIRSRC-LFIRVPAPSDEE 190 (351)
T ss_pred ecC-------cccchhHHhhhe-eEEeCCCCCHHH
Confidence 333 557889999983 337777777765
No 226
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.90 E-value=5.4e-09 Score=90.40 Aligned_cols=87 Identities=22% Similarity=0.426 Sum_probs=63.8
Q ss_pred eCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccCccCCcHHHHHHHHHHh-----------cchhhhhh
Q psy5910 39 EKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAGYVGDDVESIIQKLLHE-----------CDYDVELA 104 (225)
Q Consensus 39 ~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----------~~~~~~~~ 104 (225)
...+++++|++||||+++|++++... +.+|+.++|..+... ..-..+|.. ..+.+...
T Consensus 161 ~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~--------~~~~~lfg~~~~~~~~~~~~~~g~~~~a 232 (441)
T PRK10365 161 SEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNES--------LLESELFGHEKGAFTGADKRREGRFVEA 232 (441)
T ss_pred CCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHH--------HHHHHhcCCCCCCcCCCCcCCCCceeEC
Confidence 34578999999999999999998776 478999999876321 111111111 11233456
Q ss_pred CCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCC
Q psy5910 105 EQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVN 146 (225)
Q Consensus 105 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~ 146 (225)
.++++||||++.+.+. .|..|+..++...
T Consensus 233 ~~gtl~ldei~~l~~~-------------~q~~l~~~l~~~~ 261 (441)
T PRK10365 233 DGGTLFLDEIGDISPM-------------MQVRLLRAIQERE 261 (441)
T ss_pred CCCEEEEeccccCCHH-------------HHHHHHHHHccCc
Confidence 7899999999999988 8999999998643
No 227
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.89 E-value=4.2e-09 Score=91.00 Aligned_cols=128 Identities=17% Similarity=0.304 Sum_probs=75.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHh-----CCCeEEeccCcccccCccCCcHH---HHHHHHHHhcchhhhhhCCCEEEEc
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKII-----NVPIIVVDATSFTEAGYVGDDVE---SIIQKLLHECDYDVELAEQSIIYID 112 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~-----~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~vl~iD 112 (225)
.+++|+|++|||||+|++++++.+ +..++++++.++.. .+... .. ..+..... ......+|+||
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~-~~~~~-l~~~~~~~~~~~~------~~~~~dvLiID 213 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFAR-KAVDI-LQKTHKEIEQFKN------EICQNDVLIID 213 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH-HHHHH-HHHhhhHHHHHHH------HhccCCEEEEe
Confidence 468899999999999999999865 35677777765532 11100 00 01111111 11355699999
Q ss_pred chhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcc
Q psy5910 113 EIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRIN 192 (225)
Q Consensus 113 Eid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~ 192 (225)
|++.+..+ +..+..|..+++..... . -.+|.|+|..- .....+++.+.+||.
T Consensus 214 Diq~l~~k-----------~~~~e~lf~l~N~~~~~------------~--k~iIltsd~~P---~~l~~l~~rL~SR~~ 265 (450)
T PRK14087 214 DVQFLSYK-----------EKTNEIFFTIFNNFIEN------------D--KQLFFSSDKSP---ELLNGFDNRLITRFN 265 (450)
T ss_pred ccccccCC-----------HHHHHHHHHHHHHHHHc------------C--CcEEEECCCCH---HHHhhccHHHHHHHh
Confidence 99988744 12566777777642210 1 23344444310 011346788999996
Q ss_pred cc--cccccccccc
Q psy5910 193 QE--TNFLEKLNNN 204 (225)
Q Consensus 193 ~~--i~~~~~~~~~ 204 (225)
-- +.+..|+.+.
T Consensus 266 ~Gl~~~L~~pd~e~ 279 (450)
T PRK14087 266 MGLSIAIQKLDNKT 279 (450)
T ss_pred CCceeccCCcCHHH
Confidence 43 7777777765
No 228
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.88 E-value=9.8e-09 Score=73.76 Aligned_cols=88 Identities=23% Similarity=0.411 Sum_probs=49.9
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHh--------CCCeEEeccCccccc-----------Ccc---CCcHHHHHHHHHHhc
Q psy5910 40 KSNILLVGPTGCGKTLMVKTLAKII--------NVPIIVVDATSFTEA-----------GYV---GDDVESIIQKLLHEC 97 (225)
Q Consensus 40 ~~~vLl~Gp~GtGKT~la~~ia~~~--------~~~~~~~~~~~~~~~-----------~~~---g~~~~~~~~~~~~~~ 97 (225)
.+.++++||||+|||++++.+++.+ ..+++.+++...... +.. +.+.......+.+.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~- 82 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA- 82 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH-
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH-
Confidence 3467799999999999999999887 566777766443210 000 11122222222111
Q ss_pred chhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHh
Q psy5910 98 DYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIE 143 (225)
Q Consensus 98 ~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~ 143 (225)
+......+|+|||+|.+. + ....+.|..+++
T Consensus 83 ---l~~~~~~~lviDe~~~l~-~-----------~~~l~~l~~l~~ 113 (131)
T PF13401_consen 83 ---LDRRRVVLLVIDEADHLF-S-----------DEFLEFLRSLLN 113 (131)
T ss_dssp ---HHHCTEEEEEEETTHHHH-T-----------HHHHHHHHHHTC
T ss_pred ---HHhcCCeEEEEeChHhcC-C-----------HHHHHHHHHHHh
Confidence 122233599999999984 2 126677766666
No 229
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.87 E-value=6.8e-08 Score=75.72 Aligned_cols=45 Identities=29% Similarity=0.674 Sum_probs=39.6
Q ss_pred eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
.+...|....+++++++....+.++ +.||||||||||.+.||...
T Consensus 8 ~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 8 GVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred eeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4566677788899999999999888 99999999999999999766
No 230
>PRK06620 hypothetical protein; Validated
Probab=98.86 E-value=9.3e-09 Score=80.38 Aligned_cols=26 Identities=31% Similarity=0.569 Sum_probs=23.1
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhCC
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKIINV 66 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~~~ 66 (225)
+.++|+||||||||+|++++++..+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~ 70 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA 70 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC
Confidence 56889999999999999999987654
No 231
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.86 E-value=3.1e-09 Score=83.38 Aligned_cols=125 Identities=20% Similarity=0.319 Sum_probs=71.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh-----CCCeEEeccCccccc---CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcc
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKII-----NVPIIVVDATSFTEA---GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDE 113 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~-----~~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDE 113 (225)
+++|+||+|+|||.|.+++++.. +..++++++..+... ........ .+.. .-..-.+++||+
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~----~~~~------~~~~~DlL~iDD 105 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIE----EFKD------RLRSADLLIIDD 105 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHH----HHHH------HHCTSSEEEEET
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccch----hhhh------hhhcCCEEEEec
Confidence 57899999999999999999875 556778877665321 00001111 1111 123567999999
Q ss_pred hhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhccc
Q psy5910 114 IDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQ 193 (225)
Q Consensus 114 id~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~ 193 (225)
++.+..+ ...+..|+.+++..... . ..+|.|++..- .....+++.+.+||.-
T Consensus 106 i~~l~~~-----------~~~q~~lf~l~n~~~~~------------~--k~li~ts~~~P---~~l~~~~~~L~SRl~~ 157 (219)
T PF00308_consen 106 IQFLAGK-----------QRTQEELFHLFNRLIES------------G--KQLILTSDRPP---SELSGLLPDLRSRLSW 157 (219)
T ss_dssp GGGGTTH-----------HHHHHHHHHHHHHHHHT------------T--SEEEEEESS-T---TTTTTS-HHHHHHHHC
T ss_pred chhhcCc-----------hHHHHHHHHHHHHHHhh------------C--CeEEEEeCCCC---ccccccChhhhhhHhh
Confidence 9998755 23678888888753211 1 22333333310 1123578889999866
Q ss_pred c--cccccccccc
Q psy5910 194 E--TNFLEKLNNN 204 (225)
Q Consensus 194 ~--i~~~~~~~~~ 204 (225)
- +....|+.+.
T Consensus 158 Gl~~~l~~pd~~~ 170 (219)
T PF00308_consen 158 GLVVELQPPDDED 170 (219)
T ss_dssp SEEEEE----HHH
T ss_pred cchhhcCCCCHHH
Confidence 4 6666666554
No 232
>KOG0477|consensus
Probab=98.85 E-value=5.4e-10 Score=96.64 Aligned_cols=169 Identities=17% Similarity=0.234 Sum_probs=99.2
Q ss_pred ceeechhhHHhhheeeeEecccceEeecc--cceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCcc
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKS--KNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYV 82 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~--~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~ 82 (225)
-.|+|...+|..+.-++ +++.....+ ..+ ...-+|||.|.||||||.+.+.+++.....++.---+... .|..
T Consensus 449 PsIyGh~~VK~AvAlaL---fGGv~kn~~~khkv-RGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASa-vGLT 523 (854)
T KOG0477|consen 449 PSIYGHEDVKRAVALAL---FGGVPKNPGGKHKV-RGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASA-VGLT 523 (854)
T ss_pred chhhchHHHHHHHHHHH---hcCCccCCCCCcee-ccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCccc-ccee
Confidence 35789999998886655 222211111 111 2234899999999999999999999876654443221110 1111
Q ss_pred CCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCC
Q psy5910 83 GDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNP 162 (225)
Q Consensus 83 g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~ 162 (225)
..-....+..-|....|.+-.+..+|-+|||+|+|..+. ...+.++|++...++...+.......+
T Consensus 524 a~v~KdPvtrEWTLEaGALVLADkGvClIDEFDKMndqD-------------RtSIHEAMEQQSISISKAGIVtsLqAr- 589 (854)
T KOG0477|consen 524 AYVRKDPVTREWTLEAGALVLADKGVCLIDEFDKMNDQD-------------RTSIHEAMEQQSISISKAGIVTSLQAR- 589 (854)
T ss_pred EEEeeCCccceeeeccCeEEEccCceEEeehhhhhcccc-------------cchHHHHHHhcchhhhhhhHHHHHHhh-
Confidence 110011112222222234445688999999999998662 456677777766666555444333334
Q ss_pred ceeEEecCcce---e----eccCccccHHHHHHhhcccc
Q psy5910 163 QVFNIDTTNIL---F----IAGGAFSGIENFIINRINQE 194 (225)
Q Consensus 163 ~~~~i~ttn~~---~----i~~~~~~~l~~al~~Rf~~~ 194 (225)
..+|+++|.+ + -+..| -++-+.+++|||..
T Consensus 590 -ctvIAAanPigGRY~~s~tFaqN-V~ltePIlSRFDiL 626 (854)
T KOG0477|consen 590 -CTVIAAANPIGGRYNPSLTFAQN-VDLTEPILSRFDIL 626 (854)
T ss_pred -hhhheecCCCCCccCCccchhhc-cccccchhhhccee
Confidence 6677888773 1 00001 26888999999875
No 233
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.84 E-value=5.6e-09 Score=82.94 Aligned_cols=116 Identities=14% Similarity=0.247 Sum_probs=67.9
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCccccc---CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcch
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEA---GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEI 114 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi 114 (225)
.+++|+|+||||||+|+.++++.+ +..++.++..++... .|... ......++.. .....+|+|||+
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~--~~~~~~~l~~------l~~~dlLvIDDi 171 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNS--ETSEEQLLND------LSNVDLLVIDEI 171 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhc--cccHHHHHHH------hccCCEEEEeCC
Confidence 478999999999999999999988 667777766555320 01000 0001111111 135679999999
Q ss_pred hhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhc
Q psy5910 115 DKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRI 191 (225)
Q Consensus 115 d~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf 191 (225)
+..... +-....|.++++.... .. .-+|.|||...--. .+.+++.+.+|+
T Consensus 172 g~~~~s-----------~~~~~~l~~Ii~~Ry~------------~~--~~tiitSNl~~~~l--~~~~g~ri~sRl 221 (244)
T PRK07952 172 GVQTES-----------RYEKVIINQIVDRRSS------------SK--RPTGMLTNSNMEEM--TKLLGERVMDRM 221 (244)
T ss_pred CCCCCC-----------HHHHHHHHHHHHHHHh------------CC--CCEEEeCCCCHHHH--HHHhChHHHHHH
Confidence 886532 1134567778875321 01 45677888722000 123456667777
No 234
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.84 E-value=4.3e-09 Score=74.24 Aligned_cols=54 Identities=28% Similarity=0.445 Sum_probs=43.7
Q ss_pred CcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 3 LDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 3 l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
|.+.++||+-|++.+..++..++... ..+++-|| |+||||||||.+++.||+.+
T Consensus 23 L~~~l~GQhla~~~v~~ai~~~l~~~--------~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 23 LQRNLFGQHLAVEVVVNAIKGHLANP--------NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHHHccCcHHHHHHHHHHHHHHHcCC--------CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 67889999999999999986665432 13334555 99999999999999999986
No 235
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.83 E-value=1.6e-08 Score=81.96 Aligned_cols=155 Identities=18% Similarity=0.276 Sum_probs=100.6
Q ss_pred ceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhCC-CeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhh
Q psy5910 27 RLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIINV-PIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELA 104 (225)
Q Consensus 27 ~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 104 (225)
..+.+++.++....+.+| |+|+||||||+++++|...+.. +.....+..+ |.|.+..........+ ++..
T Consensus 17 ~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~----f~g~~l~~l~~~~~~~----iRG~ 88 (316)
T COG0444 17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEIL----FDGKDLLSLSEKELRK----IRGK 88 (316)
T ss_pred cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEE----ECCcccccCCHHHHHh----hcCc
Confidence 467889999999999999 9999999999999999999873 3444444222 4554422222221111 1223
Q ss_pred CCCEEEEcchhhhcccccccC--------CCCC-ChHHHHHHHHHHHhcCCcCccccccccCCCCCCce--------eEE
Q psy5910 105 EQSIIYIDEIDKISKKTDVVS--------GKDV-SGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV--------FNI 167 (225)
Q Consensus 105 ~~~vl~iDEid~l~~~~~~~~--------~~~~-~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~--------~~i 167 (225)
.-+.||-|...++.|-..... +... ..+++.+...++|+......+......||++-.+- +.+
T Consensus 89 ~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmal 168 (316)
T COG0444 89 EIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMAL 168 (316)
T ss_pred eEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHH
Confidence 457888888888877654332 2333 34556778888898877777777778888876322 224
Q ss_pred ecCcceeeccCccccHHHHHHh
Q psy5910 168 DTTNILFIAGGAFSGIENFIIN 189 (225)
Q Consensus 168 ~ttn~~~i~~~~~~~l~~al~~ 189 (225)
+..-.+.|++.-...||..+..
T Consensus 169 a~~P~LlIADEPTTALDvt~Qa 190 (316)
T COG0444 169 ALNPKLLIADEPTTALDVTVQA 190 (316)
T ss_pred hCCCCEEEeCCCcchhhHHHHH
Confidence 4444556777655566665444
No 236
>KOG0990|consensus
Probab=98.82 E-value=2.3e-09 Score=86.25 Aligned_cols=114 Identities=21% Similarity=0.249 Sum_probs=72.1
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhCCC------eEEeccCcccccCccCCcHHHHHHHHHHhcch--hhh-hhCCCEEEE
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKIINVP------IIVVDATSFTEAGYVGDDVESIIQKLLHECDY--DVE-LAEQSIIYI 111 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~-~~~~~vl~i 111 (225)
++.|+|||||||||+...+.|+.+-.+ +..++.++- .|-++-..--..|..... ... ......+++
T Consensus 63 Ph~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~-----rgid~vr~qi~~fast~~~~~fst~~~fKlvIL 137 (360)
T KOG0990|consen 63 PHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDD-----RGIDPVRQQIHLFASTQQPTTYSTHAAFKLVIL 137 (360)
T ss_pred CcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCc-----cCCcchHHHHHHHHhhccceeccccCceeEEEe
Confidence 499999999999999999999887543 112233221 222222222223332210 001 125679999
Q ss_pred cchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhc
Q psy5910 112 DEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRI 191 (225)
Q Consensus 112 DEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf 191 (225)
||+|.+... +|++|.+.++..+.. ++++..+|. +..+.+++++||
T Consensus 138 DEADaMT~~-------------AQnALRRviek~t~n---------------~rF~ii~n~-------~~ki~pa~qsRc 182 (360)
T KOG0990|consen 138 DEADAMTRD-------------AQNALRRVIEKYTAN---------------TRFATISNP-------PQKIHPAQQSRC 182 (360)
T ss_pred cchhHhhHH-------------HHHHHHHHHHHhccc---------------eEEEEeccC-------hhhcCchhhccc
Confidence 999999977 899999988865422 444444455 568899999976
Q ss_pred ccc
Q psy5910 192 NQE 194 (225)
Q Consensus 192 ~~~ 194 (225)
-+.
T Consensus 183 trf 185 (360)
T KOG0990|consen 183 TRF 185 (360)
T ss_pred ccC
Confidence 443
No 237
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=2.1e-08 Score=88.11 Aligned_cols=137 Identities=28% Similarity=0.444 Sum_probs=102.1
Q ss_pred eeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhh
Q psy5910 38 LEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKI 117 (225)
Q Consensus 38 ~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l 117 (225)
.+..+++++||||||||+++++++.. +..+..+++..... +|.|.. .......+..+ ....++++++||++.+
T Consensus 16 ~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~a----~~~~~~ii~~d~~~~~ 88 (494)
T COG0464 16 EPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILS-KYVGES-ELRLRELFEEA----EKLAPSIIFIDEIDAL 88 (494)
T ss_pred CCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhh-hhhhHH-HHHHHHHHHHH----HHhCCCeEeechhhhc
Confidence 34568999999999999999999998 55556666665553 566665 44556666655 4456799999999999
Q ss_pred cccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHh--hccccc
Q psy5910 118 SKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIIN--RINQET 195 (225)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i 195 (225)
.+.+.. ........+...++..+++.. ... +.++..+|. +..+++++++ ||++.+
T Consensus 89 ~~~~~~--~~~~~~~~v~~~l~~~~d~~~-------------~~~-v~~~~~~~~-------~~~~~~a~~~~~~~~~~~ 145 (494)
T COG0464 89 APKRSS--DQGEVERRVVAQLLALMDGLK-------------RGQ-VIVIGATNR-------PDGLDPAKRRPGRFDREI 145 (494)
T ss_pred ccCccc--cccchhhHHHHHHHHhccccc-------------CCc-eEEEeecCC-------ccccChhHhCccccceee
Confidence 998766 333445567888888888753 112 566667777 6789999999 999998
Q ss_pred ccccccccc
Q psy5910 196 NFLEKLNNN 204 (225)
Q Consensus 196 ~~~~~~~~~ 204 (225)
....|+...
T Consensus 146 ~~~~~~~~~ 154 (494)
T COG0464 146 EVNLPDEAG 154 (494)
T ss_pred ecCCCCHHH
Confidence 888888754
No 238
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.80 E-value=9.7e-08 Score=74.97 Aligned_cols=58 Identities=28% Similarity=0.507 Sum_probs=44.9
Q ss_pred eeeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhCC--CeEEeccCcc
Q psy5910 19 VGVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIINV--PIIVVDATSF 76 (225)
Q Consensus 19 ~~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~~--~~~~~~~~~~ 76 (225)
+.+...|.....+++.++..+.+.++ |+|||||||||+.+.|-+.... --+.+++.++
T Consensus 5 ~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i 65 (309)
T COG1125 5 ENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDI 65 (309)
T ss_pred eeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeec
Confidence 34566677788889999999998888 9999999999999999887722 2455555444
No 239
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.80 E-value=1.8e-08 Score=80.71 Aligned_cols=117 Identities=21% Similarity=0.321 Sum_probs=71.1
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccCccCCcHHHHHHHHHHhcc---hhhh-hhCCCEEEEc
Q psy5910 40 KSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAGYVGDDVESIIQKLLHECD---YDVE-LAEQSIIYID 112 (225)
Q Consensus 40 ~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~-~~~~~vl~iD 112 (225)
..+++|+||||+|||.||-+|++.+ |.++..++..++... +...+.... .... .....+|+||
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~----------Lk~~~~~~~~~~~l~~~l~~~dlLIiD 174 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSK----------LKAAFDEGRLEEKLLRELKKVDLLIID 174 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH----------HHHHHhcCchHHHHHHHhhcCCEEEEe
Confidence 4589999999999999999999888 677777777665321 111111100 0011 2466799999
Q ss_pred chhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCc---cccHHHHHHh
Q psy5910 113 EIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGA---FSGIENFIIN 189 (225)
Q Consensus 113 Eid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~---~~~l~~al~~ 189 (225)
|+....... ...+.+.+++...... . .. +.|||..+-.+.. .....+++.+
T Consensus 175 DlG~~~~~~-----------~~~~~~~q~I~~r~~~------------~--~~-~~tsN~~~~~~~~~~~~~~~~e~~~d 228 (254)
T COG1484 175 DIGYEPFSQ-----------EEADLLFQLISRRYES------------R--SL-IITSNLSFGEWDELFGDDALTEALLD 228 (254)
T ss_pred cccCccCCH-----------HHHHHHHHHHHHHHhh------------c--cc-eeecCCChHHHHhhccCchhHHHHHH
Confidence 998866441 1345566656532211 1 23 7888887644431 1125788888
Q ss_pred hcc
Q psy5910 190 RIN 192 (225)
Q Consensus 190 Rf~ 192 (225)
|..
T Consensus 229 Ri~ 231 (254)
T COG1484 229 RIL 231 (254)
T ss_pred HHH
Confidence 753
No 240
>KOG0741|consensus
Probab=98.79 E-value=3.6e-08 Score=84.30 Aligned_cols=136 Identities=20% Similarity=0.276 Sum_probs=81.7
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcc
Q psy5910 40 KSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISK 119 (225)
Q Consensus 40 ~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~ 119 (225)
...+||.||||+|||+||-.+|...+.||+.+-...-. .|+.-..--..+...|..+ .+..-+|+++|+++++..
T Consensus 538 lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~m-iG~sEsaKc~~i~k~F~DA----YkS~lsiivvDdiErLiD 612 (744)
T KOG0741|consen 538 LVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDM-IGLSESAKCAHIKKIFEDA----YKSPLSIIVVDDIERLLD 612 (744)
T ss_pred ceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHc-cCccHHHHHHHHHHHHHHh----hcCcceEEEEcchhhhhc
Confidence 35799999999999999999999999999987554322 1232221123455566654 445668999999998852
Q ss_pred cccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHH-HHHhhcccccccc
Q psy5910 120 KTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIEN-FIINRINQETNFL 198 (225)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~-al~~Rf~~~i~~~ 198 (225)
--.. .+.-+.-+.++|+-+|... |.+..+.++++||.. .+-|.+ .+.+.|+-.+..|
T Consensus 613 ~vpI---GPRfSN~vlQaL~VllK~~------------ppkg~kLli~~TTS~-------~~vL~~m~i~~~F~~~i~Vp 670 (744)
T KOG0741|consen 613 YVPI---GPRFSNLVLQALLVLLKKQ------------PPKGRKLLIFGTTSR-------REVLQEMGILDCFSSTIHVP 670 (744)
T ss_pred cccc---CchhhHHHHHHHHHHhccC------------CCCCceEEEEecccH-------HHHHHHcCHHHhhhheeecC
Confidence 1100 0112223667777777642 222212666666654 222222 2445676666666
Q ss_pred cccc
Q psy5910 199 EKLN 202 (225)
Q Consensus 199 ~~~~ 202 (225)
.-..
T Consensus 671 nl~~ 674 (744)
T KOG0741|consen 671 NLTT 674 (744)
T ss_pred ccCc
Confidence 5554
No 241
>KOG1942|consensus
Probab=98.79 E-value=1.3e-08 Score=81.22 Aligned_cols=61 Identities=21% Similarity=0.360 Sum_probs=40.5
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhC--CCeEEeccC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIIN--VPIIVVDAT 74 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~--~~~~~~~~~ 74 (225)
.-++||..+.+..--.+..... -....+.+||.||||||||.+|-+|++++| .||..+.++
T Consensus 38 ~g~vGQ~~AReAagiivdlik~---------KkmaGravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgS 100 (456)
T KOG1942|consen 38 AGFVGQENAREAAGIIVDLIKS---------KKMAGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGS 100 (456)
T ss_pred cccccchhhhhhhhHHHHHHHh---------hhccCcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccch
Confidence 4578998887665332211110 013446899999999999999999999994 455554443
No 242
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.77 E-value=2.4e-08 Score=82.76 Aligned_cols=117 Identities=24% Similarity=0.311 Sum_probs=68.9
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCccccc----CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcc
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEA----GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDE 113 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDE 113 (225)
.+++|+||+|||||+||.++|+.+ +..+++++..++... .+.... . ....+. ....--+|+||+
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~-~--~~~~~~------~l~~~DLLIIDD 254 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDK-E--LEEVYD------LLINCDLLIIDD 254 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccch-h--HHHHHH------HhccCCEEEEec
Confidence 689999999999999999999987 666777777655321 000000 0 000011 112457999999
Q ss_pred hhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhccc
Q psy5910 114 IDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQ 193 (225)
Q Consensus 114 id~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~ 193 (225)
+...... ...+..|+.+++..... . .-+|.|||...-.. .+.+++.+.+|+..
T Consensus 255 lG~e~~t-----------~~~~~~Lf~iin~R~~~------------~--k~tIiTSNl~~~el--~~~~~eri~SRL~~ 307 (329)
T PRK06835 255 LGTEKIT-----------EFSKSELFNLINKRLLR------------Q--KKMIISTNLSLEEL--LKTYSERISSRLLG 307 (329)
T ss_pred cCCCCCC-----------HHHHHHHHHHHHHHHHC------------C--CCEEEECCCCHHHH--HHHHhHHHHHHHHc
Confidence 9776533 12567788888753210 1 34667777621000 12246678888743
No 243
>KOG0481|consensus
Probab=98.74 E-value=3.9e-09 Score=89.69 Aligned_cols=170 Identities=17% Similarity=0.221 Sum_probs=102.2
Q ss_pred cceeechhhHHhhheeeeEecccceEe--ecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCc
Q psy5910 4 DRHIIGQHETKKIVSVGVYNHYKRLFL--LKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGY 81 (225)
Q Consensus 4 ~~~i~G~~~~~~~l~~~l~~~~~~~~~--~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~ 81 (225)
.-.|+|.++.|+.+.-.+ +++.+. .++..+ ...-+|||.|.|||.||.|.+-+-+.....++.--.+.. .+|.
T Consensus 330 APSIfG~~DiKkAiaClL---FgGsrK~LpDg~~l-RGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGSS-AAGL 404 (729)
T KOG0481|consen 330 APSIFGHEDIKKAIACLL---FGGSRKRLPDGVTL-RGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGSS-AAGL 404 (729)
T ss_pred CchhcCchhHHHHHHHHh---hcCccccCCCccee-ccceeEEEecCCchhHHHHHHHHHhcCceEEEecCCCcc-cccc
Confidence 345789999998886544 333322 222222 223489999999999999999998876554443222111 1121
Q ss_pred cCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCC
Q psy5910 82 VGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQN 161 (225)
Q Consensus 82 ~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~ 161 (225)
...-.......-|-...+.+-.+.++|+.|||+|+|... -.-++.++||....++...+-......+
T Consensus 405 TASV~RD~~tReFylEGGAMVLADgGVvCIDEFDKMre~-------------DRVAIHEAMEQQTISIAKAGITT~LNSR 471 (729)
T KOG0481|consen 405 TASVIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMRED-------------DRVAIHEAMEQQTISIAKAGITTTLNSR 471 (729)
T ss_pred eeeEEecCCcceEEEecceEEEecCCEEEeehhhccCch-------------hhhHHHHHHHhhhHHHhhhcceeeecch
Confidence 111000001111111123334568999999999999866 2457777888766666555544433344
Q ss_pred CceeEEecCcceeeccC-------ccccHHHHHHhhcccc
Q psy5910 162 PQVFNIDTTNILFIAGG-------AFSGIENFIINRINQE 194 (225)
Q Consensus 162 ~~~~~i~ttn~~~i~~~-------~~~~l~~al~~Rf~~~ 194 (225)
.-++++.|.+|--+. |. +.-+.+++|||..
T Consensus 472 --tSVLAAANpvfGRyDd~Kt~~dNI-Df~~TILSRFDmI 508 (729)
T KOG0481|consen 472 --TSVLAAANPVFGRYDDTKTGEDNI-DFMPTILSRFDMI 508 (729)
T ss_pred --hhhhhhcCCccccccccCCccccc-chhhhHhhhccEE
Confidence 677788888774332 22 4668899999987
No 244
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.74 E-value=1.3e-08 Score=81.40 Aligned_cols=87 Identities=24% Similarity=0.480 Sum_probs=62.9
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHH------hCCCeEEeccCcccccCccCCcH-HHHH---HHHH----HhcchhhhhhC
Q psy5910 40 KSNILLVGPTGCGKTLMVKTLAKI------INVPIIVVDATSFTEAGYVGDDV-ESII---QKLL----HECDYDVELAE 105 (225)
Q Consensus 40 ~~~vLl~Gp~GtGKT~la~~ia~~------~~~~~~~~~~~~~~~~~~~g~~~-~~~~---~~~~----~~~~~~~~~~~ 105 (225)
..++||.||+|.|||.||+.|.+. +..+|+.+||..+.. +.. +..+ ...| ..-.+.++...
T Consensus 208 r~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrg-----d~amsalfghvkgaftga~~~r~gllrsad 282 (531)
T COG4650 208 RAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRG-----DTAMSALFGHVKGAFTGARESREGLLRSAD 282 (531)
T ss_pred cCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecC-----chHHHHHHhhhccccccchhhhhhhhccCC
Confidence 458999999999999999988753 367899999988743 211 1111 1111 11124566779
Q ss_pred CCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhc
Q psy5910 106 QSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEG 144 (225)
Q Consensus 106 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~ 144 (225)
++++|+|||..+... -|..|++.+++
T Consensus 283 ggmlfldeigelgad-------------eqamllkaiee 308 (531)
T COG4650 283 GGMLFLDEIGELGAD-------------EQAMLLKAIEE 308 (531)
T ss_pred CceEehHhhhhcCcc-------------HHHHHHHHHHh
Confidence 999999999999977 47889999985
No 245
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.73 E-value=2e-08 Score=89.47 Aligned_cols=56 Identities=20% Similarity=0.386 Sum_probs=39.8
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCc-EEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSN-ILLVGPTGCGKTLMVKTLAKIINVPIIV 70 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-vLl~Gp~GtGKT~la~~ia~~~~~~~~~ 70 (225)
+.++|+++.++.|..++.... +....+. ++|+||||||||++++.+|+.++..+..
T Consensus 84 del~~~~~ki~~l~~~l~~~~----------~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~E 140 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQV----------LENAPKRILLITGPSGCGKSTTIKILSKELGIQVQE 140 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcc----------cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHH
Confidence 346899988888877663221 1112233 6699999999999999999998765433
No 246
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.72 E-value=8.5e-08 Score=73.41 Aligned_cols=45 Identities=29% Similarity=0.597 Sum_probs=39.3
Q ss_pred eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
.+..+|+..++++++++..+.+.|- |+|||||||||+.|++-+..
T Consensus 12 ~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmn 57 (253)
T COG1117 12 DLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMN 57 (253)
T ss_pred ceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhc
Confidence 4567778888889999999998888 99999999999999998765
No 247
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.72 E-value=6.2e-08 Score=78.52 Aligned_cols=122 Identities=17% Similarity=0.146 Sum_probs=71.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEecc--------Ccc---cccCcc-CCcHHHHHHHHHHhcchhhhhhCCCEE
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDA--------TSF---TEAGYV-GDDVESIIQKLLHECDYDVELAEQSII 109 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~--------~~~---~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~vl 109 (225)
.+||+||+|+||+++|..+|+.+-+.-..-.| .++ ...+.. .-.+. .++.+.+...........-|+
T Consensus 21 AyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~id-qiR~l~~~~~~~p~e~~~kv~ 99 (290)
T PRK05917 21 AIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIE-TPRAIKKQIWIHPYESPYKIY 99 (290)
T ss_pred eEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHH-HHHHHHHHHhhCccCCCceEE
Confidence 56799999999999999999988542100001 111 000000 01112 233333332111122355799
Q ss_pred EEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHh
Q psy5910 110 YIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIIN 189 (225)
Q Consensus 110 ~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~ 189 (225)
+||++|++... ++++|++.||+ |..+ .++++.|+| ++.+.+.+++
T Consensus 100 ii~~ad~mt~~-------------AaNaLLK~LEE-------------Pp~~-~~fiL~~~~--------~~~ll~TI~S 144 (290)
T PRK05917 100 IIHEADRMTLD-------------AISAFLKVLED-------------PPQH-GVIILTSAK--------PQRLPPTIRS 144 (290)
T ss_pred EEechhhcCHH-------------HHHHHHHHhhc-------------CCCC-eEEEEEeCC--------hhhCcHHHHh
Confidence 99999999987 89999999997 2233 133333333 4689999999
Q ss_pred hcccccccccc
Q psy5910 190 RINQETNFLEK 200 (225)
Q Consensus 190 Rf~~~i~~~~~ 200 (225)
|+.. +.|+.+
T Consensus 145 Rcq~-~~~~~~ 154 (290)
T PRK05917 145 RSLS-IHIPME 154 (290)
T ss_pred cceE-EEccch
Confidence 8533 445443
No 248
>PF13173 AAA_14: AAA domain
Probab=98.71 E-value=7.6e-08 Score=69.14 Aligned_cols=70 Identities=29% Similarity=0.425 Sum_probs=45.9
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhC--CCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhc
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKIIN--VPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKIS 118 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~ 118 (225)
+.++|+||.||||||+++.+++.+. ..++++++.+....... . .. +...+.+. ......++||||++.+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~--~-~~-~~~~~~~~----~~~~~~~i~iDEiq~~~ 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLA--D-PD-LLEYFLEL----IKPGKKYIFIDEIQYLP 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHh--h-hh-hHHHHHHh----hccCCcEEEEehhhhhc
Confidence 4567999999999999999998875 67888887665321100 0 00 11111111 11267899999999985
No 249
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.70 E-value=4.2e-08 Score=75.18 Aligned_cols=46 Identities=22% Similarity=0.498 Sum_probs=40.3
Q ss_pred eeeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 19 VGVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 19 ~~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
+.+..+|+....++++++...++.++ ++|||||||||+.|++...-
T Consensus 6 ~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 6 KNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred EeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCc
Confidence 35677888899999999999999888 99999999999999998543
No 250
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.66 E-value=1.9e-07 Score=75.45 Aligned_cols=25 Identities=36% Similarity=0.667 Sum_probs=22.2
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~~ 65 (225)
+.++++||+|+|||++++.+++.+.
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 3577999999999999999999875
No 251
>PRK06921 hypothetical protein; Provisional
Probab=98.66 E-value=1.3e-07 Score=76.31 Aligned_cols=36 Identities=31% Similarity=0.539 Sum_probs=28.3
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHh----CCCeEEeccCc
Q psy5910 40 KSNILLVGPTGCGKTLMVKTLAKII----NVPIIVVDATS 75 (225)
Q Consensus 40 ~~~vLl~Gp~GtGKT~la~~ia~~~----~~~~~~~~~~~ 75 (225)
..+++|+||||||||+|+.+|++.+ +..+++++..+
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~ 156 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVE 156 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHH
Confidence 3579999999999999999999876 34555555433
No 252
>PRK09087 hypothetical protein; Validated
Probab=98.64 E-value=7.1e-08 Score=76.07 Aligned_cols=111 Identities=15% Similarity=0.216 Sum_probs=62.1
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhccc
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKK 120 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~ 120 (225)
+.++|+||+|||||+|++++++..+.. +++...+. ...+.. ....+++||+++.+...
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~-------------~~~~~~-------~~~~~l~iDDi~~~~~~ 102 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIG-------------SDAANA-------AAEGPVLIEDIDAGGFD 102 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcc-------------hHHHHh-------hhcCeEEEECCCCCCCC
Confidence 458899999999999999999875443 33332211 111111 12358999999976422
Q ss_pred ccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccc--cccc
Q psy5910 121 TDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQE--TNFL 198 (225)
Q Consensus 121 ~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~--i~~~ 198 (225)
+..|+.++..... ... .+++.++..+ .......+.+++||.-- +.+.
T Consensus 103 --------------~~~lf~l~n~~~~-----------~g~--~ilits~~~p----~~~~~~~~dL~SRl~~gl~~~l~ 151 (226)
T PRK09087 103 --------------ETGLFHLINSVRQ-----------AGT--SLLMTSRLWP----SSWNVKLPDLKSRLKAATVVEIG 151 (226)
T ss_pred --------------HHHHHHHHHHHHh-----------CCC--eEEEECCCCh----HHhccccccHHHHHhCCceeecC
Confidence 3445555543210 001 3333333220 00123467789998643 7777
Q ss_pred cccccc
Q psy5910 199 EKLNNN 204 (225)
Q Consensus 199 ~~~~~~ 204 (225)
.|+.+.
T Consensus 152 ~pd~e~ 157 (226)
T PRK09087 152 EPDDAL 157 (226)
T ss_pred CCCHHH
Confidence 777655
No 253
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.63 E-value=2.7e-07 Score=71.98 Aligned_cols=35 Identities=29% Similarity=0.551 Sum_probs=32.1
Q ss_pred eecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 30 LLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 30 ~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
.+++.++....+.++ |+||||||||||+|+++...
T Consensus 22 ~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 22 ALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred hhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 778889999999999 99999999999999999765
No 254
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.60 E-value=1.5e-07 Score=77.38 Aligned_cols=69 Identities=17% Similarity=0.369 Sum_probs=44.9
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCccccc---CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcc
Q psy5910 40 KSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEA---GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDE 113 (225)
Q Consensus 40 ~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDE 113 (225)
..+++|+||+|||||.|+.++|+.+ +.++..+....+... .+...... ..++. .....+|+|||
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~----~~l~~------l~~~dlLiIDD 225 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVK----EKIDA------VKEAPVLMLDD 225 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHH----HHHHH------hcCCCEEEEec
Confidence 3589999999999999999999988 666666666544210 01101111 11111 23667999999
Q ss_pred hhhhc
Q psy5910 114 IDKIS 118 (225)
Q Consensus 114 id~l~ 118 (225)
+..-.
T Consensus 226 iG~e~ 230 (306)
T PRK08939 226 IGAEQ 230 (306)
T ss_pred CCCcc
Confidence 97654
No 255
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.58 E-value=5.2e-07 Score=71.68 Aligned_cols=103 Identities=18% Similarity=0.335 Sum_probs=64.6
Q ss_pred eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhCCC--eEEeccCcccccCccCCcHHHHHHHHHHhc-------
Q psy5910 28 LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIINVP--IIVVDATSFTEAGYVGDDVESIIQKLLHEC------- 97 (225)
Q Consensus 28 ~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------- 97 (225)
.+++++.++....+.++ |+|+|||||||++|.+.+..... -+.+++.++.. +........+..++...
T Consensus 26 v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~--~~~~~~~~~v~elL~~Vgl~~~~~ 103 (268)
T COG4608 26 VKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITK--LSKEERRERVLELLEKVGLPEEFL 103 (268)
T ss_pred eEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhh--cchhHHHHHHHHHHHHhCCCHHHh
Confidence 57788999999999999 99999999999999999877432 23344433321 11111112222222221
Q ss_pred -------------chhhh---hhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhc
Q psy5910 98 -------------DYDVE---LAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEG 144 (225)
Q Consensus 98 -------------~~~~~---~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~ 144 (225)
+..++ ...|.+++.||.-++.... +|...+.+|..
T Consensus 104 ~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvS------------iqaqIlnLL~d 154 (268)
T COG4608 104 YRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVS------------VQAQILNLLKD 154 (268)
T ss_pred hcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchh------------HHHHHHHHHHH
Confidence 00111 3489999999988877542 66666666653
No 256
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.58 E-value=9.7e-08 Score=75.34 Aligned_cols=66 Identities=23% Similarity=0.413 Sum_probs=47.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhccc
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKK 120 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~ 120 (225)
+-.++||+|||||+..+.+|+.+|.+++.++|.+..+ ...+.+++.-. ...++-+.|||++++...
T Consensus 34 ~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~--------~~~l~ril~G~-----~~~GaW~cfdefnrl~~~ 99 (231)
T PF12774_consen 34 GGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD--------YQSLSRILKGL-----AQSGAWLCFDEFNRLSEE 99 (231)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS---------HHHHHHHHHHH-----HHHT-EEEEETCCCSSHH
T ss_pred CCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc--------HHHHHHHHHHH-----hhcCchhhhhhhhhhhHH
Confidence 4558999999999999999999999999999987643 22233333221 235899999999999865
No 257
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.57 E-value=1.8e-07 Score=75.72 Aligned_cols=105 Identities=19% Similarity=0.261 Sum_probs=59.1
Q ss_pred cceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhC---------CCeEEeccC
Q psy5910 4 DRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIIN---------VPIIVVDAT 74 (225)
Q Consensus 4 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~---------~~~~~~~~~ 74 (225)
.++++|...+.+.+...- ..+..++. ...+++||+|+||.|||++++...+... .|++.+...
T Consensus 33 ~~rWIgY~~A~~~L~~L~-~Ll~~P~~-------~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P 104 (302)
T PF05621_consen 33 ADRWIGYPRAKEALDRLE-ELLEYPKR-------HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMP 104 (302)
T ss_pred cCCeecCHHHHHHHHHHH-HHHhCCcc-------cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecC
Confidence 467888887776654421 11122111 2235899999999999999999997652 345555442
Q ss_pred cccc-------------cCccC-CcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhccc
Q psy5910 75 SFTE-------------AGYVG-DDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKK 120 (225)
Q Consensus 75 ~~~~-------------~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~ 120 (225)
.-.+ ..|.. ..... ........++..+.-+++|||++.+...
T Consensus 105 ~~p~~~~~Y~~IL~~lgaP~~~~~~~~~----~~~~~~~llr~~~vrmLIIDE~H~lLaG 160 (302)
T PF05621_consen 105 PEPDERRFYSAILEALGAPYRPRDRVAK----LEQQVLRLLRRLGVRMLIIDEFHNLLAG 160 (302)
T ss_pred CCCChHHHHHHHHHHhCcccCCCCCHHH----HHHHHHHHHHHcCCcEEEeechHHHhcc
Confidence 2111 01111 11111 1111112234567889999999997643
No 258
>KOG0479|consensus
Probab=98.56 E-value=9.7e-08 Score=82.48 Aligned_cols=167 Identities=18% Similarity=0.233 Sum_probs=103.4
Q ss_pred CcceeechhhHHhhheeeeEecccceEe-ecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCc
Q psy5910 3 LDRHIIGQHETKKIVSVGVYNHYKRLFL-LKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGY 81 (225)
Q Consensus 3 l~~~i~G~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~ 81 (225)
|.-.|+|.+.+|+.+.-.+ +++.+. +.+.+--...-++|++|.|-+.||.|.|.+.+.....+-.---+.. .-|.
T Consensus 299 LAPSI~GH~~vKkAillLL---lGGvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSS-GVGL 374 (818)
T KOG0479|consen 299 LAPSIYGHDYVKKAILLLL---LGGVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSS-GVGL 374 (818)
T ss_pred cCcccccHHHHHHHHHHHH---hccceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCC-Cccc
Confidence 4557899999998886544 333322 2222221223489999999999999999998876443221110000 0000
Q ss_pred c------CCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccc
Q psy5910 82 V------GDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEK 155 (225)
Q Consensus 82 ~------g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~ 155 (225)
. .++-+..+. .+.+-.+..+|+.|||+|+|..- =..++.++|++...++...+.-
T Consensus 375 TAAVTtD~eTGERRLE------AGAMVLADRGVVCIDEFDKMsDi-------------DRvAIHEVMEQqtVTIaKAGIH 435 (818)
T KOG0479|consen 375 TAAVTTDQETGERRLE------AGAMVLADRGVVCIDEFDKMSDI-------------DRVAIHEVMEQQTVTIAKAGIH 435 (818)
T ss_pred eeEEeeccccchhhhh------cCceEEccCceEEehhcccccch-------------hHHHHHHHHhcceEEeEeccch
Confidence 0 011111111 12233458899999999999855 2568899999888877666644
Q ss_pred cCCCCCCceeEEecCcceeeccC-c--c---ccHHHHHHhhcccc
Q psy5910 156 KNPSQNPQVFNIDTTNILFIAGG-A--F---SGIENFIINRINQE 194 (225)
Q Consensus 156 ~~~~~~~~~~~i~ttn~~~i~~~-~--~---~~l~~al~~Rf~~~ 194 (225)
.....+ +-++++.|.+|--=. + | =.|++.+++|||..
T Consensus 436 asLNAR--CSVlAAANPvyG~Yd~~k~P~eNIgLpDSLLSRFDLl 478 (818)
T KOG0479|consen 436 ASLNAR--CSVLAAANPVYGQYDQSKTPMENIGLPDSLLSRFDLL 478 (818)
T ss_pred hhhccc--eeeeeecCccccccCCCCChhhccCCcHHHHhhhcEE
Confidence 333444 889999999872211 1 1 25899999999887
No 259
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.52 E-value=8.2e-07 Score=70.65 Aligned_cols=123 Identities=24% Similarity=0.224 Sum_probs=72.6
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCc-----------ccccCcc---C--CcHHHHHHHHHHhcchhh-hh
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATS-----------FTEAGYV---G--DDVESIIQKLLHECDYDV-EL 103 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~-----------~~~~~~~---g--~~~~~~~~~~~~~~~~~~-~~ 103 (225)
..+||+||+|+||..+|.++|+.+-+.--.-.|+. .-+--+. + -. ...++.+.+...... ..
T Consensus 8 HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~-id~ir~l~~~l~~~s~e~ 86 (261)
T PRK05818 8 HPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIK-KEDALSIINKLNRPSVES 86 (261)
T ss_pred cceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCC-HHHHHHHHHHHccCchhc
Confidence 36779999999999999999988733210001110 0000010 0 11 112233333221111 11
Q ss_pred hCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccH
Q psy5910 104 AEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGI 183 (225)
Q Consensus 104 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l 183 (225)
...-|++|+++|++... +.++|++.||+ |..+ .+++.+|+. ++.+
T Consensus 87 ~~~KV~II~~ae~m~~~-------------AaNaLLK~LEE-------------Pp~~--t~fiLit~~-------~~~l 131 (261)
T PRK05818 87 NGKKIYIIYGIEKLNKQ-------------SANSLLKLIEE-------------PPKN--TYGIFTTRN-------ENNI 131 (261)
T ss_pred CCCEEEEeccHhhhCHH-------------HHHHHHHhhcC-------------CCCC--eEEEEEECC-------hHhC
Confidence 24579999999999977 79999999996 2333 444444443 5789
Q ss_pred HHHHHhhcccccccccc
Q psy5910 184 ENFIINRINQETNFLEK 200 (225)
Q Consensus 184 ~~al~~Rf~~~i~~~~~ 200 (225)
.+.+++|... +.|+.+
T Consensus 132 LpTI~SRCq~-~~~~~~ 147 (261)
T PRK05818 132 LNTILSRCVQ-YVVLSK 147 (261)
T ss_pred chHhhhheee-eecCCh
Confidence 9999999633 555555
No 260
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.51 E-value=2.1e-07 Score=75.34 Aligned_cols=142 Identities=18% Similarity=0.245 Sum_probs=64.9
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhCCCe---EEeccCcccccCccCCcHHHHHHHHHHhc----ch---hhhhhCCCEE
Q psy5910 40 KSNILLVGPTGCGKTLMVKTLAKIINVPI---IVVDATSFTEAGYVGDDVESIIQKLLHEC----DY---DVELAEQSII 109 (225)
Q Consensus 40 ~~~vLl~Gp~GtGKT~la~~ia~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----~~---~~~~~~~~vl 109 (225)
..++||+||+|||||++++..-+.+...- ..++++.. +....+..+.+.. .+ .....+..|+
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~--------Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~ 104 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQ--------TTSNQLQKIIESKLEKRRGRVYGPPGGKKLVL 104 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TT--------HHHHHHHHCCCTTECECTTEEEEEESSSEEEE
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCC--------CCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEE
Confidence 45899999999999999988776554332 22333221 1122233322211 01 0112345799
Q ss_pred EEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHh
Q psy5910 110 YIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIIN 189 (225)
Q Consensus 110 ~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~ 189 (225)
|||+++--.++.- ......+.|.++++..+.-......+. .-.+ +.++++.+. .+|. ..+++-+.|
T Consensus 105 fiDDlN~p~~d~y-------gtq~~iElLRQ~i~~~g~yd~~~~~~~-~i~~--i~~vaa~~p---~~Gr-~~is~R~~r 170 (272)
T PF12775_consen 105 FIDDLNMPQPDKY-------GTQPPIELLRQLIDYGGFYDRKKLEWK-SIED--IQFVAAMNP---TGGR-NPISPRFLR 170 (272)
T ss_dssp EEETTT-S---TT-------S--HHHHHHHHHHHCSEEECTTTTEEE-EECS--EEEEEEESS---TTT---SHHHHHHT
T ss_pred EecccCCCCCCCC-------CCcCHHHHHHHHHHhcCcccCCCcEEE-EEee--eEEEEecCC---CCCC-CCCChHHhh
Confidence 9999987665531 112244556666775332111100000 0111 344444443 1121 247787777
Q ss_pred hcccccccccccccc
Q psy5910 190 RINQETNFLEKLNNN 204 (225)
Q Consensus 190 Rf~~~i~~~~~~~~~ 204 (225)
.|. .+.++.|+.+.
T Consensus 171 ~f~-i~~~~~p~~~s 184 (272)
T PF12775_consen 171 HFN-ILNIPYPSDES 184 (272)
T ss_dssp TEE-EEE----TCCH
T ss_pred heE-EEEecCCChHH
Confidence 663 26666676654
No 261
>KOG3347|consensus
Probab=98.50 E-value=6e-07 Score=64.79 Aligned_cols=34 Identities=32% Similarity=0.576 Sum_probs=29.7
Q ss_pred eCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEec
Q psy5910 39 EKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVD 72 (225)
Q Consensus 39 ~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~ 72 (225)
..+++|+.|-|||||||+|..||..++.+++.+.
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 3469999999999999999999999988876654
No 262
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.50 E-value=7.3e-07 Score=85.12 Aligned_cols=144 Identities=26% Similarity=0.298 Sum_probs=104.7
Q ss_pred eCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCccccc-CccC----CcHHHHHHHHHHhcchhhhhhCCCEEEEcc
Q psy5910 39 EKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEA-GYVG----DDVESIIQKLLHECDYDVELAEQSIIYIDE 113 (225)
Q Consensus 39 ~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~-~~~g----~~~~~~~~~~~~~~~~~~~~~~~~vl~iDE 113 (225)
..-++|+.||+-+|||++...+|+..|..|++++-....+. .|.| .+-+. --|++.....+...+--|++||
T Consensus 887 ~~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~---lsFkEGvLVeAlR~GyWIVLDE 963 (4600)
T COG5271 887 SNFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGS---LSFKEGVLVEALRRGYWIVLDE 963 (4600)
T ss_pred cCCcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCc---eeeehhHHHHHHhcCcEEEeec
Confidence 34589999999999999999999999999999998765431 1222 21110 0011110011234677899999
Q ss_pred hhhhcccccccCCCCCChHHHHHHHHHHHh-cCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcc
Q psy5910 114 IDKISKKTDVVSGKDVSGEGVQQSLLKLIE-GVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRIN 192 (225)
Q Consensus 114 id~l~~~~~~~~~~~~~~~~~~~~Ll~~l~-~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~ 192 (225)
.+-++.. +..+|-++|| ++..-+|+......||.+ +++.+|-|.+-+.+|. ..+..|++.||-
T Consensus 964 LNLApTD-------------VLEaLNRLLDDNRelfIPETqevV~PHp~--F~lFATQNppg~YgGR-K~LSrAFRNRFl 1027 (4600)
T COG5271 964 LNLAPTD-------------VLEALNRLLDDNRELFIPETQEVVVPHPN--FRLFATQNPPGGYGGR-KGLSRAFRNRFL 1027 (4600)
T ss_pred cccCcHH-------------HHHHHHHhhccccceecCCcceeeccCCC--eeEEeecCCCccccch-HHHHHHHHhhhH
Confidence 9988866 8999999996 566677888888889998 9999999998888875 489999999983
Q ss_pred cccccccccc
Q psy5910 193 QETNFLEKLN 202 (225)
Q Consensus 193 ~~i~~~~~~~ 202 (225)
. +.|..-.+
T Consensus 1028 E-~hFddipe 1036 (4600)
T COG5271 1028 E-MHFDDIPE 1036 (4600)
T ss_pred h-hhcccCcH
Confidence 3 44544333
No 263
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.50 E-value=2.7e-07 Score=80.68 Aligned_cols=61 Identities=26% Similarity=0.411 Sum_probs=43.8
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh-CCCeEEecc
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII-NVPIIVVDA 73 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~-~~~~~~~~~ 73 (225)
+.++|++++++++...+.....+. ....+-++|.||||+|||+||++|++.+ ..+++.+.+
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl--------~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGL--------EEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhc--------CCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 457999999999987663333332 1233455599999999999999999987 345665544
No 264
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.48 E-value=4e-06 Score=62.11 Aligned_cols=37 Identities=30% Similarity=0.671 Sum_probs=29.9
Q ss_pred eEeecccceeeeCCc-EEEEcCCCCcHHHHHHHHHHHh
Q psy5910 28 LFLLKSKNIYLEKSN-ILLVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 28 ~~~~~~~~~~~~~~~-vLl~Gp~GtGKT~la~~ia~~~ 64 (225)
.+.++++++...++. ++++||||||||++.+.+|...
T Consensus 16 a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 16 AKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred CeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 345666777777765 5599999999999999999876
No 265
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.48 E-value=5.9e-07 Score=73.02 Aligned_cols=140 Identities=19% Similarity=0.213 Sum_probs=79.8
Q ss_pred chhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeE-------------EeccCc
Q psy5910 9 GQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPII-------------VVDATS 75 (225)
Q Consensus 9 G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~-------------~~~~~~ 75 (225)
+|..+++.+..++... .-...+||+|| +||+++|+.+|+.+.+.-. .+..+.
T Consensus 6 ~q~~~~~~L~~~~~~~-------------rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~ 70 (290)
T PRK07276 6 KQPKVFQRFQTILEQD-------------RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGE 70 (290)
T ss_pred HHHHHHHHHHHHHHcC-------------CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCC
Confidence 4677777777766211 11125779996 6899999999988743210 000011
Q ss_pred ccccCcc---CCcH-HHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccc
Q psy5910 76 FTEAGYV---GDDV-ESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITS 151 (225)
Q Consensus 76 ~~~~~~~---g~~~-~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~ 151 (225)
.-+-.+. |..+ ..-++.+.+............|++||++|+|... ..++|++.||+
T Consensus 71 HPD~~~i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~-------------AaNaLLKtLEE------- 130 (290)
T PRK07276 71 FSDVTVIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVN-------------AANSLLKVIEE------- 130 (290)
T ss_pred CCCeeeecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHH-------------HHHHHHHHhcC-------
Confidence 1000011 1110 1223333333221112335579999999999977 79999999997
Q ss_pred cccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhccccccccc
Q psy5910 152 LAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLE 199 (225)
Q Consensus 152 ~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~ 199 (225)
|..+ .++|.+++. ++.+.+.+++|. ..+.|+.
T Consensus 131 ------Pp~~--t~~iL~t~~-------~~~lLpTI~SRc-q~i~f~~ 162 (290)
T PRK07276 131 ------PQSE--IYIFLLTND-------ENKVLPTIKSRT-QIFHFPK 162 (290)
T ss_pred ------CCCC--eEEEEEECC-------hhhCchHHHHcc-eeeeCCC
Confidence 2333 344443333 568999999996 3366655
No 266
>PHA02624 large T antigen; Provisional
Probab=98.47 E-value=4e-07 Score=79.89 Aligned_cols=130 Identities=16% Similarity=0.170 Sum_probs=73.7
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcc
Q psy5910 40 KSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISK 119 (225)
Q Consensus 40 ~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~ 119 (225)
++.++|+||||||||+++.+|++.++.....+++..-...-|.| -....-+++||++-.-.-
T Consensus 431 k~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~FwL~------------------pl~D~~~~l~dD~t~~~~ 492 (647)
T PHA02624 431 RRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLNFELG------------------CAIDQFMVVFEDVKGQPA 492 (647)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhHHHhh------------------hhhhceEEEeeecccccc
Confidence 34566999999999999999999996666667654422111111 113456888998864433
Q ss_pred cccccCCCCCChHHH--HHHHHHHHhcC-CcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccc
Q psy5910 120 KTDVVSGKDVSGEGV--QQSLLKLIEGV-NLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETN 196 (225)
Q Consensus 120 ~~~~~~~~~~~~~~~--~~~Ll~~l~~~-~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~ 196 (225)
...... .+..+ ..-|...|||. ..++... |.++ +-..-.+-|.|+|.-.||..+.-||...+.
T Consensus 493 ~~~~Lp----~G~~~dNl~~lRn~LDG~V~v~ld~K------H~n~----~q~~~PPlliT~Ney~iP~T~~~Rf~~~~~ 558 (647)
T PHA02624 493 DNKDLP----SGQGMNNLDNLRDYLDGSVPVNLEKK------HLNK----RSQIFPPGIVTMNEYLIPQTVKARFAKVLD 558 (647)
T ss_pred ccccCC----cccccchhhHHHhhcCCCCccccchh------ccCc----hhccCCCeEEeecCcccchhHHHHHHHhcc
Confidence 111000 00112 25677888875 3333211 1110 011112223333334799999999999888
Q ss_pred ccccc
Q psy5910 197 FLEKL 201 (225)
Q Consensus 197 ~~~~~ 201 (225)
|....
T Consensus 559 F~~k~ 563 (647)
T PHA02624 559 FKPKP 563 (647)
T ss_pred ccccH
Confidence 87654
No 267
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.46 E-value=4.2e-07 Score=79.67 Aligned_cols=31 Identities=45% Similarity=0.660 Sum_probs=27.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEec
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVD 72 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~ 72 (225)
-+||+|||||||||+++.+|++++..+....
T Consensus 47 iLlLtGP~G~GKtttv~~La~elg~~v~Ew~ 77 (519)
T PF03215_consen 47 ILLLTGPSGCGKTTTVKVLAKELGFEVQEWI 77 (519)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCeeEEec
Confidence 3459999999999999999999998877753
No 268
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.46 E-value=5.3e-07 Score=78.36 Aligned_cols=125 Identities=16% Similarity=0.255 Sum_probs=82.8
Q ss_pred eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCC
Q psy5910 28 LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQ 106 (225)
Q Consensus 28 ~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 106 (225)
...+++.++....+.++ ++|+||||||++++++...+..+.....+..+ |.|.+.-......... ++...-
T Consensus 22 ~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~----~~g~dl~~l~~~~~r~----~rg~~I 93 (539)
T COG1123 22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVI----LDGRDLLGLSEREMRK----LRGKRI 93 (539)
T ss_pred eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEE----ECCcchhcCCHHHHHH----hccccE
Confidence 46789999999999999 99999999999999999988665433333332 4443322221221111 123455
Q ss_pred CEEEEcchhhhcccccccC--------CCCCChHHHHHHHHHHHhcCCcCccccccccCCCCC
Q psy5910 107 SIIYIDEIDKISKKTDVVS--------GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQN 161 (225)
Q Consensus 107 ~vl~iDEid~l~~~~~~~~--------~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~ 161 (225)
+++|-|.+.++.|...... +...+.++......++|+......+... ..||++-
T Consensus 94 a~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~-~~yPheL 155 (539)
T COG1123 94 AMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR-DRYPHQL 155 (539)
T ss_pred EEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh-ccCCccc
Confidence 7888888888877543321 3334467788888999998666555544 5677764
No 269
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.45 E-value=4.4e-07 Score=86.55 Aligned_cols=138 Identities=22% Similarity=0.277 Sum_probs=92.4
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCccccc-CccCCcH--HHHHHHHHHhcchhhhhhCCCEEEEcchhhh
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEA-GYVGDDV--ESIIQKLLHECDYDVELAEQSIIYIDEIDKI 117 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~-~~~g~~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l 117 (225)
+++||-|.||+|||++..++|+..|..+++++.++-.+- ...|.+. +..-.-.|..++..-++..++-+++||++-+
T Consensus 1544 kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLDEiNLa 1623 (4600)
T COG5271 1544 KPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLDEINLA 1623 (4600)
T ss_pred CceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEeehhhhh
Confidence 589999999999999999999999999999998654320 1222211 0000112223333445678899999999987
Q ss_pred cccccccCCCCCChHHHHHHHHHHHhcCC-cCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccc
Q psy5910 118 SKKTDVVSGKDVSGEGVQQSLLKLIEGVN-LSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQE 194 (225)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~-~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~ 194 (225)
..+ +...|-..||-++ .-+|+......-|.+ +.+.+|-|.-.-.+| -..+|..++.||...
T Consensus 1624 SQS-------------VlEGLNacLDhR~eayIPEld~~f~~Hpn--frVFAaqNPq~qggG-RKgLPkSF~nRFsvV 1685 (4600)
T COG5271 1624 SQS-------------VLEGLNACLDHRREAYIPELDKTFDVHPN--FRVFAAQNPQDQGGG-RKGLPKSFLNRFSVV 1685 (4600)
T ss_pred HHH-------------HHHHHHHHHhhccccccccccceeeccCC--eeeeeecCchhcCCC-cccCCHHHhhhhheE
Confidence 755 7888888888443 334444333333444 888888887433333 358999999999765
No 270
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.45 E-value=2.1e-07 Score=65.91 Aligned_cols=31 Identities=39% Similarity=0.793 Sum_probs=27.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCeEEecc
Q psy5910 43 ILLVGPTGCGKTLMVKTLAKIINVPIIVVDA 73 (225)
Q Consensus 43 vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~ 73 (225)
|++.||||+||||+|+.+++.++.+++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 5799999999999999999999887766554
No 271
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.44 E-value=3.2e-06 Score=61.93 Aligned_cols=40 Identities=30% Similarity=0.538 Sum_probs=32.2
Q ss_pred ccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 25 YKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
+......++.++..+.+.++ +.||+|+|||||++.++...
T Consensus 10 ~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 10 YGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred ECCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 33334667778888887776 99999999999999999876
No 272
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.40 E-value=3.3e-06 Score=62.48 Aligned_cols=32 Identities=44% Similarity=0.619 Sum_probs=25.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccC
Q psy5910 43 ILLVGPTGCGKTLMVKTLAKII---NVPIIVVDAT 74 (225)
Q Consensus 43 vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~ 74 (225)
++++||||+|||+++..++... +.++++++..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e 36 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIE 36 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 5799999999999999998877 4556666553
No 273
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.39 E-value=2.7e-06 Score=69.65 Aligned_cols=125 Identities=18% Similarity=0.192 Sum_probs=73.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeE-EeccC----cccccCcc--CCcH-HHHHHHHHHhcchhh-hhhCCCEEEEc
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPII-VVDAT----SFTEAGYV--GDDV-ESIIQKLLHECDYDV-ELAEQSIIYID 112 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~-~~~~~----~~~~~~~~--g~~~-~~~~~~~~~~~~~~~-~~~~~~vl~iD 112 (225)
.+||+|+.|.||+++|+.+++.+.+.-. .++.. ++. -+. |... ..-++.+.+...... .....-|++||
T Consensus 20 aYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~--~~d~~g~~i~vd~Ir~l~~~~~~~~~~~~~~KvvII~ 97 (299)
T PRK07132 20 SFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANII--LFDIFDKDLSKSEFLSAINKLYFSSFVQSQKKILIIK 97 (299)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceE--EeccCCCcCCHHHHHHHHHHhccCCcccCCceEEEEe
Confidence 4569999999999999999998733100 00000 000 011 2111 122333333332211 22467899999
Q ss_pred chhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcc
Q psy5910 113 EIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRIN 192 (225)
Q Consensus 113 Eid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~ 192 (225)
+++++... .+++|++.||+- ... .++|.+++. ++.+-+.+++|.
T Consensus 98 ~~e~m~~~-------------a~NaLLK~LEEP-------------p~~--t~~il~~~~-------~~kll~TI~SRc- 141 (299)
T PRK07132 98 NIEKTSNS-------------LLNALLKTIEEP-------------PKD--TYFLLTTKN-------INKVLPTIVSRC- 141 (299)
T ss_pred cccccCHH-------------HHHHHHHHhhCC-------------CCC--eEEEEEeCC-------hHhChHHHHhCe-
Confidence 99999866 789999999962 222 333333323 467888999985
Q ss_pred cccccccccccc
Q psy5910 193 QETNFLEKLNNN 204 (225)
Q Consensus 193 ~~i~~~~~~~~~ 204 (225)
..+.|..++.+.
T Consensus 142 ~~~~f~~l~~~~ 153 (299)
T PRK07132 142 QVFNVKEPDQQK 153 (299)
T ss_pred EEEECCCCCHHH
Confidence 347777776543
No 274
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.39 E-value=1.1e-06 Score=65.97 Aligned_cols=23 Identities=35% Similarity=0.755 Sum_probs=20.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~ 64 (225)
+++|+|+||+||||+++.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 57899999999999999998888
No 275
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.38 E-value=5.2e-07 Score=74.95 Aligned_cols=46 Identities=24% Similarity=0.547 Sum_probs=40.1
Q ss_pred eeeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 19 VGVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 19 ~~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
+.+...|.....+++.++....+.++ |.|||||||||+.|.||..-
T Consensus 9 ~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe 55 (352)
T COG3842 9 RNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFE 55 (352)
T ss_pred EeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34667777888899999999998888 99999999999999999755
No 276
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.38 E-value=1.5e-06 Score=73.40 Aligned_cols=128 Identities=16% Similarity=0.261 Sum_probs=72.9
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHh-----CCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcch
Q psy5910 40 KSNILLVGPTGCGKTLMVKTLAKII-----NVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEI 114 (225)
Q Consensus 40 ~~~vLl~Gp~GtGKT~la~~ia~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi 114 (225)
..+++||||+|+|||.|++++++.. +..+++++...+.. .++-.-..... .-|++ ...--+++||++
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~-~~v~a~~~~~~-~~Fk~------~y~~dlllIDDi 184 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTN-DFVKALRDNEM-EKFKE------KYSLDLLLIDDI 184 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHH-HHHHHHHhhhH-HHHHH------hhccCeeeechH
Confidence 3578899999999999999999887 23355555544321 01000000000 11111 123459999999
Q ss_pred hhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcc-eeeccCccccHHHHHHhhccc
Q psy5910 115 DKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNI-LFIAGGAFSGIENFIINRINQ 193 (225)
Q Consensus 115 d~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~-~~i~~~~~~~l~~al~~Rf~~ 193 (225)
+.+..+. +.+..|...+..... .+ -.++.|+.. +. ....+.+-+++||.-
T Consensus 185 q~l~gk~-----------~~qeefFh~FN~l~~-------------~~-kqIvltsdr~P~----~l~~~~~rL~SR~~~ 235 (408)
T COG0593 185 QFLAGKE-----------RTQEEFFHTFNALLE-------------NG-KQIVLTSDRPPK----ELNGLEDRLRSRLEW 235 (408)
T ss_pred hHhcCCh-----------hHHHHHHHHHHHHHh-------------cC-CEEEEEcCCCch----hhccccHHHHHHHhc
Confidence 9998662 256666666653210 11 133333333 11 124566899999976
Q ss_pred c--cccccccccc
Q psy5910 194 E--TNFLEKLNNN 204 (225)
Q Consensus 194 ~--i~~~~~~~~~ 204 (225)
- +...+|+.+.
T Consensus 236 Gl~~~I~~Pd~e~ 248 (408)
T COG0593 236 GLVVEIEPPDDET 248 (408)
T ss_pred eeEEeeCCCCHHH
Confidence 5 6777777655
No 277
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.37 E-value=5.3e-07 Score=75.73 Aligned_cols=29 Identities=24% Similarity=0.485 Sum_probs=25.1
Q ss_pred eeCCcEEEEcCCCCcHHHHHHHHHHHhCC
Q psy5910 38 LEKSNILLVGPTGCGKTLMVKTLAKIINV 66 (225)
Q Consensus 38 ~~~~~vLl~Gp~GtGKT~la~~ia~~~~~ 66 (225)
.+++++.|+|++|+|||+|.-...+.+..
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~ 88 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPI 88 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCc
Confidence 34579999999999999999999988754
No 278
>KOG0058|consensus
Probab=98.37 E-value=1.2e-06 Score=77.79 Aligned_cols=46 Identities=26% Similarity=0.468 Sum_probs=37.2
Q ss_pred eeeEecccc---eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 19 VGVYNHYKR---LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 19 ~~l~~~~~~---~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
+.+.+.|.. ...++++++..+++.+. |+||+|.||||+|..+-+.+
T Consensus 469 ~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY 518 (716)
T KOG0058|consen 469 EDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFY 518 (716)
T ss_pred EEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 345555543 34678999999998777 99999999999999999887
No 279
>PRK07261 topology modulation protein; Provisional
Probab=98.35 E-value=2e-06 Score=64.98 Aligned_cols=43 Identities=26% Similarity=0.585 Sum_probs=32.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCc
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDD 85 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~ 85 (225)
.++++|+||+||||+|+.+++.++.+.+..+.-... .+|...+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~-~~~~~~~ 44 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQ-PNWQERD 44 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEec-cccccCC
Confidence 478999999999999999999999887777654332 2344443
No 280
>PHA00729 NTP-binding motif containing protein
Probab=98.35 E-value=9.9e-07 Score=68.92 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=22.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~ 65 (225)
+++|+|+||||||++|.+|++.++
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 789999999999999999999875
No 281
>PRK08118 topology modulation protein; Reviewed
Probab=98.35 E-value=4.6e-07 Score=68.13 Aligned_cols=33 Identities=33% Similarity=0.710 Sum_probs=29.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccC
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDAT 74 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~ 74 (225)
.|+++||||+||||+|+.|++.++.+++.++.-
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l 35 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDAL 35 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchh
Confidence 688999999999999999999999998877753
No 282
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.33 E-value=4.3e-06 Score=67.50 Aligned_cols=43 Identities=19% Similarity=0.478 Sum_probs=35.5
Q ss_pred EecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 22 YNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
...+.......++++..+.+.++ |.||||+||||+.|.||...
T Consensus 9 ~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe 52 (345)
T COG1118 9 KKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLE 52 (345)
T ss_pred hhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcC
Confidence 34455556666788888888888 99999999999999999876
No 283
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.29 E-value=1.9e-06 Score=68.57 Aligned_cols=47 Identities=26% Similarity=0.454 Sum_probs=41.8
Q ss_pred eeeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910 19 VGVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 19 ~~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~ 65 (225)
+.+...|+....+++.++..+.+.++ +.||.|||||||.|++++.+.
T Consensus 6 ~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 6 ENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred EEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 45677788888899999999998888 999999999999999999774
No 284
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.29 E-value=1.1e-05 Score=60.38 Aligned_cols=44 Identities=18% Similarity=0.440 Sum_probs=35.3
Q ss_pred eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
+...|.......+.++..+++.++ |.||+|+|||||.+.++...
T Consensus 6 l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 6 ITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344444445777888888888777 99999999999999999876
No 285
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.28 E-value=4e-06 Score=72.99 Aligned_cols=144 Identities=19% Similarity=0.301 Sum_probs=85.0
Q ss_pred eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhCCC--eEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhh
Q psy5910 28 LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIINVP--IIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELA 104 (225)
Q Consensus 28 ~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 104 (225)
.+++++.++....+.++ |+|+|||||||+||.|+...... .+.+++.++ ... +.. ...+ ..
T Consensus 304 ~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~-~~~--~~~----~~~~---------r~ 367 (539)
T COG1123 304 VKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDL-DLT--GGE----LRRL---------RR 367 (539)
T ss_pred eeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccc-ccc--cch----hhhh---------hh
Confidence 57789999999999999 99999999999999999876321 233333331 110 111 1111 12
Q ss_pred CCCEEEEcchhhhcccccccC--------CCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCc-----e---eEEe
Q psy5910 105 EQSIIYIDEIDKISKKTDVVS--------GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQ-----V---FNID 168 (225)
Q Consensus 105 ~~~vl~iDEid~l~~~~~~~~--------~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~-----~---~~i~ 168 (225)
.--++|.|...++.|..+... +......+....+..+|+..... .....++|++-.+ + ..++
T Consensus 368 ~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~--~~~l~ryP~elSGGQrQRvaIARALa 445 (539)
T COG1123 368 RIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLP--PEFLDRYPHELSGGQRQRVAIARALA 445 (539)
T ss_pred heEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCC--HHHHhcCchhcCcchhHHHHHHHHHh
Confidence 446999999999988776432 12221233333455556653333 3334455554311 1 2345
Q ss_pred cCcceeeccCccccHHHHHHh
Q psy5910 169 TTNILFIAGGAFSGIENFIIN 189 (225)
Q Consensus 169 ttn~~~i~~~~~~~l~~al~~ 189 (225)
+.-.+.||+-....||+.+..
T Consensus 446 ~~P~lli~DEp~SaLDvsvqa 466 (539)
T COG1123 446 LEPKLLILDEPVSALDVSVQA 466 (539)
T ss_pred cCCCEEEecCCccccCHHHHH
Confidence 555667777666677765543
No 286
>KOG2680|consensus
Probab=98.27 E-value=1.3e-06 Score=70.22 Aligned_cols=38 Identities=24% Similarity=0.487 Sum_probs=31.3
Q ss_pred eCCcEEEEcCCCCcHHHHHHHHHHHhC--CCeEEeccCcc
Q psy5910 39 EKSNILLVGPTGCGKTLMVKTLAKIIN--VPIIVVDATSF 76 (225)
Q Consensus 39 ~~~~vLl~Gp~GtGKT~la~~ia~~~~--~~~~~~~~~~~ 76 (225)
..+.+|+.|+||||||.+|-.+++.+| .||..+.++.+
T Consensus 65 aGraiLiaG~pgtGKtAiAmg~sksLG~~tpF~~i~gSEI 104 (454)
T KOG2680|consen 65 AGRAILIAGQPGTGKTAIAMGMSKSLGDDTPFTSISGSEI 104 (454)
T ss_pred cceEEEEecCCCCCceeeeeehhhhhCCCCceeeeeccee
Confidence 345788999999999999999999996 47777777655
No 287
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=98.26 E-value=4.3e-06 Score=70.84 Aligned_cols=86 Identities=14% Similarity=0.222 Sum_probs=51.8
Q ss_pred eCCcEEEEcCCCCcHHHHHHHHHHHhCC-CeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhh
Q psy5910 39 EKSNILLVGPTGCGKTLMVKTLAKIINV-PIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKI 117 (225)
Q Consensus 39 ~~~~vLl~Gp~GtGKT~la~~ia~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l 117 (225)
...++++.||+|||||.++.+++...-+ .-... +....+..+.....+. -...-+|+|||+..+
T Consensus 208 ~~~Nli~lGp~GTGKThla~~l~~~~a~~sG~f~-------------T~a~Lf~~L~~~~lg~--v~~~DlLI~DEvgyl 272 (449)
T TIGR02688 208 PNYNLIELGPKGTGKSYIYNNLSPYVILISGGTI-------------TVAKLFYNISTRQIGL--VGRWDVVAFDEVATL 272 (449)
T ss_pred cCCcEEEECCCCCCHHHHHHHHhHHHHHHcCCcC-------------cHHHHHHHHHHHHHhh--hccCCEEEEEcCCCC
Confidence 3459999999999999999998866200 00111 1122222222211111 135679999999997
Q ss_pred cccccccCCCCCChHHHHHHHHHHHhcCCcC
Q psy5910 118 SKKTDVVSGKDVSGEGVQQSLLKLIEGVNLS 148 (225)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~ 148 (225)
.-.. .++..+.|...|+....+
T Consensus 273 p~~~---------~~~~v~imK~yMesg~fs 294 (449)
T TIGR02688 273 KFAK---------PKELIGILKNYMESGSFT 294 (449)
T ss_pred cCCc---------hHHHHHHHHHHHHhCcee
Confidence 6442 123677888888865544
No 288
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.23 E-value=1.4e-06 Score=65.50 Aligned_cols=33 Identities=36% Similarity=0.519 Sum_probs=28.5
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEec
Q psy5910 40 KSNILLVGPTGCGKTLMVKTLAKIINVPIIVVD 72 (225)
Q Consensus 40 ~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~ 72 (225)
+..++|+|+||||||++|+.+|+.++.+++..+
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 347889999999999999999999988777543
No 289
>PF05729 NACHT: NACHT domain
Probab=98.23 E-value=1.8e-05 Score=58.73 Aligned_cols=23 Identities=26% Similarity=0.592 Sum_probs=20.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~ 64 (225)
-++++|+||+|||++++.++..+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 46799999999999999999777
No 290
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.22 E-value=1.9e-06 Score=71.22 Aligned_cols=45 Identities=29% Similarity=0.649 Sum_probs=36.1
Q ss_pred eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
.+...|+....++++++....+..+ |.|||||||||+.|.||...
T Consensus 8 ~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 8 NVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred eeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3445555444778888989888777 99999999999999999766
No 291
>KOG1514|consensus
Probab=98.19 E-value=6.2e-06 Score=73.02 Aligned_cols=130 Identities=15% Similarity=0.274 Sum_probs=79.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh----------CCCeEEeccCccccc---------CccCCcHH--HHHHHHHHhcchh
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKII----------NVPIIVVDATSFTEA---------GYVGDDVE--SIIQKLLHECDYD 100 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~----------~~~~~~~~~~~~~~~---------~~~g~~~~--~~~~~~~~~~~~~ 100 (225)
.+.+.|-||||||...+.+.+.+ ...++.+|+-.+.+. .+.|.... ..+..+.......
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 45599999999999998888765 345788888665431 12333211 1122221111111
Q ss_pred hhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCcc
Q psy5910 101 VELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAF 180 (225)
Q Consensus 101 ~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~ 180 (225)
-....++||+|||.|.|..+ -|..|..+++=- ..+... .++|+..|. .
T Consensus 504 k~~~~~~VvLiDElD~Lvtr-------------~QdVlYn~fdWp----------t~~~sK--Lvvi~IaNT-------m 551 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVTR-------------SQDVLYNIFDWP----------TLKNSK--LVVIAIANT-------M 551 (767)
T ss_pred CCCCCCEEEEeccHHHHhcc-------------cHHHHHHHhcCC----------cCCCCc--eEEEEeccc-------c
Confidence 12346799999999999977 377787887721 112222 666666666 3
Q ss_pred ccHHHHHH-----hhcccc-cccccccccc
Q psy5910 181 SGIENFII-----NRINQE-TNFLEKLNNN 204 (225)
Q Consensus 181 ~~l~~al~-----~Rf~~~-i~~~~~~~~~ 204 (225)
++++-++ +|+... |.|.+.+.++
T Consensus 552 -dlPEr~l~nrvsSRlg~tRi~F~pYth~q 580 (767)
T KOG1514|consen 552 -DLPERLLMNRVSSRLGLTRICFQPYTHEQ 580 (767)
T ss_pred -cCHHHHhccchhhhccceeeecCCCCHHH
Confidence 4555443 377666 8888888766
No 292
>KOG0056|consensus
Probab=98.19 E-value=3.7e-05 Score=66.00 Aligned_cols=58 Identities=24% Similarity=0.438 Sum_probs=42.7
Q ss_pred eeeEeccc-ceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhCC--CeEEeccCcc
Q psy5910 19 VGVYNHYK-RLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIINV--PIIVVDATSF 76 (225)
Q Consensus 19 ~~l~~~~~-~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~~--~~~~~~~~~~ 76 (225)
..+.+.|. +.+.++++++..+++..+ |+||||.||||+.|.+-+..+. ..+.+++.++
T Consensus 541 snvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdI 602 (790)
T KOG0056|consen 541 SNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDI 602 (790)
T ss_pred EEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchH
Confidence 34455554 456778899999888777 9999999999999999987732 3455555433
No 293
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.17 E-value=1.8e-05 Score=61.12 Aligned_cols=32 Identities=34% Similarity=0.559 Sum_probs=23.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEecc
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVVDA 73 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~ 73 (225)
-.++.||||||||++++.+...+ +..++.+.+
T Consensus 20 ~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~ap 54 (196)
T PF13604_consen 20 VSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAP 54 (196)
T ss_dssp EEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEES
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECC
Confidence 45588999999999999887766 445555544
No 294
>PRK13947 shikimate kinase; Provisional
Probab=98.17 E-value=2.2e-06 Score=64.50 Aligned_cols=32 Identities=38% Similarity=0.517 Sum_probs=28.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEecc
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDA 73 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~ 73 (225)
++++.|+||||||++|+.+|+.++.+++..+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~ 34 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDK 34 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECch
Confidence 68899999999999999999999998866543
No 295
>PRK03839 putative kinase; Provisional
Probab=98.17 E-value=2e-06 Score=65.40 Aligned_cols=31 Identities=29% Similarity=0.411 Sum_probs=27.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEec
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVD 72 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~ 72 (225)
.|+|.|+||+||||+++.+|+.++.+++..+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 4789999999999999999999998887654
No 296
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.17 E-value=1.2e-05 Score=73.19 Aligned_cols=46 Identities=22% Similarity=0.340 Sum_probs=36.5
Q ss_pred eeeEecccc--eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 19 VGVYNHYKR--LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 19 ~~l~~~~~~--~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
+.+.+.|.. +..+.+.++..+++..+ ++|++|||||||+|.+...+
T Consensus 475 ~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 475 ENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred EEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344555544 35778889999887655 99999999999999999877
No 297
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.17 E-value=1.8e-05 Score=59.99 Aligned_cols=41 Identities=37% Similarity=0.601 Sum_probs=29.5
Q ss_pred ecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 23 NHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
..++......+ .+..+.+.++ |.||+|+|||||.+.++...
T Consensus 8 ~~~~~~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 8 KRYGVFFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EEECCEEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 33444444444 2456666666 99999999999999999876
No 298
>PRK00625 shikimate kinase; Provisional
Probab=98.16 E-value=2.3e-06 Score=64.64 Aligned_cols=32 Identities=38% Similarity=0.558 Sum_probs=28.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEecc
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDA 73 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~ 73 (225)
+|+|+|.||+||||+++.+|+.++.+++..+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~ 33 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDD 33 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhH
Confidence 58899999999999999999999998877654
No 299
>PHA02774 E1; Provisional
Probab=98.15 E-value=1.7e-05 Score=69.63 Aligned_cols=77 Identities=23% Similarity=0.399 Sum_probs=48.4
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhCCCe-EEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhc
Q psy5910 40 KSNILLVGPTGCGKTLMVKTLAKIINVPI-IVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKIS 118 (225)
Q Consensus 40 ~~~vLl~Gp~GtGKT~la~~ia~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~ 118 (225)
+..++|+||||||||++|.+|++.++... ..+|... .-| +..+ ..--+++|||+-.-.
T Consensus 434 knciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s---~Fw--------Lqpl----------~d~ki~vlDD~t~~~ 492 (613)
T PHA02774 434 KNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKS---HFW--------LQPL----------ADAKIALLDDATHPC 492 (613)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECcc---ccc--------cchh----------ccCCEEEEecCcchH
Confidence 35788999999999999999999985443 3344321 111 1111 233599999982221
Q ss_pred ccccccCCCCCChHHHHHHHHHHHhcCCcCc
Q psy5910 119 KKTDVVSGKDVSGEGVQQSLLKLIEGVNLSI 149 (225)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~ 149 (225)
-. -+...|..+|++...++
T Consensus 493 w~------------y~d~~Lrn~LdG~~v~l 511 (613)
T PHA02774 493 WD------------YIDTYLRNALDGNPVSI 511 (613)
T ss_pred HH------------HHHHHHHHHcCCCccee
Confidence 11 14557888999865443
No 300
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.15 E-value=7.2e-06 Score=68.62 Aligned_cols=134 Identities=16% Similarity=0.235 Sum_probs=88.0
Q ss_pred eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCcHHHHHHHHHHhcch
Q psy5910 21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDY 99 (225)
Q Consensus 21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (225)
+.........++++++....+..+ ++|+||+|||..|.++.+.+..+-...-.+.+ .|.|.+.-..........
T Consensus 16 f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i---~f~G~dll~~se~~lr~i-- 90 (534)
T COG4172 16 FHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSI---LFDGEDLLAASERQLRGV-- 90 (534)
T ss_pred EecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCcccee---EEcChhhhcCCHHHHhhh--
Confidence 333334667788999999999888 99999999999999999998664332222222 266665433333322222
Q ss_pred hhhhhCCCEEEEcchhhhccccc------ccC--CCCCChHHHHHHHHHHHhcCCcCccccccccCCCCC
Q psy5910 100 DVELAEQSIIYIDEIDKISKKTD------VVS--GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQN 161 (225)
Q Consensus 100 ~~~~~~~~vl~iDEid~l~~~~~------~~~--~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~ 161 (225)
+-.+-++||-+..-++.|-.. ... |...+...+....+++|+.....-+......||++-
T Consensus 91 --RG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeL 158 (534)
T COG4172 91 --RGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHEL 158 (534)
T ss_pred --cccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCccc
Confidence 222445666655555544322 221 566677778889999999887777777777888875
No 301
>PRK10536 hypothetical protein; Provisional
Probab=98.14 E-value=3.4e-05 Score=61.45 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=20.1
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~ 63 (225)
.-++++||+|||||+||.+++..
T Consensus 75 ~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 75 QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36779999999999999998874
No 302
>KOG1970|consensus
Probab=98.13 E-value=1.6e-05 Score=68.72 Aligned_cols=32 Identities=41% Similarity=0.707 Sum_probs=28.0
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhCCCeEEec
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKIINVPIIVVD 72 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~ 72 (225)
+-+||+||+||||||..+.+++++|..+....
T Consensus 111 ~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 111 RILLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred eEEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 34559999999999999999999998887765
No 303
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.13 E-value=3.2e-06 Score=62.31 Aligned_cols=31 Identities=42% Similarity=0.723 Sum_probs=27.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEec
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVD 72 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~ 72 (225)
+++++|+||||||++|+.+++.++.+++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4789999999999999999999988876554
No 304
>KOG0055|consensus
Probab=98.13 E-value=3.8e-05 Score=72.35 Aligned_cols=59 Identities=20% Similarity=0.406 Sum_probs=42.7
Q ss_pred eeeEecccc---eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhCC--CeEEeccCccc
Q psy5910 19 VGVYNHYKR---LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIINV--PIIVVDATSFT 77 (225)
Q Consensus 19 ~~l~~~~~~---~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~~--~~~~~~~~~~~ 77 (225)
+.+.+.|.. ...+++.++..+.+.-+ |+|||||||||+...+-+.++. -.+.+++.++.
T Consensus 991 ~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik 1055 (1228)
T KOG0055|consen 991 RNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIK 1055 (1228)
T ss_pred eeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccc
Confidence 445555543 24467888888888777 9999999999999999998843 35566665543
No 305
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.12 E-value=7.4e-06 Score=65.42 Aligned_cols=26 Identities=31% Similarity=0.519 Sum_probs=23.1
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhCC
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKIINV 66 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~~~ 66 (225)
..++|+||+||||||+++.+++....
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccc
Confidence 46789999999999999999988754
No 306
>PRK06217 hypothetical protein; Validated
Probab=98.12 E-value=3.2e-06 Score=64.46 Aligned_cols=32 Identities=28% Similarity=0.531 Sum_probs=28.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEecc
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDA 73 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~ 73 (225)
.|+|.|+||+||||+|+.|++.++.+++..+.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~ 34 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTDD 34 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcCc
Confidence 58899999999999999999999988776653
No 307
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=98.11 E-value=2.7e-06 Score=63.45 Aligned_cols=33 Identities=42% Similarity=0.692 Sum_probs=30.0
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhCCCeEEecc
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKIINVPIIVVDA 73 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~ 73 (225)
.+++|+|++|+||||+.+.+|+.++.+|+-.+.
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~ 35 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQ 35 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchH
Confidence 478999999999999999999999999987655
No 308
>PRK13949 shikimate kinase; Provisional
Probab=98.11 E-value=3.2e-06 Score=63.70 Aligned_cols=31 Identities=42% Similarity=0.628 Sum_probs=28.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEec
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVD 72 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~ 72 (225)
+++|+|+||+||||+++.+|+.++.+++..+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 6889999999999999999999998877665
No 309
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.10 E-value=3.4e-05 Score=64.94 Aligned_cols=35 Identities=31% Similarity=0.449 Sum_probs=25.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHh----C-CCeEEeccCc
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKII----N-VPIIVVDATS 75 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~----~-~~~~~~~~~~ 75 (225)
..++|+||+|+||||++..++..+ + ..+..++...
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~ 177 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDS 177 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 355599999999999999998764 2 2445555444
No 310
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.10 E-value=2.2e-05 Score=65.78 Aligned_cols=119 Identities=18% Similarity=0.303 Sum_probs=75.0
Q ss_pred cceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhCCC-eEEeccCcccccCccCCcHHHHHHHHHHhcchhhhh
Q psy5910 26 KRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIINVP-IIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVEL 103 (225)
Q Consensus 26 ~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 103 (225)
...++++++++....+..| ++|+|||||||+.+++.+.+... -+.+.+.++.. + + +....- -+
T Consensus 298 ~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~--~---~-----~~~mrp-----lR 362 (534)
T COG4172 298 DHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDG--L---S-----RKEMRP-----LR 362 (534)
T ss_pred hheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccc--c---C-----hhhhhh-----hh
Confidence 3467788999999998888 99999999999999999987443 33344433321 1 1 111111 12
Q ss_pred hCCCEEEEcchhhhcccccccC--------C-CCCChHHHHHHHHHHHhcCCcCccccccccCCCCC
Q psy5910 104 AEQSIIYIDEIDKISKKTDVVS--------G-KDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQN 161 (225)
Q Consensus 104 ~~~~vl~iDEid~l~~~~~~~~--------~-~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~ 161 (225)
.+-.++|-|...++.|+.+... + ...+..+-.+.....|.+.. .+.....+||++-
T Consensus 363 ~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVG--LDp~~r~RYPhEF 427 (534)
T COG4172 363 RRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVG--LDPATRNRYPHEF 427 (534)
T ss_pred hhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcC--CChhHhhcCCccc
Confidence 2446999999999999876432 1 23333334455666666533 3344455666653
No 311
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.09 E-value=3.3e-05 Score=57.31 Aligned_cols=41 Identities=29% Similarity=0.608 Sum_probs=32.3
Q ss_pred ccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910 25 YKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~ 65 (225)
+.....+.+.++..+++.++ |.||+|+||||++++++..+.
T Consensus 9 ~~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 9 YGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred eCCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 33335667777877776666 999999999999999998763
No 312
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.09 E-value=3.5e-06 Score=61.80 Aligned_cols=28 Identities=29% Similarity=0.544 Sum_probs=25.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q psy5910 43 ILLVGPTGCGKTLMVKTLAKIINVPIIV 70 (225)
Q Consensus 43 vLl~Gp~GtGKT~la~~ia~~~~~~~~~ 70 (225)
+-+.|||||||||+|+.||+.+|.+++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 4588999999999999999999998764
No 313
>PRK14532 adenylate kinase; Provisional
Probab=98.08 E-value=3.9e-06 Score=64.21 Aligned_cols=29 Identities=28% Similarity=0.445 Sum_probs=25.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIV 70 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~ 70 (225)
++++.|||||||||+|+.+|+.++.+++.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is 30 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLS 30 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 57899999999999999999998875543
No 314
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=98.08 E-value=1.8e-05 Score=58.26 Aligned_cols=34 Identities=29% Similarity=0.602 Sum_probs=28.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcc
Q psy5910 43 ILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSF 76 (225)
Q Consensus 43 vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~ 76 (225)
+++.|+||+||||+|+.++..+ +...+.++...+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~ 38 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNV 38 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 5699999999999999999998 666677766544
No 315
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.06 E-value=3.5e-05 Score=60.39 Aligned_cols=41 Identities=24% Similarity=0.455 Sum_probs=36.3
Q ss_pred ccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910 25 YKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~ 65 (225)
......++++++....+..+ |+|++|+|||||.|.|+..+.
T Consensus 37 ~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~ 78 (249)
T COG1134 37 VAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK 78 (249)
T ss_pred cceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccC
Confidence 34567789999999999999 999999999999999998873
No 316
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.06 E-value=2.6e-06 Score=64.64 Aligned_cols=59 Identities=20% Similarity=0.321 Sum_probs=36.6
Q ss_pred eechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCC---eEEeccCcc
Q psy5910 7 IIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVP---IIVVDATSF 76 (225)
Q Consensus 7 i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~---~~~~~~~~~ 76 (225)
++|.++.++++...+. .... ...+.++++|++|+|||++++.+...+..+ ++..++...
T Consensus 2 fvgR~~e~~~l~~~l~-~~~~----------~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-AAQS----------GSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTG-GTSS---------------EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHH-HHHc----------CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 5789999999988773 2211 233578899999999999999888776333 555555443
No 317
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.06 E-value=3e-06 Score=61.68 Aligned_cols=32 Identities=38% Similarity=0.713 Sum_probs=25.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcc
Q psy5910 43 ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSF 76 (225)
Q Consensus 43 vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~ 76 (225)
+++.|||||||||+|+.+++.++ ...++...+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~ 33 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEI 33 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHH
Confidence 57999999999999999999887 444554443
No 318
>PRK14531 adenylate kinase; Provisional
Probab=98.05 E-value=5.7e-06 Score=63.14 Aligned_cols=29 Identities=24% Similarity=0.463 Sum_probs=25.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIV 70 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~ 70 (225)
.+++.||||+||||+|+.+++.++.+.+.
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g~~~is 32 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHGLRHLS 32 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEe
Confidence 68899999999999999999999876544
No 319
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.05 E-value=3.2e-05 Score=58.84 Aligned_cols=32 Identities=28% Similarity=0.283 Sum_probs=25.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccC
Q psy5910 43 ILLVGPTGCGKTLMVKTLAKII---NVPIIVVDAT 74 (225)
Q Consensus 43 vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~ 74 (225)
++++||||||||+++..++... +.++.+++..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e 36 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE 36 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 6799999999999998776544 6667776653
No 320
>PRK13948 shikimate kinase; Provisional
Probab=98.04 E-value=6.3e-06 Score=62.76 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=30.9
Q ss_pred eeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEec
Q psy5910 38 LEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVD 72 (225)
Q Consensus 38 ~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~ 72 (225)
.+..+++|+|.+||||||+++.+|+.++.+++..+
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 45568999999999999999999999999988665
No 321
>PRK14974 cell division protein FtsY; Provisional
Probab=98.04 E-value=9.1e-05 Score=61.70 Aligned_cols=33 Identities=27% Similarity=0.511 Sum_probs=25.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccC
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVVDAT 74 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~ 74 (225)
-++|+||+|+||||++..+|..+ +..+..+++.
T Consensus 142 vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~D 177 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGD 177 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 46699999999999988888766 4455555554
No 322
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=98.04 E-value=5.5e-06 Score=63.03 Aligned_cols=31 Identities=16% Similarity=0.339 Sum_probs=25.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCc
Q psy5910 43 ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATS 75 (225)
Q Consensus 43 vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~ 75 (225)
++++||||+||||+|+.+++.++... ++.++
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~--is~~d 32 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTH--LSAGD 32 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE--EECCh
Confidence 57999999999999999999987644 44433
No 323
>PRK14530 adenylate kinase; Provisional
Probab=98.04 E-value=5.8e-06 Score=64.71 Aligned_cols=30 Identities=33% Similarity=0.498 Sum_probs=26.4
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKIINVPIIV 70 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~ 70 (225)
+.++|.||||+||||+|+.|++.++.+++.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~ 33 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVT 33 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 368899999999999999999999876653
No 324
>KOG2227|consensus
Probab=98.02 E-value=8.2e-06 Score=69.25 Aligned_cols=161 Identities=19% Similarity=0.235 Sum_probs=89.9
Q ss_pred eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh----CC-CeEEeccCcccccC
Q psy5910 6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII----NV-PIIVVDATSFTEAG 80 (225)
Q Consensus 6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~----~~-~~~~~~~~~~~~~~ 80 (225)
.++|.+.....+...+..+... ...+.+.+.|-||||||.+...+-..+ .. ..++++|..+..+.
T Consensus 151 ~l~gRe~e~~~v~~F~~~hle~----------~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSLHLEL----------NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CccchHHHHHHHHHHHHhhhhc----------ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 4677777777777766444332 234567799999999998877555443 22 34888888764321
Q ss_pred ---------c----cCCcHHHHHHHHHHhcchhhhh-hCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCC
Q psy5910 81 ---------Y----VGDDVESIIQKLLHECDYDVEL-AEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVN 146 (225)
Q Consensus 81 ---------~----~g~~~~~~~~~~~~~~~~~~~~-~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~ 146 (225)
+ .+..........|.. .... ...-++++||+|.+..+. +..|+.+++=
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~---h~~q~k~~~llVlDEmD~L~tr~-------------~~vLy~lFew-- 282 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEK---HTKQSKFMLLLVLDEMDHLITRS-------------QTVLYTLFEW-- 282 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHH---HHhcccceEEEEechhhHHhhcc-------------cceeeeehhc--
Confidence 1 111101000111111 0111 236799999999999663 4455555541
Q ss_pred cCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhccc-------ccccccccccc--chhcccCC
Q psy5910 147 LSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQ-------ETNFLEKLNNN--YNLICETN 212 (225)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~-------~i~~~~~~~~~--~~l~~~~~ 212 (225)
...|..+ +++|+..|. . ++-+-++-|+.- .+.|++...++ +++...++
T Consensus 283 --------p~lp~sr--~iLiGiANs-------l-DlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~ 339 (529)
T KOG2227|consen 283 --------PKLPNSR--IILIGIANS-------L-DLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLS 339 (529)
T ss_pred --------ccCCcce--eeeeeehhh-------h-hHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHh
Confidence 1123333 666776666 3 444444443322 28888888877 55555544
No 325
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=98.02 E-value=5.3e-06 Score=62.79 Aligned_cols=33 Identities=21% Similarity=0.433 Sum_probs=27.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccC
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDAT 74 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~ 74 (225)
-++|.|+||+||||+|+.+++.++.+++.++..
T Consensus 4 ~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D 36 (175)
T cd00227 4 IIILNGGSSAGKSSIARALQSVLAEPWLHFGVD 36 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCCccccCcc
Confidence 466999999999999999999988777655544
No 326
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.02 E-value=2.1e-05 Score=66.23 Aligned_cols=25 Identities=32% Similarity=0.577 Sum_probs=22.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~~ 65 (225)
...+|+||||||||+|++.|++...
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHH
Confidence 4688999999999999999998773
No 327
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.01 E-value=8.5e-06 Score=63.64 Aligned_cols=45 Identities=20% Similarity=0.532 Sum_probs=40.8
Q ss_pred eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
.+...++.....++.++..+++.++ +.||||||||++.|.|...+
T Consensus 13 ~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll 58 (263)
T COG1127 13 GVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLL 58 (263)
T ss_pred eeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccC
Confidence 4567778888899999999999999 99999999999999999777
No 328
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=98.00 E-value=6.9e-06 Score=59.96 Aligned_cols=30 Identities=37% Similarity=0.636 Sum_probs=26.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCeEEec
Q psy5910 43 ILLVGPTGCGKTLMVKTLAKIINVPIIVVD 72 (225)
Q Consensus 43 vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~ 72 (225)
+.+.|+|||||||+|+.+++.++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 568999999999999999999999887665
No 329
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=98.00 E-value=7.9e-06 Score=61.72 Aligned_cols=33 Identities=39% Similarity=0.649 Sum_probs=29.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhCCCeEEecc
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKIINVPIIVVDA 73 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~ 73 (225)
.+++|+|++|+||||+++.+++.++.+++..+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 478899999999999999999999988876654
No 330
>PRK04296 thymidine kinase; Provisional
Probab=98.00 E-value=3.9e-05 Score=58.88 Aligned_cols=31 Identities=16% Similarity=0.235 Sum_probs=23.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCCeEEecc
Q psy5910 43 ILLVGPTGCGKTLMVKTLAKII---NVPIIVVDA 73 (225)
Q Consensus 43 vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~ 73 (225)
.+++||+|+||||++..++..+ +..++.+.+
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 5689999999999988777655 555555543
No 331
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.99 E-value=1.2e-05 Score=60.70 Aligned_cols=50 Identities=22% Similarity=0.370 Sum_probs=38.8
Q ss_pred eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhCC--CeEEeccCccc
Q psy5910 28 LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIINV--PIIVVDATSFT 77 (225)
Q Consensus 28 ~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~~--~~~~~~~~~~~ 77 (225)
...+++.+++.+++.+. ++||||+||||+.+.|...... --+.++..++.
T Consensus 15 ~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~ 67 (223)
T COG2884 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLS 67 (223)
T ss_pred chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecc
Confidence 44778889999998887 8999999999999999987632 24555555553
No 332
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.98 E-value=0.00011 Score=56.75 Aligned_cols=35 Identities=37% Similarity=0.626 Sum_probs=24.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcc
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSF 76 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~ 76 (225)
-++|+||+|+||||.+-.+|..+ +..+..++....
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~ 40 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTY 40 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTS
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCC
Confidence 45699999999999887777666 555555555443
No 333
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.98 E-value=7.9e-06 Score=62.66 Aligned_cols=29 Identities=45% Similarity=0.690 Sum_probs=25.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIV 70 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~ 70 (225)
.|+++||||+||||+|+.|++.++.+++.
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~ 29 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYGLPHIS 29 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 37899999999999999999998776544
No 334
>PRK06762 hypothetical protein; Provisional
Probab=97.98 E-value=7.5e-06 Score=61.34 Aligned_cols=36 Identities=25% Similarity=0.409 Sum_probs=29.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCccc
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFT 77 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~ 77 (225)
-+++.|+|||||||+|+.+++.++..+..++...+.
T Consensus 4 li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r 39 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVR 39 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHH
Confidence 456999999999999999999986667777665543
No 335
>KOG1808|consensus
Probab=97.97 E-value=1.3e-05 Score=78.17 Aligned_cols=138 Identities=24% Similarity=0.284 Sum_probs=95.6
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCccccc-CccCCcHH-HHHHHHHHhcchhhhhhCCCEEEEcchhhhc
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEA-GYVGDDVE-SIIQKLLHECDYDVELAEQSIIYIDEIDKIS 118 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~-~~~g~~~~-~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~ 118 (225)
-++||.||.|||||.++..+|...+..+++++-....+. .|.|.-.. ..-...|+.....-+...+..+++||++-++
T Consensus 441 ~pillqG~tssGKtsii~~la~~~g~~~vrinnhehtd~qeyig~y~~~~~g~l~freg~LV~Alr~G~~~vlD~lnla~ 520 (1856)
T KOG1808|consen 441 FPILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQEYIGTYVADDNGDLVFREGVLVQALRNGDWIVLDELNLAP 520 (1856)
T ss_pred CCeEEecCcCcCchhHHHHHHHHhccCceehhccccchHHHHHHhhhcCCCCCeeeehhHHHHHHHhCCEEEeccccccc
Confidence 489999999999999999999999999999887555331 12220000 0000011111011123588999999999988
Q ss_pred ccccccCCCCCChHHHHHHHHHHHhc-CCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccc
Q psy5910 119 KKTDVVSGKDVSGEGVQQSLLKLIEG-VNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQE 194 (225)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~Ll~~l~~-~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~ 194 (225)
.. +..+|.++++. ....+++......++.+ +++++|-|.+-..++. ..+..+++.||...
T Consensus 521 ~d-------------vL~aLnrllddnRel~ipe~~rlv~~h~~--f~lfatqn~~~~y~gr-k~lsRa~~~rf~e~ 581 (1856)
T KOG1808|consen 521 HD-------------VLEALNRLLDDNRELFIPETQRLVKAHPE--FMLFATQNPPGTYGGR-KILSRALRNRFIEL 581 (1856)
T ss_pred hH-------------HHHHHHhhhhhhccccccccceeeccCcc--hhhhhhccCccccchh-hhhhhcccccchhh
Confidence 66 78999999975 77777777777777777 8999999986544443 36777888887554
No 336
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.97 E-value=7e-06 Score=61.28 Aligned_cols=32 Identities=22% Similarity=0.531 Sum_probs=25.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcc
Q psy5910 43 ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSF 76 (225)
Q Consensus 43 vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~ 76 (225)
+++.|||||||||+|+.+++.++..+ ++..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~--v~~D~~ 32 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKF--IEGDDL 32 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeE--EeCccc
Confidence 46899999999999999999998655 444443
No 337
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.96 E-value=2.2e-05 Score=58.02 Aligned_cols=37 Identities=24% Similarity=0.533 Sum_probs=31.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccc
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTE 78 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~ 78 (225)
-|+|+|.||+||||+|+++.+.+ +.+.+.+++..+..
T Consensus 4 vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~ 43 (156)
T PF01583_consen 4 VIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRH 43 (156)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhh
Confidence 35599999999999999999888 78899999877754
No 338
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.95 E-value=8.9e-06 Score=59.82 Aligned_cols=32 Identities=34% Similarity=0.658 Sum_probs=25.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcc
Q psy5910 43 ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSF 76 (225)
Q Consensus 43 vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~ 76 (225)
+++.|+||+||||+|+.+++.++..++ +...+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i--~~D~~ 33 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFI--DGDDL 33 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEE--eCccc
Confidence 569999999999999999999876544 44444
No 339
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.95 E-value=8.9e-06 Score=61.71 Aligned_cols=31 Identities=39% Similarity=0.693 Sum_probs=25.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccC
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDAT 74 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~ 74 (225)
.+++.||||+||||+|+.|++.++. ..++..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i--~hlstg 32 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGL--PHLDTG 32 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC--cEEcHh
Confidence 5789999999999999999999544 555533
No 340
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.95 E-value=0.00012 Score=57.90 Aligned_cols=33 Identities=24% Similarity=0.404 Sum_probs=23.1
Q ss_pred CcEEEEcCCCCcHHHHHHHH-HHHh--CCCeEEecc
Q psy5910 41 SNILLVGPTGCGKTLMVKTL-AKII--NVPIIVVDA 73 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~i-a~~~--~~~~~~~~~ 73 (225)
.-++++||||||||++|..+ ++.+ +.+..+++.
T Consensus 25 ~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~ 60 (230)
T PRK08533 25 SLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVST 60 (230)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 35669999999999997554 4443 455666654
No 341
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.94 E-value=3.3e-05 Score=57.59 Aligned_cols=53 Identities=19% Similarity=0.401 Sum_probs=39.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccc-----cCccCCcHHHHHHHHH
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTE-----AGYVGDDVESIIQKLL 94 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~-----~~~~g~~~~~~~~~~~ 94 (225)
.+.|+|.||+||||+|.++.+.+ |...+.+++..+.. -+|.-++-..+++.+.
T Consensus 25 viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eniRRva 85 (197)
T COG0529 25 VIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIENIRRVA 85 (197)
T ss_pred EEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHHHHHHHHHH
Confidence 45599999999999999999988 88899999987753 2444444444444443
No 342
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.94 E-value=1.3e-05 Score=62.82 Aligned_cols=37 Identities=30% Similarity=0.588 Sum_probs=32.3
Q ss_pred eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 28 LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 28 ~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
...+++.++..+.+.++ |.||+|+|||||++.|+..+
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 45678888888888777 99999999999999999876
No 343
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.93 E-value=1.3e-05 Score=60.24 Aligned_cols=31 Identities=35% Similarity=0.633 Sum_probs=27.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEec
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVD 72 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~ 72 (225)
+++|+|++|||||++++.+|+.++.+++..+
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 5789999999999999999999999887654
No 344
>PRK13946 shikimate kinase; Provisional
Probab=97.92 E-value=1.2e-05 Score=61.39 Aligned_cols=34 Identities=32% Similarity=0.641 Sum_probs=29.8
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEecc
Q psy5910 40 KSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDA 73 (225)
Q Consensus 40 ~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~ 73 (225)
...|+++|.+|||||++++.+|+.++.+++..+.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~ 43 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT 43 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence 3578899999999999999999999998876553
No 345
>PRK06547 hypothetical protein; Provisional
Probab=97.91 E-value=1.2e-05 Score=60.70 Aligned_cols=31 Identities=29% Similarity=0.522 Sum_probs=25.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEec
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVD 72 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~ 72 (225)
.|++.|+|||||||+|+.+++.++.+++..+
T Consensus 17 ~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 17 TVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 5568899999999999999999887765443
No 346
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.91 E-value=1.9e-05 Score=62.20 Aligned_cols=44 Identities=30% Similarity=0.594 Sum_probs=35.5
Q ss_pred eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
+...+.....+++.++...++.++ |.||+|+|||||++.|+...
T Consensus 6 l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 6 LNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 444444445678888888888777 99999999999999999876
No 347
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.91 E-value=8.4e-05 Score=57.92 Aligned_cols=24 Identities=33% Similarity=0.779 Sum_probs=21.8
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~ 64 (225)
-+.|+.|||||||||+.|-+|+.+
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~ 161 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLL 161 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHh
Confidence 468899999999999999999877
No 348
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.91 E-value=2e-05 Score=62.44 Aligned_cols=44 Identities=20% Similarity=0.568 Sum_probs=35.9
Q ss_pred eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
+...|.....+++.++....+.++ |.||+|+|||||++.++..+
T Consensus 6 l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 6 LTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 444455556778888888888777 99999999999999999876
No 349
>PF13245 AAA_19: Part of AAA domain
Probab=97.90 E-value=2.6e-05 Score=50.54 Aligned_cols=23 Identities=30% Similarity=0.664 Sum_probs=17.6
Q ss_pred cEEEEcCCCCcHH-HHHHHHHHHh
Q psy5910 42 NILLVGPTGCGKT-LMVKTLAKII 64 (225)
Q Consensus 42 ~vLl~Gp~GtGKT-~la~~ia~~~ 64 (225)
-+++.|||||||| ++++.++...
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 3446999999999 5666777665
No 350
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.90 E-value=1.4e-05 Score=60.91 Aligned_cols=29 Identities=21% Similarity=0.351 Sum_probs=24.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIV 70 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~ 70 (225)
-+++.||||+||||+|+.+++.++...+.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~~ 33 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHLS 33 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 46699999999999999999998765443
No 351
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.90 E-value=2.2e-05 Score=61.46 Aligned_cols=21 Identities=38% Similarity=0.544 Sum_probs=19.2
Q ss_pred CcEEEEcCCCCcHHHHHHHHH
Q psy5910 41 SNILLVGPTGCGKTLMVKTLA 61 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia 61 (225)
..+|+||+||+|||++|+.++
T Consensus 13 ~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 13 NMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred cEEEEECCCCCCHHHHHHhcC
Confidence 468899999999999999986
No 352
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.90 E-value=0.00013 Score=56.56 Aligned_cols=32 Identities=22% Similarity=0.299 Sum_probs=23.8
Q ss_pred ecccceeeeCCc-EEEEcCCCCcHHHHHHHHHH
Q psy5910 31 LKSKNIYLEKSN-ILLVGPTGCGKTLMVKTLAK 62 (225)
Q Consensus 31 ~~~~~~~~~~~~-vLl~Gp~GtGKT~la~~ia~ 62 (225)
..+.++..+.+. ++|+||+|+|||++.+.++.
T Consensus 19 ~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 19 PNDIYLTRGSSRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred EeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 444555555534 55999999999999998874
No 353
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.90 E-value=0.00016 Score=54.41 Aligned_cols=33 Identities=21% Similarity=0.369 Sum_probs=28.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccC
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDAT 74 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~ 74 (225)
.+++.|+||+|||++|..++..++.+++++...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~ 35 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATA 35 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCC
Confidence 478999999999999999999888777666543
No 354
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.89 E-value=1.4e-05 Score=63.01 Aligned_cols=30 Identities=33% Similarity=0.486 Sum_probs=26.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVV 71 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~ 71 (225)
.+++.||||+||||+|+.+|+.++.+++..
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g~~~is~ 37 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKENLKHINM 37 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 588999999999999999999998766554
No 355
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.89 E-value=3.1e-05 Score=60.44 Aligned_cols=45 Identities=22% Similarity=0.588 Sum_probs=37.9
Q ss_pred eEecc-cceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910 21 VYNHY-KRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 21 l~~~~-~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~ 65 (225)
+...| .+...++++++..+.+.++ ++||||+|||||.|++....+
T Consensus 9 l~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d 55 (258)
T COG3638 9 LSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD 55 (258)
T ss_pred eeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC
Confidence 34445 6778889999999998877 999999999999999998663
No 356
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.89 E-value=1.8e-05 Score=61.43 Aligned_cols=43 Identities=19% Similarity=0.482 Sum_probs=34.8
Q ss_pred EecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 22 YNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
...+.....+++.++..+.+.++ |.||+|+|||||++.++..+
T Consensus 5 ~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 5 SKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 33444445778888888888776 99999999999999999876
No 357
>KOG0055|consensus
Probab=97.89 E-value=0.00017 Score=68.19 Aligned_cols=57 Identities=25% Similarity=0.493 Sum_probs=40.4
Q ss_pred eeEecccce---EeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhCCC--eEEeccCcc
Q psy5910 20 GVYNHYKRL---FLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIINVP--IIVVDATSF 76 (225)
Q Consensus 20 ~l~~~~~~~---~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~~~--~~~~~~~~~ 76 (225)
.+++.|... +.+++.++..+.+... |+||+||||||+...+.+.++.. -+.+++.++
T Consensus 355 nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di 417 (1228)
T KOG0055|consen 355 NVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDI 417 (1228)
T ss_pred EEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccc
Confidence 445555433 4467888888887666 99999999999999999988432 344444433
No 358
>PRK02496 adk adenylate kinase; Provisional
Probab=97.89 E-value=1.4e-05 Score=60.91 Aligned_cols=30 Identities=30% Similarity=0.631 Sum_probs=26.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVV 71 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~ 71 (225)
.+++.||||+||||+|+.|++.++.+.+..
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 478999999999999999999988765543
No 359
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.89 E-value=0.00012 Score=63.19 Aligned_cols=37 Identities=32% Similarity=0.532 Sum_probs=28.9
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcc
Q psy5910 40 KSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSF 76 (225)
Q Consensus 40 ~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~ 76 (225)
+..++++|++|+||||++..+|..+ +..+..+++...
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 4467799999999999999998877 556666666544
No 360
>PRK14528 adenylate kinase; Provisional
Probab=97.89 E-value=1.6e-05 Score=60.85 Aligned_cols=30 Identities=37% Similarity=0.706 Sum_probs=26.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVV 71 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~ 71 (225)
.+++.||||+||||+|+.+++.++.+.+..
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 588999999999999999999998776543
No 361
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.88 E-value=2.3e-05 Score=61.02 Aligned_cols=37 Identities=24% Similarity=0.547 Sum_probs=32.0
Q ss_pred eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 28 LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 28 ~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
...+++.++..+.+.++ |.||+|+|||||++.|+...
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678888888888777 99999999999999999865
No 362
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.88 E-value=2.6e-05 Score=60.70 Aligned_cols=44 Identities=34% Similarity=0.610 Sum_probs=34.7
Q ss_pred eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
+...+.....+++.++...++.++ |.||+|+|||||++.|+...
T Consensus 6 l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 6 VTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 333444445677888888888776 99999999999999999765
No 363
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.87 E-value=2.5e-05 Score=61.31 Aligned_cols=44 Identities=25% Similarity=0.486 Sum_probs=35.1
Q ss_pred eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
+...+.....+++.++...++.++ |.||+|+|||||++.++...
T Consensus 6 l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 6 LNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred EEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 344444455678888888888777 99999999999999999765
No 364
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.86 E-value=2.7e-05 Score=61.90 Aligned_cols=44 Identities=23% Similarity=0.542 Sum_probs=35.4
Q ss_pred eEecccc-eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 21 VYNHYKR-LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 21 l~~~~~~-~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
+...|.. ...+++.++...++.++ |.||+|+|||||++.|+..+
T Consensus 6 l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 6 LSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4444443 45778888888888777 99999999999999999765
No 365
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=97.86 E-value=0.00013 Score=65.31 Aligned_cols=49 Identities=27% Similarity=0.453 Sum_probs=40.2
Q ss_pred eeeeEeccc-ceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhCC
Q psy5910 18 SVGVYNHYK-RLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIINV 66 (225)
Q Consensus 18 ~~~l~~~~~-~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~~ 66 (225)
.+.+.+.|. .....++.++..+++..+ ++||+|+||||+++.+.+.+..
T Consensus 331 f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~ 381 (567)
T COG1132 331 FENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP 381 (567)
T ss_pred EEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 445666676 456788899999888777 9999999999999999998843
No 366
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.86 E-value=3.2e-05 Score=60.68 Aligned_cols=37 Identities=30% Similarity=0.690 Sum_probs=32.2
Q ss_pred eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 28 LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 28 ~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
...+++.++..+.+.++ |.||+|+|||||++.++...
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45778888888888776 99999999999999999875
No 367
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.86 E-value=2.8e-05 Score=61.80 Aligned_cols=45 Identities=22% Similarity=0.518 Sum_probs=36.6
Q ss_pred eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
.+...|.....+++.++....+.++ |.||+|+|||||++.++...
T Consensus 7 ~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 7 NVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred eEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444555556788888988888777 99999999999999999875
No 368
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.85 E-value=2.3e-05 Score=62.40 Aligned_cols=44 Identities=20% Similarity=0.561 Sum_probs=35.0
Q ss_pred eEeccc-ceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 21 VYNHYK-RLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 21 l~~~~~-~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
+...|. ....+++.++..+++.++ |.||+|+|||||+++|+...
T Consensus 7 l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 7 LSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred eeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 344444 445678888888888777 99999999999999999765
No 369
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.85 E-value=0.00018 Score=57.55 Aligned_cols=34 Identities=35% Similarity=0.624 Sum_probs=27.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcc
Q psy5910 43 ILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSF 76 (225)
Q Consensus 43 vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~ 76 (225)
|+|.|+||+||||+|+.+++.+ +.++..++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 5799999999999999999987 455666665444
No 370
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.85 E-value=3.1e-05 Score=60.35 Aligned_cols=44 Identities=18% Similarity=0.563 Sum_probs=35.4
Q ss_pred eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
+...+.....+++.++...++.++ |.||+|+|||||.+.++..+
T Consensus 6 l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 6 LHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred EEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 444444455678888888887776 99999999999999999765
No 371
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.85 E-value=3.1e-05 Score=61.25 Aligned_cols=45 Identities=20% Similarity=0.484 Sum_probs=36.4
Q ss_pred eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
.+...|.....+++.++...++.++ |.||+|+|||||++.++..+
T Consensus 5 ~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 5 NLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred EEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444555556788888988888777 99999999999999999765
No 372
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.85 E-value=5.5e-05 Score=63.95 Aligned_cols=32 Identities=28% Similarity=0.426 Sum_probs=24.6
Q ss_pred cceeeeCC-cEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910 34 KNIYLEKS-NILLVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 34 ~~~~~~~~-~vLl~Gp~GtGKT~la~~ia~~~~ 65 (225)
..+...++ .++++||||||||++++.+++.+.
T Consensus 161 ~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 161 LFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred eEEEeCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 33444443 467999999999999999999864
No 373
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=97.85 E-value=3e-05 Score=61.75 Aligned_cols=44 Identities=30% Similarity=0.450 Sum_probs=35.6
Q ss_pred eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHH
Q psy5910 20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~ 63 (225)
.+...|.....+++.++..+++.++ |.||+|+|||||++.|+..
T Consensus 5 ~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 5 DLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred eEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3444455556788889999888766 9999999999999999986
No 374
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.84 E-value=1.6e-05 Score=59.01 Aligned_cols=30 Identities=30% Similarity=0.466 Sum_probs=26.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEec
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVD 72 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~ 72 (225)
.++++|.|||||||+|+.++ .++..++.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 47799999999999999999 8888877765
No 375
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.84 E-value=0.00016 Score=58.71 Aligned_cols=36 Identities=19% Similarity=0.489 Sum_probs=32.4
Q ss_pred eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHH
Q psy5910 28 LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 28 ~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~ 63 (225)
...+++.+++.+.+.++ ++|.||.|||||.|.+-..
T Consensus 19 ~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~L 55 (339)
T COG1135 19 VTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLL 55 (339)
T ss_pred eeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhcc
Confidence 56788999999999999 9999999999999988743
No 376
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.84 E-value=3.4e-05 Score=58.53 Aligned_cols=44 Identities=27% Similarity=0.582 Sum_probs=35.1
Q ss_pred eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
+...+.....+++.++...++.++ |.||+|+|||||++.++..+
T Consensus 6 l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 6 VSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred EEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 333444445678888888888777 99999999999999999765
No 377
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.84 E-value=3.1e-05 Score=61.17 Aligned_cols=44 Identities=25% Similarity=0.488 Sum_probs=35.6
Q ss_pred eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
+...+.....+++.++...++.++ |.||+|+|||||++.++..+
T Consensus 6 l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 6 LNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred EEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 444455456778888888888766 99999999999999999776
No 378
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=97.84 E-value=0.00033 Score=53.60 Aligned_cols=35 Identities=26% Similarity=0.544 Sum_probs=31.3
Q ss_pred eecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 30 LLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 30 ~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
.+.+.++....+.|. +.||.|.||||+.|.||..+
T Consensus 17 AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL 52 (245)
T COG4555 17 AVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLL 52 (245)
T ss_pred hhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhc
Confidence 456778888888898 99999999999999999988
No 379
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.83 E-value=2.8e-05 Score=61.32 Aligned_cols=45 Identities=27% Similarity=0.474 Sum_probs=36.5
Q ss_pred eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
.+...+.....+++.++..+++.++ |.||+|+|||||++.|+...
T Consensus 12 ~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 12 NVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred ccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3444455556788889999988777 99999999999999999865
No 380
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.83 E-value=3.2e-05 Score=60.30 Aligned_cols=44 Identities=27% Similarity=0.590 Sum_probs=35.4
Q ss_pred eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
+...+.....+++.++...++.++ |.||+|+|||||++.++..+
T Consensus 6 l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 6 VTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred eEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 444444455678888888887766 99999999999999999875
No 381
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.83 E-value=0.00021 Score=55.25 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=19.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~ 63 (225)
-++|+||+|+||||++|.|+..
T Consensus 27 ~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 27 GILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred EEEEECCCCCChHHHHHHHHHH
Confidence 4559999999999999999853
No 382
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.83 E-value=2.9e-05 Score=62.19 Aligned_cols=44 Identities=23% Similarity=0.554 Sum_probs=35.4
Q ss_pred eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
+...+.....+++.++..+++.++ |.||+|+|||||++.|+...
T Consensus 9 l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 9 LKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred eEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 344444455778888988888776 99999999999999999875
No 383
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.83 E-value=2e-05 Score=61.47 Aligned_cols=28 Identities=36% Similarity=0.656 Sum_probs=24.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q psy5910 43 ILLVGPTGCGKTLMVKTLAKIINVPIIV 70 (225)
Q Consensus 43 vLl~Gp~GtGKT~la~~ia~~~~~~~~~ 70 (225)
++++||||+||||+|+.+++.++.+.+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is 29 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS 29 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence 7899999999999999999998876554
No 384
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.83 E-value=3.6e-05 Score=48.90 Aligned_cols=31 Identities=32% Similarity=0.616 Sum_probs=23.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh-CCCeEEecc
Q psy5910 43 ILLVGPTGCGKTLMVKTLAKII-NVPIIVVDA 73 (225)
Q Consensus 43 vLl~Gp~GtGKT~la~~ia~~~-~~~~~~~~~ 73 (225)
+.+.|+||+|||++++.+++.+ +.++..++.
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~~ 33 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVLDE 33 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEEeE
Confidence 5689999999999999999986 234444433
No 385
>KOG1051|consensus
Probab=97.83 E-value=9.4e-05 Score=68.15 Aligned_cols=130 Identities=22% Similarity=0.260 Sum_probs=77.6
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHh----------CCCeEEeccCcccc-cCccCCcHHHHHHHHHHhcchhhhhhCCCEE
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKII----------NVPIIVVDATSFTE-AGYVGDDVESIIQKLLHECDYDVELAEQSII 109 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~----------~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl 109 (225)
++-+|+|.||+|||.++.-+++.. +..++.++...+.. ..+.| +++..+..+.+.... ...+.|+
T Consensus 209 ~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rg-e~E~rlk~l~k~v~~---~~~gvIL 284 (898)
T KOG1051|consen 209 NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRG-EFEERLKELLKEVES---GGGGVIL 284 (898)
T ss_pred CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccch-HHHHHHHHHHHHHhc---CCCcEEE
Confidence 577899999999999999998876 23355555544432 22333 345566666554310 3467799
Q ss_pred EEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecC-cceeeccCccccHHHHHH
Q psy5910 110 YIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTT-NILFIAGGAFSGIENFII 188 (225)
Q Consensus 110 ~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~tt-n~~~i~~~~~~~l~~al~ 188 (225)
|+||++-+...... .....+.+.|-..|.... +.+|+|| +.-+ ...-+-+|++-
T Consensus 285 figelh~lvg~g~~-----~~~~d~~nlLkp~L~rg~-----------------l~~IGatT~e~Y---~k~iekdPalE 339 (898)
T KOG1051|consen 285 FLGELHWLVGSGSN-----YGAIDAANLLKPLLARGG-----------------LWCIGATTLETY---RKCIEKDPALE 339 (898)
T ss_pred EecceeeeecCCCc-----chHHHHHHhhHHHHhcCC-----------------eEEEecccHHHH---HHHHhhCcchh
Confidence 99999999866432 113335555555655322 4455544 3211 00124578899
Q ss_pred hhcccc-ccccc
Q psy5910 189 NRINQE-TNFLE 199 (225)
Q Consensus 189 ~Rf~~~-i~~~~ 199 (225)
+||+.. +..|.
T Consensus 340 rrw~l~~v~~pS 351 (898)
T KOG1051|consen 340 RRWQLVLVPIPS 351 (898)
T ss_pred hCcceeEeccCc
Confidence 999766 44444
No 386
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.83 E-value=3.2e-05 Score=62.16 Aligned_cols=44 Identities=34% Similarity=0.705 Sum_probs=35.4
Q ss_pred eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
+...+.....+++.++..+++.++ |.||+|+|||||++.|+...
T Consensus 7 l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 7 LYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred EEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 444444445678888888888777 99999999999999999875
No 387
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.83 E-value=0.00011 Score=56.93 Aligned_cols=28 Identities=36% Similarity=0.615 Sum_probs=22.5
Q ss_pred cceeeeCC--cEEEEcCCCCcHHHHHHHHH
Q psy5910 34 KNIYLEKS--NILLVGPTGCGKTLMVKTLA 61 (225)
Q Consensus 34 ~~~~~~~~--~vLl~Gp~GtGKT~la~~ia 61 (225)
.++....+ .++|+||.|+||||+.+.++
T Consensus 20 ~~~~i~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 20 LDIQLGENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred ceEEECCCceEEEEECCCCCChHHHHHHHH
Confidence 44555554 47799999999999999988
No 388
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=97.83 E-value=9.7e-05 Score=57.30 Aligned_cols=127 Identities=16% Similarity=0.234 Sum_probs=66.7
Q ss_pred EEcCCCCcHHHHHHHHHHHhCCCeEE-eccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccc
Q psy5910 45 LVGPTGCGKTLMVKTLAKIINVPIIV-VDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDV 123 (225)
Q Consensus 45 l~Gp~GtGKT~la~~ia~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~ 123 (225)
+.|+||+||||+|+.|+..++.+.+. +.-.+. |.... . . .......+-.|..+++...
T Consensus 13 IaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~Y----Yk~~~--~---~---------~~~~~~~~n~d~p~A~D~d--- 71 (218)
T COG0572 13 IAGGSGSGKTTVAKELSEQLGVEKVVVISLDDY----YKDQS--H---L---------PFEERNKINYDHPEAFDLD--- 71 (218)
T ss_pred EeCCCCCCHHHHHHHHHHHhCcCcceEeecccc----ccchh--h---c---------CHhhcCCcCccChhhhcHH---
Confidence 89999999999999999999865222 222222 22111 0 0 0112233333444443322
Q ss_pred cCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhccccccccccccc
Q psy5910 124 VSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNN 203 (225)
Q Consensus 124 ~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~ 203 (225)
-+.+.|..++.+.....|........... .... ...+.++|.-|-.---|+.+++.++.+|....+...
T Consensus 72 ---------Ll~~~L~~L~~g~~v~~P~yd~~~~~r~~-~~i~-~~p~~VVIvEGi~~l~d~~lr~~~d~kIfvdtd~D~ 140 (218)
T COG0572 72 ---------LLIEHLKDLKQGKPVDLPVYDYKTHTREP-ETIK-VEPNDVVIVEGILLLYDERLRDLMDLKIFVDTDADV 140 (218)
T ss_pred ---------HHHHHHHHHHcCCcccccccchhcccccC-Cccc-cCCCcEEEEecccccccHHHHhhcCEEEEEeCCccH
Confidence 14556666777666555544332222221 0111 222333333332324467888899999888777654
No 389
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.82 E-value=2.5e-05 Score=53.89 Aligned_cols=31 Identities=26% Similarity=0.381 Sum_probs=23.8
Q ss_pred ecccceeeeCC-cEEEEcCCCCcHHHHHHHHH
Q psy5910 31 LKSKNIYLEKS-NILLVGPTGCGKTLMVKTLA 61 (225)
Q Consensus 31 ~~~~~~~~~~~-~vLl~Gp~GtGKT~la~~ia 61 (225)
+++.++....+ .+.|.||||||||||++.+.
T Consensus 5 L~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 5 LHGVLVDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 34455556654 45699999999999999987
No 390
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.82 E-value=3.8e-05 Score=59.87 Aligned_cols=44 Identities=27% Similarity=0.446 Sum_probs=34.3
Q ss_pred eEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910 21 VYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 21 l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~ 64 (225)
+...+.....+++.++....+.+.|.||+|+|||||++.++..+
T Consensus 6 ~~~~~~~~~~l~~vs~~i~~g~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 6 LTKRYGKKRALDGVSLTLGPGMYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred EEEEECCEEEEcceeEEEcCCcEEEECCCCCCHHHHHHHHhCCC
Confidence 34444445577888888888744499999999999999999765
No 391
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.82 E-value=0.00033 Score=59.49 Aligned_cols=35 Identities=37% Similarity=0.616 Sum_probs=26.0
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHh-------CCCeEEeccCc
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKII-------NVPIIVVDATS 75 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~-------~~~~~~~~~~~ 75 (225)
..++|+||+|+||||++..+|..+ +..+..+++..
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt 216 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDN 216 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccC
Confidence 467799999999999999888765 23455555543
No 392
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.82 E-value=2.9e-05 Score=62.25 Aligned_cols=45 Identities=22% Similarity=0.654 Sum_probs=36.6
Q ss_pred eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
.+...|.....+++.++...++.++ |.||+|+|||||++.++..+
T Consensus 9 ~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 9 NLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLL 54 (253)
T ss_pred eEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3444455556788889999888777 99999999999999999875
No 393
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.82 E-value=2.3e-05 Score=62.01 Aligned_cols=36 Identities=22% Similarity=0.519 Sum_probs=31.9
Q ss_pred EeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 29 FLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 29 ~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
..+++.++..+++.++ |.||+|+|||||++.|+..+
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5678888888888777 99999999999999999876
No 394
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=97.82 E-value=3.3e-05 Score=64.92 Aligned_cols=45 Identities=22% Similarity=0.589 Sum_probs=36.6
Q ss_pred eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
.+...|.....+++.++....+.++ |.||+|||||||.+.|+...
T Consensus 11 ~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~ 56 (351)
T PRK11432 11 NITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLE 56 (351)
T ss_pred eEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCC
Confidence 3445555556678888989888777 99999999999999999876
No 395
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.82 E-value=3.4e-05 Score=60.51 Aligned_cols=44 Identities=27% Similarity=0.432 Sum_probs=35.0
Q ss_pred eEecccc--eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 21 VYNHYKR--LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 21 l~~~~~~--~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
+...+.. ...+++.++...++.++ |.||+|+|||||++.++...
T Consensus 6 l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 6 LTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred eEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3344443 45778888888888766 99999999999999999865
No 396
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.82 E-value=0.00018 Score=60.87 Aligned_cols=75 Identities=21% Similarity=0.391 Sum_probs=43.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccc--------cCccCCcH----HHHHHHHHHhcchhhhhhCC
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTE--------AGYVGDDV----ESIIQKLLHECDYDVELAEQ 106 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~--------~~~~g~~~----~~~~~~~~~~~~~~~~~~~~ 106 (225)
-++++|+||+|||+++..++... +.++++++...... -++..... ...+..+.+. +....+
T Consensus 84 lvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~----i~~~~~ 159 (372)
T cd01121 84 VILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILAS----IEELKP 159 (372)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHH----HHhcCC
Confidence 45699999999999999888655 34677776543211 00000000 0011112111 133478
Q ss_pred CEEEEcchhhhccc
Q psy5910 107 SIIYIDEIDKISKK 120 (225)
Q Consensus 107 ~vl~iDEid~l~~~ 120 (225)
.+|+||++..+...
T Consensus 160 ~lVVIDSIq~l~~~ 173 (372)
T cd01121 160 DLVIIDSIQTVYSS 173 (372)
T ss_pred cEEEEcchHHhhcc
Confidence 89999999998643
No 397
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.82 E-value=3.9e-05 Score=59.35 Aligned_cols=44 Identities=30% Similarity=0.464 Sum_probs=35.7
Q ss_pred eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
+...+.....+++.++...++.++ |.||+|+|||||++.|+...
T Consensus 7 l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 7 LDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred EEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 444455556788888988888777 99999999999999999865
No 398
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.81 E-value=3.6e-05 Score=61.71 Aligned_cols=44 Identities=18% Similarity=0.607 Sum_probs=36.0
Q ss_pred eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
+...|.....+++.++..+++.++ |.||+|+|||||++.|+..+
T Consensus 10 l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 10 LNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred EEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 444454456788889998888777 99999999999999999875
No 399
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.81 E-value=1.9e-05 Score=56.16 Aligned_cols=22 Identities=41% Similarity=0.560 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q psy5910 43 ILLVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 43 vLl~Gp~GtGKT~la~~ia~~~ 64 (225)
|+|.|+||+||||+|+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999986
No 400
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.81 E-value=2.7e-05 Score=60.78 Aligned_cols=42 Identities=24% Similarity=0.507 Sum_probs=33.9
Q ss_pred ecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 23 NHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
..|.....+++.++..+.+.++ |.||+|+|||||++.++...
T Consensus 7 ~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 7 VSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred eEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3344445678888888888776 99999999999999999765
No 401
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.81 E-value=2.6e-05 Score=60.87 Aligned_cols=37 Identities=32% Similarity=0.567 Sum_probs=32.0
Q ss_pred eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 28 LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 28 ~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
...+++.++....+.++ |.||+|+|||||++.|+..+
T Consensus 15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45678888888888777 99999999999999999875
No 402
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.81 E-value=3.3e-05 Score=61.23 Aligned_cols=44 Identities=23% Similarity=0.489 Sum_probs=35.2
Q ss_pred eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
+...|.....+++.++...++.++ |.||+|+|||||++.++..+
T Consensus 6 l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 6 LTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred eEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 344444455778888888888776 99999999999999999765
No 403
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=97.81 E-value=3.5e-05 Score=64.89 Aligned_cols=45 Identities=27% Similarity=0.625 Sum_probs=36.5
Q ss_pred eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
.+...|.....+++.++..+.+.++ |.||+|||||||.+.|+...
T Consensus 9 ~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~ 54 (353)
T TIGR03265 9 NIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLE 54 (353)
T ss_pred EEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 4455555556678888888887777 99999999999999999876
No 404
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.81 E-value=5.2e-05 Score=58.52 Aligned_cols=95 Identities=24% Similarity=0.346 Sum_probs=51.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhccccc
Q psy5910 43 ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTD 122 (225)
Q Consensus 43 vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~ 122 (225)
++|.|+-|+|||++.+.|+.. ++ .+. +.. ....+ ....+ ....++.+||++.+...
T Consensus 55 lvl~G~QG~GKStf~~~L~~~----~~-~d~--~~~--~~~kd---~~~~l----------~~~~iveldEl~~~~k~-- 110 (198)
T PF05272_consen 55 LVLVGKQGIGKSTFFRKLGPE----YF-SDS--IND--FDDKD---FLEQL----------QGKWIVELDELDGLSKK-- 110 (198)
T ss_pred eeEecCCcccHHHHHHHHhHH----hc-cCc--ccc--CCCcH---HHHHH----------HHhHheeHHHHhhcchh--
Confidence 449999999999999999654 11 111 110 11111 11122 34469999999998844
Q ss_pred ccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcc
Q psy5910 123 VVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNI 172 (225)
Q Consensus 123 ~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~ 172 (225)
-.+.|-.++-..........++......-...+++|||.
T Consensus 111 -----------~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~ 149 (198)
T PF05272_consen 111 -----------DVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTND 149 (198)
T ss_pred -----------hHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCC
Confidence 345666666543333322222211111112567888887
No 405
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.81 E-value=3.7e-05 Score=59.97 Aligned_cols=44 Identities=30% Similarity=0.613 Sum_probs=35.4
Q ss_pred eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
+...|.....+++.++..+.+.++ |.||+|+|||||++.++...
T Consensus 6 l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 6 LSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred eEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 344444455778888988888777 99999999999999999865
No 406
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=97.81 E-value=2.8e-05 Score=64.78 Aligned_cols=38 Identities=16% Similarity=0.407 Sum_probs=34.1
Q ss_pred eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910 28 LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 28 ~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~ 65 (225)
...+++.++....+.++ |+||+|||||||+++|+..+.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~ 58 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLID 58 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 45788999999999888 999999999999999998764
No 407
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.81 E-value=4.9e-05 Score=58.73 Aligned_cols=25 Identities=36% Similarity=0.676 Sum_probs=21.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~~ 65 (225)
+-+++.||+|+||||++++++..+.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3567999999999999999888774
No 408
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.80 E-value=4.3e-05 Score=59.43 Aligned_cols=44 Identities=25% Similarity=0.413 Sum_probs=35.4
Q ss_pred eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
+...+.....+++.++..+++.++ |.||+|+|||||++.++...
T Consensus 8 l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 8 LACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred EEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344444455678888888888777 99999999999999999875
No 409
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.80 E-value=4.1e-05 Score=60.07 Aligned_cols=44 Identities=25% Similarity=0.568 Sum_probs=35.2
Q ss_pred eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
+...+.....+++.++....+.++ |.||+|+|||||.+.|+..+
T Consensus 6 ~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 6 LVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred EEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344444455778888888887776 99999999999999999865
No 410
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.80 E-value=2.9e-05 Score=60.28 Aligned_cols=37 Identities=35% Similarity=0.511 Sum_probs=31.3
Q ss_pred eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 28 LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 28 ~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
...+++.++....+.++ |.||+|+|||||.+.++...
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44677778888887766 99999999999999999865
No 411
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.80 E-value=4.1e-05 Score=61.67 Aligned_cols=45 Identities=33% Similarity=0.696 Sum_probs=36.2
Q ss_pred eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
.+...|.....+++.++..+.+.++ |.||+|+|||||++.|+...
T Consensus 17 ~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 17 GMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred eEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3444555556788888988887766 99999999999999999865
No 412
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=97.80 E-value=3.6e-05 Score=62.03 Aligned_cols=45 Identities=27% Similarity=0.665 Sum_probs=36.6
Q ss_pred eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
.+...|.....+++.++..+++.++ |.||+|+|||||++.|+...
T Consensus 18 ~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 18 NLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred EEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4444555556788889999888777 99999999999999999765
No 413
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.80 E-value=2.6e-05 Score=61.01 Aligned_cols=29 Identities=34% Similarity=0.645 Sum_probs=25.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIV 70 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~ 70 (225)
.|+++||||+||||+|+.+|+.++.+.+.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is 30 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIS 30 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 47899999999999999999999875554
No 414
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.80 E-value=3.6e-05 Score=59.73 Aligned_cols=44 Identities=23% Similarity=0.439 Sum_probs=35.8
Q ss_pred eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
+...+.....+.+.++..+++.++ |.||+|+|||||++.|+..+
T Consensus 7 l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 7 LACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred EEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 344444556788889999888777 99999999999999999875
No 415
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.80 E-value=3.1e-05 Score=61.99 Aligned_cols=44 Identities=16% Similarity=0.495 Sum_probs=35.7
Q ss_pred eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
+...+.....+++.++..+++.++ |.||+|+|||||++.|+..+
T Consensus 9 l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 9 LVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred eEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344444456788889998888777 99999999999999999765
No 416
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.80 E-value=0.00015 Score=55.60 Aligned_cols=25 Identities=44% Similarity=0.566 Sum_probs=22.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCC
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINV 66 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~ 66 (225)
-++|+|+||+||||+|+.+++.+..
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~ 27 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQ 27 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHH
Confidence 4679999999999999999999843
No 417
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=97.80 E-value=3.8e-05 Score=61.58 Aligned_cols=44 Identities=25% Similarity=0.498 Sum_probs=35.7
Q ss_pred eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
+...+.....+++.++...++.++ |.||+|+|||||++.|+...
T Consensus 6 l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (252)
T TIGR03005 6 VTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLE 50 (252)
T ss_pred EEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 444444456778888888888777 99999999999999999865
No 418
>PRK06696 uridine kinase; Validated
Probab=97.79 E-value=2.4e-05 Score=61.62 Aligned_cols=35 Identities=31% Similarity=0.473 Sum_probs=28.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcc
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSF 76 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~ 76 (225)
-|.+.|+||+||||+|+.|++.+ +.+++.+...++
T Consensus 24 iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf 61 (223)
T PRK06696 24 RVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDF 61 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccc
Confidence 34499999999999999999998 566666665554
No 419
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.79 E-value=4.1e-05 Score=60.75 Aligned_cols=44 Identities=20% Similarity=0.404 Sum_probs=35.1
Q ss_pred eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
+...+.....+++.++...++.++ |.||+|+|||||++.|+...
T Consensus 7 l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 7 LSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred eEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 333444455678888888888777 99999999999999999765
No 420
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.79 E-value=4.5e-05 Score=59.29 Aligned_cols=44 Identities=27% Similarity=0.529 Sum_probs=35.1
Q ss_pred eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
+...|.....+++.++..+.+.++ +.||+|+|||||++.++...
T Consensus 6 l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 6 LTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred EEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 344444456778888888888776 99999999999999999765
No 421
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.79 E-value=3.3e-05 Score=60.29 Aligned_cols=44 Identities=32% Similarity=0.495 Sum_probs=34.5
Q ss_pred eEecccc-eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 21 VYNHYKR-LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 21 l~~~~~~-~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
+...+.. ...+++.++...++.++ |.||+|+|||||++.++..+
T Consensus 6 l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 6 VTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3444432 35677888888888766 99999999999999999875
No 422
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.78 E-value=4.9e-05 Score=57.40 Aligned_cols=41 Identities=32% Similarity=0.621 Sum_probs=33.3
Q ss_pred cccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 24 HYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
.+.....+++.++..+++.++ +.||+|+|||||++.++...
T Consensus 9 ~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 9 RYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred EECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 333345677888888887666 99999999999999999865
No 423
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.78 E-value=3.1e-05 Score=62.35 Aligned_cols=46 Identities=24% Similarity=0.501 Sum_probs=36.8
Q ss_pred eeeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 19 VGVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 19 ~~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
+.+...|.....+++.++...++.++ |.||+|+|||||++.|+..+
T Consensus 16 ~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 16 NAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred EEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34455555556778888988887666 99999999999999999876
No 424
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=97.78 E-value=4.6e-05 Score=61.68 Aligned_cols=46 Identities=22% Similarity=0.515 Sum_probs=37.3
Q ss_pred eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910 20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~ 65 (225)
.+...+.....+++.++..+++.++ |.||+|+|||||++.|+....
T Consensus 24 nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 70 (267)
T PRK14235 24 DVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMND 70 (267)
T ss_pred eEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 4455555556788899999888777 999999999999999998753
No 425
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.78 E-value=3e-05 Score=55.77 Aligned_cols=27 Identities=33% Similarity=0.543 Sum_probs=23.5
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKIINVP 67 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~ 67 (225)
..++|.|+.|+||||+++.+++.++..
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 356699999999999999999998754
No 426
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.77 E-value=4.4e-05 Score=60.79 Aligned_cols=44 Identities=23% Similarity=0.386 Sum_probs=35.3
Q ss_pred eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
+...|.....+++.++...++.++ |.||+|+|||||++.|+...
T Consensus 8 l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 8 INCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred eEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 444454556778888888887766 99999999999999999775
No 427
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=97.77 E-value=4e-05 Score=64.57 Aligned_cols=45 Identities=27% Similarity=0.630 Sum_probs=36.0
Q ss_pred eeEecc-cceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 20 GVYNHY-KRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 20 ~l~~~~-~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
.+...| .....+++.++..+.+.++ |.||+|||||||.+.|+...
T Consensus 8 ~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~ 54 (356)
T PRK11650 8 AVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLE 54 (356)
T ss_pred eEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCC
Confidence 344444 4445678888999888877 99999999999999999876
No 428
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.77 E-value=0.00017 Score=63.85 Aligned_cols=35 Identities=31% Similarity=0.565 Sum_probs=28.1
Q ss_pred eecccceeeeCC-cEEEEcCCCCcHHHHHHHHHHHh
Q psy5910 30 LLKSKNIYLEKS-NILLVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 30 ~~~~~~~~~~~~-~vLl~Gp~GtGKT~la~~ia~~~ 64 (225)
.+++.++..+++ .+++.||||||||+|.|+||...
T Consensus 408 ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLW 443 (604)
T COG4178 408 LLSELNFEVRPGERLLITGESGAGKTSLLRALAGLW 443 (604)
T ss_pred eeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 345566666654 57799999999999999999876
No 429
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.77 E-value=0.00053 Score=53.97 Aligned_cols=36 Identities=25% Similarity=0.348 Sum_probs=24.8
Q ss_pred eCCcEEEEcCCCCcHHHHHHHHHHHh----CCCeEEeccC
Q psy5910 39 EKSNILLVGPTGCGKTLMVKTLAKII----NVPIIVVDAT 74 (225)
Q Consensus 39 ~~~~vLl~Gp~GtGKT~la~~ia~~~----~~~~~~~~~~ 74 (225)
+...+|+.||||||||++|..++... +.++++++..
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~e 57 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFE 57 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEec
Confidence 33467799999999999988765332 6777777653
No 430
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.77 E-value=4.6e-05 Score=61.87 Aligned_cols=44 Identities=23% Similarity=0.406 Sum_probs=35.8
Q ss_pred eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
+...+.....+++.++....+.++ |.||+|+|||||++.|+..+
T Consensus 7 l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~ 51 (272)
T PRK13547 7 LHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDL 51 (272)
T ss_pred EEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 444455556788888888888766 99999999999999999865
No 431
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.77 E-value=0.00011 Score=55.33 Aligned_cols=42 Identities=24% Similarity=0.462 Sum_probs=29.0
Q ss_pred eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
+.+.|...... .+...+.+.+. +.||||+|||||...||...
T Consensus 7 V~~~y~~~~~~--fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~ 49 (231)
T COG3840 7 VRFSYGHLPMR--FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFE 49 (231)
T ss_pred eEEeeCcceEE--EEEeecCCcEEEEECCCCccHHHHHHHHHhcc
Confidence 34444443332 34445566666 99999999999999999765
No 432
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=97.77 E-value=4e-05 Score=61.28 Aligned_cols=44 Identities=30% Similarity=0.619 Sum_probs=35.8
Q ss_pred eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
+...+.....+++.++..+.+.++ |.||+|+|||||++.|+..+
T Consensus 7 l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 7 LNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred EEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 444444455778888988888777 99999999999999999776
No 433
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.77 E-value=4.7e-05 Score=60.67 Aligned_cols=44 Identities=30% Similarity=0.496 Sum_probs=35.3
Q ss_pred eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
+...+.....+++.++...++.++ |.||+|+|||||++.|+...
T Consensus 9 l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 9 VSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred EEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344444445678888888888776 99999999999999999875
No 434
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.77 E-value=2.2e-05 Score=64.93 Aligned_cols=34 Identities=29% Similarity=0.588 Sum_probs=30.0
Q ss_pred eCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEec
Q psy5910 39 EKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVD 72 (225)
Q Consensus 39 ~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~ 72 (225)
+...++|+|+||||||++++.+++.++.+++..+
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 3457889999999999999999999999998655
No 435
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=97.77 E-value=4.6e-05 Score=64.58 Aligned_cols=45 Identities=24% Similarity=0.609 Sum_probs=36.5
Q ss_pred eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
.+...|.....+++.++....+.++ |.||+|||||||.+.|+...
T Consensus 19 ~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~ 64 (375)
T PRK09452 19 GISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFE 64 (375)
T ss_pred EEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4455555555677888989888777 99999999999999999866
No 436
>PTZ00301 uridine kinase; Provisional
Probab=97.76 E-value=5.9e-05 Score=58.77 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q psy5910 43 ILLVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 43 vLl~Gp~GtGKT~la~~ia~~~ 64 (225)
|-+.|+||+||||+|+.|++.+
T Consensus 6 IgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 6 IGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred EEEECCCcCCHHHHHHHHHHHH
Confidence 3499999999999999998776
No 437
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.76 E-value=4.1e-05 Score=59.89 Aligned_cols=37 Identities=30% Similarity=0.557 Sum_probs=32.4
Q ss_pred eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 28 LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 28 ~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
...+++.++..+.+.++ +.||||||||||...++...
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 46778899999998888 99999999999999998655
No 438
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=97.76 E-value=5e-05 Score=60.89 Aligned_cols=44 Identities=25% Similarity=0.594 Sum_probs=35.0
Q ss_pred eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
+...|.....+++.++...++.++ |.||+|+|||||++.++...
T Consensus 12 l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14242 12 LSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMN 56 (253)
T ss_pred eEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 344444445778888888888766 99999999999999999764
No 439
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=97.76 E-value=4.9e-05 Score=60.45 Aligned_cols=44 Identities=20% Similarity=0.610 Sum_probs=35.4
Q ss_pred eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
+...+.....+++.++...++.++ |.||+|+|||||++.++..+
T Consensus 7 l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 7 VSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred EEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 344444455678888888888777 99999999999999999875
No 440
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.76 E-value=2.6e-05 Score=59.67 Aligned_cols=29 Identities=31% Similarity=0.576 Sum_probs=24.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIV 70 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~ 70 (225)
.++|+||+|+||||+++.++..++.++..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~~~~~~~ 32 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQREQTQLLV 32 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCeEEE
Confidence 56699999999999999999987665433
No 441
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.76 E-value=5.1e-05 Score=59.35 Aligned_cols=36 Identities=31% Similarity=0.473 Sum_probs=31.6
Q ss_pred EeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 29 FLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 29 ~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
..+++.++..+.+.++ |.||+|+|||||++.++..+
T Consensus 17 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 17 PALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4678888888888777 99999999999999999875
No 442
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.75 E-value=4.1e-05 Score=61.43 Aligned_cols=46 Identities=33% Similarity=0.635 Sum_probs=36.5
Q ss_pred eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910 20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~ 65 (225)
.+...+.....+++.++...++.++ |.||+|+|||||+++++..+.
T Consensus 12 ~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (254)
T PRK14273 12 NLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMND 58 (254)
T ss_pred eeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 3444444455778888998888777 999999999999999998653
No 443
>PLN02200 adenylate kinase family protein
Probab=97.75 E-value=3.2e-05 Score=61.34 Aligned_cols=33 Identities=15% Similarity=0.307 Sum_probs=26.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcc
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSF 76 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~ 76 (225)
.+++.|+|||||||+|+.+++.++.+ .++.+++
T Consensus 45 ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdl 77 (234)
T PLN02200 45 ITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDL 77 (234)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHH
Confidence 46699999999999999999998764 4555444
No 444
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.75 E-value=5.2e-05 Score=61.03 Aligned_cols=44 Identities=20% Similarity=0.450 Sum_probs=36.1
Q ss_pred eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
+...+.....+++.++...++.++ |.||+|+|||||++.|+...
T Consensus 8 l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 52 (258)
T PRK13548 8 LSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGEL 52 (258)
T ss_pred EEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 444555556788889998888777 99999999999999999875
No 445
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.75 E-value=5.7e-05 Score=58.02 Aligned_cols=36 Identities=31% Similarity=0.474 Sum_probs=30.7
Q ss_pred eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHH
Q psy5910 28 LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 28 ~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~ 63 (225)
...+++.++...++.++ |.||+|+|||||++.++..
T Consensus 20 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 20 RQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred eEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45678888888887776 9999999999999999964
No 446
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.75 E-value=5.1e-05 Score=60.47 Aligned_cols=44 Identities=32% Similarity=0.574 Sum_probs=35.2
Q ss_pred eEecccc-eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 21 VYNHYKR-LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 21 l~~~~~~-~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
+...|.. ...+++.++...++.++ |.||+|+|||||++.|+...
T Consensus 6 l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (242)
T cd03295 6 VTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLI 51 (242)
T ss_pred EEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4444444 45678888888888777 99999999999999999765
No 447
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.75 E-value=0.00013 Score=56.14 Aligned_cols=65 Identities=18% Similarity=0.166 Sum_probs=34.1
Q ss_pred CCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHH
Q psy5910 105 EQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIE 184 (225)
Q Consensus 105 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~ 184 (225)
.+++++|||+....+.+.... .... ...+.|.... +.. .-++.+|.. +..+|
T Consensus 79 ~~~liviDEa~~~~~~r~~~~------~~~~-~~~~~l~~hR------------h~g--~diiliTQ~-------~~~id 130 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKG------KKVP-EIIEFLAQHR------------HYG--WDIILITQS-------PSQID 130 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T-----------HHHHGGGGCC------------CTT---EEEEEES--------GGGB-
T ss_pred CCcEEEEECChhhcCCCcccc------ccch-HHHHHHHHhC------------cCC--cEEEEEeCC-------HHHHh
Confidence 689999999999998864411 0122 2335554321 222 555555555 77999
Q ss_pred HHHHhhccccccc
Q psy5910 185 NFIINRINQETNF 197 (225)
Q Consensus 185 ~al~~Rf~~~i~~ 197 (225)
..+++..+..+.+
T Consensus 131 ~~ir~lve~~~~~ 143 (193)
T PF05707_consen 131 KFIRDLVEYHYHC 143 (193)
T ss_dssp HHHHCCEEEEEEE
T ss_pred HHHHHHHheEEEE
Confidence 9998865554433
No 448
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.74 E-value=0.00011 Score=59.35 Aligned_cols=78 Identities=22% Similarity=0.323 Sum_probs=40.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCccc--ccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhh
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFT--EAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDK 116 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~ 116 (225)
-|+|+|-||+|||++|+.|+..+ +..+..++...+. ...|.....++..+..+...... .-....||++|....
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r-~ls~~~iVI~Dd~nY 81 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVER-ALSKDTIVILDDNNY 81 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHH-HHTT-SEEEE-S---
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHH-hhccCeEEEEeCCch
Confidence 36799999999999999999876 5666666654442 11243333344444444332111 123568999999887
Q ss_pred hccc
Q psy5910 117 ISKK 120 (225)
Q Consensus 117 l~~~ 120 (225)
+..-
T Consensus 82 iKg~ 85 (270)
T PF08433_consen 82 IKGM 85 (270)
T ss_dssp SHHH
T ss_pred HHHH
Confidence 6643
No 449
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.74 E-value=4.4e-05 Score=60.65 Aligned_cols=46 Identities=26% Similarity=0.509 Sum_probs=39.2
Q ss_pred eeeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 19 VGVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 19 ~~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
+.+...|.+.+.++++++..+.+.++ ++||.|+|||||.|++...+
T Consensus 8 ~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll 54 (254)
T COG1121 8 ENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLL 54 (254)
T ss_pred eeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44566676446899999999999888 99999999999999999865
No 450
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.74 E-value=5.7e-05 Score=58.71 Aligned_cols=37 Identities=27% Similarity=0.456 Sum_probs=27.9
Q ss_pred eCCc-EEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCc
Q psy5910 39 EKSN-ILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATS 75 (225)
Q Consensus 39 ~~~~-vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~ 75 (225)
+.+. ++++||||||||++|..++... +.+.++++...
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 3344 4499999999999998887544 55678887754
No 451
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.74 E-value=4.2e-05 Score=57.96 Aligned_cols=34 Identities=18% Similarity=0.316 Sum_probs=28.5
Q ss_pred EeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHH
Q psy5910 29 FLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAK 62 (225)
Q Consensus 29 ~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~ 62 (225)
..+++.++..+++.++ +.||+|||||||.+.+..
T Consensus 9 ~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 9 HNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred eeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 4466778888887776 999999999999999863
No 452
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.74 E-value=5.2e-05 Score=59.33 Aligned_cols=36 Identities=25% Similarity=0.515 Sum_probs=31.2
Q ss_pred EeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 29 FLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 29 ~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
..+++.++..+.+.++ |.||+|+|||||++.|+...
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 5678888888887666 99999999999999999875
No 453
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.74 E-value=0.00025 Score=57.42 Aligned_cols=25 Identities=40% Similarity=0.862 Sum_probs=22.8
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~~ 65 (225)
.++++.||+|+||||+.+.++..+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC
Confidence 4789999999999999999998873
No 454
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=97.74 E-value=5.2e-05 Score=63.98 Aligned_cols=45 Identities=27% Similarity=0.564 Sum_probs=36.5
Q ss_pred eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
.+...|.....+++.++....+.++ |.||+|||||||.+.|+...
T Consensus 10 ~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 55 (362)
T TIGR03258 10 HLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFV 55 (362)
T ss_pred EEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4445555556788888988888777 99999999999999999765
No 455
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=97.74 E-value=5.4e-05 Score=63.74 Aligned_cols=45 Identities=22% Similarity=0.524 Sum_probs=36.5
Q ss_pred eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
.+...|.....+++.++....+.++ |.||+|||||||.+.|+...
T Consensus 7 ~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~ 52 (353)
T PRK10851 7 NIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLE 52 (353)
T ss_pred EEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444455556778888988888777 99999999999999999876
No 456
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=97.74 E-value=5e-05 Score=61.12 Aligned_cols=45 Identities=24% Similarity=0.609 Sum_probs=35.9
Q ss_pred eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
.+...|.....+++.++...++.++ |.||+|+|||||++.++...
T Consensus 9 ~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 9 DLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred eEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 3444454456778888888887766 99999999999999999865
No 457
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=97.74 E-value=4.5e-05 Score=63.64 Aligned_cols=37 Identities=27% Similarity=0.501 Sum_probs=33.0
Q ss_pred eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 28 LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 28 ~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
...+++.++....+.++ |+|++|||||||+++|+...
T Consensus 20 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~ 57 (330)
T PRK15093 20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVT 57 (330)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccC
Confidence 45788889999988877 99999999999999999876
No 458
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.74 E-value=3e-05 Score=58.95 Aligned_cols=44 Identities=23% Similarity=0.553 Sum_probs=32.8
Q ss_pred eEecccceE--eecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 21 VYNHYKRLF--LLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 21 l~~~~~~~~--~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
+...|.+.. .+.+.++...++..+ +.|||||||||+.+.+|...
T Consensus 9 ~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~ 55 (259)
T COG4525 9 LSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFV 55 (259)
T ss_pred eEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCc
Confidence 344454443 566777777776655 89999999999999999765
No 459
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.74 E-value=6.3e-05 Score=57.17 Aligned_cols=43 Identities=30% Similarity=0.566 Sum_probs=33.8
Q ss_pred EecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 22 YNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
...|.....+++.++...++.++ |.||+|+|||||++.++...
T Consensus 6 ~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 6 SVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred EEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33344445677788888887666 99999999999999999876
No 460
>PRK04040 adenylate kinase; Provisional
Probab=97.74 E-value=3.5e-05 Score=59.02 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=21.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~ 65 (225)
.++++|+|||||||+++.+++.++
T Consensus 4 ~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 4 VVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHhc
Confidence 567999999999999999999983
No 461
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=97.73 E-value=5.5e-05 Score=64.09 Aligned_cols=45 Identities=27% Similarity=0.629 Sum_probs=36.2
Q ss_pred eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
.+...|.....+++.++..+.+.++ |.||+|||||||.+.|+...
T Consensus 8 ~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~ 53 (369)
T PRK11000 8 NVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (369)
T ss_pred EEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3444455555678888988888776 99999999999999999875
No 462
>PRK04182 cytidylate kinase; Provisional
Probab=97.73 E-value=3.5e-05 Score=58.23 Aligned_cols=29 Identities=31% Similarity=0.536 Sum_probs=25.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIV 70 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~ 70 (225)
.|++.|++||||||+|+.+++.++.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 36799999999999999999999887654
No 463
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=97.73 E-value=5.5e-05 Score=60.65 Aligned_cols=44 Identities=23% Similarity=0.316 Sum_probs=34.8
Q ss_pred eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
+...+.....+++.++..+.+.++ |.||+|+|||||++.++...
T Consensus 9 l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 9 LSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred eEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 344444445678888888887766 99999999999999999876
No 464
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.73 E-value=6.5e-05 Score=57.97 Aligned_cols=43 Identities=26% Similarity=0.449 Sum_probs=34.7
Q ss_pred EecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 22 YNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
...+.....+++.++...++.++ |.||+|+|||||.+.++...
T Consensus 7 ~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 7 ACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred EEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 33444455678888888888777 99999999999999999865
No 465
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=97.73 E-value=4.8e-05 Score=61.36 Aligned_cols=44 Identities=20% Similarity=0.567 Sum_probs=35.9
Q ss_pred eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
+...+.....+++.++...++.++ |.||+|+|||||++.|+..+
T Consensus 10 l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 54 (262)
T PRK09984 10 LAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLI 54 (262)
T ss_pred EEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 344445556788889998888777 99999999999999999876
No 466
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.73 E-value=5.3e-05 Score=60.29 Aligned_cols=44 Identities=25% Similarity=0.477 Sum_probs=35.3
Q ss_pred eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
+...+.....+++.++..+++.++ |.||+|+|||||++.|+..+
T Consensus 9 l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 9 LAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred cEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 333444455778888888888777 99999999999999999875
No 467
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=97.73 E-value=5.4e-05 Score=61.29 Aligned_cols=45 Identities=27% Similarity=0.515 Sum_probs=36.6
Q ss_pred eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
.+...+.....+++.++..+.+.++ |.||+|+|||||++.++...
T Consensus 25 nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 25 DLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred eEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 4444455556788889999888777 99999999999999999875
No 468
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=97.73 E-value=5.3e-05 Score=61.24 Aligned_cols=45 Identities=22% Similarity=0.336 Sum_probs=36.4
Q ss_pred eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
.+...+.....+++.++....+.++ |.||+|+|||||++.|+...
T Consensus 16 ~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T PRK10575 16 NVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQ 61 (265)
T ss_pred eEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3444454456788889998888777 99999999999999999765
No 469
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=97.72 E-value=5.6e-05 Score=64.15 Aligned_cols=45 Identities=22% Similarity=0.510 Sum_probs=36.1
Q ss_pred eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
.+...+.....+++.++....+.++ |.||+|||||||.+.|+...
T Consensus 24 ~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~ 69 (377)
T PRK11607 24 NLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFE 69 (377)
T ss_pred eEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4444555555677888888888777 99999999999999999775
No 470
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.72 E-value=6.3e-05 Score=60.97 Aligned_cols=45 Identities=24% Similarity=0.535 Sum_probs=36.4
Q ss_pred eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
.+...+.....+++.++....+.++ |.||+|+|||||++.|+...
T Consensus 18 nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 63 (269)
T PRK14259 18 NVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMN 63 (269)
T ss_pred eEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3444555556788899999888776 99999999999999999764
No 471
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.72 E-value=5.5e-05 Score=59.60 Aligned_cols=36 Identities=25% Similarity=0.507 Sum_probs=31.5
Q ss_pred EeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 29 FLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 29 ~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
..+++.++..+.+.++ |.||+|+|||||.+.++...
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5678888888888766 99999999999999999765
No 472
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.72 E-value=5.9e-05 Score=61.05 Aligned_cols=45 Identities=22% Similarity=0.530 Sum_probs=36.0
Q ss_pred eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
.+...|.....+++.++...++.++ |.||+|+|||||++.++...
T Consensus 26 ~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 71 (268)
T PRK14248 26 DLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMN 71 (268)
T ss_pred EEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 4444555556788888998888776 99999999999999999853
No 473
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.72 E-value=6.2e-05 Score=59.62 Aligned_cols=37 Identities=19% Similarity=0.427 Sum_probs=32.1
Q ss_pred eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 28 LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 28 ~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
...+++.++..+.+.++ |.||+|+|||||++.|+..+
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 35678888888888776 99999999999999999875
No 474
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=97.72 E-value=5.7e-05 Score=60.45 Aligned_cols=45 Identities=31% Similarity=0.639 Sum_probs=35.5
Q ss_pred eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
.+...+.....+++.++..+++.++ |.||+|+|||||++.|+...
T Consensus 8 ~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14240 8 DLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMN 53 (250)
T ss_pred EEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3444444445778888888888776 99999999999999999753
No 475
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=97.72 E-value=0.00034 Score=64.36 Aligned_cols=46 Identities=24% Similarity=0.359 Sum_probs=36.6
Q ss_pred eeeEecccc--eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 19 VGVYNHYKR--LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 19 ~~l~~~~~~--~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
+.+.+.|.. ...+++.++..+++..+ ++||+|+|||||++.++..+
T Consensus 481 ~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~ 529 (710)
T TIGR03796 481 RNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLY 529 (710)
T ss_pred EEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455555542 45688889999887555 99999999999999999877
No 476
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.72 E-value=5.7e-05 Score=60.50 Aligned_cols=45 Identities=27% Similarity=0.561 Sum_probs=36.3
Q ss_pred eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
.+...+.....+++.++..+.+.++ |.||+|+|||||++.|+...
T Consensus 9 ~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14251 9 DVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred eeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 4445555556778888888887766 99999999999999999875
No 477
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.72 E-value=0.00015 Score=55.39 Aligned_cols=26 Identities=42% Similarity=0.694 Sum_probs=22.9
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910 40 KSNILLVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 40 ~~~vLl~Gp~GtGKT~la~~ia~~~~ 65 (225)
...+++.||+|+||||++++++..+.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 45778999999999999999998873
No 478
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.72 E-value=4.8e-05 Score=57.31 Aligned_cols=36 Identities=28% Similarity=0.583 Sum_probs=31.0
Q ss_pred EeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 29 FLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 29 ~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
..+++.++..+++.++ +.||+|+|||||.+.++...
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4567778888887777 99999999999999999876
No 479
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.72 E-value=6.4e-05 Score=58.96 Aligned_cols=37 Identities=27% Similarity=0.496 Sum_probs=31.9
Q ss_pred eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 28 LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 28 ~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
...+.+.++...++.++ |.||+|+|||||.+.|+...
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34677888888888777 99999999999999999765
No 480
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.72 E-value=6.3e-05 Score=60.24 Aligned_cols=44 Identities=23% Similarity=0.520 Sum_probs=35.2
Q ss_pred eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
+...+.....+++.++...++.++ |.||+|+|||||++.|+...
T Consensus 11 l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~ 55 (251)
T PRK14244 11 LNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMN 55 (251)
T ss_pred EEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 333444456778888888888777 99999999999999999764
No 481
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.71 E-value=6.1e-05 Score=60.25 Aligned_cols=45 Identities=29% Similarity=0.572 Sum_probs=35.7
Q ss_pred eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910 21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~ 65 (225)
+...+.....+++.++...++.++ |.||+|+|||||++.|+....
T Consensus 9 l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (249)
T PRK14253 9 LDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMND 54 (249)
T ss_pred cEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 334444455788888988888777 999999999999999997653
No 482
>PRK14527 adenylate kinase; Provisional
Probab=97.71 E-value=2.9e-05 Score=59.57 Aligned_cols=28 Identities=25% Similarity=0.557 Sum_probs=24.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeE
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPII 69 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~ 69 (225)
-++++||||+||||+|+.+++.++...+
T Consensus 8 ~i~i~G~pGsGKsT~a~~La~~~~~~~i 35 (191)
T PRK14527 8 VVIFLGPPGAGKGTQAERLAQELGLKKL 35 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCC
Confidence 5679999999999999999999876543
No 483
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.71 E-value=0.0011 Score=49.97 Aligned_cols=31 Identities=26% Similarity=0.452 Sum_probs=26.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCeEEecc
Q psy5910 43 ILLVGPTGCGKTLMVKTLAKIINVPIIVVDA 73 (225)
Q Consensus 43 vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~ 73 (225)
+|++|++|+|||++|..++...+.+.+++..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at 32 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIAT 32 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEc
Confidence 5799999999999999998877767776644
No 484
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=97.71 E-value=5.3e-05 Score=61.44 Aligned_cols=45 Identities=29% Similarity=0.644 Sum_probs=35.9
Q ss_pred eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
.+...|.....+++.++..+.+.++ |.|++|+|||||++.|+..+
T Consensus 29 ~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 74 (271)
T PRK14238 29 NLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMV 74 (271)
T ss_pred eeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3444444445678888888888777 99999999999999999875
No 485
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.71 E-value=0.00026 Score=61.45 Aligned_cols=75 Identities=19% Similarity=0.325 Sum_probs=44.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCccccc-----CccCCcH-------HHHHHHHHHhcchhhhhhCC
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEA-----GYVGDDV-------ESIIQKLLHECDYDVELAEQ 106 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~-----~~~g~~~-------~~~~~~~~~~~~~~~~~~~~ 106 (225)
-++++|+||+|||+++..++... +.++++++..+..+. .-.|.+. ...+..+.+. +....+
T Consensus 82 ~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~----i~~~~~ 157 (446)
T PRK11823 82 VVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILAT----IEEEKP 157 (446)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHH----HHhhCC
Confidence 45699999999999999888755 566777776432110 0000000 0001111111 233477
Q ss_pred CEEEEcchhhhccc
Q psy5910 107 SIIYIDEIDKISKK 120 (225)
Q Consensus 107 ~vl~iDEid~l~~~ 120 (225)
.+++||++..+...
T Consensus 158 ~lVVIDSIq~l~~~ 171 (446)
T PRK11823 158 DLVVIDSIQTMYSP 171 (446)
T ss_pred CEEEEechhhhccc
Confidence 89999999988653
No 486
>PRK10908 cell division protein FtsE; Provisional
Probab=97.71 E-value=6.1e-05 Score=59.19 Aligned_cols=38 Identities=21% Similarity=0.350 Sum_probs=32.3
Q ss_pred ceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 27 RLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 27 ~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
....+++.++....+.++ |.||+|+|||||++.|+...
T Consensus 14 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 14 GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345677888888888777 99999999999999999765
No 487
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.71 E-value=6e-05 Score=60.31 Aligned_cols=44 Identities=25% Similarity=0.547 Sum_probs=34.6
Q ss_pred eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
+...+.....+++.++...++.++ |.||+|+|||||++.|+...
T Consensus 9 l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 53 (250)
T PRK14262 9 FSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMN 53 (250)
T ss_pred eEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 344444445678888888887766 99999999999999999654
No 488
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.71 E-value=6.2e-05 Score=60.40 Aligned_cols=45 Identities=27% Similarity=0.564 Sum_probs=36.3
Q ss_pred eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
.+...+.....+++.++...++.++ |.||+|+|||||++.|+...
T Consensus 10 ~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (255)
T PRK11300 10 GLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFY 55 (255)
T ss_pred eEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCc
Confidence 3444455556788888888888777 99999999999999999775
No 489
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=97.71 E-value=5e-05 Score=61.09 Aligned_cols=44 Identities=23% Similarity=0.346 Sum_probs=35.2
Q ss_pred eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
+...+.....+++.++...++.++ |.||+|+|||||++.++..+
T Consensus 12 l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 12 LTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred eEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344444445678888888888777 99999999999999999876
No 490
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.71 E-value=3e-05 Score=57.15 Aligned_cols=30 Identities=30% Similarity=0.556 Sum_probs=24.2
Q ss_pred EEcCCCCcHHHHHHHHHHHhCCCeEEeccCcc
Q psy5910 45 LVGPTGCGKTLMVKTLAKIINVPIIVVDATSF 76 (225)
Q Consensus 45 l~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~ 76 (225)
+.||||+||||+|+.||+.++. ..++.+++
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~--~~is~~~l 30 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL--VHISVGDL 30 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS--EEEEHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCc--ceechHHH
Confidence 5799999999999999999876 44544443
No 491
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.70 E-value=7e-05 Score=60.00 Aligned_cols=45 Identities=31% Similarity=0.629 Sum_probs=35.7
Q ss_pred eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
.+...+.....+++.++...++.++ |.||+|+|||||++.|+...
T Consensus 10 ~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (252)
T PRK14255 10 DVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMN 55 (252)
T ss_pred eEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4444555556788888888887666 99999999999999998753
No 492
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.70 E-value=7.5e-05 Score=57.75 Aligned_cols=43 Identities=28% Similarity=0.431 Sum_probs=34.6
Q ss_pred eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHH
Q psy5910 21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~ 63 (225)
+...+.....+++.++...++.++ |.||+|+|||||.+.++..
T Consensus 6 l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 6 LHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred EEEEeCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 334444456778888888888666 9999999999999999987
No 493
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=97.70 E-value=6.9e-05 Score=61.79 Aligned_cols=45 Identities=24% Similarity=0.550 Sum_probs=36.9
Q ss_pred eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
.+...|.....+++.++..+.+.++ |.||+|+|||||.+.++..+
T Consensus 9 ~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 54 (303)
T TIGR01288 9 GVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMI 54 (303)
T ss_pred eEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3445555556788899999988777 99999999999999999865
No 494
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=97.70 E-value=7.5e-05 Score=60.32 Aligned_cols=45 Identities=22% Similarity=0.563 Sum_probs=36.2
Q ss_pred eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
.+...+.....+++.++..+.+.++ |.||+|+|||||++.|+...
T Consensus 15 ~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 60 (264)
T PRK14243 15 NLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLN 60 (264)
T ss_pred eeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhh
Confidence 4455555556788889998888766 99999999999999999754
No 495
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.70 E-value=0.00078 Score=57.84 Aligned_cols=35 Identities=34% Similarity=0.416 Sum_probs=28.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcc
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSF 76 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~ 76 (225)
-++|+|++|+||||++..+|..+ |..+..+++...
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~ 139 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTF 139 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCccc
Confidence 45699999999999999998877 666777777543
No 496
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.70 E-value=5e-05 Score=57.59 Aligned_cols=36 Identities=25% Similarity=0.481 Sum_probs=30.8
Q ss_pred EeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 29 FLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 29 ~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
..+++.++..+++.++ +.||+|+|||||++.++...
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred cceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4567778888887666 99999999999999999876
No 497
>PRK14526 adenylate kinase; Provisional
Probab=97.69 E-value=4.6e-05 Score=59.43 Aligned_cols=27 Identities=30% Similarity=0.571 Sum_probs=23.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCe
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPI 68 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~ 68 (225)
+++|+|||||||||+|+.+++.++.+.
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~ 28 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYH 28 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCce
Confidence 478999999999999999999887654
No 498
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=97.69 E-value=6.9e-05 Score=60.27 Aligned_cols=44 Identities=16% Similarity=0.424 Sum_probs=35.9
Q ss_pred eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
+...+.....+++.++..+++.++ |.||+|+|||||++.++...
T Consensus 11 l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 55 (257)
T PRK10619 11 LHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLE 55 (257)
T ss_pred eEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 444444456778888988888777 99999999999999999876
No 499
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.69 E-value=6.2e-05 Score=60.28 Aligned_cols=46 Identities=30% Similarity=0.689 Sum_probs=36.6
Q ss_pred eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910 20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~ 65 (225)
.+...|.....+++.++...++.++ |.||+|+|||||++.|+..+.
T Consensus 9 ~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (251)
T PRK14249 9 GVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMND 55 (251)
T ss_pred EEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 3444454555788888988888777 999999999999999998763
No 500
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=97.69 E-value=6.4e-05 Score=60.92 Aligned_cols=44 Identities=20% Similarity=0.404 Sum_probs=35.4
Q ss_pred eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
+...|.....+++.++..+.+.++ |.||+|+|||||++.|+...
T Consensus 13 l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (269)
T PRK11831 13 VSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQI 57 (269)
T ss_pred eEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344444455678888988888766 99999999999999999775
Done!