Query psy5910
Match_columns 225
No_of_seqs 193 out of 1857
Neff 9.6
Searched_HMMs 29240
Date Fri Aug 16 21:33:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5910.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5910hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 1.1E-33 3.8E-38 236.4 6.0 173 5-204 148-323 (405)
2 4b4t_I 26S protease regulatory 100.0 1.3E-32 4.5E-37 230.6 4.3 173 5-204 182-357 (437)
3 4b4t_M 26S protease regulatory 100.0 2.2E-32 7.4E-37 231.5 4.0 173 5-204 181-356 (434)
4 4b4t_L 26S protease subunit RP 100.0 3.6E-32 1.2E-36 230.3 4.4 173 5-204 181-356 (437)
5 4b4t_H 26S protease regulatory 100.0 8E-32 2.7E-36 227.8 6.3 173 5-204 209-384 (467)
6 4b4t_K 26S protease regulatory 100.0 8.8E-32 3E-36 227.6 6.5 173 5-204 172-348 (428)
7 3cf2_A TER ATPase, transitiona 100.0 1.7E-29 5.9E-34 227.4 7.7 173 5-204 477-652 (806)
8 3hws_A ATP-dependent CLP prote 100.0 5.1E-30 1.7E-34 214.7 3.1 220 3-224 13-242 (363)
9 1um8_A ATP-dependent CLP prote 100.0 2.9E-29 9.9E-34 211.0 6.8 221 2-224 18-259 (376)
10 3cf2_A TER ATPase, transitiona 99.9 3.1E-28 1.1E-32 219.3 3.2 171 5-204 204-376 (806)
11 1xwi_A SKD1 protein; VPS4B, AA 99.9 1.5E-25 5.2E-30 184.6 10.9 171 5-204 12-183 (322)
12 3eie_A Vacuolar protein sortin 99.9 1.4E-25 4.8E-30 184.8 8.6 171 5-204 18-188 (322)
13 1g41_A Heat shock protein HSLU 99.9 7.5E-26 2.6E-30 191.9 5.5 189 2-204 12-340 (444)
14 2qp9_X Vacuolar protein sortin 99.9 8.6E-25 2.9E-29 182.4 7.6 171 5-204 51-221 (355)
15 3cf0_A Transitional endoplasmi 99.9 2.2E-25 7.5E-30 182.0 1.9 173 5-204 15-190 (301)
16 3t15_A Ribulose bisphosphate c 99.9 3.1E-24 1E-28 174.6 6.8 148 40-198 36-185 (293)
17 2zan_A Vacuolar protein sortin 99.9 4.2E-24 1.4E-28 183.1 5.7 171 5-204 134-305 (444)
18 2ce7_A Cell division protein F 99.9 5.1E-24 1.7E-28 182.9 5.5 172 5-204 16-190 (476)
19 2x8a_A Nuclear valosin-contain 99.9 5.9E-24 2E-28 171.3 5.1 171 5-204 10-182 (274)
20 3vfd_A Spastin; ATPase, microt 99.9 2.8E-23 9.6E-28 175.3 8.8 172 5-204 115-286 (389)
21 3d8b_A Fidgetin-like protein 1 99.9 2.7E-23 9.3E-28 173.5 8.4 172 5-204 84-255 (357)
22 3b9p_A CG5977-PA, isoform A; A 99.9 6.1E-23 2.1E-27 167.0 9.0 173 5-204 21-193 (297)
23 3h4m_A Proteasome-activating n 99.9 2.4E-23 8.2E-28 168.4 6.5 174 5-204 17-192 (285)
24 1lv7_A FTSH; alpha/beta domain 99.9 5.5E-23 1.9E-27 164.0 8.5 172 5-204 12-186 (257)
25 3hu3_A Transitional endoplasmi 99.9 1.2E-23 4.1E-28 181.7 2.9 170 6-204 205-376 (489)
26 1ofh_A ATP-dependent HSL prote 99.9 2.7E-23 9.3E-28 169.6 4.6 193 3-204 13-206 (310)
27 2qz4_A Paraplegin; AAA+, SPG7, 99.9 8.4E-23 2.9E-27 163.0 6.9 172 5-204 6-181 (262)
28 1ypw_A Transitional endoplasmi 99.9 6.7E-24 2.3E-28 193.3 -0.4 173 5-204 477-652 (806)
29 2dhr_A FTSH; AAA+ protein, hex 99.8 5.1E-22 1.8E-26 171.4 5.7 172 5-204 31-205 (499)
30 2r62_A Cell division protease 99.8 2.2E-23 7.5E-28 167.2 -5.1 173 5-204 11-187 (268)
31 3syl_A Protein CBBX; photosynt 99.8 2.4E-20 8.3E-25 152.3 7.5 172 3-204 29-208 (309)
32 3m6a_A ATP-dependent protease 99.8 6E-21 2.1E-25 167.1 3.5 186 3-221 79-276 (543)
33 1ixz_A ATP-dependent metallopr 99.8 6E-21 2.1E-25 151.9 2.9 172 5-204 16-190 (254)
34 2c9o_A RUVB-like 1; hexameric 99.8 3.1E-21 1.1E-25 165.9 0.9 168 4-202 36-226 (456)
35 3pfi_A Holliday junction ATP-d 99.8 1.6E-19 5.4E-24 149.3 9.7 157 5-204 29-188 (338)
36 1ypw_A Transitional endoplasmi 99.8 2.3E-20 7.9E-25 170.1 3.6 171 5-204 204-376 (806)
37 1r6b_X CLPA protein; AAA+, N-t 99.8 3.1E-20 1.1E-24 168.8 3.9 173 3-204 456-657 (758)
38 1iy2_A ATP-dependent metallopr 99.8 5.5E-20 1.9E-24 148.3 4.5 172 5-204 40-214 (278)
39 3pxi_A Negative regulator of g 99.8 2.9E-19 9.8E-24 162.4 6.8 170 3-204 489-666 (758)
40 4fcw_A Chaperone protein CLPB; 99.8 1.8E-19 6E-24 147.2 3.8 173 3-204 15-220 (311)
41 3n70_A Transport activator; si 99.7 4.5E-19 1.5E-23 129.5 3.7 111 6-172 2-115 (145)
42 1d2n_A N-ethylmaleimide-sensit 99.7 5.4E-18 1.9E-22 136.1 7.8 166 3-202 31-200 (272)
43 2r44_A Uncharacterized protein 99.7 1.8E-19 6.1E-24 148.7 -1.5 160 3-204 25-189 (331)
44 3f9v_A Minichromosome maintena 99.7 9E-20 3.1E-24 161.1 -4.7 173 3-194 293-471 (595)
45 3co5_A Putative two-component 99.7 2.4E-18 8.2E-23 125.3 3.6 136 5-198 4-140 (143)
46 3uk6_A RUVB-like 2; hexameric 99.7 1.5E-17 5.1E-22 138.9 8.6 161 5-204 44-263 (368)
47 2p65_A Hypothetical protein PF 99.7 7.9E-18 2.7E-22 126.9 5.9 155 5-201 22-187 (187)
48 1g8p_A Magnesium-chelatase 38 99.7 3.1E-18 1.1E-22 142.0 3.8 163 5-202 24-220 (350)
49 1jbk_A CLPB protein; beta barr 99.7 8.5E-18 2.9E-22 127.1 4.7 156 5-203 22-188 (195)
50 1qvr_A CLPB protein; coiled co 99.7 1.2E-17 4.2E-22 153.4 5.3 172 4-204 557-761 (854)
51 3pvs_A Replication-associated 99.7 2.3E-17 8E-22 141.1 6.5 138 6-204 27-169 (447)
52 1hqc_A RUVB; extended AAA-ATPa 99.7 1.5E-17 5E-22 136.5 4.2 156 5-204 12-172 (324)
53 3nbx_X ATPase RAVA; AAA+ ATPas 99.7 1.3E-17 4.3E-22 144.2 3.9 161 3-203 20-185 (500)
54 1ojl_A Transcriptional regulat 99.7 5.8E-17 2E-21 132.3 6.5 168 4-201 1-176 (304)
55 2bjv_A PSP operon transcriptio 99.7 1.3E-16 4.5E-21 127.5 7.3 168 5-202 6-181 (265)
56 3u61_B DNA polymerase accessor 99.6 4.4E-17 1.5E-21 133.9 3.2 141 5-203 26-168 (324)
57 3pxg_A Negative regulator of g 99.6 7.5E-17 2.6E-21 138.9 3.2 134 6-204 181-329 (468)
58 2chg_A Replication factor C sm 99.6 8.8E-16 3E-20 118.5 7.9 144 5-204 17-165 (226)
59 1sxj_D Activator 1 41 kDa subu 99.6 7.9E-16 2.7E-20 127.5 5.7 146 5-204 37-196 (353)
60 3pxi_A Negative regulator of g 99.6 3E-16 1E-20 142.6 3.2 134 6-204 181-329 (758)
61 3f8t_A Predicted ATPase involv 99.6 1.6E-16 5.6E-21 134.4 -1.3 182 3-218 212-401 (506)
62 1qvr_A CLPB protein; coiled co 99.6 9.3E-16 3.2E-20 141.0 3.5 154 6-204 171-336 (854)
63 1r6b_X CLPA protein; AAA+, N-t 99.6 2.6E-15 9E-20 136.4 6.1 157 5-204 186-353 (758)
64 2v1u_A Cell division control p 99.6 5.2E-15 1.8E-19 123.7 7.5 162 5-204 19-205 (387)
65 1njg_A DNA polymerase III subu 99.6 1E-14 3.5E-19 113.8 8.5 151 5-204 23-189 (250)
66 3te6_A Regulatory protein SIR3 99.5 2.7E-15 9.4E-20 122.4 4.9 156 6-204 21-202 (318)
67 1iqp_A RFCS; clamp loader, ext 99.5 5.8E-15 2E-19 120.9 6.5 144 5-204 25-173 (327)
68 1in4_A RUVB, holliday junction 99.5 2.1E-14 7.3E-19 118.5 9.8 153 7-204 27-184 (334)
69 2qby_B CDC6 homolog 3, cell di 99.5 5.4E-15 1.8E-19 123.8 6.1 153 5-204 20-201 (384)
70 2chq_A Replication factor C sm 99.5 2.8E-15 9.7E-20 122.3 4.1 144 5-204 17-165 (319)
71 2gno_A DNA polymerase III, gam 99.5 2.7E-14 9.3E-19 116.3 8.7 137 9-204 1-143 (305)
72 1sxj_B Activator 1 37 kDa subu 99.5 1.3E-14 4.6E-19 118.5 5.9 142 5-204 21-170 (323)
73 1sxj_A Activator 1 95 kDa subu 99.5 3.6E-14 1.2E-18 123.7 8.3 122 5-144 39-177 (516)
74 3k1j_A LON protease, ATP-depen 99.5 1.5E-14 5.3E-19 128.2 5.4 46 5-66 41-86 (604)
75 1sxj_C Activator 1 40 kDa subu 99.5 6E-14 2E-18 116.1 7.7 142 3-203 24-172 (340)
76 1jr3_A DNA polymerase III subu 99.5 5.8E-14 2E-18 117.1 6.7 143 5-204 16-182 (373)
77 1l8q_A Chromosomal replication 99.5 3.6E-14 1.2E-18 116.5 4.7 128 41-204 38-170 (324)
78 1a5t_A Delta prime, HOLB; zinc 99.4 3.6E-13 1.2E-17 111.2 10.3 122 42-204 26-171 (334)
79 1fnn_A CDC6P, cell division co 99.4 8E-14 2.8E-18 116.7 6.0 159 5-204 17-197 (389)
80 1sxj_E Activator 1 40 kDa subu 99.4 1.4E-13 4.6E-18 114.2 7.0 144 5-204 14-197 (354)
81 2qby_A CDC6 homolog 1, cell di 99.4 2.3E-13 7.7E-18 113.6 7.9 159 5-204 20-201 (386)
82 2z4s_A Chromosomal replication 99.4 4.3E-13 1.5E-17 114.6 8.9 127 41-204 131-267 (440)
83 3bos_A Putative DNA replicatio 99.4 6.1E-13 2.1E-17 104.0 8.3 122 40-204 52-178 (242)
84 1ny5_A Transcriptional regulat 99.4 4.4E-13 1.5E-17 112.8 7.6 116 40-189 160-289 (387)
85 3dzd_A Transcriptional regulat 99.3 1.1E-12 3.8E-17 109.5 6.7 108 40-172 152-272 (368)
86 4akg_A Glutathione S-transfera 99.2 2.1E-11 7.1E-16 121.6 7.4 144 40-204 1267-1422(2695)
87 3ec2_A DNA replication protein 99.1 6.7E-12 2.3E-16 94.3 1.5 110 3-144 9-128 (180)
88 2kjq_A DNAA-related protein; s 99.1 4E-10 1.4E-14 82.2 8.0 70 41-144 37-109 (149)
89 4akg_A Glutathione S-transfera 99.1 1.8E-10 6.2E-15 115.0 8.0 131 41-203 646-783 (2695)
90 2w58_A DNAI, primosome compone 99.0 1.6E-10 5.4E-15 88.3 3.7 36 41-76 55-93 (202)
91 1w5s_A Origin recognition comp 99.0 2.9E-10 9.9E-15 95.8 4.6 168 5-204 22-219 (412)
92 1tue_A Replication protein E1; 99.0 4.9E-10 1.7E-14 85.2 5.3 121 41-200 59-179 (212)
93 3cmw_A Protein RECA, recombina 99.0 1.2E-09 4.1E-14 105.2 8.9 135 6-144 1021-1203(1706)
94 2r2a_A Uncharacterized protein 98.8 2.2E-08 7.5E-13 76.3 8.4 126 42-201 7-154 (199)
95 2qgz_A Helicase loader, putati 98.8 8.2E-10 2.8E-14 90.0 -0.3 37 40-76 152-192 (308)
96 2vhj_A Ntpase P4, P4; non- hyd 98.7 4.2E-08 1.4E-12 79.7 8.3 73 41-121 124-198 (331)
97 1u0j_A DNA replication protein 98.7 8.9E-08 3.1E-12 75.8 9.0 27 40-66 104-130 (267)
98 3vkg_A Dynein heavy chain, cyt 98.6 1.4E-07 4.8E-12 95.4 10.4 131 42-204 606-744 (3245)
99 2qen_A Walker-type ATPase; unk 98.6 1.6E-07 5.3E-12 77.0 8.9 52 5-74 12-63 (350)
100 3vkg_A Dynein heavy chain, cyt 98.6 4.2E-08 1.4E-12 99.1 5.1 144 40-204 1304-1460(3245)
101 1ye8_A Protein THEP1, hypothet 98.5 1E-06 3.4E-11 65.9 10.6 26 42-67 2-27 (178)
102 2fna_A Conserved hypothetical 98.4 9.3E-07 3.2E-11 72.5 8.7 53 5-75 13-65 (357)
103 3cmu_A Protein RECA, recombina 98.4 7.3E-07 2.5E-11 87.3 8.8 79 39-121 1426-1521(2050)
104 3vaa_A Shikimate kinase, SK; s 98.3 4.9E-07 1.7E-11 68.6 4.4 42 31-72 15-57 (199)
105 3trf_A Shikimate kinase, SK; a 98.2 1E-06 3.6E-11 65.8 4.4 32 41-72 6-37 (185)
106 1qhx_A CPT, protein (chloramph 98.2 1.4E-06 4.7E-11 64.7 4.9 32 42-73 5-36 (178)
107 2w0m_A SSO2452; RECA, SSPF, un 98.1 4.5E-05 1.5E-09 58.6 12.4 32 42-73 25-59 (235)
108 2cvh_A DNA repair and recombin 98.1 1.6E-05 5.4E-10 60.7 9.6 34 42-75 22-55 (220)
109 3kb2_A SPBC2 prophage-derived 98.1 2.5E-06 8.4E-11 62.8 4.6 31 42-72 3-33 (173)
110 3fvq_A Fe(3+) IONS import ATP- 98.1 3.2E-06 1.1E-10 69.9 5.6 46 19-64 8-54 (359)
111 2ehv_A Hypothetical protein PH 98.1 3E-05 1E-09 60.4 10.5 36 38-73 27-67 (251)
112 2pcj_A ABC transporter, lipopr 98.1 3.7E-06 1.3E-10 65.1 5.2 46 20-65 9-55 (224)
113 1via_A Shikimate kinase; struc 98.1 2.3E-06 7.8E-11 63.4 3.8 30 42-71 6-35 (175)
114 3rlf_A Maltose/maltodextrin im 98.1 4.1E-06 1.4E-10 69.8 5.7 47 19-65 7-54 (381)
115 2iyv_A Shikimate kinase, SK; t 98.1 3.2E-06 1.1E-10 63.0 4.4 31 42-72 4-34 (184)
116 1zuh_A Shikimate kinase; alpha 98.1 3.2E-06 1.1E-10 62.2 4.3 32 41-72 8-39 (168)
117 3iij_A Coilin-interacting nucl 98.1 2.7E-06 9.4E-11 63.3 3.9 32 41-72 12-43 (180)
118 4g1u_C Hemin import ATP-bindin 98.1 4.4E-06 1.5E-10 66.4 5.3 46 19-64 15-61 (266)
119 1kag_A SKI, shikimate kinase I 98.0 3.2E-06 1.1E-10 62.4 4.1 28 42-69 6-33 (173)
120 1b0u_A Histidine permease; ABC 98.0 4.8E-06 1.6E-10 66.1 5.1 46 20-65 11-57 (262)
121 1zp6_A Hypothetical protein AT 98.0 3.2E-06 1.1E-10 63.4 3.6 35 42-76 11-45 (191)
122 2orw_A Thymidine kinase; TMTK, 98.0 1.3E-05 4.6E-10 60.1 7.0 30 42-71 5-37 (184)
123 1g6h_A High-affinity branched- 98.0 6E-06 2.1E-10 65.3 5.2 46 19-64 11-57 (257)
124 2d2e_A SUFC protein; ABC-ATPas 98.0 7.8E-06 2.7E-10 64.4 5.8 44 20-63 8-52 (250)
125 1ji0_A ABC transporter; ATP bi 98.0 6.8E-06 2.3E-10 64.3 5.3 45 20-64 11-56 (240)
126 2cdn_A Adenylate kinase; phosp 98.0 4.7E-06 1.6E-10 63.1 4.3 30 42-71 22-51 (201)
127 2yyz_A Sugar ABC transporter, 98.0 7.6E-06 2.6E-10 67.8 5.7 45 20-64 8-53 (359)
128 1g29_1 MALK, maltose transport 98.0 8E-06 2.7E-10 68.0 5.8 45 20-64 8-53 (372)
129 1y63_A LMAJ004144AAA protein; 98.0 3.5E-06 1.2E-10 63.1 3.4 31 41-71 11-42 (184)
130 2olj_A Amino acid ABC transpor 98.0 7E-06 2.4E-10 65.1 5.1 47 19-65 28-75 (263)
131 2ze6_A Isopentenyl transferase 98.0 5.9E-06 2E-10 65.2 4.7 32 42-73 3-34 (253)
132 2it1_A 362AA long hypothetical 98.0 7.2E-06 2.5E-10 68.0 5.3 46 20-65 8-54 (362)
133 1v43_A Sugar-binding transport 98.0 8.2E-06 2.8E-10 67.9 5.7 45 20-64 16-61 (372)
134 2zu0_C Probable ATP-dependent 98.0 9.2E-06 3.1E-10 64.6 5.7 45 19-63 24-69 (267)
135 2rhm_A Putative kinase; P-loop 98.0 5.4E-06 1.9E-10 62.1 4.1 30 42-71 7-36 (193)
136 2ihy_A ABC transporter, ATP-bi 98.0 8.8E-06 3E-10 65.1 5.3 45 20-64 26-71 (279)
137 3upu_A ATP-dependent DNA helic 98.0 1.8E-05 6E-10 67.8 7.5 47 3-64 23-69 (459)
138 3t61_A Gluconokinase; PSI-biol 97.9 7.3E-06 2.5E-10 62.1 4.6 31 41-71 19-49 (202)
139 1sgw_A Putative ABC transporte 97.9 7.9E-06 2.7E-10 62.8 4.7 45 20-65 15-60 (214)
140 3tif_A Uncharacterized ABC tra 97.9 9.1E-06 3.1E-10 63.4 5.1 37 28-64 18-55 (235)
141 1vpl_A ABC transporter, ATP-bi 97.9 9.1E-06 3.1E-10 64.2 5.1 46 19-64 19-65 (256)
142 1e6c_A Shikimate kinase; phosp 97.9 5.6E-06 1.9E-10 60.9 3.6 30 42-71 4-33 (173)
143 3lw7_A Adenylate kinase relate 97.9 6E-06 2E-10 60.6 3.4 29 42-71 3-31 (179)
144 1z47_A CYSA, putative ABC-tran 97.9 8.1E-06 2.8E-10 67.5 4.5 45 20-64 19-65 (355)
145 2ff7_A Alpha-hemolysin translo 97.9 1.1E-05 3.8E-10 63.4 5.1 46 19-64 11-59 (247)
146 1aky_A Adenylate kinase; ATP:A 97.9 6.9E-06 2.4E-10 63.1 3.9 31 41-71 5-35 (220)
147 3gfo_A Cobalt import ATP-bindi 97.9 9.5E-06 3.2E-10 64.8 4.6 45 20-64 12-58 (275)
148 2pt5_A Shikimate kinase, SK; a 97.9 8.8E-06 3E-10 59.6 4.1 30 42-71 2-31 (168)
149 3dl0_A Adenylate kinase; phosp 97.9 8E-06 2.7E-10 62.5 4.0 30 42-71 2-31 (216)
150 2c95_A Adenylate kinase 1; tra 97.9 7E-06 2.4E-10 61.6 3.6 31 41-71 10-40 (196)
151 3cm0_A Adenylate kinase; ATP-b 97.9 7.8E-06 2.7E-10 60.9 3.9 29 42-70 6-34 (186)
152 3fb4_A Adenylate kinase; psych 97.9 8.8E-06 3E-10 62.3 4.2 30 42-71 2-31 (216)
153 3uie_A Adenylyl-sulfate kinase 97.9 3.3E-06 1.1E-10 64.0 1.7 35 42-76 27-64 (200)
154 1tev_A UMP-CMP kinase; ploop, 97.9 7.3E-06 2.5E-10 61.4 3.5 29 42-70 5-33 (196)
155 2p5t_B PEZT; postsegregational 97.9 6.8E-06 2.3E-10 64.8 3.4 36 42-77 34-69 (253)
156 3d31_A Sulfate/molybdate ABC t 97.9 1E-05 3.4E-10 66.8 4.4 44 20-64 6-50 (348)
157 1z6g_A Guanylate kinase; struc 97.9 7.3E-06 2.5E-10 63.1 3.3 36 29-64 11-47 (218)
158 3gd7_A Fusion complex of cysti 97.9 1.1E-05 3.9E-10 67.5 4.6 46 19-64 23-71 (390)
159 3nwj_A ATSK2; P loop, shikimat 97.9 2.2E-06 7.6E-11 67.5 0.3 43 29-71 33-79 (250)
160 2vli_A Antibiotic resistance p 97.9 7.8E-06 2.7E-10 60.7 3.3 29 41-69 6-34 (183)
161 1gvn_B Zeta; postsegregational 97.9 8.4E-06 2.9E-10 65.5 3.6 35 42-76 35-69 (287)
162 1kht_A Adenylate kinase; phosp 97.9 7.5E-06 2.6E-10 61.2 3.2 24 42-65 5-28 (192)
163 1knq_A Gluconate kinase; ALFA/ 97.9 1.1E-05 3.8E-10 59.6 4.1 28 42-69 10-37 (175)
164 2nq2_C Hypothetical ABC transp 97.9 1.3E-05 4.6E-10 63.1 4.7 45 21-65 10-56 (253)
165 4eun_A Thermoresistant glucoki 97.9 1.2E-05 4.2E-10 60.8 4.4 33 42-76 31-63 (200)
166 2cbz_A Multidrug resistance-as 97.9 1.1E-05 3.9E-10 62.9 4.2 45 20-64 8-55 (237)
167 1svm_A Large T antigen; AAA+ f 97.8 5.7E-06 2E-10 69.0 2.6 68 34-119 162-230 (377)
168 1n0w_A DNA repair protein RAD5 97.8 2.8E-05 9.6E-10 60.3 6.4 37 39-75 22-68 (243)
169 3dm5_A SRP54, signal recogniti 97.8 0.00012 4.2E-09 62.0 10.7 35 41-75 101-138 (443)
170 1mv5_A LMRA, multidrug resista 97.8 1.1E-05 3.9E-10 63.2 4.1 45 20-64 6-52 (243)
171 2bwj_A Adenylate kinase 5; pho 97.8 9.5E-06 3.3E-10 61.1 3.5 29 42-70 14-42 (199)
172 1ak2_A Adenylate kinase isoenz 97.8 1.1E-05 3.8E-10 62.6 3.8 31 41-71 17-47 (233)
173 1oxx_K GLCV, glucose, ABC tran 97.8 8.3E-06 2.9E-10 67.4 3.2 45 20-64 8-55 (353)
174 2jeo_A Uridine-cytidine kinase 97.8 1.2E-05 3.9E-10 63.1 3.9 39 29-67 13-52 (245)
175 2ixe_A Antigen peptide transpo 97.8 1.4E-05 4.6E-10 63.8 4.3 45 20-64 21-69 (271)
176 1zd8_A GTP:AMP phosphotransfer 97.8 1.1E-05 3.7E-10 62.4 3.6 31 41-71 8-38 (227)
177 2zr9_A Protein RECA, recombina 97.8 7.9E-05 2.7E-09 61.5 9.0 74 42-119 63-153 (349)
178 2b8t_A Thymidine kinase; deoxy 97.8 0.00011 3.9E-09 56.6 9.2 31 42-72 14-47 (223)
179 1qf9_A UMP/CMP kinase, protein 97.8 1.2E-05 4.1E-10 60.1 3.6 30 42-71 8-37 (194)
180 3sr0_A Adenylate kinase; phosp 97.8 1.5E-05 5.1E-10 60.9 4.1 28 42-69 2-29 (206)
181 2yz2_A Putative ABC transporte 97.8 2.2E-05 7.4E-10 62.4 5.1 37 28-64 20-57 (266)
182 1e4v_A Adenylate kinase; trans 97.8 1.5E-05 5.2E-10 61.0 4.1 30 42-71 2-31 (214)
183 2pze_A Cystic fibrosis transme 97.8 1.7E-05 5.9E-10 61.5 4.4 46 20-65 11-59 (229)
184 1ly1_A Polynucleotide kinase; 97.8 9.9E-06 3.4E-10 59.9 2.9 30 42-73 4-34 (181)
185 3be4_A Adenylate kinase; malar 97.8 1.3E-05 4.3E-10 61.6 3.5 30 42-71 7-36 (217)
186 4gp7_A Metallophosphoesterase; 97.8 1.5E-05 5.2E-10 58.9 3.8 26 34-59 2-28 (171)
187 3hr8_A Protein RECA; alpha and 97.8 0.0001 3.5E-09 60.9 9.1 78 38-119 58-153 (356)
188 1ukz_A Uridylate kinase; trans 97.8 1.4E-05 4.7E-10 60.5 3.5 30 42-71 17-46 (203)
189 1zak_A Adenylate kinase; ATP:A 97.8 1.4E-05 4.8E-10 61.5 3.5 29 41-69 6-34 (222)
190 3tlx_A Adenylate kinase 2; str 97.8 1.4E-05 4.7E-10 62.7 3.5 30 42-71 31-60 (243)
191 1cke_A CK, MSSA, protein (cyti 97.8 1.8E-05 6E-10 60.9 4.1 28 42-69 7-34 (227)
192 3nh6_A ATP-binding cassette SU 97.8 1.4E-05 4.8E-10 64.8 3.5 47 19-65 57-105 (306)
193 2pez_A Bifunctional 3'-phospho 97.8 2.7E-05 9.1E-10 57.8 4.8 35 42-76 7-44 (179)
194 3tui_C Methionine import ATP-b 97.8 3.2E-05 1.1E-09 64.0 5.6 37 28-64 41-78 (366)
195 3umf_A Adenylate kinase; rossm 97.8 1.7E-05 5.8E-10 61.0 3.7 27 42-68 31-57 (217)
196 2jaq_A Deoxyguanosine kinase; 97.7 1.9E-05 6.5E-10 59.5 3.9 28 42-69 2-29 (205)
197 3tr0_A Guanylate kinase, GMP k 97.7 1.8E-05 6E-10 59.9 3.7 25 41-65 7-32 (205)
198 2pjz_A Hypothetical protein ST 97.7 3E-05 1E-09 61.5 5.0 36 28-64 18-54 (263)
199 2pbr_A DTMP kinase, thymidylat 97.7 3.1E-05 1.1E-09 57.9 4.8 30 43-72 3-35 (195)
200 2if2_A Dephospho-COA kinase; a 97.7 1.8E-05 6.1E-10 59.9 3.4 29 42-71 3-31 (204)
201 2onk_A Molybdate/tungstate ABC 97.7 3.7E-05 1.3E-09 60.1 5.1 34 31-65 15-49 (240)
202 2xb4_A Adenylate kinase; ATP-b 97.7 2.6E-05 9E-10 60.1 4.1 30 42-71 2-31 (223)
203 2ghi_A Transport protein; mult 97.7 2.6E-05 8.9E-10 61.7 4.1 45 20-64 22-70 (260)
204 2z0h_A DTMP kinase, thymidylat 97.7 3.6E-05 1.2E-09 57.8 4.7 30 43-72 3-35 (197)
205 4f4c_A Multidrug resistance pr 97.7 0.00016 5.4E-09 69.5 10.0 48 19-66 419-470 (1321)
206 3a4m_A L-seryl-tRNA(SEC) kinas 97.7 2.9E-05 9.9E-10 61.4 4.3 35 42-76 6-43 (260)
207 1nks_A Adenylate kinase; therm 97.7 1.6E-05 5.3E-10 59.4 2.5 32 42-73 3-37 (194)
208 3r20_A Cytidylate kinase; stru 97.7 3.2E-05 1.1E-09 60.1 4.3 28 42-69 11-38 (233)
209 1ex7_A Guanylate kinase; subst 97.7 4E-05 1.4E-09 57.5 4.7 28 41-68 2-29 (186)
210 3ake_A Cytidylate kinase; CMP 97.7 3.5E-05 1.2E-09 58.3 4.4 30 42-71 4-33 (208)
211 3crm_A TRNA delta(2)-isopenten 97.7 2.7E-05 9.1E-10 63.4 3.8 32 42-73 7-38 (323)
212 3kl4_A SRP54, signal recogniti 97.7 0.00026 8.9E-09 59.9 10.0 34 41-74 98-134 (433)
213 2bbw_A Adenylate kinase 4, AK4 97.7 3.4E-05 1.2E-09 60.3 4.3 29 41-69 28-56 (246)
214 1g5t_A COB(I)alamin adenosyltr 97.7 0.00035 1.2E-08 52.6 9.7 32 40-71 28-62 (196)
215 1jjv_A Dephospho-COA kinase; P 97.7 2.8E-05 9.7E-10 59.0 3.7 28 42-70 4-31 (206)
216 2r8r_A Sensor protein; KDPD, P 97.6 0.0012 4.2E-08 50.8 12.6 32 42-73 8-42 (228)
217 1vma_A Cell division protein F 97.6 0.00026 8.8E-09 57.3 9.3 33 42-74 106-141 (306)
218 2grj_A Dephospho-COA kinase; T 97.6 3.6E-05 1.2E-09 58.1 3.7 30 42-71 14-43 (192)
219 1htw_A HI0065; nucleotide-bind 97.6 2.9E-05 9.9E-10 56.7 3.1 32 33-64 25-57 (158)
220 3cmu_A Protein RECA, recombina 97.6 0.00018 6.3E-09 70.8 9.3 81 38-121 1079-1175(2050)
221 4e22_A Cytidylate kinase; P-lo 97.6 4E-05 1.4E-09 60.3 3.9 28 42-69 29-56 (252)
222 3e1s_A Exodeoxyribonuclease V, 97.6 0.00012 4E-09 64.5 7.2 33 40-72 204-239 (574)
223 2plr_A DTMP kinase, probable t 97.6 4.2E-05 1.4E-09 58.0 3.9 26 42-67 6-31 (213)
224 2v54_A DTMP kinase, thymidylat 97.6 3.8E-05 1.3E-09 57.9 3.6 31 42-72 6-37 (204)
225 1u94_A RECA protein, recombina 97.6 0.00027 9.1E-09 58.5 8.9 74 42-119 65-155 (356)
226 1uf9_A TT1252 protein; P-loop, 97.6 3.7E-05 1.3E-09 57.9 3.5 28 42-70 10-37 (203)
227 1kgd_A CASK, peripheral plasma 97.6 4E-05 1.4E-09 57.0 3.6 24 42-65 7-30 (180)
228 3b9q_A Chloroplast SRP recepto 97.6 2.3E-05 8E-10 63.4 2.4 31 34-64 93-124 (302)
229 3lda_A DNA repair protein RAD5 97.6 0.00022 7.4E-09 59.9 8.4 38 38-75 175-222 (400)
230 2qor_A Guanylate kinase; phosp 97.6 4.5E-05 1.5E-09 57.9 3.6 25 41-65 13-37 (204)
231 3jvv_A Twitching mobility prot 97.6 8.4E-05 2.9E-09 61.5 5.5 24 41-64 124-147 (356)
232 1znw_A Guanylate kinase, GMP k 97.6 4.6E-05 1.6E-09 58.0 3.7 28 38-65 17-45 (207)
233 2z43_A DNA repair and recombin 97.6 0.00015 5.1E-09 59.2 6.9 34 42-75 109-151 (324)
234 3lnc_A Guanylate kinase, GMP k 97.6 2.9E-05 9.8E-10 60.1 2.5 32 33-64 19-52 (231)
235 2fz4_A DNA repair protein RAD2 97.6 0.00035 1.2E-08 54.3 8.7 34 41-74 109-142 (237)
236 2wwf_A Thymidilate kinase, put 97.6 2.6E-05 8.9E-10 59.3 2.1 27 41-67 11-37 (212)
237 2ga8_A Hypothetical 39.9 kDa p 97.5 1.3E-05 4.6E-10 65.9 0.4 29 42-70 26-54 (359)
238 1xp8_A RECA protein, recombina 97.5 0.00032 1.1E-08 58.2 8.7 74 42-119 76-166 (366)
239 2v9p_A Replication protein E1; 97.5 2.6E-05 8.8E-10 63.1 2.0 35 30-64 115-150 (305)
240 3c8u_A Fructokinase; YP_612366 97.5 5.1E-05 1.7E-09 57.8 3.4 24 42-65 24-47 (208)
241 2qi9_C Vitamin B12 import ATP- 97.5 5.3E-05 1.8E-09 59.6 3.6 36 30-65 15-51 (249)
242 1jr3_D DNA polymerase III, del 97.5 0.00034 1.2E-08 57.3 8.4 121 41-203 19-145 (343)
243 2bdt_A BH3686; alpha-beta prot 97.5 7E-05 2.4E-09 55.9 3.9 33 42-75 4-36 (189)
244 2j41_A Guanylate kinase; GMP, 97.5 5.2E-05 1.8E-09 57.3 3.3 23 42-64 8-30 (207)
245 3asz_A Uridine kinase; cytidin 97.5 5.8E-05 2E-09 57.4 3.4 23 43-65 9-31 (211)
246 2yvu_A Probable adenylyl-sulfa 97.5 6.9E-05 2.4E-09 55.8 3.7 35 42-76 15-52 (186)
247 3tau_A Guanylate kinase, GMP k 97.5 5.8E-05 2E-09 57.5 3.3 25 42-66 10-34 (208)
248 1uj2_A Uridine-cytidine kinase 97.5 8.6E-05 2.9E-09 58.3 4.3 26 42-67 24-49 (252)
249 1rz3_A Hypothetical protein rb 97.5 9.9E-05 3.4E-09 55.9 4.5 31 43-73 25-58 (201)
250 3a8t_A Adenylate isopentenyltr 97.5 4.7E-05 1.6E-09 62.3 2.8 32 42-73 42-73 (339)
251 1lvg_A Guanylate kinase, GMP k 97.5 7.2E-05 2.4E-09 56.6 3.7 25 41-65 5-29 (198)
252 1nn5_A Similar to deoxythymidy 97.5 3.6E-05 1.2E-09 58.6 2.0 25 41-65 10-34 (215)
253 1v5w_A DMC1, meiotic recombina 97.5 0.00026 8.7E-09 58.3 7.1 38 38-75 119-166 (343)
254 2qt1_A Nicotinamide riboside k 97.5 5.5E-05 1.9E-09 57.4 2.8 28 42-69 23-51 (207)
255 3a00_A Guanylate kinase, GMP k 97.5 8E-05 2.7E-09 55.6 3.6 24 42-65 3-26 (186)
256 1vht_A Dephospho-COA kinase; s 97.5 8.1E-05 2.8E-09 56.9 3.7 29 42-71 6-34 (218)
257 4f4c_A Multidrug resistance pr 97.4 0.00012 4.1E-09 70.3 5.6 58 19-76 1080-1143(1321)
258 1q3t_A Cytidylate kinase; nucl 97.4 9.5E-05 3.3E-09 57.4 4.1 30 41-70 17-46 (236)
259 2h92_A Cytidylate kinase; ross 97.4 8.8E-05 3E-09 56.7 3.9 29 42-70 5-33 (219)
260 2iut_A DNA translocase FTSK; n 97.4 0.00038 1.3E-08 60.7 8.2 36 40-75 214-256 (574)
261 2pt7_A CAG-ALFA; ATPase, prote 97.4 0.00027 9.2E-09 57.8 6.9 68 41-116 172-251 (330)
262 3kta_A Chromosome segregation 97.4 0.0001 3.5E-09 54.6 3.9 33 33-65 19-51 (182)
263 3fdi_A Uncharacterized protein 97.4 0.00012 4E-09 55.7 4.3 29 42-70 8-36 (201)
264 2og2_A Putative signal recogni 97.4 5.2E-05 1.8E-09 62.7 2.5 31 34-64 150-181 (359)
265 3foz_A TRNA delta(2)-isopenten 97.4 0.00011 3.6E-09 59.4 4.2 32 42-73 12-43 (316)
266 1s96_A Guanylate kinase, GMP k 97.4 9.2E-05 3.1E-09 57.0 3.7 28 38-65 13-41 (219)
267 4a74_A DNA repair and recombin 97.4 0.00012 4E-09 56.2 4.1 27 38-64 22-49 (231)
268 3d3q_A TRNA delta(2)-isopenten 97.4 0.0001 3.4E-09 60.4 3.7 31 42-72 9-39 (340)
269 2qmh_A HPR kinase/phosphorylas 97.4 8.9E-05 3E-09 56.0 3.0 29 37-65 31-59 (205)
270 2zts_A Putative uncharacterize 97.4 0.0021 7.2E-08 49.7 11.0 33 42-74 32-68 (251)
271 2bbs_A Cystic fibrosis transme 97.4 9.9E-05 3.4E-09 59.3 3.4 36 29-64 52-88 (290)
272 3ney_A 55 kDa erythrocyte memb 97.4 0.00016 5.6E-09 54.6 4.4 25 41-65 20-44 (197)
273 3exa_A TRNA delta(2)-isopenten 97.4 9.6E-05 3.3E-09 59.8 3.2 30 42-71 5-34 (322)
274 1m7g_A Adenylylsulfate kinase; 97.4 0.00015 5.3E-09 55.2 4.2 35 42-76 27-65 (211)
275 3b5x_A Lipid A export ATP-bind 97.3 0.00018 6.1E-09 63.4 4.4 45 20-64 346-393 (582)
276 1ltq_A Polynucleotide kinase; 97.3 0.00014 4.6E-09 58.5 3.3 33 42-75 4-36 (301)
277 2f6r_A COA synthase, bifunctio 97.3 0.00015 5E-09 58.0 3.3 28 42-70 77-104 (281)
278 2r6a_A DNAB helicase, replicat 97.3 0.0011 3.9E-08 56.4 9.1 37 38-74 200-241 (454)
279 1pzn_A RAD51, DNA repair and r 97.2 0.00027 9.3E-09 58.3 4.8 40 36-75 126-175 (349)
280 2iw3_A Elongation factor 3A; a 97.2 0.00022 7.6E-09 66.0 4.5 47 16-62 436-483 (986)
281 1yqt_A RNAse L inhibitor; ATP- 97.2 0.00022 7.5E-09 62.2 4.2 49 15-64 21-71 (538)
282 3aez_A Pantothenate kinase; tr 97.2 0.00019 6.5E-09 58.3 3.5 27 39-65 88-115 (312)
283 3eph_A TRNA isopentenyltransfe 97.2 0.00018 6.2E-09 60.2 3.4 30 42-71 4-33 (409)
284 3zvl_A Bifunctional polynucleo 97.2 0.00011 3.6E-09 62.2 2.0 33 42-76 260-292 (416)
285 1w4r_A Thymidine kinase; type 97.2 0.0015 5.2E-08 49.1 8.2 32 43-74 23-57 (195)
286 3b60_A Lipid A export ATP-bind 97.2 0.00019 6.5E-09 63.2 3.7 46 20-65 346-394 (582)
287 2dr3_A UPF0273 protein PH0284; 97.2 0.00051 1.7E-08 53.1 5.6 33 42-74 25-60 (247)
288 1cr0_A DNA primase/helicase; R 97.2 0.00012 3.9E-09 58.9 1.9 43 31-73 25-72 (296)
289 3gmt_A Adenylate kinase; ssgci 97.2 0.00027 9.4E-09 54.7 3.9 30 42-71 10-39 (230)
290 2dpy_A FLII, flagellum-specifi 97.2 0.00018 6.1E-09 61.2 3.0 39 28-67 145-184 (438)
291 2i3b_A HCR-ntpase, human cance 97.2 0.00025 8.7E-09 53.3 3.5 23 42-64 3-25 (189)
292 2yhs_A FTSY, cell division pro 97.2 0.00025 8.6E-09 60.9 3.9 32 33-64 285-317 (503)
293 1gtv_A TMK, thymidylate kinase 97.2 0.00012 3.9E-09 55.7 1.6 23 43-65 3-25 (214)
294 2eyu_A Twitching motility prot 97.2 0.00023 7.8E-09 56.3 3.3 23 42-64 27-49 (261)
295 2obl_A ESCN; ATPase, hydrolase 97.2 0.00021 7E-09 58.9 3.1 39 28-67 59-98 (347)
296 1x6v_B Bifunctional 3'-phospho 97.1 0.00042 1.4E-08 61.3 4.9 35 42-76 54-91 (630)
297 3hdt_A Putative kinase; struct 97.1 0.00033 1.1E-08 54.0 3.8 29 42-70 16-44 (223)
298 4eaq_A DTMP kinase, thymidylat 97.1 0.00031 1.1E-08 54.3 3.6 24 42-65 28-51 (229)
299 1j8m_F SRP54, signal recogniti 97.1 0.00066 2.2E-08 54.7 5.6 33 42-74 100-135 (297)
300 3qf4_A ABC transporter, ATP-bi 97.1 0.00018 6.2E-09 63.4 2.5 47 19-65 345-394 (587)
301 4b3f_X DNA-binding protein smu 97.1 0.00042 1.4E-08 61.8 4.6 30 42-71 207-239 (646)
302 2ius_A DNA translocase FTSK; n 97.1 0.0013 4.6E-08 56.7 7.5 35 40-74 167-208 (512)
303 2v3c_C SRP54, signal recogniti 97.1 0.00062 2.1E-08 57.7 5.2 35 41-75 100-137 (432)
304 2q6t_A DNAB replication FORK h 97.1 0.0012 4.2E-08 56.1 7.1 33 42-74 202-238 (444)
305 1sq5_A Pantothenate kinase; P- 97.0 0.00039 1.3E-08 56.2 3.8 25 41-65 80-105 (308)
306 1rj9_A FTSY, signal recognitio 97.0 0.0004 1.4E-08 56.2 3.8 23 42-64 104-126 (304)
307 1odf_A YGR205W, hypothetical 3 97.0 0.00041 1.4E-08 55.7 3.8 23 43-65 34-56 (290)
308 3euj_A Chromosome partition pr 97.0 0.00049 1.7E-08 59.0 4.4 35 30-65 19-54 (483)
309 4a82_A Cystic fibrosis transme 97.0 0.0002 6.7E-09 63.1 2.0 47 19-65 343-392 (578)
310 2yl4_A ATP-binding cassette SU 97.0 0.0004 1.4E-08 61.4 3.9 47 19-65 345-395 (595)
311 1a7j_A Phosphoribulokinase; tr 97.0 0.00023 7.8E-09 57.2 2.2 34 43-76 8-44 (290)
312 3tqf_A HPR(Ser) kinase; transf 97.0 0.00051 1.8E-08 50.6 3.8 28 36-63 12-39 (181)
313 3tqc_A Pantothenate kinase; bi 97.0 0.00041 1.4E-08 56.5 3.6 23 43-65 95-117 (321)
314 1c9k_A COBU, adenosylcobinamid 97.0 0.00041 1.4E-08 51.6 3.3 32 43-75 2-33 (180)
315 3qf4_B Uncharacterized ABC tra 97.0 0.00023 8E-09 62.9 2.3 47 19-65 358-406 (598)
316 1nlf_A Regulatory protein REPA 97.0 0.00052 1.8E-08 54.5 4.0 26 39-64 28-54 (279)
317 3b85_A Phosphate starvation-in 96.9 0.00037 1.3E-08 53.1 2.6 22 42-63 24-45 (208)
318 3e70_C DPA, signal recognition 96.9 0.00057 1.9E-08 55.8 3.8 25 40-64 128-153 (328)
319 3cmw_A Protein RECA, recombina 96.9 0.0035 1.2E-07 61.2 9.6 82 38-123 1428-1527(1706)
320 2f1r_A Molybdopterin-guanine d 96.9 0.00032 1.1E-08 51.8 1.9 24 42-65 4-27 (171)
321 1zu4_A FTSY; GTPase, signal re 96.9 0.001 3.6E-08 54.1 5.1 41 34-74 98-142 (320)
322 1g8f_A Sulfate adenylyltransfe 96.9 0.00072 2.5E-08 58.4 4.4 25 42-66 397-421 (511)
323 3sop_A Neuronal-specific septi 96.9 0.00055 1.9E-08 54.4 3.4 23 42-64 4-26 (270)
324 2ewv_A Twitching motility prot 96.9 0.00055 1.9E-08 56.9 3.3 23 42-64 138-160 (372)
325 3cr8_A Sulfate adenylyltranfer 96.9 0.00042 1.4E-08 60.5 2.6 35 42-76 371-409 (552)
326 1xjc_A MOBB protein homolog; s 96.9 0.0015 5.1E-08 48.1 5.2 31 42-72 6-39 (169)
327 1tf7_A KAIC; homohexamer, hexa 96.9 0.00063 2.2E-08 59.2 3.7 48 28-75 25-78 (525)
328 1lw7_A Transcriptional regulat 96.9 0.00059 2E-08 56.5 3.4 26 42-67 172-197 (365)
329 3io5_A Recombination and repai 96.8 0.00099 3.4E-08 54.0 4.5 79 40-120 28-126 (333)
330 3bk7_A ABC transporter ATP-bin 96.8 0.00065 2.2E-08 60.1 3.7 45 19-64 95-141 (607)
331 2axn_A 6-phosphofructo-2-kinas 96.8 0.00073 2.5E-08 58.7 3.8 34 42-75 37-73 (520)
332 1m8p_A Sulfate adenylyltransfe 96.8 0.00057 1.9E-08 60.0 3.1 35 42-76 398-436 (573)
333 2qm8_A GTPase/ATPase; G protei 96.8 0.00053 1.8E-08 56.3 2.7 34 31-64 45-79 (337)
334 2j37_W Signal recognition part 96.8 0.0032 1.1E-07 54.3 7.7 34 41-74 102-138 (504)
335 1np6_A Molybdopterin-guanine d 96.8 0.00082 2.8E-08 49.8 3.5 23 42-64 8-30 (174)
336 1ko7_A HPR kinase/phosphatase; 96.8 0.00065 2.2E-08 55.0 3.2 35 29-63 133-167 (314)
337 2ffh_A Protein (FFH); SRP54, s 96.8 0.00075 2.6E-08 57.0 3.6 59 13-74 74-135 (425)
338 2px0_A Flagellar biosynthesis 96.8 0.0015 5.3E-08 52.5 5.2 36 40-75 105-144 (296)
339 2npi_A Protein CLP1; CLP1-PCF1 96.8 0.00038 1.3E-08 59.5 1.6 31 34-64 131-162 (460)
340 2gza_A Type IV secretion syste 96.8 0.00059 2E-08 56.5 2.7 32 34-65 168-200 (361)
341 1p9r_A General secretion pathw 96.8 0.00091 3.1E-08 56.4 3.8 24 42-65 169-192 (418)
342 1m2o_B GTP-binding protein SAR 96.7 0.00092 3.1E-08 49.8 3.4 29 34-62 17-45 (190)
343 1f2t_A RAD50 ABC-ATPase; DNA d 96.7 0.0009 3.1E-08 48.2 3.2 27 38-64 21-47 (149)
344 1z6t_A APAF-1, apoptotic prote 96.7 0.00052 1.8E-08 60.3 2.2 46 5-62 124-169 (591)
345 1ls1_A Signal recognition part 96.7 0.00098 3.4E-08 53.6 3.6 40 33-73 92-134 (295)
346 2qag_B Septin-6, protein NEDD5 96.7 0.00044 1.5E-08 58.4 1.4 33 31-63 30-65 (427)
347 3thx_B DNA mismatch repair pro 96.7 0.0014 4.9E-08 60.4 4.8 33 31-63 663-696 (918)
348 1yqt_A RNAse L inhibitor; ATP- 96.7 0.0019 6.6E-08 56.3 5.3 30 35-64 306-336 (538)
349 4aby_A DNA repair protein RECN 96.7 0.00045 1.5E-08 58.0 1.3 40 26-65 46-85 (415)
350 2oap_1 GSPE-2, type II secreti 96.7 0.00053 1.8E-08 59.4 1.8 33 41-73 261-295 (511)
351 3thx_A DNA mismatch repair pro 96.7 0.0018 6.2E-08 59.9 5.3 31 32-62 653-684 (934)
352 2iw3_A Elongation factor 3A; a 96.6 0.00089 3.1E-08 62.0 2.9 36 29-64 687-723 (986)
353 1oix_A RAS-related protein RAB 96.6 0.0012 4.1E-08 49.2 3.2 23 42-64 31-53 (191)
354 4edh_A DTMP kinase, thymidylat 96.6 0.0014 4.8E-08 50.1 3.5 24 42-65 8-31 (213)
355 2c9o_A RUVB-like 1; hexameric 96.6 0.0011 3.7E-08 56.6 3.2 69 106-204 296-370 (456)
356 2j9r_A Thymidine kinase; TK1, 96.6 0.011 3.9E-07 45.0 8.5 29 45-73 33-64 (214)
357 2f9l_A RAB11B, member RAS onco 96.6 0.0013 4.6E-08 49.1 3.3 22 42-63 7-28 (199)
358 3bk7_A ABC transporter ATP-bin 96.6 0.0022 7.5E-08 56.7 5.1 30 35-64 376-406 (607)
359 3ozx_A RNAse L inhibitor; ATP 96.5 0.0014 4.9E-08 57.1 3.6 30 35-64 288-318 (538)
360 1knx_A Probable HPR(Ser) kinas 96.5 0.00071 2.4E-08 54.7 1.6 32 31-62 138-169 (312)
361 3tmk_A Thymidylate kinase; pho 96.5 0.0026 8.7E-08 48.8 4.6 27 42-68 7-33 (216)
362 3qf7_A RAD50; ABC-ATPase, ATPa 96.5 0.0016 5.4E-08 54.0 3.6 31 34-64 17-47 (365)
363 2ocp_A DGK, deoxyguanosine kin 96.5 0.0015 5.1E-08 50.7 3.3 24 42-65 4-27 (241)
364 2xxa_A Signal recognition part 96.5 0.012 4.1E-07 49.9 8.9 35 41-75 101-139 (433)
365 3v9p_A DTMP kinase, thymidylat 96.5 0.0013 4.4E-08 50.9 2.7 23 42-64 27-49 (227)
366 2qnr_A Septin-2, protein NEDD5 96.5 0.0015 5.2E-08 52.6 3.0 22 42-63 20-41 (301)
367 2o5v_A DNA replication and rep 96.5 0.0018 6E-08 53.6 3.5 35 30-64 16-50 (359)
368 2dyk_A GTP-binding protein; GT 96.4 0.0017 5.9E-08 46.3 3.0 22 42-63 3-24 (161)
369 3lv8_A DTMP kinase, thymidylat 96.4 0.0019 6.5E-08 50.2 3.4 23 42-64 29-51 (236)
370 4ag6_A VIRB4 ATPase, type IV s 96.4 0.0037 1.3E-07 52.1 5.4 34 39-72 34-70 (392)
371 1nrj_B SR-beta, signal recogni 96.4 0.0021 7.2E-08 48.7 3.6 25 40-64 12-36 (218)
372 3bh0_A DNAB-like replicative h 96.4 0.003 1E-07 51.2 4.6 33 42-74 70-105 (315)
373 2vp4_A Deoxynucleoside kinase; 96.4 0.0017 6E-08 50.0 3.0 21 43-63 23-43 (230)
374 1u8z_A RAS-related protein RAL 96.4 0.0018 6.2E-08 46.4 2.8 23 41-63 5-27 (168)
375 3ux8_A Excinuclease ABC, A sub 96.4 0.0014 4.8E-08 58.7 2.6 32 30-61 337-369 (670)
376 4i1u_A Dephospho-COA kinase; s 96.4 0.0023 7.9E-08 48.8 3.5 30 42-72 11-40 (210)
377 1bif_A 6-phosphofructo-2-kinas 96.4 0.002 7E-08 55.1 3.5 24 42-65 41-64 (469)
378 1p5z_B DCK, deoxycytidine kina 96.4 0.0008 2.7E-08 53.0 0.9 24 42-65 26-49 (263)
379 1z2a_A RAS-related protein RAB 96.4 0.0023 7.9E-08 45.9 3.3 22 42-63 7-28 (168)
380 2i1q_A DNA repair and recombin 96.4 0.0023 7.9E-08 51.9 3.6 25 39-63 96-121 (322)
381 2zej_A Dardarin, leucine-rich 96.3 0.0018 6.2E-08 47.8 2.7 21 42-62 4-24 (184)
382 2ged_A SR-beta, signal recogni 96.3 0.0026 8.8E-08 47.1 3.5 25 40-64 48-72 (193)
383 3g5u_A MCG1178, multidrug resi 96.3 0.0016 5.6E-08 62.4 2.9 47 19-65 391-441 (1284)
384 3ld9_A DTMP kinase, thymidylat 96.3 0.0026 8.9E-08 49.0 3.5 24 43-66 24-47 (223)
385 3qks_A DNA double-strand break 96.3 0.0026 9.1E-08 48.1 3.5 29 38-66 21-49 (203)
386 2ce2_X GTPase HRAS; signaling 96.3 0.0025 8.6E-08 45.5 3.2 23 42-64 5-27 (166)
387 2wji_A Ferrous iron transport 96.3 0.0025 8.5E-08 46.1 3.1 21 42-62 5-25 (165)
388 2lkc_A Translation initiation 96.3 0.0027 9.3E-08 46.1 3.3 24 39-62 7-30 (178)
389 1kao_A RAP2A; GTP-binding prot 96.3 0.0028 9.5E-08 45.3 3.3 22 42-63 5-26 (167)
390 2a5y_B CED-4; apoptosis; HET: 96.3 0.0012 4.3E-08 57.6 1.7 44 8-62 131-174 (549)
391 4tmk_A Protein (thymidylate ki 96.3 0.0028 9.5E-08 48.4 3.4 23 42-64 5-27 (213)
392 2gk6_A Regulator of nonsense t 96.2 0.0028 9.4E-08 56.3 3.8 24 41-64 196-219 (624)
393 1ek0_A Protein (GTP-binding pr 96.2 0.0026 9E-08 45.7 3.0 23 42-64 5-27 (170)
394 3g5u_A MCG1178, multidrug resi 96.2 0.0024 8.4E-08 61.2 3.6 37 29-65 1047-1084(1284)
395 3j16_B RLI1P; ribosome recycli 96.2 0.0033 1.1E-07 55.6 4.2 35 30-64 362-402 (608)
396 2gks_A Bifunctional SAT/APS ki 96.2 0.0032 1.1E-07 55.0 3.9 35 42-76 374-411 (546)
397 2wjg_A FEOB, ferrous iron tran 96.2 0.0024 8.1E-08 47.0 2.7 22 41-62 8-29 (188)
398 1tf7_A KAIC; homohexamer, hexa 96.2 0.0033 1.1E-07 54.6 4.0 36 38-73 278-317 (525)
399 1z0j_A RAB-22, RAS-related pro 96.2 0.0032 1.1E-07 45.3 3.3 24 41-64 7-30 (170)
400 1wms_A RAB-9, RAB9, RAS-relate 96.2 0.0031 1.1E-07 45.7 3.3 23 41-63 8-30 (177)
401 1w36_D RECD, exodeoxyribonucle 96.2 0.003 1E-07 55.9 3.7 25 40-64 164-188 (608)
402 1z08_A RAS-related protein RAB 96.2 0.0033 1.1E-07 45.3 3.3 22 42-63 8-29 (170)
403 1g16_A RAS-related protein SEC 96.2 0.0032 1.1E-07 45.3 3.2 22 42-63 5-26 (170)
404 3vkw_A Replicase large subunit 96.2 0.011 3.8E-07 50.1 6.8 21 42-62 163-183 (446)
405 1ky3_A GTP-binding protein YPT 96.2 0.0034 1.1E-07 45.7 3.3 23 41-63 9-31 (182)
406 3qkt_A DNA double-strand break 96.2 0.0029 9.9E-08 51.8 3.2 29 36-64 19-47 (339)
407 2nzj_A GTP-binding protein REM 96.1 0.0032 1.1E-07 45.5 3.1 21 42-62 6-26 (175)
408 1r2q_A RAS-related protein RAB 96.1 0.0038 1.3E-07 44.8 3.5 23 41-63 7-29 (170)
409 1f6b_A SAR1; gtpases, N-termin 96.1 0.0014 4.8E-08 49.1 1.1 25 38-62 23-47 (198)
410 3ux8_A Excinuclease ABC, A sub 96.1 0.0031 1.1E-07 56.4 3.5 29 29-57 32-61 (670)
411 2qag_C Septin-7; cell cycle, c 96.1 0.0022 7.6E-08 54.1 2.3 23 42-64 33-55 (418)
412 1c1y_A RAS-related protein RAP 96.1 0.0039 1.3E-07 44.7 3.3 22 42-63 5-26 (167)
413 1r8s_A ADP-ribosylation factor 96.1 0.0039 1.3E-07 44.6 3.3 22 42-63 2-23 (164)
414 4a1f_A DNAB helicase, replicat 96.1 0.0055 1.9E-07 50.2 4.5 33 42-74 48-83 (338)
415 3q85_A GTP-binding protein REM 96.1 0.0037 1.3E-07 45.0 3.2 20 42-61 4-23 (169)
416 1qhl_A Protein (cell division 96.1 0.0011 3.7E-08 51.3 0.3 23 43-65 30-52 (227)
417 3j16_B RLI1P; ribosome recycli 96.1 0.0029 9.8E-08 56.0 2.9 26 39-64 101-127 (608)
418 3bc1_A RAS-related protein RAB 96.1 0.0039 1.3E-07 45.8 3.3 23 41-63 12-34 (195)
419 2erx_A GTP-binding protein DI- 96.1 0.0038 1.3E-07 44.9 3.1 21 42-62 5-25 (172)
420 3q72_A GTP-binding protein RAD 96.1 0.0034 1.2E-07 45.0 2.9 21 42-62 4-24 (166)
421 2y8e_A RAB-protein 6, GH09086P 96.0 0.0042 1.4E-07 45.1 3.2 23 41-63 15-37 (179)
422 2gj8_A MNME, tRNA modification 96.0 0.0039 1.3E-07 45.5 3.1 22 42-63 6-27 (172)
423 3con_A GTPase NRAS; structural 96.0 0.0044 1.5E-07 45.7 3.3 23 41-63 22-44 (190)
424 2fn4_A P23, RAS-related protei 96.0 0.0043 1.5E-07 45.1 3.2 23 41-63 10-32 (181)
425 1upt_A ARL1, ADP-ribosylation 96.0 0.0046 1.6E-07 44.5 3.3 23 41-63 8-30 (171)
426 2rcn_A Probable GTPase ENGC; Y 96.0 0.0038 1.3E-07 51.5 3.1 24 42-65 217-240 (358)
427 1z0f_A RAB14, member RAS oncog 96.0 0.0046 1.6E-07 44.8 3.3 24 41-64 16-39 (179)
428 4dsu_A GTPase KRAS, isoform 2B 96.0 0.0046 1.6E-07 45.3 3.3 23 42-64 6-28 (189)
429 1m7b_A RND3/RHOE small GTP-bin 96.0 0.0045 1.5E-07 45.5 3.2 22 42-63 9-30 (184)
430 2oil_A CATX-8, RAS-related pro 96.0 0.0046 1.6E-07 45.7 3.3 23 41-63 26-48 (193)
431 2a9k_A RAS-related protein RAL 96.0 0.0047 1.6E-07 45.1 3.3 23 41-63 19-41 (187)
432 2wsm_A Hydrogenase expression/ 96.0 0.0043 1.5E-07 47.0 3.2 25 41-65 31-55 (221)
433 1u0l_A Probable GTPase ENGC; p 96.0 0.0031 1.1E-07 50.8 2.4 24 42-65 171-194 (301)
434 3p32_A Probable GTPase RV1496/ 96.0 0.0074 2.5E-07 49.7 4.8 32 42-73 81-115 (355)
435 2yv5_A YJEQ protein; hydrolase 95.9 0.0041 1.4E-07 50.1 3.1 21 43-64 168-188 (302)
436 1svi_A GTP-binding protein YSX 95.9 0.0046 1.6E-07 45.7 3.2 23 40-62 23-45 (195)
437 3tw8_B RAS-related protein RAB 95.9 0.0043 1.5E-07 45.1 3.0 22 41-62 10-31 (181)
438 3k53_A Ferrous iron transport 95.9 0.0037 1.3E-07 49.3 2.8 23 41-63 4-26 (271)
439 2bme_A RAB4A, RAS-related prot 95.9 0.0048 1.6E-07 45.2 3.2 23 41-63 11-33 (186)
440 2hxs_A RAB-26, RAS-related pro 95.9 0.0046 1.6E-07 44.9 3.1 21 42-62 8-28 (178)
441 2efe_B Small GTP-binding prote 95.9 0.005 1.7E-07 44.8 3.3 23 41-63 13-35 (181)
442 3t1o_A Gliding protein MGLA; G 95.9 0.0051 1.7E-07 45.4 3.3 24 41-64 15-38 (198)
443 3kkq_A RAS-related protein M-R 95.9 0.0051 1.8E-07 44.9 3.3 23 41-63 19-41 (183)
444 3ozx_A RNAse L inhibitor; ATP 95.9 0.0036 1.2E-07 54.5 2.8 25 40-64 24-49 (538)
445 1pui_A ENGB, probable GTP-bind 95.9 0.0022 7.5E-08 48.2 1.3 22 42-63 28-49 (210)
446 2g6b_A RAS-related protein RAB 95.9 0.0052 1.8E-07 44.7 3.3 23 41-63 11-33 (180)
447 3ihw_A Centg3; RAS, centaurin, 95.9 0.0052 1.8E-07 45.4 3.3 23 41-63 21-43 (184)
448 3pqc_A Probable GTP-binding pr 95.9 0.0045 1.6E-07 45.6 3.0 23 41-63 24-46 (195)
449 3ice_A Transcription terminati 95.9 0.0051 1.8E-07 51.2 3.5 24 41-64 175-198 (422)
450 3clv_A RAB5 protein, putative; 95.9 0.0052 1.8E-07 45.5 3.3 22 42-63 9-30 (208)
451 1vt4_I APAF-1 related killer D 95.9 0.0029 1E-07 59.1 2.1 45 5-62 128-172 (1221)
452 2wjy_A Regulator of nonsense t 95.9 0.0054 1.8E-07 56.0 3.8 24 41-64 372-395 (800)
453 1mh1_A RAC1; GTP-binding, GTPa 95.9 0.0057 1.9E-07 44.7 3.3 22 42-63 7-28 (186)
454 2gf9_A RAS-related protein RAB 95.8 0.0057 1.9E-07 45.1 3.3 22 42-63 24-45 (189)
455 2cxx_A Probable GTP-binding pr 95.8 0.0049 1.7E-07 45.3 3.0 22 42-63 3-24 (190)
456 1tq4_A IIGP1, interferon-induc 95.8 0.0033 1.1E-07 52.9 2.2 23 42-64 71-93 (413)
457 3t5g_A GTP-binding protein RHE 95.8 0.0054 1.8E-07 44.7 3.1 22 41-62 7-28 (181)
458 3tkl_A RAS-related protein RAB 95.8 0.0059 2E-07 45.1 3.3 22 42-63 18-39 (196)
459 2fg5_A RAB-22B, RAS-related pr 95.8 0.0057 2E-07 45.3 3.2 23 41-63 24-46 (192)
460 3dz8_A RAS-related protein RAB 95.8 0.0058 2E-07 45.2 3.2 24 41-64 24-47 (191)
461 1z06_A RAS-related protein RAB 95.8 0.0051 1.7E-07 45.4 2.9 23 41-63 21-43 (189)
462 3c5c_A RAS-like protein 12; GD 95.8 0.0062 2.1E-07 45.0 3.3 22 42-63 23-44 (187)
463 3bwd_D RAC-like GTP-binding pr 95.8 0.0064 2.2E-07 44.3 3.3 23 41-63 9-31 (182)
464 2atv_A RERG, RAS-like estrogen 95.8 0.0063 2.2E-07 45.2 3.3 23 41-63 29-51 (196)
465 2bov_A RAla, RAS-related prote 95.8 0.0064 2.2E-07 45.3 3.3 23 41-63 15-37 (206)
466 2hf9_A Probable hydrogenase ni 95.7 0.0066 2.3E-07 46.2 3.4 24 41-64 39-62 (226)
467 2a5j_A RAS-related protein RAB 95.7 0.0066 2.3E-07 44.9 3.3 22 42-63 23-44 (191)
468 1yrb_A ATP(GTP)binding protein 95.7 0.012 4.1E-07 45.8 5.0 32 42-73 16-49 (262)
469 1e69_A Chromosome segregation 95.7 0.0045 1.5E-07 50.2 2.5 30 35-64 19-48 (322)
470 3bgw_A DNAB-like replicative h 95.7 0.0098 3.3E-07 50.6 4.7 33 42-74 199-234 (444)
471 1zd9_A ADP-ribosylation factor 95.7 0.0069 2.3E-07 44.7 3.3 23 41-63 23-45 (188)
472 3oes_A GTPase rhebl1; small GT 95.7 0.0065 2.2E-07 45.3 3.2 24 41-64 25-48 (201)
473 1vg8_A RAS-related protein RAB 95.7 0.0067 2.3E-07 45.3 3.3 24 41-64 9-32 (207)
474 3reg_A RHO-like small GTPase; 95.7 0.0069 2.3E-07 44.9 3.3 23 41-63 24-46 (194)
475 1x3s_A RAS-related protein RAB 95.7 0.0069 2.4E-07 44.6 3.3 23 41-63 16-38 (195)
476 3auy_A DNA double-strand break 95.7 0.0057 2E-07 50.7 3.1 28 35-62 20-47 (371)
477 2p5s_A RAS and EF-hand domain 95.7 0.0069 2.4E-07 45.1 3.3 23 41-63 29-51 (199)
478 1nij_A Hypothetical protein YJ 95.7 0.0049 1.7E-07 50.0 2.6 23 42-64 6-28 (318)
479 2ew1_A RAS-related protein RAB 95.7 0.0067 2.3E-07 45.6 3.2 23 41-63 27-49 (201)
480 1xti_A Probable ATP-dependent 95.7 0.15 5.3E-06 41.7 11.8 19 41-59 46-64 (391)
481 2iwr_A Centaurin gamma 1; ANK 95.7 0.0051 1.8E-07 44.7 2.5 23 41-63 8-30 (178)
482 1gwn_A RHO-related GTP-binding 95.7 0.0069 2.3E-07 45.6 3.2 23 41-63 29-51 (205)
483 3lxx_A GTPase IMAP family memb 95.7 0.0065 2.2E-07 46.9 3.1 23 41-63 30-52 (239)
484 2bcg_Y Protein YP2, GTP-bindin 95.7 0.007 2.4E-07 45.3 3.2 22 42-63 10-31 (206)
485 1zbd_A Rabphilin-3A; G protein 95.7 0.0068 2.3E-07 45.2 3.2 22 42-63 10-31 (203)
486 2fh5_B SR-beta, signal recogni 95.6 0.0079 2.7E-07 45.3 3.4 25 40-64 7-31 (214)
487 3hjn_A DTMP kinase, thymidylat 95.6 0.014 4.9E-07 43.8 4.8 29 43-71 3-34 (197)
488 2gf0_A GTP-binding protein DI- 95.6 0.0075 2.6E-07 44.6 3.2 23 41-63 9-31 (199)
489 1fzq_A ADP-ribosylation factor 95.6 0.0067 2.3E-07 44.5 2.9 23 41-63 17-39 (181)
490 2xzl_A ATP-dependent helicase 95.6 0.0078 2.7E-07 55.0 3.8 21 41-61 376-396 (802)
491 3cph_A RAS-related protein SEC 95.6 0.008 2.7E-07 45.0 3.3 23 41-63 21-43 (213)
492 2p67_A LAO/AO transport system 95.6 0.0088 3E-07 49.0 3.7 23 42-64 58-80 (341)
493 2www_A Methylmalonic aciduria 95.6 0.008 2.7E-07 49.4 3.5 23 42-64 76-98 (349)
494 4hlc_A DTMP kinase, thymidylat 95.6 0.0089 3E-07 45.3 3.5 28 43-70 5-34 (205)
495 1wb9_A DNA mismatch repair pro 95.6 0.0068 2.3E-07 55.3 3.3 32 31-63 598-630 (800)
496 1ksh_A ARF-like protein 2; sma 95.5 0.0075 2.6E-07 44.2 3.0 22 41-62 19-40 (186)
497 1moz_A ARL1, ADP-ribosylation 95.5 0.005 1.7E-07 44.9 2.0 21 41-61 19-39 (183)
498 2orv_A Thymidine kinase; TP4A 95.5 0.071 2.4E-06 41.1 8.4 30 44-73 23-55 (234)
499 1zj6_A ADP-ribosylation factor 95.5 0.0082 2.8E-07 44.1 3.1 22 41-62 17-38 (187)
500 4bas_A ADP-ribosylation factor 95.5 0.0065 2.2E-07 45.0 2.5 23 40-62 17-39 (199)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.1e-33 Score=236.36 Aligned_cols=173 Identities=24% Similarity=0.347 Sum_probs=147.6
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD 84 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~ 84 (225)
+.|+|++++|+.|.+.+.+++.++..+...++.. ++++|||||||||||++|+++|++++.+|+.++++++.+ +|.|+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~-prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~s-k~vGe 225 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQ-PKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQ-KYIGE 225 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCC-CCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSC-SSTTH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCC-CCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhc-cccch
Confidence 4689999999999999999999888888777754 469999999999999999999999999999999999985 79998
Q ss_pred cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccC-CCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCc
Q psy5910 85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQ 163 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~ 163 (225)
. +..++.+|..+ +...|+||||||+|++++.+.... +.+....++.+.|+..||+... ..+
T Consensus 226 s-e~~vr~lF~~A----r~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~-----------~~~-- 287 (405)
T 4b4t_J 226 G-SRMVRELFVMA----REHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFET-----------SKN-- 287 (405)
T ss_dssp H-HHHHHHHHHHH----HHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTC-----------CCC--
T ss_pred H-HHHHHHHHHHH----HHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCC-----------CCC--
Confidence 7 77888999887 667899999999999998875543 2233445677889999987531 223
Q ss_pred eeEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910 164 VFNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN 204 (225)
Q Consensus 164 ~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~ 204 (225)
+++|+|||. ++.||+|++| |||++|.++.|+.++
T Consensus 288 V~vIaATNr-------pd~LDpAllRpGRfD~~I~i~lPd~~~ 323 (405)
T 4b4t_J 288 IKIIMATNR-------LDILDPALLRPGRIDRKIEFPPPSVAA 323 (405)
T ss_dssp EEEEEEESC-------SSSSCHHHHSTTSSCCEEECCCCCHHH
T ss_pred eEEEeccCC-------hhhCCHhHcCCCcCceEEEcCCcCHHH
Confidence 999999999 7799999999 999999999999876
No 2
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.3e-32 Score=230.59 Aligned_cols=173 Identities=22% Similarity=0.302 Sum_probs=146.4
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD 84 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~ 84 (225)
+.|+|++++|+.|.+.+.+++.++..+...++.. +++||||||||||||++|+++|++++.+|+.++++++.+ +|.|+
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~-prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~s-k~vGe 259 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKP-PKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQ-KYLGD 259 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCC-CSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCC-SSSSH
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCC-CCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhh-ccCch
Confidence 4579999999999999999888888888777754 469999999999999999999999999999999999985 79998
Q ss_pred cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccC-CCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCc
Q psy5910 85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQ 163 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~ 163 (225)
. +..++.+|..+ +...|+||||||+|.+...|.... +.+....++...|+..||+... ..+
T Consensus 260 s-ek~ir~lF~~A----r~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~-----------~~~-- 321 (437)
T 4b4t_I 260 G-PRLCRQIFKVA----GENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDD-----------RGD-- 321 (437)
T ss_dssp H-HHHHHHHHHHH----HHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCC-----------SSS--
T ss_pred H-HHHHHHHHHHH----HhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCC-----------CCC--
Confidence 7 77888888876 667899999999999999886544 2333445567778888886431 122
Q ss_pred eeEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910 164 VFNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN 204 (225)
Q Consensus 164 ~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~ 204 (225)
+++|+|||. ++.||+|++| |||++|.|+.|+.++
T Consensus 322 ViVIaATNr-------pd~LDpALlRpGRfD~~I~v~lPd~~~ 357 (437)
T 4b4t_I 322 VKVIMATNK-------IETLDPALIRPGRIDRKILFENPDLST 357 (437)
T ss_dssp EEEEEEESC-------STTCCTTSSCTTTEEEEECCCCCCHHH
T ss_pred EEEEEeCCC-------hhhcCHHHhcCCceeEEEEcCCcCHHH
Confidence 999999999 7799999999 999999999999876
No 3
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.2e-32 Score=231.52 Aligned_cols=173 Identities=20% Similarity=0.312 Sum_probs=145.2
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD 84 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~ 84 (225)
+.|+|++++|+.|.+.+..++.++..+...++.. ++++|||||||||||++|+++|++++.+|+.++++++.+ +|.|.
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~-prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~-~~vGe 258 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRA-PKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQ-MYIGE 258 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCC-CCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCS-SCSSH
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCC-CCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhh-cccch
Confidence 5679999999999999999988888888777754 469999999999999999999999999999999999985 69998
Q ss_pred cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccC-CCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCc
Q psy5910 85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQ 163 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~ 163 (225)
. ++.++.+|..+ +...|+||||||+|.+...|.... +.......+...|+..||+... ..+
T Consensus 259 s-e~~ir~lF~~A----~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~-----------~~~-- 320 (434)
T 4b4t_M 259 G-AKLVRDAFALA----KEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSS-----------DDR-- 320 (434)
T ss_dssp H-HHHHHHHHHHH----HHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCS-----------SCS--
T ss_pred H-HHHHHHHHHHH----HhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCC-----------CCC--
Confidence 7 67888888876 667899999999999998875443 2222334466778888887532 122
Q ss_pred eeEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910 164 VFNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN 204 (225)
Q Consensus 164 ~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~ 204 (225)
+++|+|||. ++.||+|++| |||++|.|+.|+.++
T Consensus 321 ViVIaaTNr-------p~~LD~AllRpGRfD~~I~i~lPd~~~ 356 (434)
T 4b4t_M 321 VKVLAATNR-------VDVLDPALLRSGRLDRKIEFPLPSEDS 356 (434)
T ss_dssp SEEEEECSS-------CCCCCTTTCSTTSEEEEEECCCCCHHH
T ss_pred EEEEEeCCC-------chhcCHhHhcCCceeEEEEeCCcCHHH
Confidence 899999999 7799999999 999999999999876
No 4
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.6e-32 Score=230.33 Aligned_cols=173 Identities=22% Similarity=0.303 Sum_probs=146.0
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD 84 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~ 84 (225)
+.|+|++++|+.|.+.+.+++.++..+...++. +++++|||||||||||++|+++|++++.+|+.++++++.+ +|.|+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~-~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~s-k~~Ge 258 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIK-PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD-KYIGE 258 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCC-CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCC-SSSSH
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCC-CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhcc-ccchH
Confidence 467999999999999999999888888877775 4569999999999999999999999999999999999985 69998
Q ss_pred cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccC-CCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCc
Q psy5910 85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQ 163 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~ 163 (225)
. ...++.+|..+ ....|+||||||+|.++..|.... +.+.....+.+.||..||+... ..+
T Consensus 259 s-e~~ir~~F~~A----~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~-----------~~~-- 320 (437)
T 4b4t_L 259 S-ARIIREMFAYA----KEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDN-----------LGQ-- 320 (437)
T ss_dssp H-HHHHHHHHHHH----HHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSC-----------TTS--
T ss_pred H-HHHHHHHHHHH----HhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccC-----------CCC--
Confidence 6 67788888876 567899999999999998876543 2333345567789999997532 122
Q ss_pred eeEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910 164 VFNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN 204 (225)
Q Consensus 164 ~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~ 204 (225)
+++|+|||. ++.||+|++| |||+.|.|+.|+.+.
T Consensus 321 vivI~ATNr-------p~~LDpAllRpGRfD~~I~i~lPd~~~ 356 (437)
T 4b4t_L 321 TKIIMATNR-------PDTLDPALLRPGRLDRKVEIPLPNEAG 356 (437)
T ss_dssp SEEEEEESS-------TTSSCTTTTSTTSEEEEECCCCCCHHH
T ss_pred eEEEEecCC-------chhhCHHHhCCCccceeeecCCcCHHH
Confidence 899999999 7799999999 699999999999876
No 5
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8e-32 Score=227.83 Aligned_cols=173 Identities=21% Similarity=0.278 Sum_probs=144.8
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD 84 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~ 84 (225)
+.|+|++++|+.|.+.+.+++.++..+...++. ++++||||||||||||++|+++|++++.+|+.++++.+.+ +|.|+
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~-pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~s-k~vGe 286 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGID-PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ-KYVGE 286 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCC-CCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCC-CSSSH
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCC-CCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhc-ccCCH
Confidence 468999999999999998888888888777775 4569999999999999999999999999999999999986 69998
Q ss_pred cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccC-CCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCc
Q psy5910 85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQ 163 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~ 163 (225)
. ++.++.+|..+ +...|+||||||+|.+...|.... +.......+...|+..|++... ..+
T Consensus 287 s-ek~ir~lF~~A----r~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~-----------~~~-- 348 (467)
T 4b4t_H 287 G-ARMVRELFEMA----RTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP-----------RGN-- 348 (467)
T ss_dssp H-HHHHHHHHHHH----HHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC-----------TTT--
T ss_pred H-HHHHHHHHHHH----HhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC-----------CCc--
Confidence 7 67788888876 667899999999999998875543 2233334566778888886431 122
Q ss_pred eeEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910 164 VFNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN 204 (225)
Q Consensus 164 ~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~ 204 (225)
+++|+|||. ++.||+|++| |||+.|.|+.|+.++
T Consensus 349 ViVIaATNr-------pd~LDpALlRpGRFD~~I~i~lPd~~~ 384 (467)
T 4b4t_H 349 IKVMFATNR-------PNTLDPALLRPGRIDRKVEFSLPDLEG 384 (467)
T ss_dssp EEEEEECSC-------TTSBCHHHHSTTTCCEEECCCCCCHHH
T ss_pred EEEEeCCCC-------cccCChhhhccccccEEEEeCCcCHHH
Confidence 999999999 7799999999 999999999999876
No 6
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8.8e-32 Score=227.63 Aligned_cols=173 Identities=25% Similarity=0.370 Sum_probs=146.5
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD 84 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~ 84 (225)
+.|+|++++|+.|.+.+..+..++..+...++.. ++++|||||||||||++|+++|+.++.+|+.++++.+.+ +|.|.
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~-prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~-~~~Ge 249 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDP-PRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVH-KYLGE 249 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCC-CCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCC-SSCSH
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCC-CceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhc-cccch
Confidence 5689999999999999998888888888777754 469999999999999999999999999999999999875 69998
Q ss_pred cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccC-CCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCc
Q psy5910 85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQ 163 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~ 163 (225)
. ...++.+|..+ +...|+|+||||+|.+...|.... +.+....++.+.|+..||+... ..+
T Consensus 250 ~-e~~ir~lF~~A----~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~-----------~~~-- 311 (428)
T 4b4t_K 250 G-PRMVRDVFRLA----RENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQ-----------STN-- 311 (428)
T ss_dssp H-HHHHHHHHHHH----HHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCS-----------SCS--
T ss_pred h-HHHHHHHHHHH----HHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCC-----------CCC--
Confidence 7 67788888876 567899999999999998885544 3344456788899999998532 122
Q ss_pred eeEEecCcceeeccCccccHHHHHHh--hcccccccc-cccccc
Q psy5910 164 VFNIDTTNILFIAGGAFSGIENFIIN--RINQETNFL-EKLNNN 204 (225)
Q Consensus 164 ~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~-~~~~~~ 204 (225)
+++|+|||. ++.||+|++| |||++|.|| .|+.++
T Consensus 312 v~vI~aTN~-------~~~LD~AllRpGRfd~~I~~p~lPd~~~ 348 (428)
T 4b4t_K 312 VKVIMATNR-------ADTLDPALLRPGRLDRKIEFPSLRDRRE 348 (428)
T ss_dssp EEEEEEESC-------SSSCCHHHHSSSSEEEEEECCSSCCHHH
T ss_pred EEEEEecCC-------hhhcChhhhcCCcceEEEEcCCCCCHHH
Confidence 899999999 7799999999 999999997 677655
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.96 E-value=1.7e-29 Score=227.43 Aligned_cols=173 Identities=21% Similarity=0.328 Sum_probs=135.4
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD 84 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~ 84 (225)
+.|+|++++++.|.+.+.++..++..+...+.. +++++|||||||||||++|+++|++++.+|+.++++++.+ +|.|+
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~-~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s-~~vGe 554 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMT-PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT-MWFGE 554 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCC-CCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHT-TTCSS
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCC-CCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhc-cccch
Confidence 357899999999999999888888777777764 4468999999999999999999999999999999999885 79999
Q ss_pred cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccC-CCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCc
Q psy5910 85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQ 163 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~ 163 (225)
. ++.++.+|..+ +...||||||||+|++.+.|+... +.....+++.+.||..||+... ..+
T Consensus 555 s-e~~vr~lF~~A----r~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~-----------~~~-- 616 (806)
T 3cf2_A 555 S-EANVREIFDKA----RQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST-----------KKN-- 616 (806)
T ss_dssp C-HHHHHHHHHHH----HTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCS-----------SSS--
T ss_pred H-HHHHHHHHHHH----HHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCC-----------CCC--
Confidence 8 77899999887 567899999999999998886432 2334456789999999998542 123
Q ss_pred eeEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910 164 VFNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN 204 (225)
Q Consensus 164 ~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~ 204 (225)
+++|+|||. ++.||+|++| ||++.|+++.|+.+.
T Consensus 617 V~vi~aTN~-------p~~lD~AllRpgRfd~~i~v~lPd~~~ 652 (806)
T 3cf2_A 617 VFIIGATNR-------PDIIDPAILRPGRLDQLIYIPLPDEKS 652 (806)
T ss_dssp EEEECC-CC-------SSSSCHHHHSTTTSCCEEEC-----CH
T ss_pred EEEEEeCCC-------chhCCHhHcCCCcceEEEEECCcCHHH
Confidence 999999999 6699999999 999999999999876
No 8
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.95 E-value=5.1e-30 Score=214.66 Aligned_cols=220 Identities=53% Similarity=0.880 Sum_probs=150.5
Q ss_pred CcceeechhhHHhhheeeeEecccceEee-cccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCc
Q psy5910 3 LDRHIIGQHETKKIVSVGVYNHYKRLFLL-KSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGY 81 (225)
Q Consensus 3 l~~~i~G~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~ 81 (225)
|++.|+||+.+++.+..++...+.+.... .......+..++||+||||||||++|+++|+.++.+++.+++..+...+|
T Consensus 13 l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~ 92 (363)
T 3hws_A 13 LDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGY 92 (363)
T ss_dssp HHHHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHH
T ss_pred HHhhccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhccccc
Confidence 56779999999999998885444332211 11222235679999999999999999999999999999999998877678
Q ss_pred cCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccC-CCCCChHHHHHHHHHHHhcCCcCccccccccCCCC
Q psy5910 82 VGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQ 160 (225)
Q Consensus 82 ~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~ 160 (225)
.|......++.++..+.+.+....++||||||+|++.+.++... +.+.+++++++.|+++|++....++..+++..+..
T Consensus 93 ~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~ 172 (363)
T 3hws_A 93 VGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQ 172 (363)
T ss_dssp HHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC---------------
T ss_pred ccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCC
Confidence 88766677788887776666677899999999999998765443 34445556999999999966555555566655555
Q ss_pred CCceeEEecCcceeeccCccccHHHHHHhhccc--ccccccccccc------chhcccCChhHHHHccCCCC
Q psy5910 161 NPQVFNIDTTNILFIAGGAFSGIENFIINRINQ--ETNFLEKLNNN------YNLICETNTEDLINFGIIPV 224 (225)
Q Consensus 161 ~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~--~i~~~~~~~~~------~~l~~~~~~~~l~~~~~~~~ 224 (225)
+ +++|+|||.+||+++++++++..+.+|+.. .++|....... ..+...+.++++.++++.|+
T Consensus 173 ~--~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~ 242 (363)
T 3hws_A 173 E--FLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPE 242 (363)
T ss_dssp ---CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHH
T ss_pred c--eEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHH
Confidence 5 889999999999999999999999988765 27776654332 35566666666666555544
No 9
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.95 E-value=2.9e-29 Score=210.99 Aligned_cols=221 Identities=49% Similarity=0.804 Sum_probs=143.3
Q ss_pred CCcceeechhhHHhhheeeeEecccceEee----------------cccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910 2 ELDRHIIGQHETKKIVSVGVYNHYKRLFLL----------------KSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 2 ~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~----------------~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~ 65 (225)
.|++.|+||+++++.|..++..++.+.+.. ...+...+..++||+||||||||++|+++|+.++
T Consensus 18 ~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 18 VLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp HHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHhhHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 367889999999999998875444332210 0001123456899999999999999999999999
Q ss_pred CCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccC-CCCCChHHHHHHHHHHHhc
Q psy5910 66 VPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEG 144 (225)
Q Consensus 66 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~~~Ll~~l~~ 144 (225)
.+++.+++..+...+|.|......+...+....+.+....++|+||||++++...+.... +.+...+.+++.|+++|++
T Consensus 98 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~ 177 (376)
T 1um8_A 98 IPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEG 177 (376)
T ss_dssp CCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHC
T ss_pred CCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhc
Confidence 999999999887667888766666777776665555667899999999999988754332 3444556689999999997
Q ss_pred CCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccc-cccccccccc---chhcccCChhHHHHcc
Q psy5910 145 VNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQE-TNFLEKLNNN---YNLICETNTEDLINFG 220 (225)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~-i~~~~~~~~~---~~l~~~~~~~~l~~~~ 220 (225)
....++..++...+..+ ++++.|+|.+||++++++.+++++.+||... ++|+.+..+. ..+.+++.++++.+.+
T Consensus 178 ~~~~~~~~~~~~~~~~~--~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 255 (376)
T 1um8_A 178 SLVNIPPKGGRKHPEGN--FIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYG 255 (376)
T ss_dssp CEEC-----------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTT
T ss_pred cceecccccccccCCcc--eEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcC
Confidence 66566666666655555 8999999999999999999999999999865 8888776531 3455556666665555
Q ss_pred CCCC
Q psy5910 221 IIPV 224 (225)
Q Consensus 221 ~~~~ 224 (225)
+.|+
T Consensus 256 ~~p~ 259 (376)
T 1um8_A 256 LIPE 259 (376)
T ss_dssp CCHH
T ss_pred CChH
Confidence 5543
No 10
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.94 E-value=3.1e-28 Score=219.34 Aligned_cols=171 Identities=23% Similarity=0.338 Sum_probs=145.5
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD 84 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~ 84 (225)
+.|+|++++++.|++.+.+++.++..+...+.. ++++||||||||||||++|+++|++++.+++.+++.++.+ +|.|+
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~-~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s-k~~ge 281 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVK-PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS-KLAGE 281 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCC-CCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS-SCTTH
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCC-CCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhc-ccchH
Confidence 458999999999999998888888888877775 4469999999999999999999999999999999999875 68887
Q ss_pred cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910 85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV 164 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~ 164 (225)
. +..++.+|..+ ....|+||||||+|.+.++++... .....++.+.|+..|++.... .++
T Consensus 282 s-e~~lr~lF~~A----~~~~PsIIfIDEiDal~~~r~~~~--~~~~~riv~~LL~~mdg~~~~-------------~~V 341 (806)
T 3cf2_A 282 S-ESNLRKAFEEA----EKNAPAIIFIDELDAIAPKREKTH--GEVERRIVSQLLTLMDGLKQR-------------AHV 341 (806)
T ss_dssp H-HHHHHHHHHHH----TTSCSEEEEEESGGGTCCTTTTCC--CTTHHHHHHHHHTHHHHCCGG-------------GCE
T ss_pred H-HHHHHHHHHHH----HHcCCeEEEEehhcccccccCCCC--ChHHHHHHHHHHHHHhccccc-------------CCE
Confidence 6 77788888876 566899999999999998875532 334567889999999975321 128
Q ss_pred eEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910 165 FNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN 204 (225)
Q Consensus 165 ~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~ 204 (225)
++|++||. ++.||++++| ||++.|.++.|+.++
T Consensus 342 ~VIaaTN~-------~d~LD~ALrR~GRFd~~I~i~~Pd~~~ 376 (806)
T 3cf2_A 342 IVMAATNR-------PNSIDPALRRFGRFDREVDIGIPDATG 376 (806)
T ss_dssp EEEEECSS-------TTTSCTTTTSTTSSCEEEECCCCCHHH
T ss_pred EEEEecCC-------hhhcCHHHhCCcccceEEecCCCCHHH
Confidence 99999999 7799999999 999999999999866
No 11
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.92 E-value=1.5e-25 Score=184.56 Aligned_cols=171 Identities=20% Similarity=0.336 Sum_probs=134.3
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh-CCCeEEeccCcccccCccC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII-NVPIIVVDATSFTEAGYVG 83 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~-~~~~~~~~~~~~~~~~~~g 83 (225)
+.|+|++++++.|.+.+.++..++..... ...+.+++||+||||||||++|+++|+.+ +.+++.+++.++.. .|.|
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~--~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~-~~~g 88 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTG--KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS-KWLG 88 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCT--TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCC-SSCC
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhC--CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHh-hhhh
Confidence 45799999999999988766655444332 12455799999999999999999999999 88999999998875 5788
Q ss_pred CcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCc
Q psy5910 84 DDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQ 163 (225)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~ 163 (225)
.. ...++.+|..+ ....++||||||+|.+.+.+... ......++.+.|+..|++.... ..+
T Consensus 89 ~~-~~~~~~lf~~a----~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~ld~~~~~----------~~~-- 149 (322)
T 1xwi_A 89 ES-EKLVKNLFQLA----RENKPSIIFIDEIDSLCGSRSEN--ESEAARRIKTEFLVQMQGVGVD----------NDG-- 149 (322)
T ss_dssp SC-HHHHHHHHHHH----HHTSSEEEEEETTTGGGCCSSSC--CTTHHHHHHHHHHHHHHCSSSC----------CTT--
T ss_pred HH-HHHHHHHHHHH----HhcCCcEEEeecHHHhccccccc--cchHHHHHHHHHHHHHhccccc----------CCC--
Confidence 76 66677777665 45678999999999998876443 1233456788899999875311 122
Q ss_pred eeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 164 VFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 164 ~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
+++|++||. ++.+|++++|||+..+.++.|+.+.
T Consensus 150 v~vI~atn~-------~~~ld~al~rRf~~~i~i~~P~~~~ 183 (322)
T 1xwi_A 150 ILVLGATNI-------PWVLDSAIRRRFEKRIYIPLPEPHA 183 (322)
T ss_dssp EEEEEEESC-------TTTSCHHHHHTCCEEEECCCCCHHH
T ss_pred EEEEEecCC-------cccCCHHHHhhcCeEEEeCCcCHHH
Confidence 899999999 6689999999999999999998765
No 12
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.92 E-value=1.4e-25 Score=184.83 Aligned_cols=171 Identities=23% Similarity=0.341 Sum_probs=131.5
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD 84 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~ 84 (225)
+.|+|++++++.|.+.+..+...+...... ..+..++||+||||||||++|+++|+.++.+++.+++.++.. .|.|.
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~--~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~-~~~g~ 94 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGN--RKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS-KWMGE 94 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTT--CCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHT-TTGGG
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcC--CCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhh-cccch
Confidence 357999999999999886665544433321 234568999999999999999999999999999999988864 57776
Q ss_pred cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910 85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV 164 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~ 164 (225)
. ...++.+|..+ ....++||||||+|.+...+... ......++++.|+..|++... .... +
T Consensus 95 ~-~~~~~~~f~~a----~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~l~~~~~----------~~~~--v 155 (322)
T 3eie_A 95 S-EKLVKQLFAMA----RENKPSIIFIDQVDALTGTRGEG--ESEASRRIKTELLVQMNGVGN----------DSQG--V 155 (322)
T ss_dssp H-HHHHHHHHHHH----HHTSSEEEEEECGGGGSCC--------CCTHHHHHHHHHHHGGGGT----------SCCC--E
T ss_pred H-HHHHHHHHHHH----HhcCCeEEEechhhhhhccCCCC--cchHHHHHHHHHHHHhccccc----------cCCc--e
Confidence 5 56677777665 45678999999999999876432 223446688999999986421 1223 8
Q ss_pred eEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 165 FNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 165 ~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
++|+|||. ++.+|++++|||+..+.++.|+.+.
T Consensus 156 ~vi~atn~-------~~~ld~al~~Rf~~~i~~~~p~~~~ 188 (322)
T 3eie_A 156 LVLGATNI-------PWQLDSAIRRRFERRIYIPLPDLAA 188 (322)
T ss_dssp EEEEEESC-------GGGSCHHHHHHCCEEEECCCCCHHH
T ss_pred EEEEecCC-------hhhCCHHHHcccCeEEEeCCCCHHH
Confidence 99999999 6789999999999999999998876
No 13
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.92 E-value=7.5e-26 Score=191.90 Aligned_cols=189 Identities=41% Similarity=0.641 Sum_probs=143.3
Q ss_pred CCcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCc
Q psy5910 2 ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGY 81 (225)
Q Consensus 2 ~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~ 81 (225)
.|++.|+||+++|+.|..++.+++++...........+.+++||+||||||||++|+++|+.++.+++.++++.+.+.+|
T Consensus 12 ~Ld~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~ 91 (444)
T 1g41_A 12 ELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGY 91 (444)
T ss_dssp HHHTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccce
Confidence 47889999999999999998777766544444444345679999999999999999999999999999999988877679
Q ss_pred cCCcHHHHHHHHHHhcc---------------------------------------------------------------
Q psy5910 82 VGDDVESIIQKLLHECD--------------------------------------------------------------- 98 (225)
Q Consensus 82 ~g~~~~~~~~~~~~~~~--------------------------------------------------------------- 98 (225)
.|.+....++.++..+.
T Consensus 92 vG~d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~~~v~a~~TN~~~~ld~aL~rggr~D~ 171 (444)
T 1g41_A 92 VGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDK 171 (444)
T ss_dssp CCCCTHHHHHHHHHHHHHHHHHHHHHSCC---------------------------------------------------
T ss_pred eeccHHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHcCCCcce
Confidence 99765665555543320
Q ss_pred -------------h----------------------------------------------------------hhhhh-CC
Q psy5910 99 -------------Y----------------------------------------------------------DVELA-EQ 106 (225)
Q Consensus 99 -------------~----------------------------------------------------------~~~~~-~~ 106 (225)
. .++.. ..
T Consensus 172 ~i~i~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~l~~~e~~~l~~~~~~~~~ai~~ae~~ 251 (444)
T 1g41_A 172 EIEIDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQKAIDAVEQN 251 (444)
T ss_dssp ------------------------------------------------------CCGGGSCSSCCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHHHHHHHHHHHccCHHHHHHHHHHHhccC
Confidence 0 00122 46
Q ss_pred CEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccC-----ccc
Q psy5910 107 SIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGG-----AFS 181 (225)
Q Consensus 107 ~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~-----~~~ 181 (225)
+++++||+|++....++ .+.+.+++.+|++||++||+..... + +..+.|+|++|||++ ++.
T Consensus 252 ~il~~DEidki~~~~~~-~~~D~s~egvq~aLL~~le~~~~~~-----------~--~~~~d~~~ilfI~~gaf~~~~~~ 317 (444)
T 1g41_A 252 GIVFIDEIDKICKKGEY-SGADVSREGVQRDLLPLVEGSTVST-----------K--HGMVKTDHILFIASGAFQVARPS 317 (444)
T ss_dssp CEEEEETGGGGSCCSSC-SSSHHHHHHHHHHHHHHHHCCEEEE-----------T--TEEEECTTCEEEEEECCSSCCGG
T ss_pred CeeeHHHHHHHhhccCC-CCCCchHHHHHHHHHHHhccccccc-----------c--cceecCCcEEEEeccccccCChh
Confidence 79999999999976442 3567788889999999999754321 1 466899999999998 555
Q ss_pred cHHHHHHhhcccccccccccccc
Q psy5910 182 GIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 182 ~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
++-+.++.||...+.|+..+.+.
T Consensus 318 dlipel~~R~~i~i~l~~lt~~e 340 (444)
T 1g41_A 318 DLIPELQGRLPIRVELTALSAAD 340 (444)
T ss_dssp GSCHHHHTTCCEEEECCCCCHHH
T ss_pred hcchHHhcccceeeeCCCCCHHH
Confidence 66688999999999999888876
No 14
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.91 E-value=8.6e-25 Score=182.37 Aligned_cols=171 Identities=23% Similarity=0.334 Sum_probs=126.2
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD 84 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~ 84 (225)
+.|+|++++++.|.+.+..+...+..+.. ...+..++||+||||||||++|+++|+.++.+++.+++.++.. .|.|.
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~--~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~-~~~g~ 127 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKG--NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS-KWMGE 127 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCS--SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHS-CC---
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhc--CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhh-hhcch
Confidence 45799999999999988655444433332 1234568999999999999999999999999999999988864 57776
Q ss_pred cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910 85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV 164 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~ 164 (225)
. ...++.+|..+ ....++||||||+|.+.+.+... ......++++.|+..|++... +... +
T Consensus 128 ~-~~~~~~~f~~a----~~~~~~vl~iDEid~l~~~r~~~--~~~~~~~~~~~ll~~l~~~~~----------~~~~--v 188 (355)
T 2qp9_X 128 S-EKLVKQLFAMA----RENKPSIIFIDQVDALTGTRGEG--ESEASRRIKTELLVQMNGVGN----------DSQG--V 188 (355)
T ss_dssp C-HHHHHHHHHHH----HHTSSEEEEEECGGGGTC--------CTHHHHHHHHHHHHHHHCC-------------CC--E
T ss_pred H-HHHHHHHHHHH----HHcCCeEEEEechHhhcccCCCC--cchHHHHHHHHHHHHhhcccc----------cCCC--e
Confidence 5 55666777654 44578999999999999775432 223345678889999986431 1122 8
Q ss_pred eEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 165 FNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 165 ~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
++|++||. ++.++++++|||+..+.++.|+.+.
T Consensus 189 ~vI~atn~-------~~~ld~al~rRf~~~i~i~~P~~~~ 221 (355)
T 2qp9_X 189 LVLGATNI-------PWQLDSAIRRRFERRIYIPLPDLAA 221 (355)
T ss_dssp EEEEEESC-------GGGSCHHHHHTCCEEEECCCCCHHH
T ss_pred EEEeecCC-------cccCCHHHHcccCEEEEeCCcCHHH
Confidence 99999999 6689999999999999999998765
No 15
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.90 E-value=2.2e-25 Score=182.04 Aligned_cols=173 Identities=21% Similarity=0.330 Sum_probs=130.2
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD 84 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~ 84 (225)
+.|+|++++++.|.+.+..+..++..+...++ .+..++||+||||||||++|+++|+.++.+++.+++.++.. .|.|.
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~-~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~-~~~g~ 92 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGM-TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT-MWFGE 92 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC-CCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHH-HHHTT
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCC-CCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHh-hhcCc
Confidence 35899999999999988665544443333333 23458999999999999999999999999999999988754 46666
Q ss_pred cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccC-CCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCc
Q psy5910 85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQ 163 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~ 163 (225)
. ...+..+|..+ ....++++||||+|.+...++... .......++++.|+..|++... ..+
T Consensus 93 ~-~~~~~~~f~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~-----------~~~-- 154 (301)
T 3cf0_A 93 S-EANVREIFDKA----RQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST-----------KKN-- 154 (301)
T ss_dssp C-TTHHHHHHHHH----HHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT-----------TSS--
T ss_pred h-HHHHHHHHHHH----HhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC-----------CCC--
Confidence 5 34456666654 345789999999999987764322 1122334578899999986421 123
Q ss_pred eeEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910 164 VFNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN 204 (225)
Q Consensus 164 ~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~ 204 (225)
+++|+|||. ++.+|++++| ||+..+.++.|+.+.
T Consensus 155 v~vi~atn~-------~~~ld~al~r~gRf~~~i~i~~p~~~~ 190 (301)
T 3cf0_A 155 VFIIGATNR-------PDIIDPAILRPGRLDQLIYIPLPDEKS 190 (301)
T ss_dssp EEEEEEESC-------GGGSCGGGGSTTSSCEEEECCCCCHHH
T ss_pred EEEEEecCC-------ccccChHHhcCCccceEEecCCcCHHH
Confidence 899999999 6689999999 999999999998865
No 16
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.90 E-value=3.1e-24 Score=174.61 Aligned_cols=148 Identities=16% Similarity=0.186 Sum_probs=94.9
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcc
Q psy5910 40 KSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISK 119 (225)
Q Consensus 40 ~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~ 119 (225)
+.++||+||||||||++|+++|+.++.+++.++++.+.+ .|.|.. ...+...|..+....+...++||||||+|++.+
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~-~~~g~~-~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~ 113 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELES-GNAGEP-AKLIRQRYREAAEIIRKGNMCCLFINDLDAGAG 113 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHC-C---HH-HHHHHHHHHHHHHHHTTSSCCCEEEECCC----
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhh-ccCchh-HHHHHHHHHHHHHHHhcCCCeEEEEechhhhcC
Confidence 458999999999999999999999999999999988865 577765 555666776653333456899999999999998
Q ss_pred cccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHh--hccccccc
Q psy5910 120 KTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIIN--RINQETNF 197 (225)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~ 197 (225)
.++...........+++.|+++||+................+ +++|+|||. ++.+|++++| ||+..+.+
T Consensus 114 ~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~--v~vI~ttN~-------~~~ld~al~R~~R~d~~i~~ 184 (293)
T 3t15_A 114 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENAR--VPIIVTGND-------FSTLYAPLIRDGRMEKFYWA 184 (293)
T ss_dssp ----------CHHHHHHHHHHHHHCCC-----------CCCC--CCEEEECSS-------CCC--CHHHHHHHEEEEEEC
T ss_pred CCCCCccccchHHHHHHHHHHHhccccccccccccccccCCC--cEEEEecCC-------cccCCHHHhCCCCCceeEeC
Confidence 654333333455678899999999643221111111112223 889999998 7789999998 89888865
Q ss_pred c
Q psy5910 198 L 198 (225)
Q Consensus 198 ~ 198 (225)
|
T Consensus 185 P 185 (293)
T 3t15_A 185 P 185 (293)
T ss_dssp C
T ss_pred c
Confidence 4
No 17
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.89 E-value=4.2e-24 Score=183.09 Aligned_cols=171 Identities=20% Similarity=0.335 Sum_probs=122.5
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh-CCCeEEeccCcccccCccC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII-NVPIIVVDATSFTEAGYVG 83 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~-~~~~~~~~~~~~~~~~~~g 83 (225)
+.|+|++++++.|.+.+..+...+..... ...+.+++||+||||||||++|+++|+.+ +.+++.+++.++.. .|.|
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~--~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~-~~~g 210 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTG--KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS-KWLG 210 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSG--GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhc--cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHh-hhcc
Confidence 45799999999999887554443332221 12345799999999999999999999999 88999999988864 5666
Q ss_pred CcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCc
Q psy5910 84 DDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQ 163 (225)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~ 163 (225)
.. ...++.+|..+ ....++||||||+|.+.+.+... ......++++.|+..|++... +..+
T Consensus 211 ~~-~~~~~~~f~~a----~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~lL~~l~~~~~----------~~~~-- 271 (444)
T 2zan_A 211 ES-EKLVKNLFQLA----RENKPSIIFIDEIDSLCGSRSEN--ESEAARRIKTEFLVQMQGVGV----------DNDG-- 271 (444)
T ss_dssp -C-CCTHHHHHHHH----HHSCSEEEEESCTTTTCCCSSCC--CCGGGHHHHHHHHTTTTCSSC----------CCSS--
T ss_pred hH-HHHHHHHHHHH----HHcCCeEEEEechHhhccCCCCc--cccHHHHHHHHHHHHHhCccc----------CCCC--
Confidence 54 33455666554 44578999999999998775432 223345688889888886431 1122
Q ss_pred eeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 164 VFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 164 ~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
+++|+|||. ++.++++++|||+..+.++.|+.+.
T Consensus 272 v~vI~atn~-------~~~ld~al~rRf~~~i~i~~P~~~~ 305 (444)
T 2zan_A 272 ILVLGATNI-------PWVLDSAIRRRFEKRIYIPLPEAHA 305 (444)
T ss_dssp CEEEEEESC-------GGGSCHHHHTTCCEEEECCCCCHHH
T ss_pred EEEEecCCC-------ccccCHHHHhhcceEEEeCCcCHHH
Confidence 899999999 6689999999999999999998765
No 18
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.89 E-value=5.1e-24 Score=182.89 Aligned_cols=172 Identities=22% Similarity=0.325 Sum_probs=128.5
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD 84 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~ 84 (225)
+.|+|++++++.+.+.+.. +..+..+...+...+ .++||+||||||||++|+++++.++.+++.+++.++.. .|.|.
T Consensus 16 ~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p-~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~-~~~g~ 92 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMP-KGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVE-LFVGV 92 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCC-SEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTT-CCTTH
T ss_pred HHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCC-CeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHH-HHhcc
Confidence 4589999999999887643 444444555555544 47999999999999999999999999999999988875 46665
Q ss_pred cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccC-CCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCc
Q psy5910 85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQ 163 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~ 163 (225)
. ...++.+|..+ ....|+||||||+|.+..+++... +.+.....+++.|+..|++... ...
T Consensus 93 ~-~~~~r~lf~~A----~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~-----------~~~-- 154 (476)
T 2ce7_A 93 G-AARVRDLFAQA----KAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS-----------KEG-- 154 (476)
T ss_dssp H-HHHHHHHHHHH----HHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCG-----------GGT--
T ss_pred c-HHHHHHHHHHH----HhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCC-----------CCC--
Confidence 4 44566676665 445789999999999998765322 3344445678899999986421 112
Q ss_pred eeEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910 164 VFNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN 204 (225)
Q Consensus 164 ~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~ 204 (225)
+++|++||. ++.+|++++| ||++.+.++.|+.+.
T Consensus 155 viVIaaTn~-------~~~Ld~allR~gRFd~~i~i~~Pd~~~ 190 (476)
T 2ce7_A 155 IIVMAATNR-------PDILDPALLRPGRFDKKIVVDPPDMLG 190 (476)
T ss_dssp EEEEEEESC-------GGGSCGGGGSTTSSCEEEECCCCCHHH
T ss_pred EEEEEecCC-------hhhhchhhcccCcceeEeecCCCCHHH
Confidence 899999999 6689999998 999999999998754
No 19
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.89 E-value=5.9e-24 Score=171.28 Aligned_cols=171 Identities=21% Similarity=0.355 Sum_probs=130.5
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD 84 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~ 84 (225)
+.|+|++++++.|.+.+..++.+...+.+.++..+. +++|+||||||||++++++|..++.+++.+++.++.. .|.|.
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~-GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~-~~~~~ 87 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPA-GVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN-MYVGE 87 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCS-EEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS-STTHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCC-eEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh-hhhhH
Confidence 457999999999999888888888888888887766 5999999999999999999999999999999988754 35554
Q ss_pred cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910 85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV 164 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~ 164 (225)
. ...+..+|+.+ ....++++|+||++.+...+.... .....++.+.++..|++.... .. +
T Consensus 88 ~-~~~i~~vf~~a----~~~~p~i~~~Deid~~~~~r~~~~--~~~~~~~~~~~l~~Lsgg~~~-----------~~--~ 147 (274)
T 2x8a_A 88 S-ERAVRQVFQRA----KNSAPCVIFFDEVDALCPRRSDRE--TGASVRVVNQLLTEMDGLEAR-----------QQ--V 147 (274)
T ss_dssp H-HHHHHHHHHHH----HHTCSEEEEEETCTTTCC-----------CTTHHHHHHHHHHTCCST-----------TC--E
T ss_pred H-HHHHHHHHHHH----HhcCCCeEeeehhhhhhcccCCCc--chHHHHHHHHHHHhhhccccc-----------CC--E
Confidence 3 45566677654 345789999999999876543211 111234678888888875311 12 7
Q ss_pred eEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910 165 FNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN 204 (225)
Q Consensus 165 ~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~ 204 (225)
++++++|. ++.+|++++| ||++.|.++.|+.+.
T Consensus 148 i~ia~tn~-------p~~LD~al~r~gRfd~~i~~~~P~~~~ 182 (274)
T 2x8a_A 148 FIMAATNR-------PDIIDPAILRPGRLDKTLFVGLPPPAD 182 (274)
T ss_dssp EEEEEESC-------GGGSCHHHHSTTSSCEEEECCSCCHHH
T ss_pred EEEeecCC-------hhhCCHhhcCcccCCeEEEeCCcCHHH
Confidence 88899999 7789999999 999999999999866
No 20
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.88 E-value=2.8e-23 Score=175.26 Aligned_cols=172 Identities=23% Similarity=0.317 Sum_probs=120.8
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD 84 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~ 84 (225)
+.|+|++.+++.|.+.+.....+....... ..+..++||+||||||||++|+++|+.++.+++.+++..+.. .|.|.
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~-~~~g~ 191 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGL--RAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTS-KYVGE 191 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGG--GCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC--------
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhccc--CCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhc-cccch
Confidence 357999999999998875544433222222 234579999999999999999999999999999999998875 57776
Q ss_pred cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910 85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV 164 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~ 164 (225)
. ...+..+|..+ ....++||||||+|.+...+... ......++++.|+..|++.... ...+ +
T Consensus 192 ~-~~~~~~~~~~a----~~~~~~il~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~l~~~~~~---------~~~~--v 253 (389)
T 3vfd_A 192 G-EKLVRALFAVA----RELQPSIIFIDQVDSLLCERREG--EHDASRRLKTEFLIEFDGVQSA---------GDDR--V 253 (389)
T ss_dssp C-HHHHHHHHHHH----HHSSSEEEEEETGGGGC----------CTHHHHHHHHHHHHHHHC--------------C--E
T ss_pred H-HHHHHHHHHHH----HhcCCeEEEEECchhhcccCCCc--cchHHHHHHHHHHHHhhccccc---------CCCC--E
Confidence 5 45566666654 44577999999999997765332 2334566888999999864321 1123 8
Q ss_pred eEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 165 FNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 165 ~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
++|+|||. ++.++++++|||+..+.++.|+.+.
T Consensus 254 ~vI~atn~-------~~~l~~~l~~R~~~~i~i~~p~~~~ 286 (389)
T 3vfd_A 254 LVMGATNR-------PQELDEAVLRRFIKRVYVSLPNEET 286 (389)
T ss_dssp EEEEEESC-------GGGCCHHHHTTCCEEEECCCCCHHH
T ss_pred EEEEecCC-------chhcCHHHHcCcceEEEcCCcCHHH
Confidence 99999998 6689999999999888888888766
No 21
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.88 E-value=2.7e-23 Score=173.46 Aligned_cols=172 Identities=22% Similarity=0.310 Sum_probs=124.8
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD 84 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~ 84 (225)
+.|+|++.+++.|.+.+..+......... ...+..++||+||||||||++|+++|+.++.+++.+++..+.. .|.|.
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~--~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~-~~~g~ 160 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTG--LRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWVGE 160 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCG--GGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCC-SSTTH
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhh--ccCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhc-cccch
Confidence 45799999999999988654333222221 1234568999999999999999999999999999999988865 46665
Q ss_pred cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910 85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV 164 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~ 164 (225)
. ...++.++..+ ....++||||||+|.+...+... ......++++.|+..|++.... +..+ +
T Consensus 161 ~-~~~~~~~~~~a----~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~lL~~l~~~~~~---------~~~~--v 222 (357)
T 3d8b_A 161 G-EKMVRALFAVA----RCQQPAVIFIDEIDSLLSQRGDG--EHESSRRIKTEFLVQLDGATTS---------SEDR--I 222 (357)
T ss_dssp H-HHHHHHHHHHH----HHTCSEEEEEETHHHHTBC--------CHHHHHHHHHHHHHHC-------------CCCC--E
T ss_pred H-HHHHHHHHHHH----HhcCCeEEEEeCchhhhccCCCC--cchHHHHHHHHHHHHHhccccc---------CCCC--E
Confidence 4 45556666554 44578999999999998765332 2334456788899999864311 1223 8
Q ss_pred eEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 165 FNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 165 ~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
++|++||. ++.++++++|||+..+.++.|+.+.
T Consensus 223 ~vI~atn~-------~~~l~~~l~~Rf~~~i~i~~p~~~~ 255 (357)
T 3d8b_A 223 LVVGATNR-------PQEIDEAARRRLVKRLYIPLPEASA 255 (357)
T ss_dssp EEEEEESC-------GGGBCHHHHTTCCEEEECCCCCHHH
T ss_pred EEEEecCC-------hhhCCHHHHhhCceEEEeCCcCHHH
Confidence 89999998 6689999999999888888888765
No 22
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.88 E-value=6.1e-23 Score=166.98 Aligned_cols=173 Identities=22% Similarity=0.333 Sum_probs=125.4
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD 84 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~ 84 (225)
+.|+|++++++.|.+.+.....++..... ...+..++||+||||||||++|+++++.++.+++.+++..+.. .|.|.
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~--~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~-~~~~~ 97 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTG--LRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTS-KYVGD 97 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCG--GGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSS-SSCSC
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhc--CCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhh-cccch
Confidence 45799999999999887554433222221 2234568999999999999999999999999999999988764 46665
Q ss_pred cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910 85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV 164 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~ 164 (225)
. ....+.++..+ ....+++|||||+|.+...++... .....++++.|+..+++..... .... +
T Consensus 98 ~-~~~~~~~~~~~----~~~~~~vl~iDEid~l~~~~~~~~--~~~~~~~~~~ll~~l~~~~~~~--------~~~~--v 160 (297)
T 3b9p_A 98 G-EKLVRALFAVA----RHMQPSIIFIDEVDSLLSERSSSE--HEASRRLKTEFLVEFDGLPGNP--------DGDR--I 160 (297)
T ss_dssp H-HHHHHHHHHHH----HHTCSEEEEEETGGGTSBCC-------CCSHHHHHHHHHHHHHCC--------------C--E
T ss_pred H-HHHHHHHHHHH----HHcCCcEEEeccHHHhccccccCc--chHHHHHHHHHHHHHhcccccC--------CCCc--E
Confidence 4 55556666554 445789999999999987764322 2233557888999998643210 0122 8
Q ss_pred eEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 165 FNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 165 ~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
++|++||. ++.+++++++||+..+.++.|+.+.
T Consensus 161 ~vi~~tn~-------~~~l~~~l~~R~~~~i~~~~p~~~~ 193 (297)
T 3b9p_A 161 VVLAATNR-------PQELDEAALRRFTKRVYVSLPDEQT 193 (297)
T ss_dssp EEEEEESC-------GGGBCHHHHHHCCEEEECCCCCHHH
T ss_pred EEEeecCC-------hhhCCHHHHhhCCeEEEeCCcCHHH
Confidence 88899988 6689999999999889999888765
No 23
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.88 E-value=2.4e-23 Score=168.38 Aligned_cols=174 Identities=25% Similarity=0.322 Sum_probs=124.2
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD 84 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~ 84 (225)
+.|+|++++++.|.+.+.........+...+.. +..++||+||||||||++|+++++.++.+++.+++..+.. .|.|.
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~-~~~~~ 94 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIE-PPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVK-KFIGE 94 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCC-CCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCC-CSTTH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCC-CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHH-hccch
Confidence 457999999999999886655544443333332 3458999999999999999999999999999999988764 46655
Q ss_pred cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910 85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV 164 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~ 164 (225)
. ...+...+..+ ....++||||||+|.+.+++.... .......+..|..+++..... ....+ +
T Consensus 95 ~-~~~~~~~~~~~----~~~~~~vl~iDEid~l~~~~~~~~--~~~~~~~~~~l~~ll~~~~~~--------~~~~~--~ 157 (285)
T 3h4m_A 95 G-ASLVKDIFKLA----KEKAPSIIFIDEIDAIAAKRTDAL--TGGDREVQRTLMQLLAEMDGF--------DARGD--V 157 (285)
T ss_dssp H-HHHHHHHHHHH----HHTCSEEEEEETTHHHHBCCSSSC--CGGGGHHHHHHHHHHHHHHTT--------CSSSS--E
T ss_pred H-HHHHHHHHHHH----HHcCCeEEEEECHHHhcccCcccc--CCccHHHHHHHHHHHHHhhCC--------CCCCC--E
Confidence 4 44555565554 445778999999999987654322 111223455555555431100 01122 8
Q ss_pred eEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910 165 FNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN 204 (225)
Q Consensus 165 ~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~ 204 (225)
++|+|||. ++.+++++++ ||+..+.++.|+.++
T Consensus 158 ~vI~ttn~-------~~~l~~~l~~~~Rf~~~i~~~~p~~~~ 192 (285)
T 3h4m_A 158 KIIGATNR-------PDILDPAILRPGRFDRIIEVPAPDEKG 192 (285)
T ss_dssp EEEEECSC-------GGGBCHHHHSTTSEEEEEECCCCCHHH
T ss_pred EEEEeCCC-------chhcCHHHcCCCcCCeEEEECCCCHHH
Confidence 89999998 6789999999 999999999988866
No 24
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.88 E-value=5.5e-23 Score=164.04 Aligned_cols=172 Identities=23% Similarity=0.347 Sum_probs=123.3
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD 84 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~ 84 (225)
+.|+|++++++.+.+.+.. ......+...+... +.+++|+||||||||++|+++++.++.+++.+++.++.. .+.|.
T Consensus 12 ~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~-~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~-~~~~~ 88 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKI-PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE-MFVGV 88 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHH-HHCGGGC-----CC-CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTT-SCCCC
T ss_pred HHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCC-CCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHH-Hhhhh
Confidence 4579999999999876533 22223333333333 347999999999999999999999999999999988865 46666
Q ss_pred cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccC-CCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCc
Q psy5910 85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQ 163 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~ 163 (225)
. ...+..+|+.+ ....++++||||+|.+...+.... +......+..+.++..+++.. ....
T Consensus 89 ~-~~~~~~~~~~a----~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----------~~~~-- 150 (257)
T 1lv7_A 89 G-ASRVRDMFEQA----KKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE-----------GNEG-- 150 (257)
T ss_dssp C-HHHHHHHHHHH----HTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC-----------SSSC--
T ss_pred h-HHHHHHHHHHH----HHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc-----------cCCC--
Confidence 5 44566666654 334678999999999988764332 122223356778888887532 1122
Q ss_pred eeEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910 164 VFNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN 204 (225)
Q Consensus 164 ~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~ 204 (225)
+++|++||. ++.++++++| ||++.+.++.|+.++
T Consensus 151 ~~vI~~tn~-------~~~l~~~l~r~~rf~~~i~i~~P~~~~ 186 (257)
T 1lv7_A 151 IIVIAATNR-------PDVLDPALLRPGRFDRQVVVGLPDVRG 186 (257)
T ss_dssp EEEEEEESC-------TTTSCGGGGSTTSSCEEEECCCCCHHH
T ss_pred EEEEEeeCC-------chhCCHHHcCCCcCCeEEEeCCCCHHH
Confidence 889999998 6789999998 999998888888754
No 25
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.87 E-value=1.2e-23 Score=181.71 Aligned_cols=170 Identities=24% Similarity=0.339 Sum_probs=131.8
Q ss_pred eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCc
Q psy5910 6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDD 85 (225)
Q Consensus 6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~ 85 (225)
.|+|++.+++.|.+.+.....+...+...+. .+..++||+||||||||++|+++++.++.+|+.++|..+.. .|.|..
T Consensus 205 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~-~~~g~~ 282 (489)
T 3hu3_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGV-KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS-KLAGES 282 (489)
T ss_dssp GCCSCHHHHHHHHHHTHHHHHCHHHHHHHTC-CCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHT-SCTTHH
T ss_pred HcCCHHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhh-hhcchh
Confidence 5799999999999988665555444443333 23458999999999999999999999999999999988874 566654
Q ss_pred HHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCcee
Q psy5910 86 VESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVF 165 (225)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~ 165 (225)
...+...|..+ ....+++|||||+|.+.+.++... .....++++.|+.+|++... ..+ ++
T Consensus 283 -~~~~~~~f~~A----~~~~p~iLfLDEId~l~~~~~~~~--~~~~~~~~~~LL~~ld~~~~-----------~~~--v~ 342 (489)
T 3hu3_A 283 -ESNLRKAFEEA----EKNAPAIIFIDELDAIAPKREKTH--GEVERRIVSQLLTLMDGLKQ-----------RAH--VI 342 (489)
T ss_dssp -HHHHHHHHHHH----HHTCSEEEEEESHHHHCBCTTSCC--CHHHHHHHHHHHHHHHHSCT-----------TSC--EE
T ss_pred -HHHHHHHHHHH----HhcCCcEEEecchhhhcccccccc--chHHHHHHHHHHHHhhcccc-----------CCc--eE
Confidence 45566677665 445688999999999998764321 22345689999999996421 122 89
Q ss_pred EEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910 166 NIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN 204 (225)
Q Consensus 166 ~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~ 204 (225)
+|+|||. ++.+++++++ ||+..+.++.|+.++
T Consensus 343 vIaaTn~-------~~~Ld~al~r~gRf~~~i~i~~P~~~e 376 (489)
T 3hu3_A 343 VMAATNR-------PNSIDPALRRFGRFDREVDIGIPDATG 376 (489)
T ss_dssp EEEEESC-------GGGBCGGGGSTTSSCEEEECCCCCHHH
T ss_pred EEEecCC-------ccccCHHHhCCCcCceEEEeCCCCHHH
Confidence 9999999 6679999999 899999999998866
No 26
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.87 E-value=2.7e-23 Score=169.58 Aligned_cols=193 Identities=36% Similarity=0.574 Sum_probs=130.2
Q ss_pred CcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCcc
Q psy5910 3 LDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYV 82 (225)
Q Consensus 3 l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~ 82 (225)
|++.|+|++++++.+..++...+.+..............++||+||||||||++|+++++.++.+++.+++..+...+|.
T Consensus 13 l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~ 92 (310)
T 1ofh_A 13 LDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYV 92 (310)
T ss_dssp HHTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSG
T ss_pred HhhhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCcc
Confidence 56789999999999988774432211111111111234689999999999999999999999999999999988766788
Q ss_pred CCcHHHHHHHHHHhcchhhhhh-CCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCC
Q psy5910 83 GDDVESIIQKLLHECDYDVELA-EQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQN 161 (225)
Q Consensus 83 g~~~~~~~~~~~~~~~~~~~~~-~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~ 161 (225)
|.+....+..++....+.+... .++|+||||+|++.+..... +.+...+.+++.|+++|++....... + ..+..+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~-~~~~~~~~~~~~Ll~~le~~~~~~~~--~-~~~~~~ 168 (310)
T 1ofh_A 93 GKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYS-GADVSREGVQRDLLPLVEGSTVSTKH--G-MVKTDH 168 (310)
T ss_dssp GGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCC-SSHHHHHHHHHHHHHHHHCCEEEETT--E-EEECTT
T ss_pred CccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCcccccc-ccchhHHHHHHHHHHHhcCCeEeccc--c-cccCCc
Confidence 8765666677766554333333 57899999999998775321 22233344689999999964321110 0 011112
Q ss_pred CceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 162 PQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 162 ~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
+++|+++|. .+.++..+++++++||+..+.|+.|+.+.
T Consensus 169 --~~~i~~~~~---~~~~~~~l~~~l~~R~~~~i~~~~~~~~~ 206 (310)
T 1ofh_A 169 --ILFIASGAF---QVARPSDLIPELQGRLPIRVELTALSAAD 206 (310)
T ss_dssp --CEEEEEECC---SSSCGGGSCHHHHHTCCEEEECCCCCHHH
T ss_pred --EEEEEcCCc---ccCCcccCCHHHHhhCCceEEcCCcCHHH
Confidence 555555332 01235689999999999879999998765
No 27
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.87 E-value=8.4e-23 Score=163.03 Aligned_cols=172 Identities=25% Similarity=0.363 Sum_probs=111.3
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD 84 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~ 84 (225)
+.|+|++++++.+.+.+.. ......+...+.. .++++||+||||||||++|+++++.++.+++.+++..+.. .|.|.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~-~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~-~~~~~ 82 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDY-LKSPERFLQLGAK-VPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVE-VIGGL 82 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHH-HHCCC------CC-CCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSS-SSTTH
T ss_pred HHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCC-CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHh-hccCh
Confidence 4579999999999876533 3333333333332 3458999999999999999999999999999999988764 35544
Q ss_pred cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCC--CCCChHHHHHHHHHHHhcCCcCccccccccCCCCCC
Q psy5910 85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSG--KDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNP 162 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~--~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~ 162 (225)
. ...+..++..+ ....++||||||+|.+...+..... ...........|+..+++.. ....
T Consensus 83 ~-~~~~~~~~~~a----~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~-----------~~~~- 145 (262)
T 2qz4_A 83 G-AARVRSLFKEA----RARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMG-----------TTDH- 145 (262)
T ss_dssp H-HHHHHHHHHHH----HHTCSEEEEEECC-------------------CHHHHHHHHHHHTCC-----------TTCC-
T ss_pred h-HHHHHHHHHHH----HhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcC-----------CCCC-
Confidence 3 44556666554 3346899999999999876532210 11122234556666666432 1122
Q ss_pred ceeEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910 163 QVFNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN 204 (225)
Q Consensus 163 ~~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~ 204 (225)
+++|+|+|. ++.+|++++| ||+..+.++.|+.++
T Consensus 146 -~~vi~~tn~-------~~~ld~~l~~~~R~~~~i~i~~p~~~~ 181 (262)
T 2qz4_A 146 -VIVLASTNR-------ADILDGALMRPGRLDRHVFIDLPTLQE 181 (262)
T ss_dssp -EEEEEEESC-------GGGGGSGGGSTTSCCEEEECCSCCHHH
T ss_pred -EEEEecCCC-------hhhcCHHHhcCCcCCeEEEeCCcCHHH
Confidence 889999998 6689999999 999998888888765
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.87 E-value=6.7e-24 Score=193.31 Aligned_cols=173 Identities=22% Similarity=0.342 Sum_probs=132.3
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD 84 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~ 84 (225)
+.++|++++++.|.+.+.+...+.......++ .+..++||+||||||||++|+++|+.++.+++.+++..+.. .|.|.
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~-~~~g~ 554 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGM-TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT-MWFGE 554 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCC-CCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTT-CCTTT
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCC-CCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhh-hhcCc
Confidence 45789999999999988766655544444444 23458999999999999999999999999999999998875 58887
Q ss_pred cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCC-CCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCc
Q psy5910 85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSG-KDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQ 163 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~-~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~ 163 (225)
. ...+..+|+.+ ....++|+||||+|++...+....+ ......++++.|+..|++... ..+
T Consensus 555 ~-~~~i~~~f~~a----~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~-----------~~~-- 616 (806)
T 1ypw_A 555 S-EANVREIFDKA----RQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST-----------KKN-- 616 (806)
T ss_dssp S-SHHHHHHHHHH----HHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC-----------------C--
T ss_pred c-HHHHHHHHHHH----HhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccc-----------cCC--
Confidence 6 45667777765 4557899999999999887643211 112345677888888886421 223
Q ss_pred eeEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910 164 VFNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN 204 (225)
Q Consensus 164 ~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~ 204 (225)
+++|+|||. ++.+|++++| ||+..|.|+.|+.+.
T Consensus 617 v~vI~tTN~-------~~~ld~allrpgRf~~~i~~~~p~~~~ 652 (806)
T 1ypw_A 617 VFIIGATNR-------PDIIDPAILRPGRLDQLIYIPLPDEKS 652 (806)
T ss_dssp CBCCCCCBS-------CGGGSCTTSSGGGTTSCCCCCCCCCSH
T ss_pred eEEEEecCC-------cccCCHHHhCccccCceeecCCCCHHH
Confidence 899999999 6789999999 999999999999877
No 29
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.85 E-value=5.1e-22 Score=171.36 Aligned_cols=172 Identities=23% Similarity=0.353 Sum_probs=127.1
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD 84 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~ 84 (225)
+.|+|++++++.+.+.+. .+.....+.+.++..+. +++|+||||||||+||++|+..++.+++.+++.++.+ .|.|.
T Consensus 31 ~dv~G~~~~k~~l~~lv~-~l~~~~~~~~lg~~ip~-GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~-~~~g~ 107 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPK-GVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE-MFVGV 107 (499)
T ss_dssp TSSCSCHHHHHHHHHHHH-HHHCGGGTTTTSCCCCS-EEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTS-SCTTH
T ss_pred HHcCCcHHHHHHHHHHHH-HhhchhhhhhccCCCCc-eEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHH-hhhhh
Confidence 457999999999988653 34445556666766655 6999999999999999999999999999999988864 45554
Q ss_pred cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccC-CCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCc
Q psy5910 85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQ 163 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~ 163 (225)
. ...+..+|+.+ ....++++||||+|.+...+.... +.........+.|+..|++... ...
T Consensus 108 ~-~~~v~~lfq~a----~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~-----------~~~-- 169 (499)
T 2dhr_A 108 G-AARVRDLFETA----KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK-----------DTA-- 169 (499)
T ss_dssp H-HHHHHHHTTTS----SSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS-----------SCC--
T ss_pred H-HHHHHHHHHHH----HhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc-----------Ccc--
Confidence 3 34456666654 234679999999999987654321 1122233456777777775431 112
Q ss_pred eeEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910 164 VFNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN 204 (225)
Q Consensus 164 ~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~ 204 (225)
+++++++|. ++.+|++++| ||++.+.++.|+.+.
T Consensus 170 viviAatn~-------p~~LD~aLlr~gRfdr~i~i~~Pd~~~ 205 (499)
T 2dhr_A 170 IVVMAATNR-------PDILDPALLRPGRFDRQIAIDAPDVKG 205 (499)
T ss_dssp CEEEECCSC-------GGGSCTTTSSTTSSCCEEECCCCCHHH
T ss_pred EEEEEecCC-------hhhcCcccccccccceEEecCCCCHHH
Confidence 788999998 6679999998 899999999998765
No 30
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.84 E-value=2.2e-23 Score=167.24 Aligned_cols=173 Identities=27% Similarity=0.348 Sum_probs=113.8
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD 84 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~ 84 (225)
+.|+|++.+++.+.+.+.. +.....+...+... ..++||+||||||||++|+++++.++.+++.+++..+.. .|.|.
T Consensus 11 ~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~-~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~-~~~~~ 87 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKI-PKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIE-MFVGL 87 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCC-CSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTT-SCSSS
T ss_pred HHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCC-CceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHH-hhcch
Confidence 4579999999999886642 22222222223322 347999999999999999999999999999999987764 35554
Q ss_pred cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccC--CCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCC
Q psy5910 85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVS--GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNP 162 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~--~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~ 162 (225)
.. ..+..+|..+ ....++||||||+|.+...+.... ..+.....+++.|+..+++... ...
T Consensus 88 ~~-~~~~~~~~~a----~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~------------~~~ 150 (268)
T 2r62_A 88 GA-SRVRDLFETA----KKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGS------------ENA 150 (268)
T ss_dssp CS-SSSSTTHHHH----HHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSC------------SCS
T ss_pred HH-HHHHHHHHHH----HhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCccc------------CCC
Confidence 31 1122333332 234679999999999987653211 1111112245566666664321 112
Q ss_pred ceeEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910 163 QVFNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN 204 (225)
Q Consensus 163 ~~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~ 204 (225)
++++|+|||. ++.++++++| ||+..+.++.|+.++
T Consensus 151 ~v~vi~ttn~-------~~~ld~~l~r~~Rf~~~i~i~~p~~~~ 187 (268)
T 2r62_A 151 PVIVLAATNR-------PEILDPALMRPGRFDRQVLVDKPDFNG 187 (268)
T ss_dssp CCEEEECBSC-------CTTSCGGGGSSSSSCCCCBCCCCCTTT
T ss_pred CEEEEEecCC-------chhcCHhHcCCCCCCeEEEecCcCHHH
Confidence 2889999998 6678999999 999889999998876
No 31
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.81 E-value=2.4e-20 Score=152.28 Aligned_cols=172 Identities=17% Similarity=0.220 Sum_probs=116.0
Q ss_pred CcceeechhhHHhhheeeeEeccc-ceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh-------CCCeEEeccC
Q psy5910 3 LDRHIIGQHETKKIVSVGVYNHYK-RLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII-------NVPIIVVDAT 74 (225)
Q Consensus 3 l~~~i~G~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~-------~~~~~~~~~~ 74 (225)
|++.|+|++++++.+.+.+..... ......+.....+..++||+||||||||++|+++++.+ ..+++.+++.
T Consensus 29 l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 108 (309)
T 3syl_A 29 LDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD 108 (309)
T ss_dssp HHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG
T ss_pred HHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH
Confidence 455789999999999887643321 00000011112334579999999999999999999988 3489999998
Q ss_pred cccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCcccccc
Q psy5910 75 SFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAE 154 (225)
Q Consensus 75 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~ 154 (225)
.+.. .|.|.. ...+...+.. ..++||||||+|.+...++. ......+++.|++.|+...
T Consensus 109 ~l~~-~~~g~~-~~~~~~~~~~-------~~~~vl~iDEid~l~~~~~~----~~~~~~~~~~Ll~~l~~~~-------- 167 (309)
T 3syl_A 109 DLVG-QYIGHT-APKTKEVLKR-------AMGGVLFIDEAYYLYRPDNE----RDYGQEAIEILLQVMENNR-------- 167 (309)
T ss_dssp GTCC-SSTTCH-HHHHHHHHHH-------HTTSEEEEETGGGSCCCC-------CCTHHHHHHHHHHHHHCT--------
T ss_pred Hhhh-hccccc-HHHHHHHHHh-------cCCCEEEEEChhhhccCCCc----ccccHHHHHHHHHHHhcCC--------
Confidence 8864 566765 3334445443 36789999999999855421 2234568899999998632
Q ss_pred ccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 155 KKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 155 ~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
.+ +++|.++|.... ..+..+++++++||+..+.|+.|+.+.
T Consensus 168 -----~~--~~~i~~~~~~~~--~~~~~~~~~l~~R~~~~i~~~~~~~~~ 208 (309)
T 3syl_A 168 -----DD--LVVILAGYADRM--ENFFQSNPGFRSRIAHHIEFPDYSDEE 208 (309)
T ss_dssp -----TT--CEEEEEECHHHH--HHHHHHSTTHHHHEEEEEEECCCCHHH
T ss_pred -----CC--EEEEEeCChHHH--HHHHhhCHHHHHhCCeEEEcCCcCHHH
Confidence 12 677777765100 001134689999999889999999866
No 32
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.81 E-value=6e-21 Score=167.14 Aligned_cols=186 Identities=19% Similarity=0.218 Sum_probs=112.2
Q ss_pred CcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCccccc---
Q psy5910 3 LDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEA--- 79 (225)
Q Consensus 3 l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~--- 79 (225)
|++.++|++++++.+.+.+.. ...+...+...++|+||||||||++|+++++.++.++..+++..+...
T Consensus 79 l~~di~G~~~vk~~i~~~~~l--------~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~ 150 (543)
T 3m6a_A 79 LDEEHHGLEKVKERILEYLAV--------QKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEI 150 (543)
T ss_dssp HHHHCSSCHHHHHHHHHHHHH--------HHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-------
T ss_pred HHHHhccHHHHHHHHHHHHHH--------HHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhh
Confidence 566789999999888664421 111222345578899999999999999999999999999988765321
Q ss_pred -----CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCcc-cc-
Q psy5910 80 -----GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSIT-SL- 152 (225)
Q Consensus 80 -----~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~-~~- 152 (225)
.|.|.. ...+...+..+ ...++|+||||++++.+.+.. ..++.|++.|+......- ..
T Consensus 151 ~g~~~~~ig~~-~~~~~~~~~~a-----~~~~~vl~lDEid~l~~~~~~---------~~~~~LL~~ld~~~~~~~~~~~ 215 (543)
T 3m6a_A 151 RGHRRTYVGAM-PGRIIQGMKKA-----GKLNPVFLLDEIDKMSSDFRG---------DPSSAMLEVLDPEQNSSFSDHY 215 (543)
T ss_dssp --------------CHHHHHHTT-----CSSSEEEEEEESSSCC------------------CCGGGTCTTTTTBCCCSS
T ss_pred hhHHHHHhccC-chHHHHHHHHh-----hccCCEEEEhhhhhhhhhhcc---------CHHHHHHHHHhhhhcceeeccc
Confidence 233332 11222233332 224569999999999876422 156889999985432211 11
Q ss_pred ccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc--chhcccCChhHHHHccC
Q psy5910 153 AEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN--YNLICETNTEDLINFGI 221 (225)
Q Consensus 153 ~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~--~~l~~~~~~~~l~~~~~ 221 (225)
.....+..+ +++|+|+|. ...+++++++||+ .|.|+.|+.++ +.+..++.+..+.+.++
T Consensus 216 ~~~~~~~~~--v~iI~ttN~-------~~~l~~aL~~R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~ 276 (543)
T 3m6a_A 216 IEETFDLSK--VLFIATANN-------LATIPGPLRDRME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGL 276 (543)
T ss_dssp SCCCCBCSS--CEEEEECSS-------TTTSCHHHHHHEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTC
T ss_pred CCeeecccc--eEEEeccCc-------cccCCHHHHhhcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 111111223 788888888 6689999999995 58888888765 55555554544444443
No 33
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.81 E-value=6e-21 Score=151.93 Aligned_cols=172 Identities=23% Similarity=0.353 Sum_probs=119.2
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD 84 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~ 84 (225)
+.++|+++++..+...+. .+.....+.+.++..+. +++|+||||||||++++++++.++.+++.+++.++.. .+.+.
T Consensus 16 ~~i~g~~~~~~~l~~l~~-~~~~~~~~~~~~~~~~~-g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~-~~~~~ 92 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPK-GVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE-MFVGV 92 (254)
T ss_dssp GGCCSCHHHHHHHHHHHH-HHHCHHHHHHTTCCCCS-EEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH-SCTTH
T ss_pred HHhCCcHHHHHHHHHHHH-HHHCHHHHHHcCCCCCC-eEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHH-HHhhH
Confidence 357999999988877543 34444455666666555 5999999999999999999999999999998877643 23333
Q ss_pred cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccC-CCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCc
Q psy5910 85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQ 163 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~ 163 (225)
. ...+..+|+.+ ....++++++||+|.+...+.... .......+..+.++..|++.... ..
T Consensus 93 ~-~~~i~~~~~~~----~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~-----------~~-- 154 (254)
T 1ixz_A 93 G-AARVRDLFETA----KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD-----------TA-- 154 (254)
T ss_dssp H-HHHHHHHHHHH----TTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTT-----------CC--
T ss_pred H-HHHHHHHHHHH----HhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCC-----------CC--
Confidence 2 34455566553 224578999999999986653211 11122234567777777754211 11
Q ss_pred eeEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910 164 VFNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN 204 (225)
Q Consensus 164 ~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~ 204 (225)
+++++++|. ++.+|++++| ||+..+.++.|+.++
T Consensus 155 ~i~~a~t~~-------p~~ld~~l~r~~rf~~~i~i~~p~~~~ 190 (254)
T 1ixz_A 155 IVVMAATNR-------PDILDPALLRPGRFDRQIAIDAPDVKG 190 (254)
T ss_dssp EEEEEEESC-------GGGSCGGGGSTTSSCEEEECCSCCHHH
T ss_pred EEEEEccCC-------chhCCHHHcCCCcCCeEEeeCCcCHHH
Confidence 788888888 6789999998 899999999998765
No 34
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.80 E-value=3.1e-21 Score=165.91 Aligned_cols=168 Identities=13% Similarity=0.165 Sum_probs=110.4
Q ss_pred cceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhC--CCeEEeccCcccccCc
Q psy5910 4 DRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIIN--VPIIVVDATSFTEAGY 81 (225)
Q Consensus 4 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~--~~~~~~~~~~~~~~~~ 81 (225)
.+.++||+++++.+...+.....+. .+++++||+||||||||++|+++|+.++ .+++.++++.+.. .|
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~---------~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~-~~ 105 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKK---------MAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS-TE 105 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTC---------CTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC-SS
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCC---------CCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH-Hh
Confidence 3678999999998776553222111 3446899999999999999999999998 8999999998874 57
Q ss_pred cCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCC-----------------hHHHHHHHHHHHhc
Q psy5910 82 VGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVS-----------------GEGVQQSLLKLIEG 144 (225)
Q Consensus 82 ~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~-----------------~~~~~~~Ll~~l~~ 144 (225)
.|.. +. +...|..+.+ .+...++||||||+|++.+.+......... ..++.+.++..|+.
T Consensus 106 ~~~~-~~-~~~~f~~a~~-~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~ 182 (456)
T 2c9o_A 106 IKKT-EV-LMENFRRAIG-LRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQK 182 (456)
T ss_dssp SCHH-HH-HHHHHHHTEE-EEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHH
T ss_pred hhhh-HH-HHHHHHHHHh-hhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhh
Confidence 7764 33 6777776532 234578999999999999887543210000 00122335555542
Q ss_pred CCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHh--hcccc--cccccccc
Q psy5910 145 VNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIIN--RINQE--TNFLEKLN 202 (225)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~--i~~~~~~~ 202 (225)
.... ... .+++++|||. ++.+|+++.| ||++. +.++.|+.
T Consensus 183 ~~~~---------~~~--~v~i~attn~-------~~~ld~a~~r~~rfd~~~~~~v~~p~~ 226 (456)
T 2c9o_A 183 ERVE---------AGD--VIYIEANSGA-------VKRQGRCDTYATEFDLEAEEYVPLPKG 226 (456)
T ss_dssp TTCC---------TTE--EEEEETTTCC-------EEEEEEETTSCCTTSCSSSSEECCCCS
T ss_pred ccCC---------CCC--EEEEEcCCCC-------cccCChhhcCCcccCcceeEecCCCch
Confidence 2111 111 1566688888 5688888876 99994 66677754
No 35
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.80 E-value=1.6e-19 Score=149.34 Aligned_cols=157 Identities=23% Similarity=0.281 Sum_probs=110.5
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD 84 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~ 84 (225)
+.++|++++++.+...+...... ..+..++||+||||||||++|+++++.++.+++.+++..+..
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~---------~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~------ 93 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKR---------NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEK------ 93 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHT---------TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCS------
T ss_pred HHhCChHHHHHHHHHHHHHHHhc---------CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccc------
Confidence 35799999999988877332110 023358999999999999999999999999999999876532
Q ss_pred cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCcccccc---ccCCCCC
Q psy5910 85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAE---KKNPSQN 161 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~---~~~~~~~ 161 (225)
...+...+.. ...+++|||||++.+.+. .++.|+..|+......-...+ .......
T Consensus 94 --~~~~~~~~~~------~~~~~vl~lDEi~~l~~~-------------~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~ 152 (338)
T 3pfi_A 94 --SGDLAAILTN------LSEGDILFIDEIHRLSPA-------------IEEVLYPAMEDYRLDIIIGSGPAAQTIKIDL 152 (338)
T ss_dssp --HHHHHHHHHT------CCTTCEEEEETGGGCCHH-------------HHHHHHHHHHTSCC---------CCCCCCCC
T ss_pred --hhHHHHHHHh------ccCCCEEEEechhhcCHH-------------HHHHHHHHHHhccchhhcccCccccceecCC
Confidence 2223333332 257899999999999866 789999999875432211000 0001111
Q ss_pred CceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 162 PQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 162 ~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
+.+++|++||. ...+++++++||+..+.++.|+.+.
T Consensus 153 ~~~~~i~atn~-------~~~l~~~L~~R~~~~i~l~~~~~~e 188 (338)
T 3pfi_A 153 PKFTLIGATTR-------AGMLSNPLRDRFGMQFRLEFYKDSE 188 (338)
T ss_dssp CCCEEEEEESC-------GGGSCHHHHTTCSEEEECCCCCHHH
T ss_pred CCeEEEEeCCC-------ccccCHHHHhhcCEEeeCCCcCHHH
Confidence 12788888887 5578999999998888888887665
No 36
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.79 E-value=2.3e-20 Score=170.07 Aligned_cols=171 Identities=23% Similarity=0.339 Sum_probs=133.4
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD 84 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~ 84 (225)
+.|+|++++++.|.+.+..++.++..+...++. +..++||+||||||||++|+++++.++.+++.+++.++.. .+.|.
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~-~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~-~~~g~ 281 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVK-PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS-KLAGE 281 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCC-CCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSS-SSTTH
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCC-CCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhh-hhhhh
Confidence 457999999999999997777776666666654 3458999999999999999999999999999999988764 45554
Q ss_pred cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910 85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV 164 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~ 164 (225)
. ...+..+|+.+ ....++++|+||++.+.+.+... ......++++.|+.+|++... ...+
T Consensus 282 ~-~~~l~~vf~~a----~~~~p~il~iDEid~l~~~~~~~--~~~~~~~~~~~Ll~ll~g~~~-------------~~~v 341 (806)
T 1ypw_A 282 S-ESNLRKAFEEA----EKNAPAIIFIDELDAIAPKREKT--HGEVERRIVSQLLTLMDGLKQ-------------RAHV 341 (806)
T ss_dssp H-HHHHHHHHHHH----HHHCSEEEEEESGGGTSCTTSCC--CSHHHHHHHHHHHHHHHSSCT-------------TSCC
T ss_pred H-HHHHHHHHHHH----HhcCCcEEEeccHHHhhhccccc--cchHHHHHHHHHHHHhhhhcc-------------cccE
Confidence 3 55666777665 44578999999999999875432 122345678889999986431 1228
Q ss_pred eEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910 165 FNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN 204 (225)
Q Consensus 165 ~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~ 204 (225)
+++++||. ++.+++++++ ||+..+.++.|+.++
T Consensus 342 ~vI~atn~-------~~~ld~al~r~gRf~~~i~i~~p~~~~ 376 (806)
T 1ypw_A 342 IVMAATNR-------PNSIDPALRRFGRFDREVDIGIPDATG 376 (806)
T ss_dssp EEEEECSC-------TTTSCTTTTSTTSSCEEECCCCCCHHH
T ss_pred EEecccCC-------chhcCHHHhcccccccccccCCCCHHH
Confidence 88999998 6789999998 999989999988876
No 37
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.79 E-value=3.1e-20 Score=168.76 Aligned_cols=173 Identities=22% Similarity=0.256 Sum_probs=117.8
Q ss_pred CcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCccccc---
Q psy5910 3 LDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEA--- 79 (225)
Q Consensus 3 l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~--- 79 (225)
|.+.++||+++++.+..++.....+.... ..+.+++||+||||||||++|+++++.++.+++.++++.+.+.
T Consensus 456 l~~~v~g~~~~~~~l~~~i~~~~~g~~~~-----~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~ 530 (758)
T 1r6b_X 456 LKMLVFGQDKAIEALTEAIKMARAGLGHE-----HKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_dssp HTTTSCSCHHHHHHHHHHHHHHHTTCSCT-----TSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCC
T ss_pred HHhhccCHHHHHHHHHHHHHHHhcccCCC-----CCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhH
Confidence 56778999999999888774332221110 1233479999999999999999999999999999999877431
Q ss_pred --------CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccc
Q psy5910 80 --------GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITS 151 (225)
Q Consensus 80 --------~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~ 151 (225)
+|.|.+....+...+ ....++|+||||++++.+. +++.|+++|+......
T Consensus 531 ~~l~g~~~g~~g~~~~~~l~~~~-------~~~~~~vl~lDEi~~~~~~-------------~~~~Ll~~le~~~~~~-- 588 (758)
T 1r6b_X 531 SRLIGAPPGYVGFDQGGLLTDAV-------IKHPHAVLLLDEIEKAHPD-------------VFNILLQVMDNGTLTD-- 588 (758)
T ss_dssp SSSCCCCSCSHHHHHTTHHHHHH-------HHCSSEEEEEETGGGSCHH-------------HHHHHHHHHHHSEEEE--
T ss_pred hhhcCCCCCCcCccccchHHHHH-------HhCCCcEEEEeCccccCHH-------------HHHHHHHHhcCcEEEc--
Confidence 244432222222222 3346899999999999877 8999999999754332
Q ss_pred cccccCCCCCCceeEEecCccee--ec------cCc----------cccHHHHHHhhcccccccccccccc
Q psy5910 152 LAEKKNPSQNPQVFNIDTTNILF--IA------GGA----------FSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 152 ~~~~~~~~~~~~~~~i~ttn~~~--i~------~~~----------~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
..++..+..+ +++|+|||..- +. +.. ...+++++++||+..+.|++++.+.
T Consensus 589 ~~g~~~~~~~--~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~ 657 (758)
T 1r6b_X 589 NNGRKADFRN--VVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDV 657 (758)
T ss_dssp TTTEEEECTT--EEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHH
T ss_pred CCCCEEecCC--eEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHH
Confidence 2233333344 78888888621 00 000 0146788999998889999988865
No 38
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.78 E-value=5.5e-20 Score=148.31 Aligned_cols=172 Identities=23% Similarity=0.353 Sum_probs=117.2
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD 84 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~ 84 (225)
+.|+|++++++.+...+. .+.....+.+.++..+. +++|+||||||||+++++++..++.+++.+++.++.. .+.+.
T Consensus 40 ~~i~g~~~~~~~l~~l~~-~~~~~~~l~~~~~~~~~-gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~-~~~~~ 116 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPK-GVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE-MFVGV 116 (278)
T ss_dssp GGSSSCHHHHHHHHHHHH-HHHCHHHHHHTTCCCCC-EEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH-STTTH
T ss_pred HHhCChHHHHHHHHHHHH-HHHCHHHHHHcCCCCCC-eEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHH-HHhhH
Confidence 457999999988877543 34444455566666555 5999999999999999999999999999998877643 23333
Q ss_pred cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccC-CCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCc
Q psy5910 85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQ 163 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~ 163 (225)
. ...+..+|+.+ ....++++++||++.+...+.... ..........+.++..|++... ...
T Consensus 117 ~-~~~i~~~~~~~----~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~-----------~~~-- 178 (278)
T 1iy2_A 117 G-AARVRDLFETA----KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK-----------DTA-- 178 (278)
T ss_dssp H-HHHHHHHHHHH----HTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT-----------TCC--
T ss_pred H-HHHHHHHHHHH----HhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC-----------CCC--
Confidence 2 33455566553 224678999999999876543211 0111123344556666664321 111
Q ss_pred eeEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910 164 VFNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN 204 (225)
Q Consensus 164 ~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~ 204 (225)
+++++++|. ++.+|++++| ||+..+.++.|+.++
T Consensus 179 ~i~~a~t~~-------p~~ld~~l~r~~rf~~~i~i~~p~~~~ 214 (278)
T 1iy2_A 179 IVVMAATNR-------PDILDPALLRPGRFDRQIAIDAPDVKG 214 (278)
T ss_dssp EEEEEEESC-------TTSSCHHHHSTTSSCCEEECCCCCHHH
T ss_pred EEEEEecCC-------chhCCHhHcCCCcCCeEEEeCCcCHHH
Confidence 788888888 6789999998 899999999998765
No 39
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.77 E-value=2.9e-19 Score=162.41 Aligned_cols=170 Identities=23% Similarity=0.263 Sum_probs=113.5
Q ss_pred CcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCccccc
Q psy5910 3 LDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEA 79 (225)
Q Consensus 3 l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~ 79 (225)
|.+.|+||+++++.+..++.......... ..+.+++||+||||||||++|+++|+.+ +.+++.++++.+.+.
T Consensus 489 l~~~viGq~~a~~~l~~~i~~~~~~~~~~-----~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~ 563 (758)
T 3pxi_A 489 LHSRVIGQDEAVVAVAKAVRRARAGLKDP-----KRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEK 563 (758)
T ss_dssp HHTTSCSCHHHHHHHHHHHHHHTTTCSCT-----TSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSS
T ss_pred HhCcCcChHHHHHHHHHHHHHHHcccCCC-----CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccc
Confidence 45678999999999988874433221110 1222369999999999999999999998 688999999888652
Q ss_pred CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCC
Q psy5910 80 GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPS 159 (225)
Q Consensus 80 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~ 159 (225)
+... ...+...+ ....++||||||++++.+. +++.|+++|+...... .+++..+.
T Consensus 564 -~~~~--~~~l~~~~-------~~~~~~vl~lDEi~~~~~~-------------~~~~Ll~~le~g~~~~--~~g~~~~~ 618 (758)
T 3pxi_A 564 -HSTS--GGQLTEKV-------RRKPYSVVLLDAIEKAHPD-------------VFNILLQVLEDGRLTD--SKGRTVDF 618 (758)
T ss_dssp -CCCC-----CHHHH-------HHCSSSEEEEECGGGSCHH-------------HHHHHHHHHHHSBCC-------CCBC
T ss_pred -cccc--cchhhHHH-------HhCCCeEEEEeCccccCHH-------------HHHHHHHHhccCeEEc--CCCCEecc
Confidence 3222 11122222 3346789999999999877 8999999999754432 33444444
Q ss_pred CCCceeEEecCcceeeccC-----ccccHHHHHHhhcccccccccccccc
Q psy5910 160 QNPQVFNIDTTNILFIAGG-----AFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 160 ~~~~~~~i~ttn~~~i~~~-----~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
.+ +++|+|||...-... -...+.+.+++||+..+.|++++.+.
T Consensus 619 ~~--~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~ 666 (758)
T 3pxi_A 619 RN--TILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKH 666 (758)
T ss_dssp TT--CEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHH
T ss_pred CC--eEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHH
Confidence 55 788888885210000 01126788999998889999998865
No 40
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.76 E-value=1.8e-19 Score=147.22 Aligned_cols=173 Identities=25% Similarity=0.327 Sum_probs=108.8
Q ss_pred CcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCccccc
Q psy5910 3 LDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEA 79 (225)
Q Consensus 3 l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~ 79 (225)
|.+.++||+.+++.+...+.......... ..+..++||+||||||||++|+++++.+ +.+++.+++..+...
T Consensus 15 l~~~i~G~~~~~~~l~~~i~~~~~~~~~~-----~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~ 89 (311)
T 4fcw_A 15 LHKRVVGQDEAIRAVADAIRRARAGLKDP-----NRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEK 89 (311)
T ss_dssp HHTTCCSCHHHHHHHHHHHHHHHHTCSCT-----TSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCST
T ss_pred HhhhcCCHHHHHHHHHHHHHHHhcCCCCC-----CCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccccccc
Confidence 56778999999999988774332211100 1223478999999999999999999998 556899988766431
Q ss_pred -----------CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcC
Q psy5910 80 -----------GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLS 148 (225)
Q Consensus 80 -----------~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~ 148 (225)
++.|......+...+ ....++++||||++++.+. +++.|+++|+.....
T Consensus 90 ~~~~~l~g~~~~~~~~~~~~~~~~~~-------~~~~~~vl~lDEi~~l~~~-------------~~~~Ll~~le~~~~~ 149 (311)
T 4fcw_A 90 HAVSRLIGAPPGYVGYEEGGQLTEAV-------RRRPYSVILFDAIEKAHPD-------------VFNILLQMLDDGRLT 149 (311)
T ss_dssp THHHHHHCCCTTSTTTTTCCHHHHHH-------HHCSSEEEEEETGGGSCHH-------------HHHHHHHHHHHSEEE
T ss_pred ccHHHhcCCCCccccccccchHHHHH-------HhCCCeEEEEeChhhcCHH-------------HHHHHHHHHhcCEEE
Confidence 111211111122221 2345689999999999876 899999999865432
Q ss_pred ccccccccCCCCCCceeEEecCccee--ecc-----Cc------------cccHHHHHHhhcccccccccccccc
Q psy5910 149 ITSLAEKKNPSQNPQVFNIDTTNILF--IAG-----GA------------FSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~i~ttn~~~--i~~-----~~------------~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
.. .+...+..+ .++|+|||... +.. .. ...+++++++||+..+.|++|+.+.
T Consensus 150 ~~--~~~~~~~~~--~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~ 220 (311)
T 4fcw_A 150 DS--HGRTVDFRN--TVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQ 220 (311)
T ss_dssp CT--TSCEEECTT--EEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHH
T ss_pred cC--CCCEEECCC--cEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHH
Confidence 11 111111122 55666666610 000 00 1246778889998888888888765
No 41
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.75 E-value=4.5e-19 Score=129.50 Aligned_cols=111 Identities=14% Similarity=0.182 Sum_probs=81.3
Q ss_pred eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccCcc
Q psy5910 6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAGYV 82 (225)
Q Consensus 6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~~~ 82 (225)
.++|++.+++.+.+.+... .....+|||+||||||||++|+++++.. +.+++ ++|..+.+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~------------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~--- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL------------SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA--- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH------------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS---
T ss_pred CceeCCHHHHHHHHHHHHH------------hCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc---
Confidence 5789999988888766221 1234589999999999999999999987 67899 999876542
Q ss_pred CCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCC
Q psy5910 83 GDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNP 162 (225)
Q Consensus 83 g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~ 162 (225)
.. ....+ ....++++||||++.+.+. .|..|+.+|+... .+
T Consensus 66 -~~----~~~~~-------~~a~~g~l~ldei~~l~~~-------------~q~~Ll~~l~~~~-------------~~- 106 (145)
T 3n70_A 66 -PQ----LNDFI-------ALAQGGTLVLSHPEHLTRE-------------QQYHLVQLQSQEH-------------RP- 106 (145)
T ss_dssp -SC----HHHHH-------HHHTTSCEEEECGGGSCHH-------------HHHHHHHHHHSSS-------------CS-
T ss_pred -hh----hhcHH-------HHcCCcEEEEcChHHCCHH-------------HHHHHHHHHhhcC-------------CC-
Confidence 11 11222 2346789999999999877 7899999995422 12
Q ss_pred ceeEEecCcc
Q psy5910 163 QVFNIDTTNI 172 (225)
Q Consensus 163 ~~~~i~ttn~ 172 (225)
+.+|++||.
T Consensus 107 -~~~I~~t~~ 115 (145)
T 3n70_A 107 -FRLIGIGDT 115 (145)
T ss_dssp -SCEEEEESS
T ss_pred -EEEEEECCc
Confidence 778888887
No 42
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.73 E-value=5.4e-18 Score=136.14 Aligned_cols=166 Identities=17% Similarity=0.173 Sum_probs=105.3
Q ss_pred CcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCcc
Q psy5910 3 LDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYV 82 (225)
Q Consensus 3 l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~ 82 (225)
+...++|++.+.+.+.............. . ..+..++||+||||||||++|+++++.++.+++.+++.+. +.
T Consensus 31 ~~~~~i~~~~~~~~i~~~~~~l~~~l~~~---~-~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~----~~ 102 (272)
T 1d2n_A 31 IMNGIIKWGDPVTRVLDDGELLVQQTKNS---D-RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDK----MI 102 (272)
T ss_dssp CTTCCCCCSHHHHHHHHHHHHHHHHHHHC---S-SCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGG----CT
T ss_pred HhcCCCCccHHHHHHHHHHHHHHHHHhcc---C-CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHH----hc
Confidence 34567888877766655311111111000 0 1233589999999999999999999999999999987652 44
Q ss_pred CCcHH---HHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCC
Q psy5910 83 GDDVE---SIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPS 159 (225)
Q Consensus 83 g~~~~---~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~ 159 (225)
|.... ..+...+..+ ....+++|||||+|.+...+... ......+++.|...++....
T Consensus 103 g~~~~~~~~~~~~~~~~~----~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~l~~L~~~~~~~~~------------ 163 (272)
T 1d2n_A 103 GFSETAKCQAMKKIFDDA----YKSQLSCVVVDDIERLLDYVPIG---PRFSNLVLQALLVLLKKAPP------------ 163 (272)
T ss_dssp TCCHHHHHHHHHHHHHHH----HTSSEEEEEECCHHHHTTCBTTT---TBCCHHHHHHHHHHTTCCCS------------
T ss_pred CCchHHHHHHHHHHHHHH----HhcCCcEEEEEChhhhhccCCCC---hhHHHHHHHHHHHHhcCccC------------
Confidence 44322 2334444432 23468999999999996543211 11223466666666664210
Q ss_pred CCCceeEEecCcceeeccCccccHHH-HHHhhcccccccccccc
Q psy5910 160 QNPQVFNIDTTNILFIAGGAFSGIEN-FIINRINQETNFLEKLN 202 (225)
Q Consensus 160 ~~~~~~~i~ttn~~~i~~~~~~~l~~-al~~Rf~~~i~~~~~~~ 202 (225)
...++++|+|||. ++.+++ .+++||+..+.+|.+..
T Consensus 164 ~~~~~~ii~ttn~-------~~~l~~~~l~~rf~~~i~~p~l~~ 200 (272)
T 1d2n_A 164 QGRKLLIIGTTSR-------KDVLQEMEMLNAFSTTIHVPNIAT 200 (272)
T ss_dssp TTCEEEEEEEESC-------HHHHHHTTCTTTSSEEEECCCEEE
T ss_pred CCCCEEEEEecCC-------hhhcchhhhhcccceEEcCCCccH
Confidence 1122788999988 556888 67889988888887766
No 43
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.72 E-value=1.8e-19 Score=148.70 Aligned_cols=160 Identities=19% Similarity=0.253 Sum_probs=103.5
Q ss_pred CcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcc-cccCc
Q psy5910 3 LDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSF-TEAGY 81 (225)
Q Consensus 3 l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~-~~~~~ 81 (225)
+.+.++|++++++.+..++ ....++||+||||||||++|+++++.++.+++.+++..- ....+
T Consensus 25 ~~~~i~g~~~~~~~l~~~l----------------~~~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l 88 (331)
T 2r44_A 25 VGKVVVGQKYMINRLLIGI----------------CTGGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDL 88 (331)
T ss_dssp HTTTCCSCHHHHHHHHHHH----------------HHTCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHH
T ss_pred hccceeCcHHHHHHHHHHH----------------HcCCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhc
Confidence 4567899999999988776 334699999999999999999999999999998887421 10001
Q ss_pred cCCcHHHHHHHHHHhcchhh----hhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccC
Q psy5910 82 VGDDVESIIQKLLHECDYDV----ELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKN 157 (225)
Q Consensus 82 ~g~~~~~~~~~~~~~~~~~~----~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~ 157 (225)
.|... +....+.. .....+|+||||++.+.+. .++.|++.|+.....+.. ....
T Consensus 89 ~g~~~-------~~~~~~~~~~~~g~l~~~vl~iDEi~~~~~~-------------~~~~Ll~~l~~~~~~~~g--~~~~ 146 (331)
T 2r44_A 89 IGTMI-------YNQHKGNFEVKKGPVFSNFILADEVNRSPAK-------------VQSALLECMQEKQVTIGD--TTYP 146 (331)
T ss_dssp HEEEE-------EETTTTEEEEEECTTCSSEEEEETGGGSCHH-------------HHHHHHHHHHHSEEEETT--EEEE
T ss_pred CCcee-------ecCCCCceEeccCcccccEEEEEccccCCHH-------------HHHHHHHHHhcCceeeCC--EEEE
Confidence 11100 00000000 0112479999999998866 789999999875443321 1111
Q ss_pred CCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 158 PSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 158 ~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
...+ +++++|+|..-. .+ ...+++++++||+..+.++.|+.+.
T Consensus 147 ~~~~--~~viat~np~~~-~~-~~~l~~~l~~Rf~~~i~i~~p~~~~ 189 (331)
T 2r44_A 147 LDNP--FLVLATQNPVEQ-EG-TYPLPEAQVDRFMMKIHLTYLDKES 189 (331)
T ss_dssp CCSS--CEEEEEECTTCC-SC-CCCCCHHHHTTSSEEEECCCCCHHH
T ss_pred CCCC--EEEEEecCCCcc-cC-cccCCHHHHhheeEEEEcCCCCHHH
Confidence 1122 677777775210 00 1148999999998777777776554
No 44
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.71 E-value=9e-20 Score=161.11 Aligned_cols=173 Identities=18% Similarity=0.184 Sum_probs=104.0
Q ss_pred CcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCcc
Q psy5910 3 LDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYV 82 (225)
Q Consensus 3 l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~ 82 (225)
+...|+|++++++.+..++.. +..+...+ .......++||+||||||||++|+++|+.++...+..... ....++.
T Consensus 293 l~~~I~G~e~vk~al~~~l~~--g~~~~~~~-~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~-~~~~~l~ 368 (595)
T 3f9v_A 293 IAPSIYGHWELKEALALALFG--GVPKVLED-TRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKG-STAAGLT 368 (595)
T ss_dssp TSSTTSCCHHHHHHHTTTTTC--CCCEETTT-TEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTC-STTTTSE
T ss_pred hcchhcChHHHHHHHHHHHhC--CCcccccC-CCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCc-ccccccc
Confidence 456789999999888665521 11111222 2222334899999999999999999999987654442110 1111121
Q ss_pred CCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCC
Q psy5910 83 GDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNP 162 (225)
Q Consensus 83 g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~ 162 (225)
+..........+....+.+..+.++|+||||++++.+. .++.|+++|+.....+...+.......+
T Consensus 369 ~~~~~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~~~-------------~q~~Ll~~le~~~i~i~~~g~~~~~~~~- 434 (595)
T 3f9v_A 369 AAVVREKGTGEYYLEAGALVLADGGIAVIDEIDKMRDE-------------DRVAIHEAMEQQTVSIAKAGIVAKLNAR- 434 (595)
T ss_dssp EECSSGGGTSSCSEEECHHHHHSSSEECCTTTTCCCSH-------------HHHHHHHHHHSSSEEEESSSSEEEECCC-
T ss_pred ceeeeccccccccccCCeeEecCCCcEEeehhhhCCHh-------------HhhhhHHHHhCCEEEEecCCcEEEecCc-
Confidence 11100000011111123344567899999999999877 7999999999866554333322222233
Q ss_pred ceeEEecCcceeeccCcc------ccHHHHHHhhcccc
Q psy5910 163 QVFNIDTTNILFIAGGAF------SGIENFIINRINQE 194 (225)
Q Consensus 163 ~~~~i~ttn~~~i~~~~~------~~l~~al~~Rf~~~ 194 (225)
+.+|+|+|..+-..... -.+++++++|||..
T Consensus 435 -~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~ 471 (595)
T 3f9v_A 435 -AAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLI 471 (595)
T ss_dssp -CEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCC
T ss_pred -eEEEEEcCCcCCccCcccCchhccCCCHHHHhhCeEE
Confidence 88999999852100000 17899999999865
No 45
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.71 E-value=2.4e-18 Score=125.32 Aligned_cols=136 Identities=15% Similarity=0.187 Sum_probs=93.7
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD 84 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~ 84 (225)
-.++|++++++.+.+.+.... ....+|||+||||||||++|+++++..+ +++.++|..+... +
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~------------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~-~--- 66 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAA------------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLID-M--- 66 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHH------------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHH-C---
T ss_pred cCceeCCHHHHHHHHHHHHHh------------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChH-h---
Confidence 357899999988888763211 2345899999999999999999999887 8999998776431 1
Q ss_pred cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910 85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV 164 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~ 164 (225)
....+.. ..++++||||++.+... .|..|+++|+... ..+ +
T Consensus 67 -----~~~~~~~-------a~~~~l~lDei~~l~~~-------------~q~~Ll~~l~~~~------------~~~--~ 107 (143)
T 3co5_A 67 -----PMELLQK-------AEGGVLYVGDIAQYSRN-------------IQTGITFIIGKAE------------RCR--V 107 (143)
T ss_dssp -----HHHHHHH-------TTTSEEEEEECTTCCHH-------------HHHHHHHHHHHHT------------TTT--C
T ss_pred -----hhhHHHh-------CCCCeEEEeChHHCCHH-------------HHHHHHHHHHhCC------------CCC--E
Confidence 2233332 46789999999999876 7889999998531 122 7
Q ss_pred eEEecCcceeeccCccccHHHHHHhhcccc-cccc
Q psy5910 165 FNIDTTNILFIAGGAFSGIENFIINRINQE-TNFL 198 (225)
Q Consensus 165 ~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~-i~~~ 198 (225)
.+|+|||...-.. ... +++.+..||... |..|
T Consensus 108 ~iI~~tn~~~~~~-~~~-~~~~L~~rl~~~~i~lP 140 (143)
T 3co5_A 108 RVIASCSYAAGSD-GIS-CEEKLAGLFSESVVRIP 140 (143)
T ss_dssp EEEEEEEECTTTC---C-HHHHHHHHSSSEEEEEC
T ss_pred EEEEecCCCHHHH-HhC-ccHHHHHHhcCcEEeCC
Confidence 8888888743221 122 777888886544 5544
No 46
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.71 E-value=1.5e-17 Score=138.90 Aligned_cols=161 Identities=16% Similarity=0.233 Sum_probs=98.6
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCC--CeEEeccCccccc---
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINV--PIIVVDATSFTEA--- 79 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~--~~~~~~~~~~~~~--- 79 (225)
+.++|++.+++.+...+...... ..+..++||+||||||||++|+++++.++. +++.+++..+...
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~---------~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 114 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREG---------KIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMS 114 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTT---------CCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSC
T ss_pred hhccChHHHHHHHHHHHHHHHcC---------CCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccc
Confidence 45799999988754433111111 023358999999999999999999999974 7877776553221
Q ss_pred ---------------------------------------------CccCCcHHHHHHHHHHhcchhhhh-----hCCCEE
Q psy5910 80 ---------------------------------------------GYVGDDVESIIQKLLHECDYDVEL-----AEQSII 109 (225)
Q Consensus 80 ---------------------------------------------~~~g~~~~~~~~~~~~~~~~~~~~-----~~~~vl 109 (225)
++.|.. ...++..+..+...... ..++||
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~g~~~~~~~vl 193 (368)
T 3uk6_A 115 KTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEI-KSEVREQINAKVAEWREEGKAEIIPGVL 193 (368)
T ss_dssp HHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC--------CHHHHHHHHHHHHHHHHHTC---CBCEE
T ss_pred hhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCccccc-HHHHHHHHHHHHHHhhhhccccccCceE
Confidence 011110 11122222221110011 125799
Q ss_pred EEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCccee-eccC---ccccHHH
Q psy5910 110 YIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILF-IAGG---AFSGIEN 185 (225)
Q Consensus 110 ~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~-i~~~---~~~~l~~ 185 (225)
||||++.+.+. .++.|++.++.... . ++++++.+.+. +.+. .+..+++
T Consensus 194 ~IDEi~~l~~~-------------~~~~L~~~le~~~~-------------~--~~ii~t~~~~~~i~~t~~~~~~~l~~ 245 (368)
T 3uk6_A 194 FIDEVHMLDIE-------------SFSFLNRALESDMA-------------P--VLIMATNRGITRIRGTSYQSPHGIPI 245 (368)
T ss_dssp EEESGGGSBHH-------------HHHHHHHHTTCTTC-------------C--EEEEEESCSEEECBTSSCEEETTCCH
T ss_pred EEhhccccChH-------------HHHHHHHHhhCcCC-------------C--eeeeecccceeeeeccCCCCcccCCH
Confidence 99999999866 78999999975321 1 55555554332 2222 2457999
Q ss_pred HHHhhcccccccccccccc
Q psy5910 186 FIINRINQETNFLEKLNNN 204 (225)
Q Consensus 186 al~~Rf~~~i~~~~~~~~~ 204 (225)
++++||.. +.|+.|+.++
T Consensus 246 ~l~sR~~~-i~~~~~~~~e 263 (368)
T 3uk6_A 246 DLLDRLLI-VSTTPYSEKD 263 (368)
T ss_dssp HHHTTEEE-EEECCCCHHH
T ss_pred HHHhhccE-EEecCCCHHH
Confidence 99999977 7888887665
No 47
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.71 E-value=7.9e-18 Score=126.86 Aligned_cols=155 Identities=22% Similarity=0.293 Sum_probs=95.7
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh----------CCCeEEeccC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII----------NVPIIVVDAT 74 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~----------~~~~~~~~~~ 74 (225)
+.++|+++.++.+.+.+.. ...++++|+||||||||++|+++++.+ +.+++.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~--------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSR--------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLS 87 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTS--------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHH
T ss_pred chhhcchHHHHHHHHHHhC--------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHH
Confidence 3578999988888776611 223588999999999999999999987 6667777765
Q ss_pred ccccc-CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccc
Q psy5910 75 SFTEA-GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLA 153 (225)
Q Consensus 75 ~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~ 153 (225)
.+... .+.+. ....+..++... .....+.+++|||++.+...+.... ....+.+.|...++...
T Consensus 88 ~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~vl~iDe~~~l~~~~~~~~----~~~~~~~~l~~~~~~~~------- 152 (187)
T 2p65_A 88 SLIAGAKYRGD-FEERLKSILKEV---QDAEGQVVMFIDEIHTVVGAGAVAE----GALDAGNILKPMLARGE------- 152 (187)
T ss_dssp HHHHHCCSHHH-HHHHHHHHHHHH---HHTTTSEEEEETTGGGGSSSSSSCT----TSCCTHHHHHHHHHTTC-------
T ss_pred HhhcCCCchhH-HHHHHHHHHHHH---HhcCCceEEEEeCHHHhcccccccc----cchHHHHHHHHHHhcCC-------
Confidence 54321 12221 122233333322 0112567999999999985532110 01125667777776421
Q ss_pred cccCCCCCCceeEEecCcceeeccCccccHHHHHHhhccccccccccc
Q psy5910 154 EKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKL 201 (225)
Q Consensus 154 ~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~ 201 (225)
+.+|+++|..-.. ....+++++++||.. +.++.|+
T Consensus 153 ----------~~ii~~~~~~~~~--~~~~~~~~l~~R~~~-i~i~~p~ 187 (187)
T 2p65_A 153 ----------LRCIGATTVSEYR--QFIEKDKALERRFQQ-ILVEQPS 187 (187)
T ss_dssp ----------SCEEEEECHHHHH--HHTTTCHHHHHHEEE-EECCSCC
T ss_pred ----------eeEEEecCHHHHH--HHHhccHHHHHhcCc-ccCCCCC
Confidence 6677777761100 001478999999985 7776664
No 48
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.71 E-value=3.1e-18 Score=141.97 Aligned_cols=163 Identities=15% Similarity=0.207 Sum_probs=95.9
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeE----EeccCcccccC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPII----VVDATSFTEAG 80 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~----~~~~~~~~~~~ 80 (225)
+.++|++++++.+...+. ....+++||+||||||||++|+++++.++.... .++|.......
T Consensus 24 ~~i~G~~~~~~~l~~~~~--------------~~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~ 89 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAV--------------DPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIP 89 (350)
T ss_dssp GGSCSCHHHHHHHHHHHH--------------CGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSC
T ss_pred hhccChHHHHHHHHHHhh--------------CCCCceEEEECCCCccHHHHHHHHHHhCcccccccccccccccccccc
Confidence 347999988776544331 012357999999999999999999998863110 01222111000
Q ss_pred ----------------c----cCCcHHHHH-----HHHHHhc-----chhhhhhCCCEEEEcchhhhcccccccCCCCCC
Q psy5910 81 ----------------Y----VGDDVESII-----QKLLHEC-----DYDVELAEQSIIYIDEIDKISKKTDVVSGKDVS 130 (225)
Q Consensus 81 ----------------~----~g~~~~~~~-----~~~~~~~-----~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~ 130 (225)
+ .+......+ ...+... .+.+....++++||||++.+.+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~---------- 159 (350)
T 1g8p_A 90 DWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDH---------- 159 (350)
T ss_dssp TTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHH----------
T ss_pred chhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHH----------
Confidence 0 111111111 1111111 12233456889999999999876
Q ss_pred hHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccc
Q psy5910 131 GEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLN 202 (225)
Q Consensus 131 ~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~ 202 (225)
.++.|+..|+.....+...+.......+ +++|+|+|.. ...+++++++||+..+.++.|..
T Consensus 160 ---~~~~Ll~~le~~~~~~~~~g~~~~~~~~--~~li~~~n~~------~~~l~~~L~~R~~~~~~l~~~~~ 220 (350)
T 1g8p_A 160 ---IVDLLLDVAQSGENVVERDGLSIRHPAR--FVLVGSGNPE------EGDLRPQLLDRFGLSVEVLSPRD 220 (350)
T ss_dssp ---HHHHHHHHHHHSEEEECCTTCCEEEECC--EEEEEEECSC------SCCCCHHHHTTCSEEEECCCCCS
T ss_pred ---HHHHHHHHHhcCceEEEecceEEeeCCc--eEEEEEeCCC------CCCCCHHHHhhcceEEEcCCCCc
Confidence 7899999998643222222211111112 7788888761 12689999999988788877743
No 49
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.70 E-value=8.5e-18 Score=127.05 Aligned_cols=156 Identities=19% Similarity=0.269 Sum_probs=95.8
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh----------CCCeEEeccC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII----------NVPIIVVDAT 74 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~----------~~~~~~~~~~ 74 (225)
+.++|+++.++.+...+.. ....+++|+||||||||++|+++++.+ +.+++.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~--------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMG 87 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTS--------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHH
T ss_pred cccccchHHHHHHHHHHhc--------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHH
Confidence 4578999998888776521 123579999999999999999999986 6778888776
Q ss_pred cccc-cCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccc
Q psy5910 75 SFTE-AGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLA 153 (225)
Q Consensus 75 ~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~ 153 (225)
.+.. ..+.+. ....+..++... .....+.+++|||++.+........ ...+++.|..+++...
T Consensus 88 ~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~vl~iDe~~~l~~~~~~~~-----~~~~~~~l~~~~~~~~------- 151 (195)
T 1jbk_A 88 ALVAGAKYRGE-FEERLKGVLNDL---AKQEGNVILFIDELHTMVGAGKADG-----AMDAGNMLKPALARGE------- 151 (195)
T ss_dssp HHHTTTCSHHH-HHHHHHHHHHHH---HHSTTTEEEEEETGGGGTT-----------CCCCHHHHHHHHHTTS-------
T ss_pred HHhccCCcccc-HHHHHHHHHHHH---hhcCCCeEEEEeCHHHHhccCcccc-----hHHHHHHHHHhhccCC-------
Confidence 5532 112221 122333333322 1123567999999999975532110 0114666666665321
Q ss_pred cccCCCCCCceeEEecCcceeeccCccccHHHHHHhhccccccccccccc
Q psy5910 154 EKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNN 203 (225)
Q Consensus 154 ~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~ 203 (225)
+.+|.++|..-.. ....+++++++||. .+.++.|+.+
T Consensus 152 ----------~~~i~~~~~~~~~--~~~~~~~~l~~r~~-~i~~~~p~~~ 188 (195)
T 1jbk_A 152 ----------LHCVGATTLDEYR--QYIEKDAALERRFQ-KVFVAEPSVE 188 (195)
T ss_dssp ----------CCEEEEECHHHHH--HHTTTCHHHHTTEE-EEECCCCCHH
T ss_pred ----------eEEEEeCCHHHHH--HHHhcCHHHHHHhc-eeecCCCCHH
Confidence 5666666651100 00156899999997 4777777765
No 50
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.69 E-value=1.2e-17 Score=153.45 Aligned_cols=172 Identities=26% Similarity=0.348 Sum_probs=108.4
Q ss_pred cceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCccccc-
Q psy5910 4 DRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEA- 79 (225)
Q Consensus 4 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~- 79 (225)
.+.|+||+.+++.+...+.....+... ...+..++||+||||||||++|+++++.+ +.+++.++|+.+...
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~g~~~-----~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~ 631 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARAGLKD-----PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKH 631 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGGGCSC-----SSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSG
T ss_pred hcccCCcHHHHHHHHHHHHHHhcccCC-----CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchh
Confidence 356899999999998877433221100 01223478999999999999999999998 788999999876532
Q ss_pred ----------CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCc
Q psy5910 80 ----------GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSI 149 (225)
Q Consensus 80 ----------~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~ 149 (225)
+|.|......+...+ ....++||||||++++.+. +++.|+++|+.....
T Consensus 632 ~~s~l~g~~~~~~G~~~~g~l~~~~-------~~~~~~vl~lDEi~~l~~~-------------~~~~Ll~~l~~~~~~- 690 (854)
T 1qvr_A 632 AVSRLIGAPPGYVGYEEGGQLTEAV-------RRRPYSVILFDEIEKAHPD-------------VFNILLQILDDGRLT- 690 (854)
T ss_dssp GGGGC--------------CHHHHH-------HHCSSEEEEESSGGGSCHH-------------HHHHHHHHHTTTEEC-
T ss_pred HHHHHcCCCCCCcCccccchHHHHH-------HhCCCeEEEEecccccCHH-------------HHHHHHHHhccCceE-
Confidence 233433212222222 2345789999999999877 899999999975433
Q ss_pred cccccccCCCCCCceeEEecCccee--ecc----C-c------------cccHHHHHHhhcccccccccccccc
Q psy5910 150 TSLAEKKNPSQNPQVFNIDTTNILF--IAG----G-A------------FSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 150 ~~~~~~~~~~~~~~~~~i~ttn~~~--i~~----~-~------------~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
...++..+..+ .++|+|||..- +.. + . ...+.+.++.||+..+.|.++..+.
T Consensus 691 -~~~g~~vd~~~--~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~ed 761 (854)
T 1qvr_A 691 -DSHGRTVDFRN--TVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQ 761 (854)
T ss_dssp -CSSSCCEECTT--EEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHH
T ss_pred -CCCCCEeccCC--eEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHH
Confidence 11222222333 67888888610 000 0 0 0123467778998888887777654
No 51
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.68 E-value=2.3e-17 Score=141.09 Aligned_cols=138 Identities=20% Similarity=0.293 Sum_probs=91.2
Q ss_pred eeechhhHH---hhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCcc
Q psy5910 6 HIIGQHETK---KIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYV 82 (225)
Q Consensus 6 ~i~G~~~~~---~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~ 82 (225)
.++||++++ ..|...+.. ....++||+||||||||++|++|++.++.+++.+++....
T Consensus 27 ~ivGq~~~~~~~~~L~~~i~~--------------~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~----- 87 (447)
T 3pvs_A 27 QYIGQQHLLAAGKPLPRAIEA--------------GHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSG----- 87 (447)
T ss_dssp TCCSCHHHHSTTSHHHHHHHH--------------TCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCC-----
T ss_pred HhCCcHHHHhchHHHHHHHHc--------------CCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCC-----
Confidence 468999998 556555511 1114799999999999999999999999999998874431
Q ss_pred CCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCC
Q psy5910 83 GDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNP 162 (225)
Q Consensus 83 g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~ 162 (225)
...++..+..+........+++|||||++.+... .++.|+..|+...
T Consensus 88 ----~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~-------------~q~~LL~~le~~~---------------- 134 (447)
T 3pvs_A 88 ----VKEIREAIERARQNRNAGRRTILFVDEVHRFNKS-------------QQDAFLPHIEDGT---------------- 134 (447)
T ss_dssp ----HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-------------------CCHHHHHTTS----------------
T ss_pred ----HHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH-------------HHHHHHHHHhcCc----------------
Confidence 1223334433322223357899999999999866 6888999998632
Q ss_pred ceeEEecC--cceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 163 QVFNIDTT--NILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 163 ~~~~i~tt--n~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
+.+|.+| |. ...+++++++|+. .+.++.++.+.
T Consensus 135 -v~lI~att~n~-------~~~l~~aL~sR~~-v~~l~~l~~ed 169 (447)
T 3pvs_A 135 -ITFIGATTENP-------SFELNSALLSRAR-VYLLKSLSTED 169 (447)
T ss_dssp -CEEEEEESSCG-------GGSSCHHHHTTEE-EEECCCCCHHH
T ss_pred -eEEEecCCCCc-------ccccCHHHhCcee-EEeeCCcCHHH
Confidence 4444433 44 3478999999986 45566666554
No 52
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.68 E-value=1.5e-17 Score=136.54 Aligned_cols=156 Identities=21% Similarity=0.270 Sum_probs=104.9
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD 84 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~ 84 (225)
+.++|++.+++.+...+...... .....++||+||||||||++|+++++.++.+++.+++..+..
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~---------~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~------ 76 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKAR---------KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK------ 76 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHH---------CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS------
T ss_pred HHhhCHHHHHHHHHHHHHHHHcc---------CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC------
Confidence 45799999999888766322110 012358999999999999999999999999999998876532
Q ss_pred cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCcccccc-----ccCCC
Q psy5910 85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAE-----KKNPS 159 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~-----~~~~~ 159 (225)
...+...+.. ....++++||||++.+... .+..|+..|+......-.... ...+.
T Consensus 77 --~~~l~~~l~~-----~~~~~~~l~lDEi~~l~~~-------------~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~ 136 (324)
T 1hqc_A 77 --PGDLAAILAN-----SLEEGDILFIDEIHRLSRQ-------------AEEHLYPAMEDFVMDIVIGQGPAARTIRLEL 136 (324)
T ss_dssp --HHHHHHHHTT-----TCCTTCEEEETTTTSCCHH-------------HHHHHHHHHHHSEEEECCSSSSSCCCEEEEC
T ss_pred --hHHHHHHHHH-----hccCCCEEEEECCcccccc-------------hHHHHHHHHHhhhhHHhccccccccccccCC
Confidence 1112222222 1246889999999999866 688899999864321100000 00011
Q ss_pred CCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 160 QNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 160 ~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
.+ +.+|++||. ...+++++.+||+..+.++.|+.+.
T Consensus 137 ~~--~~~i~~t~~-------~~~~~~~l~~R~~~~i~l~~~~~~e 172 (324)
T 1hqc_A 137 PR--FTLIGATTR-------PGLITAPLLSRFGIVEHLEYYTPEE 172 (324)
T ss_dssp CC--CEEEEEESC-------CSSCSCSTTTTCSCEEECCCCCHHH
T ss_pred CC--EEEEEeCCC-------cccCCHHHHhcccEEEecCCCCHHH
Confidence 12 677777776 4567888899997777777777654
No 53
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.68 E-value=1.3e-17 Score=144.16 Aligned_cols=161 Identities=15% Similarity=0.194 Sum_probs=98.6
Q ss_pred CcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCC--CeEEeccCcccccC
Q psy5910 3 LDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINV--PIIVVDATSFTEAG 80 (225)
Q Consensus 3 l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~--~~~~~~~~~~~~~~ 80 (225)
+.+.|+|++++++.+..++ ....++||+||||||||++|+++|+.++. ++..+++.......
T Consensus 20 l~~~ivGq~~~i~~l~~al----------------~~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~d 83 (500)
T 3nbx_X 20 LEKGLYERSHAIRLCLLAA----------------LSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEE 83 (500)
T ss_dssp HHTTCSSCHHHHHHHHHHH----------------HHTCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHH
T ss_pred HHhhhHHHHHHHHHHHHHH----------------hcCCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHH
Confidence 4577899999999988776 45579999999999999999999998843 45555553211111
Q ss_pred ccCC-cHHHH-HHHHHHhcc-hhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccC
Q psy5910 81 YVGD-DVESI-IQKLLHECD-YDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKN 157 (225)
Q Consensus 81 ~~g~-~~~~~-~~~~~~~~~-~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~ 157 (225)
+.|. ..... -...+..+. +. ...++|+||||++++.+. +++.|+.+|++....+.. ...
T Consensus 84 L~G~~~~~~~~~~g~~~~~~~g~--l~~~~IL~IDEI~r~~~~-------------~q~~LL~~lee~~v~i~G---~~~ 145 (500)
T 3nbx_X 84 VFGPLSIQALKDEGRYERLTSGY--LPEAEIVFLDEIWKAGPA-------------ILNTLLTAINERQFRNGA---HVE 145 (500)
T ss_dssp HHCCBC----------CBCCTTS--GGGCSEEEEESGGGCCHH-------------HHHHHHHHHHSSEEECSS---SEE
T ss_pred hcCcccHHHHhhchhHHhhhccC--CCcceeeeHHhHhhhcHH-------------HHHHHHHHHHHHhccCCC---CcC
Confidence 2221 10100 011111110 11 114679999999998866 899999999875544311 111
Q ss_pred CCCCCceeEEecCcceeeccCccccHHHHHHhhccccccccccccc
Q psy5910 158 PSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNN 203 (225)
Q Consensus 158 ~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~ 203 (225)
.... .++|.+||.+- ......+++++||...+.++.|+.+
T Consensus 146 ~~~~--~~iI~ATN~lp----e~~~~~~aLldRF~~~i~v~~p~~~ 185 (500)
T 3nbx_X 146 KIPM--RLLVAASNELP----EADSSLEALYDRMLIRLWLDKVQDK 185 (500)
T ss_dssp ECCC--CEEEEEESSCC----CTTCTTHHHHTTCCEEEECCSCCCH
T ss_pred Ccch--hhhhhccccCC----CccccHHHHHHHHHHHHHHHHhhhh
Confidence 1111 24566666411 0123457999999887887777763
No 54
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.67 E-value=5.8e-17 Score=132.25 Aligned_cols=168 Identities=17% Similarity=0.237 Sum_probs=100.7
Q ss_pred cceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCccccc-
Q psy5910 4 DRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEA- 79 (225)
Q Consensus 4 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~- 79 (225)
++.++|++.+++.+.+.+... .....+|||+||||||||++|+++++.+ +.+++.++|..+...
T Consensus 1 ~~~iig~s~~~~~~~~~~~~~------------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l 68 (304)
T 1ojl_A 1 GSHMIGSSPAMQHLLNEIAMV------------APSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESL 68 (304)
T ss_dssp --CCCCCSHHHHHHHHHHHHH------------CSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHH
T ss_pred CCCcEECCHHHHHHHHHHHHH------------hCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHH
Confidence 356899999988887766221 1234689999999999999999999976 578999999876321
Q ss_pred ---CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCcccccccc
Q psy5910 80 ---GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKK 156 (225)
Q Consensus 80 ---~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~ 156 (225)
.+.|.... .+........+.+....+++|||||++.+... .|..|+.+|+..... ..++..
T Consensus 69 ~~~~lfg~~~g-~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~~-------------~q~~Ll~~l~~~~~~--~~g~~~ 132 (304)
T 1ojl_A 69 LESELFGHEKG-AFTGADKRREGRFVEADGGTLFLDEIGDISPL-------------MQVRLLRAIQEREVQ--RVGSNQ 132 (304)
T ss_dssp HHHHHTCCCSS-CCC---CCCCCHHHHHTTSEEEEESCTTCCHH-------------HHHHHHHHHHSSBCC--BTTBCC
T ss_pred HHHHhcCcccc-ccCchhhhhcCHHHhcCCCEEEEeccccCCHH-------------HHHHHHHHHhcCEee--ecCCcc
Confidence 00111000 00000001112334457899999999999876 799999999875332 222222
Q ss_pred CCCCCCceeEEecCcceeeccCccccHHHHHHhhcccc-ccccccc
Q psy5910 157 NPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQE-TNFLEKL 201 (225)
Q Consensus 157 ~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~-i~~~~~~ 201 (225)
....+ +.+|++||...-..-....+++.+..||... |.+|+..
T Consensus 133 ~~~~~--~riI~atn~~l~~~v~~g~fr~~L~~Rl~~~~i~lPpL~ 176 (304)
T 1ojl_A 133 TISVD--VRLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLR 176 (304)
T ss_dssp CCBCC--CEEEEEESSCHHHHHHHTSSCHHHHHHHSSEEEECCCSG
T ss_pred cccCC--eEEEEecCccHHHHHHhCCcHHHHHhhcCeeEEeccCHH
Confidence 22223 7888888872100000011345666777533 6666554
No 55
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.66 E-value=1.3e-16 Score=127.49 Aligned_cols=168 Identities=18% Similarity=0.209 Sum_probs=97.0
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhC---CCeEEeccCccccc--
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIIN---VPIIVVDATSFTEA-- 79 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~---~~~~~~~~~~~~~~-- 79 (225)
+.++|++.++..+.+.+.... ....++||+||||||||++|+++++.++ .+++.++|+.+...
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~------------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~ 73 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLA------------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHT------------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHH
T ss_pred ccceeCCHHHHHHHHHHHHHh------------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHH
Confidence 346899998888776552211 1235899999999999999999999874 68999999876321
Q ss_pred --CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccC
Q psy5910 80 --GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKN 157 (225)
Q Consensus 80 --~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~ 157 (225)
.+.|.. ............+.+....+++|||||++.+... +|..|+++|+..... ..+....
T Consensus 74 ~~~l~g~~-~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~~-------------~q~~Ll~~l~~~~~~--~~g~~~~ 137 (265)
T 2bjv_A 74 DSELFGHE-AGAFTGAQKRHPGRFERADGGTLFLDELATAPMM-------------VQEKLLRVIEYGELE--RVGGSQP 137 (265)
T ss_dssp HHHHHCCC----------CCCCHHHHTTTSEEEEESGGGSCHH-------------HHHHHHHHHHHCEEC--CCCC--C
T ss_pred HHHhcCCc-ccccccccccccchhhhcCCcEEEEechHhcCHH-------------HHHHHHHHHHhCCee--cCCCccc
Confidence 011111 0000000011122333456789999999999876 789999999864321 1111111
Q ss_pred CCCCCceeEEecCcceeeccCccccHHHHHHhhccc-ccccccccc
Q psy5910 158 PSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQ-ETNFLEKLN 202 (225)
Q Consensus 158 ~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~-~i~~~~~~~ 202 (225)
...+ +.+|+|||...-..-....+++.+.+||.. .+.+|+...
T Consensus 138 ~~~~--~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~ 181 (265)
T 2bjv_A 138 LQVN--VRLVCATNADLPAMVNEGTFRADLLDALAFDVVQLPPLRE 181 (265)
T ss_dssp EECC--CEEEEEESSCHHHHHHHTSSCHHHHHHHCSEEEECCCGGG
T ss_pred ccCC--eEEEEecCcCHHHHHHcCCccHHHHHhhcCcEEeCCChhh
Confidence 1122 677777776210000001245788889864 366665554
No 56
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.64 E-value=4.4e-17 Score=133.92 Aligned_cols=141 Identities=21% Similarity=0.195 Sum_probs=98.9
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD 84 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~ 84 (225)
+.++|++++++.+...+... ..+..+|++||||||||++|+++++.++.+++.+++++..
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~-------------~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~------- 85 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKG-------------KIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK------- 85 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTT-------------CCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC-------
T ss_pred HHHhCcHHHHHHHHHHHHcC-------------CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC-------
Confidence 34689999999998877310 1123456888899999999999999999999999986632
Q ss_pred cHHHHHHHHHHhcc-hhhhhhCCCEEEEcchhhhc-ccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCC
Q psy5910 85 DVESIIQKLLHECD-YDVELAEQSIIYIDEIDKIS-KKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNP 162 (225)
Q Consensus 85 ~~~~~~~~~~~~~~-~~~~~~~~~vl~iDEid~l~-~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~ 162 (225)
...++..+.... .......+.++||||+|.+. .. .++.|+..++... .+
T Consensus 86 --~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~-------------~~~~L~~~le~~~-------------~~- 136 (324)
T 3u61_B 86 --IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAE-------------SQRHLRSFMEAYS-------------SN- 136 (324)
T ss_dssp --HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHH-------------HHHHHHHHHHHHG-------------GG-
T ss_pred --HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHH-------------HHHHHHHHHHhCC-------------CC-
Confidence 111222222110 00011257899999999998 55 7889999998532 11
Q ss_pred ceeEEecCcceeeccCccccHHHHHHhhccccccccccccc
Q psy5910 163 QVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNN 203 (225)
Q Consensus 163 ~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~ 203 (225)
+.+|.++|. ...+++++++||. .+.|+.|+.+
T Consensus 137 -~~iI~~~n~-------~~~l~~~l~sR~~-~i~~~~~~~~ 168 (324)
T 3u61_B 137 -CSIIITANN-------IDGIIKPLQSRCR-VITFGQPTDE 168 (324)
T ss_dssp -CEEEEEESS-------GGGSCTTHHHHSE-EEECCCCCHH
T ss_pred -cEEEEEeCC-------ccccCHHHHhhCc-EEEeCCCCHH
Confidence 667777777 5588999999995 4888888754
No 57
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.63 E-value=7.5e-17 Score=138.94 Aligned_cols=134 Identities=21% Similarity=0.283 Sum_probs=86.3
Q ss_pred eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh----------CCCeEEeccCc
Q psy5910 6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII----------NVPIIVVDATS 75 (225)
Q Consensus 6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~----------~~~~~~~~~~~ 75 (225)
.|+|+++.++.+...+.. ....++||+||||||||++|+++|+.+ +.+++.++++
T Consensus 181 ~iiGr~~~i~~l~~~l~r--------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~- 245 (468)
T 3pxg_A 181 PVIGRSKEIQRVIEVLSR--------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG- 245 (468)
T ss_dssp CCCCCHHHHHHHHHHHHC--------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----
T ss_pred CccCcHHHHHHHHHHHhc--------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC-
Confidence 479999999998876621 234589999999999999999999997 7778888876
Q ss_pred ccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccc
Q psy5910 76 FTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEK 155 (225)
Q Consensus 76 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~ 155 (225)
..|.|.. ...+..++... ....++|+||| .. ..+++.|+..|+...
T Consensus 246 ---~~~~g~~-e~~~~~~~~~~----~~~~~~iLfiD-----~~------------~~a~~~L~~~L~~g~--------- 291 (468)
T 3pxg_A 246 ---TKYRGEF-EDRLKKVMDEI----RQAGNIILFID-----AA------------IDASNILKPSLARGE--------- 291 (468)
T ss_dssp -----------CTTHHHHHHHH----HTCCCCEEEEC-----C--------------------CCCTTSSS---------
T ss_pred ---ccccchH-HHHHHHHHHHH----HhcCCeEEEEe-----Cc------------hhHHHHHHHhhcCCC---------
Confidence 2355542 22334444443 33468999999 11 115677777776421
Q ss_pred cCCCCCCceeEEecCcceeeccCccc-----cHHHHHHhhcccccccccccccc
Q psy5910 156 KNPSQNPQVFNIDTTNILFIAGGAFS-----GIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 156 ~~~~~~~~~~~i~ttn~~~i~~~~~~-----~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
+.+|++||. .+ .++++++|||.. +.++.|+.+.
T Consensus 292 --------v~vI~at~~-------~e~~~~~~~~~al~~Rf~~-i~v~~p~~e~ 329 (468)
T 3pxg_A 292 --------LQCIGATTL-------DEYRKYIEKDAALERRFQP-IQVDQPSVDE 329 (468)
T ss_dssp --------CEEEEECCT-------TTTHHHHTTCSHHHHSEEE-EECCCCCHHH
T ss_pred --------EEEEecCCH-------HHHHHHhhcCHHHHHhCcc-ceeCCCCHHH
Confidence 778888877 32 588999999975 7777777665
No 58
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.62 E-value=8.8e-16 Score=118.53 Aligned_cols=144 Identities=24% Similarity=0.261 Sum_probs=95.7
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh-----CCCeEEeccCccccc
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII-----NVPIIVVDATSFTEA 79 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~-----~~~~~~~~~~~~~~~ 79 (225)
+.++|++++++.+...+.. ...++++|+||||||||++++.+++.+ ...++.+++......
T Consensus 17 ~~~~g~~~~~~~l~~~l~~--------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVER--------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGI 82 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHT--------------TCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCH
T ss_pred HHHcCcHHHHHHHHHHHhC--------------CCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccCh
Confidence 4578999999998887621 122369999999999999999999876 345676766543210
Q ss_pred CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCC
Q psy5910 80 GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPS 159 (225)
Q Consensus 80 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~ 159 (225)
......+....... ......+.+|+|||++.+... .++.|+.+++...
T Consensus 83 ----~~~~~~~~~~~~~~--~~~~~~~~vliiDe~~~l~~~-------------~~~~l~~~l~~~~------------- 130 (226)
T 2chg_A 83 ----DVVRHKIKEFARTA--PIGGAPFKIIFLDEADALTAD-------------AQAALRRTMEMYS------------- 130 (226)
T ss_dssp ----HHHHHHHHHHHTSC--CSTTCSCEEEEEETGGGSCHH-------------HHHHHHHHHHHTT-------------
T ss_pred ----HHHHHHHHHHhccc--CCCccCceEEEEeChhhcCHH-------------HHHHHHHHHHhcC-------------
Confidence 01111111111110 111246789999999999865 6788888887531
Q ss_pred CCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 160 QNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 160 ~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
.+ +.+|.++|. ...+++++.+||. .+.++.++.++
T Consensus 131 ~~--~~~i~~~~~-------~~~~~~~l~~r~~-~i~~~~~~~~~ 165 (226)
T 2chg_A 131 KS--CRFILSCNY-------VSRIIEPIQSRCA-VFRFKPVPKEA 165 (226)
T ss_dssp TT--EEEEEEESC-------GGGSCHHHHTTSE-EEECCCCCHHH
T ss_pred CC--CeEEEEeCC-------hhhcCHHHHHhCc-eeecCCCCHHH
Confidence 12 666777766 5578899999987 67777776654
No 59
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.59 E-value=7.9e-16 Score=127.49 Aligned_cols=146 Identities=17% Similarity=0.203 Sum_probs=93.8
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhC------CCeEEeccCcccc
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIIN------VPIIVVDATSFTE 78 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~------~~~~~~~~~~~~~ 78 (225)
+.++|++++++.+...+.. ...+++||+||||||||++|+++++.++ ..+..+++.+...
T Consensus 37 ~~i~g~~~~~~~l~~~l~~--------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 102 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKS--------------ANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERG 102 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTC--------------TTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCC
T ss_pred HHhhCCHHHHHHHHHHHhc--------------CCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccc
Confidence 3478999999998887621 1124699999999999999999998864 3577777765321
Q ss_pred cCccCCcHHHHHHHHHHhcch--------hhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCcc
Q psy5910 79 AGYVGDDVESIIQKLLHECDY--------DVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSIT 150 (225)
Q Consensus 79 ~~~~g~~~~~~~~~~~~~~~~--------~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ 150 (225)
..... ..+......... ......+.|++|||++.+.+. .++.|++.|+...
T Consensus 103 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~-------------~~~~Ll~~le~~~---- 161 (353)
T 1sxj_D 103 ISIVR----EKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTAD-------------AQSALRRTMETYS---- 161 (353)
T ss_dssp HHHHT----THHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHH-------------HHHHHHHHHHHTT----
T ss_pred hHHHH----HHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHH-------------HHHHHHHHHHhcC----
Confidence 11111 111111110000 000124569999999999876 6889999998632
Q ss_pred ccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 151 SLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 151 ~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
.. ..+|.++|. +..+++++++|+. .+.|+.++.++
T Consensus 162 ---------~~--~~~il~~~~-------~~~l~~~l~sR~~-~i~~~~~~~~~ 196 (353)
T 1sxj_D 162 ---------GV--TRFCLICNY-------VTRIIDPLASQCS-KFRFKALDASN 196 (353)
T ss_dssp ---------TT--EEEEEEESC-------GGGSCHHHHHHSE-EEECCCCCHHH
T ss_pred ---------CC--ceEEEEeCc-------hhhCcchhhccCc-eEEeCCCCHHH
Confidence 11 444455555 5578899999986 57777666654
No 60
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.59 E-value=3e-16 Score=142.58 Aligned_cols=134 Identities=21% Similarity=0.284 Sum_probs=88.1
Q ss_pred eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh----------CCCeEEeccCc
Q psy5910 6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII----------NVPIIVVDATS 75 (225)
Q Consensus 6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~----------~~~~~~~~~~~ 75 (225)
.++|+++.++.+...+.. ....++||+||||||||++|+++|+.+ +.+++.+++
T Consensus 181 ~iiG~~~~i~~l~~~l~~--------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~-- 244 (758)
T 3pxi_A 181 PVIGRSKEIQRVIEVLSR--------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM-- 244 (758)
T ss_dssp CCCCCHHHHHHHHHHHHC--------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----
T ss_pred CccCchHHHHHHHHHHhC--------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc--
Confidence 579999999999876621 234589999999999999999999997 777888877
Q ss_pred ccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccc
Q psy5910 76 FTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEK 155 (225)
Q Consensus 76 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~ 155 (225)
...|.|+. +..+..++..+ ....++|+||| ... .+++.|+..|+...
T Consensus 245 --g~~~~G~~-e~~l~~~~~~~----~~~~~~iLfiD-----~~~------------~~~~~L~~~l~~~~--------- 291 (758)
T 3pxi_A 245 --GTKYRGEF-EDRLKKVMDEI----RQAGNIILFID-----AAI------------DASNILKPSLARGE--------- 291 (758)
T ss_dssp -----------CTTHHHHHHHH----HTCCCCEEEEC-----C--------------------CCCTTSSS---------
T ss_pred --cccccchH-HHHHHHHHHHH----HhcCCEEEEEc-----Cch------------hHHHHHHHHHhcCC---------
Confidence 22456543 33445555544 34578999999 111 15677777776321
Q ss_pred cCCCCCCceeEEecCcceeeccCccc-----cHHHHHHhhcccccccccccccc
Q psy5910 156 KNPSQNPQVFNIDTTNILFIAGGAFS-----GIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 156 ~~~~~~~~~~~i~ttn~~~i~~~~~~-----~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
+.+|++||. .+ .++++++|||. .+.++.|+.+.
T Consensus 292 --------v~~I~at~~-------~~~~~~~~~d~al~rRf~-~i~v~~p~~~~ 329 (758)
T 3pxi_A 292 --------LQCIGATTL-------DEYRKYIEKDAALERRFQ-PIQVDQPSVDE 329 (758)
T ss_dssp --------CEEEEECCT-------TTTHHHHTTCSHHHHSEE-EEECCCCCHHH
T ss_pred --------EEEEeCCCh-------HHHHHHhhccHHHHhhCc-EEEeCCCCHHH
Confidence 778888877 33 58999999994 48888887765
No 61
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.56 E-value=1.6e-16 Score=134.41 Aligned_cols=182 Identities=9% Similarity=0.031 Sum_probs=103.3
Q ss_pred CcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHH-HHHhCCCeEEeccCcccccCc
Q psy5910 3 LDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTL-AKIINVPIIVVDATSFTEAGY 81 (225)
Q Consensus 3 l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~i-a~~~~~~~~~~~~~~~~~~~~ 81 (225)
+.. |+||+.+|..|.-++. ++... ....-||||.|+||| ||++|+++ ++.+....+ ..+......+.
T Consensus 212 Iap-I~G~e~vK~aLll~L~---GG~~k------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~f-t~g~~ss~~gL 279 (506)
T 3f8t_A 212 IAP-LPGAEEVGKMLALQLF---SCVGK------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVY-VDLRRTELTDL 279 (506)
T ss_dssp HCC-STTCHHHHHHHHHHHT---TCCSS------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEE-EEGGGCCHHHH
T ss_pred hcc-cCCCHHHHHHHHHHHc---CCccc------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEE-ecCCCCCccCc
Confidence 446 8999999888876661 11100 012238999999999 99999999 777644332 22110000001
Q ss_pred cCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCC
Q psy5910 82 VGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQN 161 (225)
Q Consensus 82 ~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~ 161 (225)
.+. .... .. +....|.+..+.++++|+||++++.++ .|.+|++.|++...++. + ... ..+
T Consensus 280 t~s-~r~~-tG-~~~~~G~l~LAdgGvl~lDEIn~~~~~-------------~qsaLlEaMEe~~VtI~--G-~~l-par 339 (506)
T 3f8t_A 280 TAV-LKED-RG-WALRAGAAVLADGGILAVDHLEGAPEP-------------HRWALMEAMDKGTVTVD--G-IAL-NAR 339 (506)
T ss_dssp SEE-EEES-SS-EEEEECHHHHTTTSEEEEECCTTCCHH-------------HHHHHHHHHHHSEEEET--T-EEE-ECC
T ss_pred eEE-EEcC-CC-cccCCCeeEEcCCCeeehHhhhhCCHH-------------HHHHHHHHHhCCcEEEC--C-EEc-CCC
Confidence 100 0000 11 112234455567899999999999987 89999999998776655 2 222 233
Q ss_pred CceeEEecCcceeeccC----ccccHHHHHHhhcccc---ccccccccccchhcccCChhHHHH
Q psy5910 162 PQVFNIDTTNILFIAGG----AFSGIENFIINRINQE---TNFLEKLNNNYNLICETNTEDLIN 218 (225)
Q Consensus 162 ~~~~~i~ttn~~~i~~~----~~~~l~~al~~Rf~~~---i~~~~~~~~~~~l~~~~~~~~l~~ 218 (225)
+.+++|+|...-.+. ..-.|++++++|||.. ++|+.++.+.+.....++.+++.+
T Consensus 340 --f~VIAA~NP~~~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~ 401 (506)
T 3f8t_A 340 --CAVLAAINPGEQWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRR 401 (506)
T ss_dssp --CEEEEEECCCC--CCSCGGGGCCSCHHHHTTCSEEEETTC--------------CCHHHHHH
T ss_pred --eEEEEEeCcccccCCCCCccccCCChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHH
Confidence 899999998641100 0127999999999886 566665554333333455555543
No 62
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.56 E-value=9.3e-16 Score=140.97 Aligned_cols=154 Identities=21% Similarity=0.244 Sum_probs=89.6
Q ss_pred eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh----------CCCeEEeccCc
Q psy5910 6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII----------NVPIIVVDATS 75 (225)
Q Consensus 6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~----------~~~~~~~~~~~ 75 (225)
.++|+++.++.+...+.. ...++++|+||||||||++|+.+++.+ +.+++.++++.
T Consensus 171 ~viGr~~~i~~l~~~l~~--------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~ 236 (854)
T 1qvr_A 171 PVIGRDEEIRRVIQILLR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGS 236 (854)
T ss_dssp CCCSCHHHHHHHHHHHHC--------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC--
T ss_pred ccCCcHHHHHHHHHHHhc--------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHH
Confidence 468999998888776511 233589999999999999999999987 77899999877
Q ss_pred ccc-cCccCCcHHHHHHHHHHhcchhhhh-hCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccc
Q psy5910 76 FTE-AGYVGDDVESIIQKLLHECDYDVEL-AEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLA 153 (225)
Q Consensus 76 ~~~-~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~ 153 (225)
+.. ..|.|.. ...+..++... .. ..++|+||||++.+.+..+.. ....+.+.|..+++...
T Consensus 237 l~~g~~~~g~~-~~~l~~~~~~~----~~~~~~~iL~IDEi~~l~~~~~~~-----g~~~~~~~L~~~l~~~~------- 299 (854)
T 1qvr_A 237 LLAGAKYRGEF-EERLKAVIQEV----VQSQGEVILFIDELHTVVGAGKAE-----GAVDAGNMLKPALARGE------- 299 (854)
T ss_dssp ---------CH-HHHHHHHHHHH----HTTCSSEEEEECCC------------------------HHHHHTTC-------
T ss_pred hhccCccchHH-HHHHHHHHHHH----HhcCCCeEEEEecHHHHhccCCcc-----chHHHHHHHHHHHhCCC-------
Confidence 742 2355543 44555665543 22 257899999999998654221 11235667777776422
Q ss_pred cccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 154 EKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 154 ~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
+.+|+++|..-... -.+++++.+||+. +.++.|+.+.
T Consensus 300 ----------i~~I~at~~~~~~~---~~~d~aL~rRf~~-i~l~~p~~~e 336 (854)
T 1qvr_A 300 ----------LRLIGATTLDEYRE---IEKDPALERRFQP-VYVDEPTVEE 336 (854)
T ss_dssp ----------CCEEEEECHHHHHH---HTTCTTTCSCCCC-EEECCCCHHH
T ss_pred ----------eEEEEecCchHHhh---hccCHHHHhCCce-EEeCCCCHHH
Confidence 66677776511000 1358899999985 7888887655
No 63
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.55 E-value=2.6e-15 Score=136.44 Aligned_cols=157 Identities=24% Similarity=0.288 Sum_probs=101.4
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh----------CCCeEEeccC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII----------NVPIIVVDAT 74 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~----------~~~~~~~~~~ 74 (225)
+.++|+++.++.+.+.+.. ....++||+||||||||++|+++++.+ +..++.++..
T Consensus 186 d~~iGr~~~i~~l~~~l~~--------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~ 251 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCR--------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIG 251 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTS--------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC
T ss_pred CCccCCHHHHHHHHHHHhc--------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHH
Confidence 3478999999888776621 234589999999999999999999987 5567777776
Q ss_pred cccc-cCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccc
Q psy5910 75 SFTE-AGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLA 153 (225)
Q Consensus 75 ~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~ 153 (225)
.+.. ..|.|. ....+..++... ....++|+||||++.+.+.... ......+.+.|..+++..
T Consensus 252 ~l~~~~~~~g~-~e~~l~~~~~~~----~~~~~~iL~IDEi~~l~~~~~~----~~~~~~~~~~L~~~l~~~-------- 314 (758)
T 1r6b_X 252 SLLAGTKYRGD-FEKRFKALLKQL----EQDTNSILFIDEIHTIIGAGAA----SGGQVDAANLIKPLLSSG-------- 314 (758)
T ss_dssp ---CCCCCSSC-HHHHHHHHHHHH----SSSSCEEEEETTTTTTTTSCCS----SSCHHHHHHHHSSCSSSC--------
T ss_pred HHhccccccch-HHHHHHHHHHHH----HhcCCeEEEEechHHHhhcCCC----CcchHHHHHHHHHHHhCC--------
Confidence 6542 235554 355566666554 3346799999999999865321 112233445554454421
Q ss_pred cccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 154 EKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 154 ~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
. +.+|.++|..-.. ..-.+|+++.+||+ .+.++.|+.+.
T Consensus 315 -------~--~~~I~at~~~~~~--~~~~~d~aL~~Rf~-~i~v~~p~~~e 353 (758)
T 1r6b_X 315 -------K--IRVIGSTTYQEFS--NIFEKDRALARRFQ-KIDITEPSIEE 353 (758)
T ss_dssp -------C--CEEEEEECHHHHH--CCCCCTTSSGGGEE-EEECCCCCHHH
T ss_pred -------C--eEEEEEeCchHHh--hhhhcCHHHHhCce-EEEcCCCCHHH
Confidence 1 6677777651100 01146788999997 57888887655
No 64
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.55 E-value=5.2e-15 Score=123.72 Aligned_cols=162 Identities=21% Similarity=0.200 Sum_probs=101.1
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh---------CCCeEEeccCc
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII---------NVPIIVVDATS 75 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~---------~~~~~~~~~~~ 75 (225)
+.++|+++.++.+...+...... ....+++|+||||||||++++.+++.+ +.+++.+++..
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~----------~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRG----------EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH 88 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSS----------CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC----------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc
Confidence 56899999999988866322111 234589999999999999999999988 77888898865
Q ss_pred cccc---------------CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHH
Q psy5910 76 FTEA---------------GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLK 140 (225)
Q Consensus 76 ~~~~---------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~ 140 (225)
.... ...|.........++.... ....+.+|+|||++.+.... . .+..|..
T Consensus 89 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~vlilDEi~~l~~~~--------~---~~~~l~~ 154 (387)
T 2v1u_A 89 RETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLS---RLRGIYIIVLDEIDFLPKRP--------G---GQDLLYR 154 (387)
T ss_dssp SCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHT---TSCSEEEEEEETTTHHHHST--------T---HHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHh---ccCCeEEEEEccHhhhcccC--------C---CChHHHh
Confidence 4221 0122222333333332210 11246699999999997552 0 2344544
Q ss_pred HHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhccc-ccccccccccc
Q psy5910 141 LIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQ-ETNFLEKLNNN 204 (225)
Q Consensus 141 ~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~-~i~~~~~~~~~ 204 (225)
+++..... + ...++.+|.++|..- ..+.+++.+.+||.. .+.|+.++.++
T Consensus 155 l~~~~~~~---------~-~~~~~~~I~~t~~~~----~~~~l~~~l~~r~~~~~i~l~~l~~~~ 205 (387)
T 2v1u_A 155 ITRINQEL---------G-DRVWVSLVGITNSLG----FVENLEPRVKSSLGEVELVFPPYTAPQ 205 (387)
T ss_dssp HHHGGGCC---------------CEEEEECSCST----TSSSSCHHHHTTTTSEECCBCCCCHHH
T ss_pred Hhhchhhc---------C-CCceEEEEEEECCCc----hHhhhCHHHHhcCCCeEEeeCCCCHHH
Confidence 44421100 0 011277778877621 125788999999986 58998888765
No 65
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.55 E-value=1e-14 Score=113.81 Aligned_cols=151 Identities=19% Similarity=0.203 Sum_probs=91.9
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEe--ccC--------
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVV--DAT-------- 74 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~--~~~-------- 74 (225)
+.++|++++++.+...+... .....++|+||||||||++++.+++.++...... .+.
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLG-------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREI 89 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHT-------------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcC-------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 45789999999988776210 1123688999999999999999998874422110 000
Q ss_pred ------cccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcC
Q psy5910 75 ------SFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLS 148 (225)
Q Consensus 75 ------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~ 148 (225)
.+.............+..++...........+.+|+|||++.+... .++.|+..++...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~-------------~~~~l~~~l~~~~-- 154 (250)
T 1njg_A 90 EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH-------------SFNALLKTLEEPP-- 154 (250)
T ss_dssp HTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHH-------------HHHHHHHHHHSCC--
T ss_pred hccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHH-------------HHHHHHHHHhcCC--
Confidence 0000000001112233444443321112235789999999998755 6788999987521
Q ss_pred ccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 149 ITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
.. +.+|.++|. ...+++++.+|+ ..+.++.++.++
T Consensus 155 -----------~~--~~~i~~t~~-------~~~~~~~l~~r~-~~i~l~~l~~~e 189 (250)
T 1njg_A 155 -----------EH--VKFLLATTD-------PQKLPVTILSRC-LQFHLKALDVEQ 189 (250)
T ss_dssp -----------TT--EEEEEEESC-------GGGSCHHHHTTS-EEEECCCCCHHH
T ss_pred -----------Cc--eEEEEEeCC-------hHhCCHHHHHHh-hhccCCCCCHHH
Confidence 12 666666665 457788898885 457777776654
No 66
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.55 E-value=2.7e-15 Score=122.40 Aligned_cols=156 Identities=10% Similarity=0.064 Sum_probs=98.2
Q ss_pred eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh----------CCCeEEeccCc
Q psy5910 6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII----------NVPIIVVDATS 75 (225)
Q Consensus 6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~----------~~~~~~~~~~~ 75 (225)
.+.|.++..+.+...+...... ..+++++|+||||||||++++.+++.+ +..++.++|..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~----------~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~ 90 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMS----------SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALE 90 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT----------TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTC
T ss_pred ccCCHHHHHHHHHHHHHHHhcC----------CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccc
Confidence 4667778887777666333321 234689999999999999999999988 34578889866
Q ss_pred cccc---------CccCC-----cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHH
Q psy5910 76 FTEA---------GYVGD-----DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKL 141 (225)
Q Consensus 76 ~~~~---------~~~g~-----~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~ 141 (225)
+.+. .+.|. .....+...|.... -....+.|++|||+|.+. . |+.|+.+
T Consensus 91 ~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~--~~~~~~~ii~lDE~d~l~-~--------------q~~L~~l 153 (318)
T 3te6_A 91 LAGMDALYEKIWFAISKENLCGDISLEALNFYITNVP--KAKKRKTLILIQNPENLL-S--------------EKILQYF 153 (318)
T ss_dssp CC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSC--GGGSCEEEEEEECCSSSC-C--------------THHHHHH
T ss_pred cCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhh--hccCCceEEEEecHHHhh-c--------------chHHHHH
Confidence 5331 01111 12334555555421 012456899999999998 2 2444554
Q ss_pred HhcCCcCccccccccCCCCCCceeEEecCcceeeccCccc-cHHHHHHhhccc-ccccccccccc
Q psy5910 142 IEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFS-GIENFIINRINQ-ETNFLEKLNNN 204 (225)
Q Consensus 142 l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~-~l~~al~~Rf~~-~i~~~~~~~~~ 204 (225)
++-.. .+..+ +.+|+++|.+ ..++ .+++++++||.. .|.|++++.++
T Consensus 154 ~~~~~----------~~~s~--~~vI~i~n~~----d~~~~~L~~~v~SR~~~~~i~F~pYt~~e 202 (318)
T 3te6_A 154 EKWIS----------SKNSK--LSIICVGGHN----VTIREQINIMPSLKAHFTEIKLNKVDKNE 202 (318)
T ss_dssp HHHHH----------CSSCC--EEEEEECCSS----CCCHHHHHTCHHHHTTEEEEECCCCCHHH
T ss_pred Hhccc----------ccCCc--EEEEEEecCc----ccchhhcchhhhccCCceEEEeCCCCHHH
Confidence 43100 01122 7888888772 1122 367788899974 59999999887
No 67
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.54 E-value=5.8e-15 Score=120.88 Aligned_cols=144 Identities=24% Similarity=0.266 Sum_probs=94.5
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCC-----CeEEeccCccccc
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINV-----PIIVVDATSFTEA 79 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~-----~~~~~~~~~~~~~ 79 (225)
+.++|++++++.+...+.. ...+++||+||||||||++|+++++.+.. .++.+++.+...
T Consensus 25 ~~~~g~~~~~~~l~~~l~~--------------~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~- 89 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKT--------------GSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERG- 89 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHH--------------TCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHH-
T ss_pred HHhhCCHHHHHHHHHHHHc--------------CCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCc-
Confidence 3479999999999876621 11236999999999999999999998632 366666544311
Q ss_pred CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCC
Q psy5910 80 GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPS 159 (225)
Q Consensus 80 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~ 159 (225)
. ......+...... .......+.+++|||++.+... .++.|+..++...
T Consensus 90 -~--~~~~~~~~~~~~~--~~~~~~~~~vliiDe~~~l~~~-------------~~~~L~~~le~~~------------- 138 (327)
T 1iqp_A 90 -I--NVIREKVKEFART--KPIGGASFKIIFLDEADALTQD-------------AQQALRRTMEMFS------------- 138 (327)
T ss_dssp -H--HTTHHHHHHHHHS--CCGGGCSCEEEEEETGGGSCHH-------------HHHHHHHHHHHTT-------------
T ss_pred -h--HHHHHHHHHHHhh--CCcCCCCCeEEEEeCCCcCCHH-------------HHHHHHHHHHhcC-------------
Confidence 0 0111112222111 1112246789999999999866 6889999998532
Q ss_pred CCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 160 QNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 160 ~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
.+ +.+|.++|. ...+.+++.+|+. .+.|+.++.+.
T Consensus 139 ~~--~~~i~~~~~-------~~~l~~~l~sr~~-~~~~~~l~~~~ 173 (327)
T 1iqp_A 139 SN--VRFILSCNY-------SSKIIEPIQSRCA-IFRFRPLRDED 173 (327)
T ss_dssp TT--EEEEEEESC-------GGGSCHHHHHTEE-EEECCCCCHHH
T ss_pred CC--CeEEEEeCC-------ccccCHHHHhhCc-EEEecCCCHHH
Confidence 12 556666665 4578899999986 56777766554
No 68
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.54 E-value=2.1e-14 Score=118.53 Aligned_cols=153 Identities=23% Similarity=0.293 Sum_probs=94.9
Q ss_pred eechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCcH
Q psy5910 7 IIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDV 86 (225)
Q Consensus 7 i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~~ 86 (225)
++|++.+++.+...+.....+ ..+..+++|+|||||||||+++++++.++.++...++..+.. +.+
T Consensus 27 ~~g~~~~~~~l~~~i~~~~~~---------~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~----~~~- 92 (334)
T 1in4_A 27 FIGQENVKKKLSLALEAAKMR---------GEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK----QGD- 92 (334)
T ss_dssp CCSCHHHHHHHHHHHHHHHHH---------TCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS----HHH-
T ss_pred ccCcHHHHHHHHHHHHHHHhc---------CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC----HHH-
Confidence 478888888876655211000 012257899999999999999999999999887766654321 111
Q ss_pred HHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCcc-----ccccccCCCCC
Q psy5910 87 ESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSIT-----SLAEKKNPSQN 161 (225)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~-----~~~~~~~~~~~ 161 (225)
+...+.. .....|+|+||++.+.+. +++.|+..++.....+. ...........
T Consensus 93 ---l~~~~~~------~~~~~v~~iDE~~~l~~~-------------~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~ 150 (334)
T 1in4_A 93 ---MAAILTS------LERGDVLFIDEIHRLNKA-------------VEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQP 150 (334)
T ss_dssp ---HHHHHHH------CCTTCEEEEETGGGCCHH-------------HHHHHHHHHHTSCCCC---------------CC
T ss_pred ---HHHHHHH------ccCCCEEEEcchhhcCHH-------------HHHHHHHHHHhcccceeeccCcccccccccCCC
Confidence 2222221 135679999999998864 67777777765432110 00000001111
Q ss_pred CceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 162 PQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 162 ~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
+.++.+++. +..+++.+++||.....++.++.+.
T Consensus 151 --~~li~at~~-------~~~Ls~~l~sR~~l~~~Ld~~~~~~ 184 (334)
T 1in4_A 151 --FTLVGATTR-------SGLLSSPLRSRFGIILELDFYTVKE 184 (334)
T ss_dssp --CEEEEEESC-------GGGSCHHHHTTCSEEEECCCCCHHH
T ss_pred --eEEEEecCC-------cccCCHHHHHhcCceeeCCCCCHHH
Confidence 445555555 5689999999998777777777655
No 69
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.54 E-value=5.4e-15 Score=123.83 Aligned_cols=153 Identities=20% Similarity=0.237 Sum_probs=98.2
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh-----------CCCeEEecc
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII-----------NVPIIVVDA 73 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~-----------~~~~~~~~~ 73 (225)
+.++|+++.++.+...+...... ...++++|+||||||||++|+.+++.+ +.+++.+++
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~----------~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~ 89 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKN----------EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNC 89 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTT----------CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC----------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEEC
Confidence 56899999999888766332221 123478999999999999999999987 888999987
Q ss_pred Cccc-cc----------------CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHH
Q psy5910 74 TSFT-EA----------------GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQ 136 (225)
Q Consensus 74 ~~~~-~~----------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~ 136 (225)
.... .. .+.|......+..++... . ..+.+|+|||++.+.... .++
T Consensus 90 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l----~-~~~~vlilDEi~~l~~~~------------~~~ 152 (384)
T 2qby_B 90 REVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGT----R-NIRAIIYLDEVDTLVKRR------------GGD 152 (384)
T ss_dssp HHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHH----S-SSCEEEEEETTHHHHHST------------TSH
T ss_pred ccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHh----c-cCCCEEEEECHHHhccCC------------CCc
Confidence 6532 10 011222222233332221 1 223399999999998652 123
Q ss_pred H-HHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 137 S-LLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 137 ~-Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
. +..+++.. .+ +.+|.++|..- ..+.+++++.+||...+.+++++.++
T Consensus 153 ~~l~~l~~~~--------------~~--~~iI~~t~~~~----~~~~l~~~l~sr~~~~i~l~~l~~~~ 201 (384)
T 2qby_B 153 IVLYQLLRSD--------------AN--ISVIMISNDIN----VRDYMEPRVLSSLGPSVIFKPYDAEQ 201 (384)
T ss_dssp HHHHHHHTSS--------------SC--EEEEEECSSTT----TTTTSCHHHHHTCCCEEEECCCCHHH
T ss_pred eeHHHHhcCC--------------cc--eEEEEEECCCc----hHhhhCHHHHhcCCCeEEECCCCHHH
Confidence 3 33444321 11 77777777621 12578899999998788998887765
No 70
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.53 E-value=2.8e-15 Score=122.31 Aligned_cols=144 Identities=24% Similarity=0.252 Sum_probs=96.3
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh-----CCCeEEeccCccccc
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII-----NVPIIVVDATSFTEA 79 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~-----~~~~~~~~~~~~~~~ 79 (225)
+.++|++++++.+...+.. ...+++||+||||||||++|+++++.+ +.+++.+++.+...
T Consensus 17 ~~~~g~~~~~~~l~~~l~~--------------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~- 81 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVER--------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG- 81 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTT--------------TCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTC-
T ss_pred HHHhCCHHHHHHHHHHHhC--------------CCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccC-
Confidence 3479999999999887621 112369999999999999999999986 33467777765321
Q ss_pred CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCC
Q psy5910 80 GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPS 159 (225)
Q Consensus 80 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~ 159 (225)
.......+....... ......+.+++|||++.+... .++.|++.++...
T Consensus 82 ---~~~~~~~~~~~~~~~--~~~~~~~~vliiDe~~~l~~~-------------~~~~L~~~le~~~------------- 130 (319)
T 2chq_A 82 ---IDVVRHKIKEFARTA--PIGGAPFKIIFLDEADALTAD-------------AQAALRRTMEMYS------------- 130 (319)
T ss_dssp ---TTTSSHHHHHHHHSC--CSSSCCCEEEEEETGGGSCHH-------------HHHTTGGGTSSSS-------------
T ss_pred ---hHHHHHHHHHHHhcC--CCCCCCceEEEEeCCCcCCHH-------------HHHHHHHHHHhcC-------------
Confidence 111122222222111 111245789999999999865 6788888887521
Q ss_pred CCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 160 QNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 160 ~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
.+ +.+|.++|. ...+.+++.+|+. .+.|+.|+.++
T Consensus 131 ~~--~~~i~~~~~-------~~~l~~~l~sr~~-~i~~~~~~~~~ 165 (319)
T 2chq_A 131 KS--CRFILSCNY-------VSRIIEPIQSRCA-VFRFKPVPKEA 165 (319)
T ss_dssp SS--EEEEEEESC-------GGGSCHHHHTTCE-EEECCCCCHHH
T ss_pred CC--CeEEEEeCC-------hhhcchHHHhhCe-EEEecCCCHHH
Confidence 12 666666666 5578899999985 57777777654
No 71
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.52 E-value=2.7e-14 Score=116.33 Aligned_cols=137 Identities=12% Similarity=0.169 Sum_probs=88.9
Q ss_pred chhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh------CCCeEEeccCcccccCcc
Q psy5910 9 GQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII------NVPIIVVDATSFTEAGYV 82 (225)
Q Consensus 9 G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~------~~~~~~~~~~~~~~~~~~ 82 (225)
||+++++.|...+... . .+.+||+||||+|||++|+++++.+ ...+..+++..- ..
T Consensus 1 g~~~~~~~L~~~i~~~-------------~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~----~~ 62 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS-------------E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE----NI 62 (305)
T ss_dssp ---CHHHHHHHHHHTC-------------S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS----CB
T ss_pred ChHHHHHHHHHHHHCC-------------C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC----CC
Confidence 7888888888776211 1 2378899999999999999999864 235666665321 11
Q ss_pred CCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCC
Q psy5910 83 GDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNP 162 (225)
Q Consensus 83 g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~ 162 (225)
+ ...++.+.+.+..........|++|||+|.+... .+++|++.||+. ..+
T Consensus 63 ~---id~ir~li~~~~~~p~~~~~kvviIdead~lt~~-------------a~naLLk~LEep-------------~~~- 112 (305)
T 2gno_A 63 G---IDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQ-------------AANAFLKALEEP-------------PEY- 112 (305)
T ss_dssp C---HHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHH-------------HHHHTHHHHHSC-------------CTT-
T ss_pred C---HHHHHHHHHHHhhccccCCceEEEeccHHHhCHH-------------HHHHHHHHHhCC-------------CCC-
Confidence 1 1223444444321111234679999999999866 789999999962 222
Q ss_pred ceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 163 QVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 163 ~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
.++|.+++. +..+.+++++| .+.|+.++.++
T Consensus 113 -t~fIl~t~~-------~~kl~~tI~SR---~~~f~~l~~~~ 143 (305)
T 2gno_A 113 -AVIVLNTRR-------WHYLLPTIKSR---VFRVVVNVPKE 143 (305)
T ss_dssp -EEEEEEESC-------GGGSCHHHHTT---SEEEECCCCHH
T ss_pred -eEEEEEECC-------hHhChHHHHce---eEeCCCCCHHH
Confidence 444444444 46899999999 78888877765
No 72
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.50 E-value=1.3e-14 Score=118.48 Aligned_cols=142 Identities=17% Similarity=0.220 Sum_probs=94.2
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh-----CCCeEEeccCccccc
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII-----NVPIIVVDATSFTEA 79 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~-----~~~~~~~~~~~~~~~ 79 (225)
+.++|++++++.+...+.. ...++++|+||||||||++|+.+++.+ +.+++.+++.+..
T Consensus 21 ~~~~g~~~~~~~l~~~l~~--------------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~-- 84 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKD--------------GNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDR-- 84 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHS--------------CCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCC--
T ss_pred HHHHCCHHHHHHHHHHHHc--------------CCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcccc--
Confidence 4578999999998887621 112358999999999999999999986 3346667665421
Q ss_pred CccCCcHHHHHHHHHHhcc---hhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCcccccccc
Q psy5910 80 GYVGDDVESIIQKLLHECD---YDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKK 156 (225)
Q Consensus 80 ~~~g~~~~~~~~~~~~~~~---~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~ 156 (225)
+ ...++..+.... .......+.+++|||++.+... .++.|++.++...
T Consensus 85 ---~---~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~-------------~~~~L~~~le~~~---------- 135 (323)
T 1sxj_B 85 ---G---IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAG-------------AQQALRRTMELYS---------- 135 (323)
T ss_dssp ---S---HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHH-------------HHHTTHHHHHHTT----------
T ss_pred ---C---hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHH-------------HHHHHHHHHhccC----------
Confidence 1 112222222210 0000224789999999999865 6788999998521
Q ss_pred CCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 157 NPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 157 ~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
.+ ..+|.++|. ...+.+++.+|+. .+.|+.++.++
T Consensus 136 ---~~--~~~il~~~~-------~~~l~~~l~sr~~-~i~~~~~~~~~ 170 (323)
T 1sxj_B 136 ---NS--TRFAFACNQ-------SNKIIEPLQSQCA-ILRYSKLSDED 170 (323)
T ss_dssp ---TT--EEEEEEESC-------GGGSCHHHHTTSE-EEECCCCCHHH
T ss_pred ---CC--ceEEEEeCC-------hhhchhHHHhhce-EEeecCCCHHH
Confidence 12 555555655 5578899999975 57777777654
No 73
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.50 E-value=3.6e-14 Score=123.70 Aligned_cols=122 Identities=16% Similarity=0.158 Sum_probs=77.3
Q ss_pred ceeechhhHHhhheeeeEecccce-Eeecccce--eeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCc
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRL-FLLKSKNI--YLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGY 81 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~-~~~~~~~~--~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~ 81 (225)
+.++|++++++.|..++....... ......+. ..+.+++||+||||||||++|+++|+.++.+++.+++.+....
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~-- 116 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSK-- 116 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCH--
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchH--
Confidence 357999999999988774322110 00000000 0123589999999999999999999999999999999776431
Q ss_pred cCCcHHHHHHHHHHhc------chh--------hhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhc
Q psy5910 82 VGDDVESIIQKLLHEC------DYD--------VELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEG 144 (225)
Q Consensus 82 ~g~~~~~~~~~~~~~~------~~~--------~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~ 144 (225)
..+...+... ... .....+.||||||+|.+..... ...+.|+.+++.
T Consensus 117 ------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~----------~~l~~L~~~l~~ 177 (516)
T 1sxj_A 117 ------TLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR----------GGVGQLAQFCRK 177 (516)
T ss_dssp ------HHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST----------THHHHHHHHHHH
T ss_pred ------HHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH----------HHHHHHHHHHHh
Confidence 1111111100 000 0124678999999999986521 145778888875
No 74
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.49 E-value=1.5e-14 Score=128.20 Aligned_cols=46 Identities=24% Similarity=0.590 Sum_probs=38.8
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINV 66 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~ 66 (225)
+.++|++++++.+...+ ....+++|+||||||||++|+++++.++.
T Consensus 41 ~~i~G~~~~l~~l~~~i----------------~~g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAA----------------NQKRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp HHCCSCHHHHHHHHHHH----------------HTTCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred ceEECchhhHhhccccc----------------cCCCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 35789999998888777 34458999999999999999999998853
No 75
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.48 E-value=6e-14 Score=116.05 Aligned_cols=142 Identities=21% Similarity=0.302 Sum_probs=90.0
Q ss_pred CcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCC-----eEEeccCccc
Q psy5910 3 LDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVP-----IIVVDATSFT 77 (225)
Q Consensus 3 l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~-----~~~~~~~~~~ 77 (225)
+++ ++||+++++.|...+.. ...++++|+||||||||++|+++++.+..+ +..+++.+.
T Consensus 24 ~~~-~~g~~~~~~~L~~~i~~--------------g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~- 87 (340)
T 1sxj_C 24 LDE-VYGQNEVITTVRKFVDE--------------GKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDD- 87 (340)
T ss_dssp GGG-CCSCHHHHHHHHHHHHT--------------TCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSC-
T ss_pred HHH-hcCcHHHHHHHHHHHhc--------------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCccc-
Confidence 444 58999999988876621 011358999999999999999999987432 455554332
Q ss_pred ccCccCCcHHHHHHHHHHhcc--hhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccc
Q psy5910 78 EAGYVGDDVESIIQKLLHECD--YDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEK 155 (225)
Q Consensus 78 ~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~ 155 (225)
.| .. .++....... ...-.....|++|||+|.+... .++.|+..|+...
T Consensus 88 ----~~--~~-~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~-------------~~~~L~~~le~~~--------- 138 (340)
T 1sxj_C 88 ----RG--ID-VVRNQIKDFASTRQIFSKGFKLIILDEADAMTNA-------------AQNALRRVIERYT--------- 138 (340)
T ss_dssp ----CS--HH-HHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHH-------------HHHHHHHHHHHTT---------
T ss_pred ----cc--HH-HHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHH-------------HHHHHHHHHhcCC---------
Confidence 11 11 1222221110 0000124689999999999765 7899999998632
Q ss_pred cCCCCCCceeEEecCcceeeccCccccHHHHHHhhccccccccccccc
Q psy5910 156 KNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNN 203 (225)
Q Consensus 156 ~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~ 203 (225)
.. ..++.++|. ...+.+++++|+. .+.|..++.+
T Consensus 139 ----~~--~~~il~~n~-------~~~i~~~i~sR~~-~~~~~~l~~~ 172 (340)
T 1sxj_C 139 ----KN--TRFCVLANY-------AHKLTPALLSQCT-RFRFQPLPQE 172 (340)
T ss_dssp ----TT--EEEEEEESC-------GGGSCHHHHTTSE-EEECCCCCHH
T ss_pred ----CC--eEEEEEecC-------ccccchhHHhhce-eEeccCCCHH
Confidence 12 445555565 4578899999975 4666655544
No 76
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.46 E-value=5.8e-14 Score=117.07 Aligned_cols=143 Identities=22% Similarity=0.250 Sum_probs=90.5
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCe----------------
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPI---------------- 68 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~---------------- 68 (225)
+.++|++++++.+...+... .....+||+||+|||||++|+++++.++...
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~-------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 82 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLG-------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREI 82 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHT-------------CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhC-------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHH
Confidence 34799999999998876210 1123578999999999999999999885421
Q ss_pred --------EEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHH
Q psy5910 69 --------IVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLK 140 (225)
Q Consensus 69 --------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~ 140 (225)
+.+++.. ..+.+ .++.++...........+.|++|||++.+... .++.|+.
T Consensus 83 ~~~~~~~~~~~~~~~-----~~~~~---~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~-------------~~~~Ll~ 141 (373)
T 1jr3_A 83 EQGRFVDLIEIDAAS-----RTKVE---DTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH-------------SFNALLK 141 (373)
T ss_dssp HTSCCSSCEEEETTC-----SCCSS---CHHHHHHHTTSCCSSSSSEEEEEECGGGSCHH-------------HHHHHHH
T ss_pred hccCCCceEEecccc-----cCCHH---HHHHHHHHHhhccccCCeEEEEEECcchhcHH-------------HHHHHHH
Confidence 2222111 01111 12233333211111235679999999999765 6889999
Q ss_pred HHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 141 LIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 141 ~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
.++... .+ +.+|.+++. ...+.+++++|+ ..+.|+.++.++
T Consensus 142 ~le~~~-------------~~--~~~Il~~~~-------~~~l~~~l~sr~-~~i~~~~l~~~~ 182 (373)
T 1jr3_A 142 TLEEPP-------------EH--VKFLLATTD-------PQKLPVTILSRC-LQFHLKALDVEQ 182 (373)
T ss_dssp HHHSCC-------------SS--EEEEEEESC-------GGGSCHHHHTTS-EEEECCCCCHHH
T ss_pred HHhcCC-------------Cc--eEEEEEeCC-------hHhCcHHHHhhe-eEeeCCCCCHHH
Confidence 998521 12 555555554 446788899886 457777777654
No 77
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.45 E-value=3.6e-14 Score=116.53 Aligned_cols=128 Identities=15% Similarity=0.268 Sum_probs=78.6
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhh
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKI 117 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l 117 (225)
.+++|+||||||||++|+++++.+ +.+++++++..+.. .+.+......... +.. ....+.+|||||++.+
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~-~~~-----~~~~~~vL~iDEi~~l 110 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQ-AMVEHLKKGTINE-FRN-----MYKSVDLLLLDDVQFL 110 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH-HHHHHHHHTCHHH-HHH-----HHHTCSEEEEECGGGG
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHH-HHHHHHHcCcHHH-HHH-----HhcCCCEEEEcCcccc
Confidence 589999999999999999999998 88999998866532 1111000000001 110 1235889999999998
Q ss_pred cccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhccc--cc
Q psy5910 118 SKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQ--ET 195 (225)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~--~i 195 (225)
.... ..++.++..++.... ... .+++.+++.+.- ...+++++.+||.. .+
T Consensus 111 ~~~~-----------~~~~~l~~~l~~~~~-----------~~~--~iii~~~~~~~~----l~~l~~~L~sR~~~~~~i 162 (324)
T 1l8q_A 111 SGKE-----------RTQIEFFHIFNTLYL-----------LEK--QIILASDRHPQK----LDGVSDRLVSRFEGGILV 162 (324)
T ss_dssp TTCH-----------HHHHHHHHHHHHHHH-----------TTC--EEEEEESSCGGG----CTTSCHHHHHHHHTSEEE
T ss_pred cCCh-----------HHHHHHHHHHHHHHH-----------CCC--eEEEEecCChHH----HHHhhhHhhhcccCceEE
Confidence 8631 156777777653210 011 444555544110 12589999999973 46
Q ss_pred ccccccccc
Q psy5910 196 NFLEKLNNN 204 (225)
Q Consensus 196 ~~~~~~~~~ 204 (225)
.+++ +.++
T Consensus 163 ~l~~-~~~e 170 (324)
T 1l8q_A 163 EIEL-DNKT 170 (324)
T ss_dssp ECCC-CHHH
T ss_pred EeCC-CHHH
Confidence 6766 5443
No 78
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.45 E-value=3.6e-13 Score=111.19 Aligned_cols=122 Identities=9% Similarity=0.133 Sum_probs=80.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCC------------------------eEEeccCcccccCccCCcHHHHHHHHHHhc
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVP------------------------IIVVDATSFTEAGYVGDDVESIIQKLLHEC 97 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~------------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 97 (225)
.+||+||+|+|||++|+++++.+.+. +..+++..- . .... ...++.+.+..
T Consensus 26 a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~--~--~~~~-i~~ir~l~~~~ 100 (334)
T 1a5t_A 26 ALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG--K--NTLG-VDAVREVTEKL 100 (334)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT--C--SSBC-HHHHHHHHHHT
T ss_pred eEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc--C--CCCC-HHHHHHHHHHH
Confidence 48899999999999999999988543 222222100 0 0011 22344555444
Q ss_pred chhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeecc
Q psy5910 98 DYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAG 177 (225)
Q Consensus 98 ~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~ 177 (225)
..........|++|||+|.+... .+++|++.||+. ..+ .++|.++|.
T Consensus 101 ~~~~~~~~~kvviIdead~l~~~-------------a~naLLk~lEep-------------~~~--~~~Il~t~~----- 147 (334)
T 1a5t_A 101 NEHARLGGAKVVWVTDAALLTDA-------------AANALLKTLEEP-------------PAE--TWFFLATRE----- 147 (334)
T ss_dssp TSCCTTSSCEEEEESCGGGBCHH-------------HHHHHHHHHTSC-------------CTT--EEEEEEESC-----
T ss_pred hhccccCCcEEEEECchhhcCHH-------------HHHHHHHHhcCC-------------CCC--eEEEEEeCC-----
Confidence 22212345789999999999866 789999999862 222 555555555
Q ss_pred CccccHHHHHHhhcccccccccccccc
Q psy5910 178 GAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 178 ~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
++.+.+++++|+. .+.|+.|+.++
T Consensus 148 --~~~l~~ti~SRc~-~~~~~~~~~~~ 171 (334)
T 1a5t_A 148 --PERLLATLRSRCR-LHYLAPPPEQY 171 (334)
T ss_dssp --GGGSCHHHHTTSE-EEECCCCCHHH
T ss_pred --hHhCcHHHhhcce-eeeCCCCCHHH
Confidence 5689999999974 58888887765
No 79
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.44 E-value=8e-14 Score=116.70 Aligned_cols=159 Identities=9% Similarity=0.135 Sum_probs=98.4
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCC--cEEEEcCCCCcHHHHHHHHHHHh----CCCeEEeccCcccc
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKS--NILLVGPTGCGKTLMVKTLAKII----NVPIIVVDATSFTE 78 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~--~vLl~Gp~GtGKT~la~~ia~~~----~~~~~~~~~~~~~~ 78 (225)
+.++|+++.++.+...+...... .... .++|+||||||||++++.+++.+ +.+++.+++.....
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~----------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~ 86 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRN----------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRN 86 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHS----------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCS
T ss_pred CCCCChHHHHHHHHHHHHHHHcC----------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCC
Confidence 56899999999988877332111 1112 68899999999999999999998 46688888754321
Q ss_pred c---------------CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHh
Q psy5910 79 A---------------GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIE 143 (225)
Q Consensus 79 ~---------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~ 143 (225)
. ...+.........+.... .....+.+|+|||++.+... .+..|+.+++
T Consensus 87 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l---~~~~~~~vlilDE~~~l~~~-------------~~~~L~~~~~ 150 (389)
T 1fnn_A 87 FTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHL---RERDLYMFLVLDDAFNLAPD-------------ILSTFIRLGQ 150 (389)
T ss_dssp HHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHH---HHTTCCEEEEEETGGGSCHH-------------HHHHHHHHTT
T ss_pred HHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHH---hhcCCeEEEEEECccccchH-------------HHHHHHHHHH
Confidence 0 001112222222221111 01234679999999999433 7788888886
Q ss_pred cCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhccc-ccccccccccc
Q psy5910 144 GVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQ-ETNFLEKLNNN 204 (225)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~-~i~~~~~~~~~ 204 (225)
..... ...+ +.+|.++|.+- ..+.+++.+.+||.. .+.|++++.++
T Consensus 151 ~~~~~---------~~~~--~~iI~~~~~~~----~~~~l~~~~~~r~~~~~i~~~pl~~~~ 197 (389)
T 1fnn_A 151 EADKL---------GAFR--IALVIVGHNDA----VLNNLDPSTRGIMGKYVIRFSPYTKDQ 197 (389)
T ss_dssp CHHHH---------SSCC--EEEEEEESSTH----HHHTSCHHHHHHHTTCEEECCCCBHHH
T ss_pred hCCCC---------CcCC--EEEEEEECCch----HHHHhCHHhhhcCCCceEEeCCCCHHH
Confidence 42100 0012 66666666521 014567888899886 48888887765
No 80
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.43 E-value=1.4e-13 Score=114.23 Aligned_cols=144 Identities=20% Similarity=0.247 Sum_probs=88.1
Q ss_pred ceeechhhHHhhheeee-EecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCC----------------
Q psy5910 5 RHIIGQHETKKIVSVGV-YNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVP---------------- 67 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l-~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~---------------- 67 (225)
+.++|++++++.+...+ .. ...++++|+||+||||||+++++++.+..+
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~--------------~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~ 79 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQP--------------RDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTAS 79 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCT--------------TCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------
T ss_pred HHhcCCHHHHHHHHHHHhhC--------------CCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccc
Confidence 34689999999887765 11 112358899999999999999999964211
Q ss_pred -------------eEEeccCcccccCccCCcHHHHHHHHHHhcch--hhh--------hhCCCEEEEcchhhhccccccc
Q psy5910 68 -------------IIVVDATSFTEAGYVGDDVESIIQKLLHECDY--DVE--------LAEQSIIYIDEIDKISKKTDVV 124 (225)
Q Consensus 68 -------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~--------~~~~~vl~iDEid~l~~~~~~~ 124 (225)
++.+++... .... ...++..+..... .+. ...+.|++|||++.+.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~---- 149 (354)
T 1sxj_E 80 NRKLELNVVSSPYHLEITPSDM-----GNND-RIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKD---- 149 (354)
T ss_dssp ------CCEECSSEEEECCC---------CC-HHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHH----
T ss_pred cccceeeeecccceEEecHhhc-----CCcc-hHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHH----
Confidence 111211110 0011 1112232222110 000 235679999999997655
Q ss_pred CCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910 125 SGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 125 ~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
.++.|++.|+... .+ ..+|.+||. +..+.+++++|+ ..+.|+.|+.++
T Consensus 150 ---------~~~~L~~~le~~~-------------~~--~~~Il~t~~-------~~~l~~~l~sR~-~~~~~~~~~~~~ 197 (354)
T 1sxj_E 150 ---------AQAALRRTMEKYS-------------KN--IRLIMVCDS-------MSPIIAPIKSQC-LLIRCPAPSDSE 197 (354)
T ss_dssp ---------HHHHHHHHHHHST-------------TT--EEEEEEESC-------SCSSCHHHHTTS-EEEECCCCCHHH
T ss_pred ---------HHHHHHHHHHhhc-------------CC--CEEEEEeCC-------HHHHHHHHHhhc-eEEecCCcCHHH
Confidence 7899999998632 12 455555555 457888999998 558888888765
No 81
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.43 E-value=2.3e-13 Score=113.61 Aligned_cols=159 Identities=18% Similarity=0.275 Sum_probs=100.8
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh------CCCeEEeccCcccc
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII------NVPIIVVDATSFTE 78 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~------~~~~~~~~~~~~~~ 78 (225)
+.++|+++.++.+...+...... .....++|+||+|||||++++.+++.+ +.+++.+++.....
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~----------~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~ 89 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYRE----------EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDT 89 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGT----------CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCS
T ss_pred CCCCChHHHHHHHHHHHHHHHcC----------CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCC
Confidence 56899999999998877322111 233578899999999999999999988 77888888753211
Q ss_pred c---------------CccCCcHHHHHHHHHHhcchhhhh-hCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHH
Q psy5910 79 A---------------GYVGDDVESIIQKLLHECDYDVEL-AEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLI 142 (225)
Q Consensus 79 ~---------------~~~g~~~~~~~~~~~~~~~~~~~~-~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l 142 (225)
. ...+.........++... .. ..+.+|+|||++.+....+ ......|+..+
T Consensus 90 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l----~~~~~~~vlilDE~~~l~~~~~---------~~~l~~l~~~~ 156 (386)
T 2qby_A 90 PYRVLADLLESLDVKVPFTGLSIAELYRRLVKAV----RDYGSQVVIVLDEIDAFVKKYN---------DDILYKLSRIN 156 (386)
T ss_dssp HHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHH----HTCCSCEEEEEETHHHHHHSSC---------STHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHH----hccCCeEEEEEcChhhhhccCc---------CHHHHHHhhch
Confidence 0 012222233333332221 22 2378999999999985421 11567777777
Q ss_pred hcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhccc-ccccccccccc
Q psy5910 143 EGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQ-ETNFLEKLNNN 204 (225)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~-~i~~~~~~~~~ 204 (225)
+... ..+ +.+|.++|..- -...+++.+.+||.. .+.+++++.++
T Consensus 157 ~~~~------------~~~--~~~I~~~~~~~----~~~~~~~~~~~r~~~~~i~l~~l~~~~ 201 (386)
T 2qby_A 157 SEVN------------KSK--ISFIGITNDVK----FVDLLDPRVKSSLSEEEIIFPPYNAEE 201 (386)
T ss_dssp HSCC------------C----EEEEEEESCGG----GGGGCTTHHHHTTTTEEEEECCCCHHH
T ss_pred hhcC------------CCe--EEEEEEECCCC----hHhhhCHHHhccCCCeeEEeCCCCHHH
Confidence 6420 112 66666666521 014577888899865 58888887765
No 82
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.42 E-value=4.3e-13 Score=114.60 Aligned_cols=127 Identities=15% Similarity=0.286 Sum_probs=80.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHh-----CCCeEEeccCcccccCccCCcHHHHHHHHHHhcchh--hhhh-CCCEEEEc
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKII-----NVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYD--VELA-EQSIIYID 112 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~-~~~vl~iD 112 (225)
.+++|+||||||||+||+++++.+ +.+++++++..+.. .....+....... .... .+.+||||
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~vL~ID 201 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLN---------DLVDSMKEGKLNEFREKYRKKVDILLID 201 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHH---------HHHHHHHTTCHHHHHHHHTTTCSEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHH---------HHHHHHHcccHHHHHHHhcCCCCEEEEe
Confidence 589999999999999999999988 78888888766421 1111110000000 0113 67899999
Q ss_pred chhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcc
Q psy5910 113 EIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRIN 192 (225)
Q Consensus 113 Eid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~ 192 (225)
|++.+.... ..++.|+..++.... ... .+++.+.+.+.- ...+++.+++||.
T Consensus 202 Ei~~l~~~~-----------~~q~~l~~~l~~l~~-----------~~~--~iIitt~~~~~~----l~~l~~~L~sR~~ 253 (440)
T 2z4s_A 202 DVQFLIGKT-----------GVQTELFHTFNELHD-----------SGK--QIVICSDREPQK----LSEFQDRLVSRFQ 253 (440)
T ss_dssp CGGGGSSCH-----------HHHHHHHHHHHHHHT-----------TTC--EEEEEESSCGGG----CSSCCHHHHHHHH
T ss_pred CcccccCCh-----------HHHHHHHHHHHHHHH-----------CCC--eEEEEECCCHHH----HHHHHHHHHhhcc
Confidence 999998631 257778887764210 011 445554444210 1237899999996
Q ss_pred --cccccccccccc
Q psy5910 193 --QETNFLEKLNNN 204 (225)
Q Consensus 193 --~~i~~~~~~~~~ 204 (225)
..+.++.|+.+.
T Consensus 254 ~g~~i~l~~p~~e~ 267 (440)
T 2z4s_A 254 MGLVAKLEPPDEET 267 (440)
T ss_dssp SSBCCBCCCCCHHH
T ss_pred CCeEEEeCCCCHHH
Confidence 568888887765
No 83
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.40 E-value=6.1e-13 Score=103.96 Aligned_cols=122 Identities=14% Similarity=0.170 Sum_probs=77.4
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhh
Q psy5910 40 KSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDK 116 (225)
Q Consensus 40 ~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~ 116 (225)
..+++|+||||||||++|+++++.+ +.++..+++..+... +. ..+. ....+.+++|||++.
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~-~~---------~~~~------~~~~~~vliiDe~~~ 115 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASI-ST---------ALLE------GLEQFDLICIDDVDA 115 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGS-CG---------GGGT------TGGGSSEEEEETGGG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH-HH---------HHHH------hccCCCEEEEecccc
Confidence 4689999999999999999999887 367888887765431 10 0001 124578999999999
Q ss_pred hcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcc--cc
Q psy5910 117 ISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRIN--QE 194 (225)
Q Consensus 117 l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~--~~ 194 (225)
+.... ..++.|+.+++.... ... ..+|.+++... .....+++++.+||. ..
T Consensus 116 ~~~~~-----------~~~~~l~~~l~~~~~-----------~~~--~~ii~~~~~~~---~~~~~~~~~l~~r~~~~~~ 168 (242)
T 3bos_A 116 VAGHP-----------LWEEAIFDLYNRVAE-----------QKR--GSLIVSASASP---MEAGFVLPDLVSRMHWGLT 168 (242)
T ss_dssp GTTCH-----------HHHHHHHHHHHHHHH-----------HCS--CEEEEEESSCT---TTTTCCCHHHHHHHHHSEE
T ss_pred ccCCH-----------HHHHHHHHHHHHHHH-----------cCC--CeEEEEcCCCH---HHHHHhhhhhhhHhhcCce
Confidence 87551 136677777764210 001 32333333210 011245588999986 66
Q ss_pred cccccccccc
Q psy5910 195 TNFLEKLNNN 204 (225)
Q Consensus 195 i~~~~~~~~~ 204 (225)
+.++.|+.+.
T Consensus 169 i~l~~~~~~~ 178 (242)
T 3bos_A 169 YQLQPMMDDE 178 (242)
T ss_dssp EECCCCCGGG
T ss_pred EEeCCCCHHH
Confidence 8888888765
No 84
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.40 E-value=4.4e-13 Score=112.78 Aligned_cols=116 Identities=24% Similarity=0.418 Sum_probs=80.3
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhC---CCeEEeccCcccccCccCCcHHHHHHHHHH-----------hcchhhhhhC
Q psy5910 40 KSNILLVGPTGCGKTLMVKTLAKIIN---VPIIVVDATSFTEAGYVGDDVESIIQKLLH-----------ECDYDVELAE 105 (225)
Q Consensus 40 ~~~vLl~Gp~GtGKT~la~~ia~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----------~~~~~~~~~~ 105 (225)
..+|+++|++||||+++|++++...+ .+|+.++|+.+... -.-..+|. ...+.+..+.
T Consensus 160 ~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~--------~~~~elfg~~~g~~tga~~~~~g~~~~a~ 231 (387)
T 1ny5_A 160 ECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRD--------IFEAELFGYEKGAFTGAVSSKEGFFELAD 231 (387)
T ss_dssp CSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHH--------HHHHHHHCBCTTSSTTCCSCBCCHHHHTT
T ss_pred CCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHH--------HHHHHhcCCCCCCCCCcccccCCceeeCC
Confidence 45789999999999999999998874 68999999876431 01111221 1123445568
Q ss_pred CCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHH
Q psy5910 106 QSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIEN 185 (225)
Q Consensus 106 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~ 185 (225)
++++||||++.+... +|..|+++|+..... ..++......+ +.+|++||. ++.+
T Consensus 232 ~gtlfldei~~l~~~-------------~q~~Ll~~l~~~~~~--~~g~~~~~~~~--~rii~at~~---------~l~~ 285 (387)
T 1ny5_A 232 GGTLFLDEIGELSLE-------------AQAKLLRVIESGKFY--RLGGRKEIEVN--VRILAATNR---------NIKE 285 (387)
T ss_dssp TSEEEEESGGGCCHH-------------HHHHHHHHHHHSEEC--CBTCCSBEECC--CEEEEEESS---------CHHH
T ss_pred CcEEEEcChhhCCHH-------------HHHHHHHHHhcCcEE--eCCCCceeecc--EEEEEeCCC---------CHHH
Confidence 899999999999987 899999999864322 12222111223 788999988 6666
Q ss_pred HHHh
Q psy5910 186 FIIN 189 (225)
Q Consensus 186 al~~ 189 (225)
.+..
T Consensus 286 ~~~~ 289 (387)
T 1ny5_A 286 LVKE 289 (387)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 6543
No 85
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.34 E-value=1.1e-12 Score=109.54 Aligned_cols=108 Identities=21% Similarity=0.406 Sum_probs=74.6
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhCCC--eEEeccCcccccCccCCcHHHHHHHHHHh-----------cchhhhhhCC
Q psy5910 40 KSNILLVGPTGCGKTLMVKTLAKIINVP--IIVVDATSFTEAGYVGDDVESIIQKLLHE-----------CDYDVELAEQ 106 (225)
Q Consensus 40 ~~~vLl~Gp~GtGKT~la~~ia~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----------~~~~~~~~~~ 106 (225)
..+++++|++||||+++|++++...+.. |+.++|..+.+.. ....+|.. ..+.+..+.+
T Consensus 152 ~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~--------~~~~lfg~~~g~~tga~~~~~g~~~~a~~ 223 (368)
T 3dzd_A 152 KAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQEL--------AESELFGHEKGAFTGALTRKKGKLELADQ 223 (368)
T ss_dssp CSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTT--------HHHHHHEECSCSSSSCCCCEECHHHHTTT
T ss_pred chhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHH--------HHHHhcCccccccCCcccccCChHhhcCC
Confidence 3579999999999999999999988543 9999998764311 01122211 1233455688
Q ss_pred CEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcc
Q psy5910 107 SIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNI 172 (225)
Q Consensus 107 ~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~ 172 (225)
++|||||++.+.+. +|..|+++|+..... ..++......+ +.+|++||.
T Consensus 224 gtlfldei~~l~~~-------------~Q~~Ll~~l~~~~~~--~~g~~~~~~~~--~rii~at~~ 272 (368)
T 3dzd_A 224 GTLFLDEVGELDQR-------------VQAKLLRVLETGSFT--RLGGNQKIEVD--IRVISATNK 272 (368)
T ss_dssp SEEEEETGGGSCHH-------------HHHHHHHHHHHSEEC--CBTCCCBEECC--CEEEEEESS
T ss_pred CeEEecChhhCCHH-------------HHHHHHHHHHhCCcc--cCCCCcceeee--eEEEEecCC
Confidence 99999999999988 899999999864322 11111111122 778888887
No 86
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.19 E-value=2.1e-11 Score=121.61 Aligned_cols=144 Identities=16% Similarity=0.118 Sum_probs=83.1
Q ss_pred CCcEEEEcCCCCcHHHHHHH-HHHHhCCCeEEeccCcccccCccCCcHHHHHHHHHHhc-c------hhh-h---hhCCC
Q psy5910 40 KSNILLVGPTGCGKTLMVKT-LAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHEC-D------YDV-E---LAEQS 107 (225)
Q Consensus 40 ~~~vLl~Gp~GtGKT~la~~-ia~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~------~~~-~---~~~~~ 107 (225)
..++||+||||||||++|+. +++..+.++..++++.... ...+...+... . +.. . ....+
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts--------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~ 1338 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT--------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNL 1338 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC--------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCE
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC--------HHHHHHHHHHHhhhccccCCccccCCCCCceE
Confidence 46899999999999999954 4544466677777765432 11222222221 0 000 0 22457
Q ss_pred EEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHH
Q psy5910 108 IIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFI 187 (225)
Q Consensus 108 vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al 187 (225)
|+||||++.....+- ..+.....|.++||.............. ..+ +.+|+|+|.+-- +.-..+++++
T Consensus 1339 VlFiDEinmp~~d~y-------g~q~~lelLRq~le~gg~yd~~~~~~~~-~~~--i~lIaA~Npp~~--gGR~~l~~rl 1406 (2695)
T 4akg_A 1339 VLFCDEINLPKLDKY-------GSQNVVLFLRQLMEKQGFWKTPENKWVT-IER--IHIVGACNPPTD--PGRIPMSERF 1406 (2695)
T ss_dssp EEEEETTTCSCCCSS-------SCCHHHHHHHHHHHTSSEECTTTCCEEE-EES--EEEEEEECCTTS--TTCCCCCHHH
T ss_pred EEEeccccccccccc-------CchhHHHHHHHHHhcCCEEEcCCCcEEE-ecC--EEEEEecCCCcc--CCCccCChhh
Confidence 999999987443321 1123567777788754322211111110 122 677777777210 1113799999
Q ss_pred Hhhcccccccccccccc
Q psy5910 188 INRINQETNFLEKLNNN 204 (225)
Q Consensus 188 ~~Rf~~~i~~~~~~~~~ 204 (225)
+||| ..+.++.|+.+.
T Consensus 1407 lRrf-~vi~i~~P~~~~ 1422 (2695)
T 4akg_A 1407 TRHA-AILYLGYPSGKS 1422 (2695)
T ss_dssp HTTE-EEEECCCCTTTH
T ss_pred hhee-eEEEeCCCCHHH
Confidence 9999 557888887765
No 87
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.15 E-value=6.7e-12 Score=94.30 Aligned_cols=110 Identities=18% Similarity=0.207 Sum_probs=62.2
Q ss_pred Ccceee---chhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh----CCCeEEeccCc
Q psy5910 3 LDRHII---GQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII----NVPIIVVDATS 75 (225)
Q Consensus 3 l~~~i~---G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~----~~~~~~~~~~~ 75 (225)
+++.+. ++.++++.+.+.+.... . .+...++|+||||||||++++++++.+ +..++.++..+
T Consensus 9 f~~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~ 77 (180)
T 3ec2_A 9 LDTYHPKNVSQNRALLTIRVFVHNFN----------P-EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKD 77 (180)
T ss_dssp SSSCCCCSHHHHHHHHHHHHHHHSCC----------G-GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHH
T ss_pred cccccCCCHHHHHHHHHHHHHHHhcc----------c-cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 555554 45666666655442111 1 123578899999999999999999887 44555555443
Q ss_pred ccccCccCCcHHHHHHHHHHhcc---hhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhc
Q psy5910 76 FTEAGYVGDDVESIIQKLLHECD---YDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEG 144 (225)
Q Consensus 76 ~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~ 144 (225)
+.. .+...+.... .......+.+++|||++..... ...+..|..+++.
T Consensus 78 ~~~----------~~~~~~~~~~~~~~~~~~~~~~llilDE~~~~~~~-----------~~~~~~l~~ll~~ 128 (180)
T 3ec2_A 78 LIF----------RLKHLMDEGKDTKFLKTVLNSPVLVLDDLGSERLS-----------DWQRELISYIITY 128 (180)
T ss_dssp HHH----------HHHHHHHHTCCSHHHHHHHTCSEEEEETCSSSCCC-----------HHHHHHHHHHHHH
T ss_pred HHH----------HHHHHhcCchHHHHHHHhcCCCEEEEeCCCCCcCC-----------HHHHHHHHHHHHH
Confidence 321 1111111110 0011247889999999854322 1145566666654
No 88
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.07 E-value=4e-10 Score=82.16 Aligned_cols=70 Identities=19% Similarity=0.315 Sum_probs=51.5
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhh
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKI 117 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l 117 (225)
..++|+||+|+|||+|++++++.+ +...+++++..+... . -...+.+++|||++.+
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~------------~---------~~~~~~lLilDE~~~~ 95 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT------------D---------AAFEAEYLAVDQVEKL 95 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC------------G---------GGGGCSEEEEESTTCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH------------H---------HHhCCCEEEEeCcccc
Confidence 467799999999999999999988 666777777665421 0 0135789999999986
Q ss_pred cccccccCCCCCChHHHHHHHHHHHhc
Q psy5910 118 SKKTDVVSGKDVSGEGVQQSLLKLIEG 144 (225)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~Ll~~l~~ 144 (225)
... .+..|+.+++.
T Consensus 96 ~~~-------------~~~~l~~li~~ 109 (149)
T 2kjq_A 96 GNE-------------EQALLFSIFNR 109 (149)
T ss_dssp CSH-------------HHHHHHHHHHH
T ss_pred ChH-------------HHHHHHHHHHH
Confidence 644 35667777653
No 89
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.07 E-value=1.8e-10 Score=114.97 Aligned_cols=131 Identities=18% Similarity=0.191 Sum_probs=87.9
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhccc
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKK 120 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~ 120 (225)
.++++.||+|||||++++.+|+.+|.+++.++|.+-.+ ...+..++..+ ...++.+++||++++.+.
T Consensus 646 ~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld--------~~~lg~~~~g~-----~~~Gaw~~~DE~nr~~~e 712 (2695)
T 4akg_A 646 YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD--------YQVLSRLLVGI-----TQIGAWGCFDEFNRLDEK 712 (2695)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC--------HHHHHHHHHHH-----HHHTCEEEEETTTSSCHH
T ss_pred CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC--------hhHhhHHHHHH-----HhcCCEeeehhhhhcChH
Confidence 36889999999999999999999999999999977543 12223333321 235799999999999876
Q ss_pred ccccCCCCCChHHHHHHH-------HHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhccc
Q psy5910 121 TDVVSGKDVSGEGVQQSL-------LKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQ 193 (225)
Q Consensus 121 ~~~~~~~~~~~~~~~~~L-------l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~ 193 (225)
+...+ ...+......++..+.....+.+ +.++.|.|..+. + ..++|+++++||..
T Consensus 713 -------------vLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~--~~vfiT~NPgy~--g-~~eLP~~Lk~~Fr~ 774 (2695)
T 4akg_A 713 -------------VLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPH--TAVFITLNPGYN--G-RSELPENLKKSFRE 774 (2695)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTT--CEEEEEECCCSS--S-SCCCCHHHHTTEEE
T ss_pred -------------HHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCC--ceEEEEeCCCcc--C-cccccHHHHhheEE
Confidence 45554 34443333333333332223333 788889987432 2 34899999999943
Q ss_pred cccccccccc
Q psy5910 194 ETNFLEKLNN 203 (225)
Q Consensus 194 ~i~~~~~~~~ 203 (225)
+.+..|+.+
T Consensus 775 -v~m~~Pd~~ 783 (2695)
T 4akg_A 775 -FSMKSPQSG 783 (2695)
T ss_dssp -EECCCCCHH
T ss_pred -EEeeCCCHH
Confidence 555555544
No 90
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.01 E-value=1.6e-10 Score=88.25 Aligned_cols=36 Identities=28% Similarity=0.506 Sum_probs=30.6
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcc
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSF 76 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~ 76 (225)
.+++|+||||||||++|+++++.+ +.+++.+++..+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~ 93 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPEL 93 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHH
Confidence 589999999999999999999988 567777776554
No 91
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.98 E-value=2.9e-10 Score=95.76 Aligned_cols=168 Identities=14% Similarity=0.124 Sum_probs=90.7
Q ss_pred ceeechhhHHhhheeee-EecccceEeecccceeeeCCcEEE--EcCCCCcHHHHHHHHHHHh---------CCCeEEec
Q psy5910 5 RHIIGQHETKKIVSVGV-YNHYKRLFLLKSKNIYLEKSNILL--VGPTGCGKTLMVKTLAKII---------NVPIIVVD 72 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l-~~~~~~~~~~~~~~~~~~~~~vLl--~Gp~GtGKT~la~~ia~~~---------~~~~~~~~ 72 (225)
+.++|.++.++.|...+ ....... ....+.+++ +||+|+|||++++.+++.+ +..++.++
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~--------~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGA--------GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 93 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSS--------CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCC--------CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence 56788888888877655 3221110 012236778 9999999999999999876 34567777
Q ss_pred cCccccc-----------C----ccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHH
Q psy5910 73 ATSFTEA-----------G----YVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQS 137 (225)
Q Consensus 73 ~~~~~~~-----------~----~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~ 137 (225)
+...... + ..+.+.......+.... .....+.+|+|||++.+..... ........
T Consensus 94 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l---~~~~~~~llvlDe~~~l~~~~~-------~~~~~l~~ 163 (412)
T 1w5s_A 94 AFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNL---YVENHYLLVILDEFQSMLSSPR-------IAAEDLYT 163 (412)
T ss_dssp GGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHH---HHHTCEEEEEEESTHHHHSCTT-------SCHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHH---HhcCCeEEEEEeCHHHHhhccC-------cchHHHHH
Confidence 6322110 0 00111122222221111 0123577999999999975310 01225566
Q ss_pred HHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHH---HHHHhhcccccccccccccc
Q psy5910 138 LLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIE---NFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 138 Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~---~al~~Rf~~~i~~~~~~~~~ 204 (225)
|+..++..... ....++.+|.+++..- -.+.++ +.+.+||...+.+++.+.++
T Consensus 164 l~~~~~~~~~~----------~~~~~v~lI~~~~~~~----~~~~l~~~~~~~~~~~~~~i~l~~l~~~e 219 (412)
T 1w5s_A 164 LLRVHEEIPSR----------DGVNRIGFLLVASDVR----ALSYMREKIPQVESQIGFKLHLPAYKSRE 219 (412)
T ss_dssp HHTHHHHSCCT----------TSCCBEEEEEEEEETH----HHHHHHHHCHHHHTTCSEEEECCCCCHHH
T ss_pred HHHHHHhcccC----------CCCceEEEEEEecccc----HHHHHhhhcchhhhhcCCeeeeCCCCHHH
Confidence 66666542100 0001266776665410 012345 66777776667777776654
No 92
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.97 E-value=4.9e-10 Score=85.21 Aligned_cols=121 Identities=17% Similarity=0.200 Sum_probs=65.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhccc
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKK 120 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~ 120 (225)
.++|++||||||||++|.++++.+......+... .. .+. +. ......+++|||++.....
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g~i~~fans--~s-~f~-----------l~------~l~~~kIiiLDEad~~~~~ 118 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNS--TS-HFW-----------LE------PLTDTKVAMLDDATTTCWT 118 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCS--SS-CGG-----------GG------GGTTCSSEEEEEECHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEec--cc-hhh-----------hc------ccCCCCEEEEECCCchhHH
Confidence 4688999999999999999999985433211100 00 000 00 1123469999999864322
Q ss_pred ccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccc
Q psy5910 121 TDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEK 200 (225)
Q Consensus 121 ~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~ 200 (225)
.+...+..+|++....+..... .+.+.+..-+|.|||..+-. +..-+.+.+|+. .+.|+.|
T Consensus 119 ------------~~d~~lrn~ldG~~~~iD~Khr--~~~~~~~~PlIITtN~~~~~----~~~~~~L~SRi~-~f~F~~~ 179 (212)
T 1tue_A 119 ------------YFDTYMRNALDGNPISIDRKHK--PLIQLKCPPILLTTNIHPAK----DNRWPYLESRIT-VFEFPNA 179 (212)
T ss_dssp ------------HHHHHCHHHHHTCCEEEC------CCEEECCCCEEEEESSCTTS----SSSCHHHHTSCE-EEECCSC
T ss_pred ------------HHHHHHHHHhCCCcccHHHhhc--CccccCCCCEEEecCCCccc----ccchhhhhhhEE-EEEcCCC
Confidence 1456677888875433221110 11111113567777773322 223367888863 2455533
No 93
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.97 E-value=1.2e-09 Score=105.24 Aligned_cols=135 Identities=11% Similarity=0.114 Sum_probs=81.9
Q ss_pred eeechhhHHhhheeeeEecccc----------eEeecc------cce----------eee-CCcEEEEcCCCCcHHHHHH
Q psy5910 6 HIIGQHETKKIVSVGVYNHYKR----------LFLLKS------KNI----------YLE-KSNILLVGPTGCGKTLMVK 58 (225)
Q Consensus 6 ~i~G~~~~~~~l~~~l~~~~~~----------~~~~~~------~~~----------~~~-~~~vLl~Gp~GtGKT~la~ 58 (225)
.|.|.+++|+.+.+++.++... ....+. .+. ..| .+.+|++||||||||+||+
T Consensus 1021 ~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~GKT~la~ 1100 (1706)
T 3cmw_A 1021 SMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTL 1100 (1706)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHH
T ss_pred ecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCChHHHHH
Confidence 4578888888777777665532 001111 011 022 2348899999999999999
Q ss_pred HHHHHh---CCCeEEeccCcccc-----------cCccCC---cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccc
Q psy5910 59 TLAKII---NVPIIVVDATSFTE-----------AGYVGD---DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKT 121 (225)
Q Consensus 59 ~ia~~~---~~~~~~~~~~~~~~-----------~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~ 121 (225)
+++.+. +-+..+++.....+ ..|.++ ..++.++.++..+ +...++++|+||++++.+.+
T Consensus 1101 ~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~a----r~~~~~~i~~d~~~al~~~~ 1176 (1706)
T 3cmw_A 1101 QVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA----RSGAVDVIVVDSVAALTPKA 1176 (1706)
T ss_dssp HHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH----HHTCCSEEEESCGGGCCCHH
T ss_pred HHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHH----HhcCCeEEEeCchHhcCccc
Confidence 998766 56666666654321 124443 1355666666554 56689999999999999985
Q ss_pred ccc---CCC-CCChHHHHHHHHHHHhc
Q psy5910 122 DVV---SGK-DVSGEGVQQSLLKLIEG 144 (225)
Q Consensus 122 ~~~---~~~-~~~~~~~~~~Ll~~l~~ 144 (225)
... ... .....++.+.++..|++
T Consensus 1177 ~~~g~~~~~~~~~~~r~~~q~l~~~~~ 1203 (1706)
T 3cmw_A 1177 EIEGEIGDSHMGLAARMMSQAMRKLAG 1203 (1706)
T ss_dssp HHHSCTTCCCTTHHHHHHHHHHHHHHH
T ss_pred ccccccccccccHHHHHHHHHHHHHHh
Confidence 421 111 12334556677777764
No 94
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.78 E-value=2.2e-08 Score=76.34 Aligned_cols=126 Identities=11% Similarity=0.096 Sum_probs=70.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH--------hC-CCeEEeccCcccccCc------------cCCcH-HHHHHHHHHhcch
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKI--------IN-VPIIVVDATSFTEAGY------------VGDDV-ESIIQKLLHECDY 99 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~--------~~-~~~~~~~~~~~~~~~~------------~g~~~-~~~~~~~~~~~~~ 99 (225)
-.|++|+||||||++|...+.. .| .+++..+...+..... .++.. .......+.
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~---- 82 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIK---- 82 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTT----
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhh----
Confidence 4679999999999998876433 23 6666666554432111 01100 001111110
Q ss_pred hhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCc
Q psy5910 100 DVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGA 179 (225)
Q Consensus 100 ~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~ 179 (225)
.....++||+|||++.+.+.+..... . ..++..|+... +.. .-+|.+++.
T Consensus 83 -~~~~~~~vliIDEAq~l~~~~~~~~e-------~-~rll~~l~~~r------------~~~--~~iil~tq~------- 132 (199)
T 2r2a_A 83 -KPENIGSIVIVDEAQDVWPARSAGSK-------I-PENVQWLNTHR------------HQG--IDIFVLTQG------- 132 (199)
T ss_dssp -SGGGTTCEEEETTGGGTSBCCCTTCC-------C-CHHHHGGGGTT------------TTT--CEEEEEESC-------
T ss_pred -ccccCceEEEEEChhhhccCccccch-------h-HHHHHHHHhcC------------cCC--eEEEEECCC-------
Confidence 02245899999999999765421110 0 12444444211 112 455556655
Q ss_pred cccHHHHHHhhccccccccccc
Q psy5910 180 FSGIENFIINRINQETNFLEKL 201 (225)
Q Consensus 180 ~~~l~~al~~Rf~~~i~~~~~~ 201 (225)
++.|+.++++|+...+.+..+.
T Consensus 133 ~~~l~~~lr~ri~~~~~l~~~~ 154 (199)
T 2r2a_A 133 PKLLDQNLRTLVRKHYHIASNK 154 (199)
T ss_dssp GGGBCHHHHTTEEEEEEEEECS
T ss_pred HHHHhHHHHHHhheEEEEcCcc
Confidence 6789999999998887766643
No 95
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.75 E-value=8.2e-10 Score=90.00 Aligned_cols=37 Identities=24% Similarity=0.496 Sum_probs=30.0
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhC----CCeEEeccCcc
Q psy5910 40 KSNILLVGPTGCGKTLMVKTLAKIIN----VPIIVVDATSF 76 (225)
Q Consensus 40 ~~~vLl~Gp~GtGKT~la~~ia~~~~----~~~~~~~~~~~ 76 (225)
..+++|+||||||||+||+++++.+. .++..+++..+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l 192 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSF 192 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHH
Confidence 36899999999999999999998664 66776766544
No 96
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.71 E-value=4.2e-08 Score=79.69 Aligned_cols=73 Identities=16% Similarity=0.280 Sum_probs=43.2
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhCCCeEEecc--CcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhc
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKIINVPIIVVDA--TSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKIS 118 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~ 118 (225)
+.++|+||||||||+||..++...+.++.+++. .+..+ .+. .+....+..+.+.. .. .+ +|+||+++.+.
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~-~~~-~~le~~l~~i~~~l----~~-~~-LLVIDsI~aL~ 195 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLS-GYN-TDFNVFVDDIARAM----LQ-HR-VIVIDSLKNVI 195 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSST-TCB-CCHHHHHHHHHHHH----HH-CS-EEEEECCTTTC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhh-hhh-cCHHHHHHHHHHHH----hh-CC-EEEEecccccc
Confidence 346799999999999999998765544333333 22211 122 33344444333322 22 23 99999999996
Q ss_pred ccc
Q psy5910 119 KKT 121 (225)
Q Consensus 119 ~~~ 121 (225)
...
T Consensus 196 ~~~ 198 (331)
T 2vhj_A 196 GAA 198 (331)
T ss_dssp ---
T ss_pred ccc
Confidence 553
No 97
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.67 E-value=8.9e-08 Score=75.84 Aligned_cols=27 Identities=30% Similarity=0.567 Sum_probs=23.5
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhCC
Q psy5910 40 KSNILLVGPTGCGKTLMVKTLAKIINV 66 (225)
Q Consensus 40 ~~~vLl~Gp~GtGKT~la~~ia~~~~~ 66 (225)
+.+++|+||||||||++|++||+.++.
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 347999999999999999999997644
No 98
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.61 E-value=1.4e-07 Score=95.38 Aligned_cols=131 Identities=15% Similarity=0.153 Sum_probs=84.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccc
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKT 121 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~ 121 (225)
+..+.||+|||||++++.+|+.+|.+++.++|.+-.+ | ..+..+|.-. ...++-.+|||++++...
T Consensus 606 gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d--~------~~~g~i~~G~-----~~~GaW~cfDEfNrl~~~- 671 (3245)
T 3vkg_A 606 GGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFD--L------QAMSRIFVGL-----CQCGAWGCFDEFNRLEER- 671 (3245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCC--H------HHHHHHHHHH-----HHHTCEEEEETTTSSCHH-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCC--H------HHHHHHHhhH-----hhcCcEEEehhhhcCCHH-
Confidence 4568999999999999999999999999999977543 2 1223333221 235889999999999866
Q ss_pred cccCCCCCChHHHHHHHHHHHh-------cCCcCcccc-ccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhccc
Q psy5910 122 DVVSGKDVSGEGVQQSLLKLIE-------GVNLSITSL-AEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQ 193 (225)
Q Consensus 122 ~~~~~~~~~~~~~~~~Ll~~l~-------~~~~~~~~~-~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~ 193 (225)
+...+.+.+. .....+.-. +....-+. .+.++.|.|.-+. + ..++|+++++||..
T Consensus 672 ------------vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~--~~~vfiTmNpgY~--g-r~eLP~nLk~lFr~ 734 (3245)
T 3vkg_A 672 ------------ILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQ--DMGIFVTMNPGYA--G-RSNLPDNLKKLFRS 734 (3245)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHTCSEECCC---CEECCT--TCEEEECBCCCGG--G-CCCSCHHHHTTEEE
T ss_pred ------------HHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecC--CeEEEEEeCCCcc--C-cccChHHHHhhcEE
Confidence 4555444333 111111111 11111122 2788888887442 2 24899999999955
Q ss_pred ccccccccccc
Q psy5910 194 ETNFLEKLNNN 204 (225)
Q Consensus 194 ~i~~~~~~~~~ 204 (225)
+.+..|+.+.
T Consensus 735 -v~m~~Pd~~~ 744 (3245)
T 3vkg_A 735 -MAMIKPDREM 744 (3245)
T ss_dssp -EECCSCCHHH
T ss_pred -EEEeCCCHHH
Confidence 6666666543
No 99
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.59 E-value=1.6e-07 Score=77.03 Aligned_cols=52 Identities=17% Similarity=0.270 Sum_probs=41.2
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccC
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDAT 74 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~ 74 (225)
+.++|.++.++.|.+.+. ..+.++++||+|+|||++++.+++..+ ++++++.
T Consensus 12 ~~~~gR~~el~~L~~~l~----------------~~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~ 63 (350)
T 2qen_A 12 EDIFDREEESRKLEESLE----------------NYPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCR 63 (350)
T ss_dssp GGSCSCHHHHHHHHHHHH----------------HCSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHH
T ss_pred HhcCChHHHHHHHHHHHh----------------cCCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEee
Confidence 457899999998877661 124788999999999999999998875 6666654
No 100
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.55 E-value=4.2e-08 Score=99.12 Aligned_cols=144 Identities=15% Similarity=0.179 Sum_probs=80.1
Q ss_pred CCcEEEEcCCCCcHHHHHHH-HHHHhCCCeEEeccCcccccCccCCcHHHHHHHHHHh-cc-------hhh-hh---hCC
Q psy5910 40 KSNILLVGPTGCGKTLMVKT-LAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHE-CD-------YDV-EL---AEQ 106 (225)
Q Consensus 40 ~~~vLl~Gp~GtGKT~la~~-ia~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~-------~~~-~~---~~~ 106 (225)
..++||+||||||||++++. +++..+.+++.++++.-.+ ...+...+.. .. |.+ .. ...
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt--------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~ 1375 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT--------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKW 1375 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC--------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC--------HHHHHHHHhhcceEEeccCCCcccCCCcCCce
Confidence 35899999999999977655 4444455677777765432 2222222221 10 111 11 233
Q ss_pred CEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHH
Q psy5910 107 SIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENF 186 (225)
Q Consensus 107 ~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~a 186 (225)
.|+|+||++...+.. ...+.....|.++||....-.+...... ...+ +.+|+|.|.+-- +....+++.
T Consensus 1376 ~VlFiDDiNmp~~D~-------yGtQ~~ielLrqlld~~g~yd~~~~~~~-~i~d--~~~vaamnPp~~--gGr~~l~~R 1443 (3245)
T 3vkg_A 1376 LVVFCDEINLPSTDK-------YGTQRVITFIRQMVEKGGFWRTSDHTWI-KLDK--IQFVGACNPPTD--AGRVQLTHR 1443 (3245)
T ss_dssp EEEEETTTTCCCCCT-------TSCCHHHHHHHHHHHHSEEEETTTTEEE-EESS--EEEEEEECCTTS--TTCCCCCHH
T ss_pred EEEEecccCCCCccc-------cccccHHHHHHHHHHcCCeEECCCCeEE-EecC--eEEEEEcCCCCC--CCCccCCHH
Confidence 699999999754431 1112366778888885443322111111 1123 666677666211 112469999
Q ss_pred HHhhcccccccccccccc
Q psy5910 187 IINRINQETNFLEKLNNN 204 (225)
Q Consensus 187 l~~Rf~~~i~~~~~~~~~ 204 (225)
++|||.. +.++.|+.+.
T Consensus 1444 f~r~F~v-i~i~~ps~es 1460 (3245)
T 3vkg_A 1444 FLRHAPI-LLVDFPSTSS 1460 (3245)
T ss_dssp HHTTCCE-EECCCCCHHH
T ss_pred HHhhceE-EEeCCCCHHH
Confidence 9999966 4555555443
No 101
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.51 E-value=1e-06 Score=65.90 Aligned_cols=26 Identities=31% Similarity=0.590 Sum_probs=22.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVP 67 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~ 67 (225)
.+.|+||+|||||||++.++..++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~ 27 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 46799999999999999999988643
No 102
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.40 E-value=9.3e-07 Score=72.50 Aligned_cols=53 Identities=17% Similarity=0.283 Sum_probs=43.3
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCc
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATS 75 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~ 75 (225)
+.++|.++.++.|.. +. . +.++++||+|+|||+|++.+++..+..++++++..
T Consensus 13 ~~~~gR~~el~~L~~-l~----------------~-~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~ 65 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LR----------------A-PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRK 65 (357)
T ss_dssp GGSCCCHHHHHHHHH-TC----------------S-SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred HHhcChHHHHHHHHH-hc----------------C-CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchh
Confidence 567899988888877 61 1 47889999999999999999998877777777654
No 103
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.39 E-value=7.3e-07 Score=87.28 Aligned_cols=79 Identities=16% Similarity=0.217 Sum_probs=51.1
Q ss_pred eCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCccccc---CccC-----------CcHHHHHHHHHHhcchhh
Q psy5910 39 EKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEA---GYVG-----------DDVESIIQKLLHECDYDV 101 (225)
Q Consensus 39 ~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~---~~~g-----------~~~~~~~~~~~~~~~~~~ 101 (225)
+..+++|+||||||||+||.+++... +..+.+++....... ...| .+.+..+..+.. .+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~----lv 1501 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDA----LA 1501 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHH----HH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHH----HH
Confidence 34578899999999999999987765 556777776543110 0011 122233333322 23
Q ss_pred hhhCCCEEEEcchhhhcccc
Q psy5910 102 ELAEQSIIYIDEIDKISKKT 121 (225)
Q Consensus 102 ~~~~~~vl~iDEid~l~~~~ 121 (225)
+...+.+|+|||++.+.+..
T Consensus 1502 r~~~~~lVVIDsi~al~p~~ 1521 (2050)
T 3cmu_A 1502 RSGAVDVIVVDSVAALTPKA 1521 (2050)
T ss_dssp HHTCCSEEEESCGGGCCCHH
T ss_pred hcCCCCEEEEcChhHhcccc
Confidence 45689999999999888753
No 104
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.30 E-value=4.9e-07 Score=68.63 Aligned_cols=42 Identities=33% Similarity=0.472 Sum_probs=28.4
Q ss_pred ecccceeeeCC-cEEEEcCCCCcHHHHHHHHHHHhCCCeEEec
Q psy5910 31 LKSKNIYLEKS-NILLVGPTGCGKTLMVKTLAKIINVPIIVVD 72 (225)
Q Consensus 31 ~~~~~~~~~~~-~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~ 72 (225)
.++.++..+++ .++|+|||||||||+++.+++.++.+++..+
T Consensus 15 ~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 15 TENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp ---------CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 44556666554 5669999999999999999999998887554
No 105
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.21 E-value=1e-06 Score=65.79 Aligned_cols=32 Identities=38% Similarity=0.487 Sum_probs=28.4
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhCCCeEEec
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKIINVPIIVVD 72 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~ 72 (225)
..++|+|+|||||||+|+.+++.++.+++..+
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 46889999999999999999999998887654
No 106
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=98.20 E-value=1.4e-06 Score=64.66 Aligned_cols=32 Identities=25% Similarity=0.468 Sum_probs=28.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEecc
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDA 73 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~ 73 (225)
.++|+|+||+||||+++.+++.++.+++.++.
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~ 36 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVLPEPWLAFGV 36 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSSSCEEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCeEEecc
Confidence 57799999999999999999999988876544
No 107
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.13 E-value=4.5e-05 Score=58.58 Aligned_cols=32 Identities=31% Similarity=0.360 Sum_probs=24.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEecc
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVVDA 73 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~ 73 (225)
.++|+||||+|||++++.++..+ +.++..++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 45599999999999999998654 455555543
No 108
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.12 E-value=1.6e-05 Score=60.74 Aligned_cols=34 Identities=21% Similarity=0.262 Sum_probs=27.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCc
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDATS 75 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~ 75 (225)
-++++||||+|||++++.++...+.+.++++...
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 4559999999999999999885566777776644
No 109
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=98.11 E-value=2.5e-06 Score=62.75 Aligned_cols=31 Identities=35% Similarity=0.521 Sum_probs=26.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEec
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVD 72 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~ 72 (225)
.|+|.|+|||||||+|+.+++.++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 4679999999999999999999988776544
No 110
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.10 E-value=3.2e-06 Score=69.89 Aligned_cols=46 Identities=26% Similarity=0.534 Sum_probs=39.8
Q ss_pred eeeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 19 VGVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 19 ~~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
+.+...|+....+++.++..+.+.++ |.||+|||||||.+.|+...
T Consensus 8 ~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 8 GHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred EeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 34566677778889999999998887 99999999999999999876
No 111
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.08 E-value=3e-05 Score=60.41 Aligned_cols=36 Identities=25% Similarity=0.374 Sum_probs=25.0
Q ss_pred eeCCcEE-EEcCCCCcHHHHHHHHH--HH--hCCCeEEecc
Q psy5910 38 LEKSNIL-LVGPTGCGKTLMVKTLA--KI--INVPIIVVDA 73 (225)
Q Consensus 38 ~~~~~vL-l~Gp~GtGKT~la~~ia--~~--~~~~~~~~~~ 73 (225)
.+.+.++ |.||+|+|||||++.++ .. .+.....+..
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~ 67 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 3444444 99999999999999988 33 2444555444
No 112
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.08 E-value=3.7e-06 Score=65.13 Aligned_cols=46 Identities=17% Similarity=0.376 Sum_probs=38.0
Q ss_pred eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910 20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~ 65 (225)
.+...|+....+++.++..+.+.++ |.||+|+|||||.+.++....
T Consensus 9 ~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 9 NIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp EEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred eEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4455565566788899999998877 999999999999999998763
No 113
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=98.07 E-value=2.3e-06 Score=63.44 Aligned_cols=30 Identities=30% Similarity=0.562 Sum_probs=26.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVV 71 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~ 71 (225)
.++|.|+|||||||+|+.|++.++.+++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~ 35 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDS 35 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 578999999999999999999998876543
No 114
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.07 E-value=4.1e-06 Score=69.77 Aligned_cols=47 Identities=23% Similarity=0.567 Sum_probs=40.2
Q ss_pred eeeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910 19 VGVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 19 ~~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~ 65 (225)
+.+...|.....+++.++..+.+.++ |.||+|||||||.+.|+....
T Consensus 7 ~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 7 QNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp EEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 34566677778889999999998888 999999999999999998763
No 115
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=98.06 E-value=3.2e-06 Score=63.04 Aligned_cols=31 Identities=35% Similarity=0.573 Sum_probs=27.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEec
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVD 72 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~ 72 (225)
.|+|.|+|||||||+|+.+++.++.+++..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 5789999999999999999999998876544
No 116
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=98.06 E-value=3.2e-06 Score=62.19 Aligned_cols=32 Identities=22% Similarity=0.518 Sum_probs=28.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhCCCeEEec
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKIINVPIIVVD 72 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~ 72 (225)
.+++|.|+|||||||+++.+++.++.+++..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 47889999999999999999999999886543
No 117
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=98.06 E-value=2.7e-06 Score=63.25 Aligned_cols=32 Identities=44% Similarity=0.542 Sum_probs=27.8
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhCCCeEEec
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKIINVPIIVVD 72 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~ 72 (225)
..|+|+|+||+||||+++.+++.++.+++..+
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d 43 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSGLKYINVG 43 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHH
Confidence 46889999999999999999999988766543
No 118
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.05 E-value=4.4e-06 Score=66.42 Aligned_cols=46 Identities=17% Similarity=0.475 Sum_probs=39.6
Q ss_pred eeeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 19 VGVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 19 ~~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
+.+...|.....+++.++..+.+.++ |.||+|+|||||++.++...
T Consensus 15 ~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 15 SHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred EeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34566677778889999999998887 99999999999999999876
No 119
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.05 E-value=3.2e-06 Score=62.35 Aligned_cols=28 Identities=43% Similarity=0.759 Sum_probs=24.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeE
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPII 69 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~ 69 (225)
.+.|+|||||||||+++.++..++.+++
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 5779999999999999999999886544
No 120
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=98.03 E-value=4.8e-06 Score=66.06 Aligned_cols=46 Identities=15% Similarity=0.398 Sum_probs=38.5
Q ss_pred eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910 20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~ 65 (225)
.+...|.....+++.++..+.+.++ |.||+|+|||||.+.|+..+.
T Consensus 11 ~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 11 DLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp EEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred eEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4555566667788899999998877 999999999999999998763
No 121
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.01 E-value=3.2e-06 Score=63.37 Aligned_cols=35 Identities=29% Similarity=0.530 Sum_probs=29.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcc
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSF 76 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~ 76 (225)
.+.|.||||+||||+++.++...+...+.++..++
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 45599999999999999999987777777776544
No 122
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=98.01 E-value=1.3e-05 Score=60.05 Aligned_cols=30 Identities=23% Similarity=0.355 Sum_probs=21.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEe
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVV 71 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~ 71 (225)
-++++||+|+||||++..++..+ +...+.+
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 45699999999999985555433 4554444
No 123
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=98.01 E-value=6e-06 Score=65.31 Aligned_cols=46 Identities=17% Similarity=0.491 Sum_probs=38.5
Q ss_pred eeeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 19 VGVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 19 ~~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
+.+...|.....+++.++..+.+.++ |.||+|+|||||.+.++..+
T Consensus 11 ~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 11 ENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34555666667888999999998777 99999999999999999876
No 124
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=98.01 E-value=7.8e-06 Score=64.37 Aligned_cols=44 Identities=30% Similarity=0.467 Sum_probs=37.0
Q ss_pred eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHH
Q psy5910 20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~ 63 (225)
.+...|.....+++.++..+.+.++ |.||+|+|||||++.|+..
T Consensus 8 ~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 8 DLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4455566666788899999998777 9999999999999999985
No 125
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.00 E-value=6.8e-06 Score=64.31 Aligned_cols=45 Identities=22% Similarity=0.488 Sum_probs=37.7
Q ss_pred eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
.+...|.....+++.++..+.+.++ |.||+|+|||||.+.++..+
T Consensus 11 ~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 11 SLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4555566666788899999988777 99999999999999999876
No 126
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.99 E-value=4.7e-06 Score=63.15 Aligned_cols=30 Identities=37% Similarity=0.667 Sum_probs=26.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVV 71 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~ 71 (225)
.|+|.|+|||||||+|+.+++.++.+++..
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 577999999999999999999998887654
No 127
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.99 E-value=7.6e-06 Score=67.75 Aligned_cols=45 Identities=24% Similarity=0.506 Sum_probs=37.8
Q ss_pred eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
.+...|.....+++.++..+.+.++ |.||+|||||||.+.|+...
T Consensus 8 ~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 8 NLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 4555566666788899999988777 99999999999999999876
No 128
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.99 E-value=8e-06 Score=67.98 Aligned_cols=45 Identities=22% Similarity=0.595 Sum_probs=38.0
Q ss_pred eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
.+...|.....+++.++..+.+.++ |.||+|||||||.+.|+...
T Consensus 8 ~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 8 DVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred eEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 4555566666788899999988877 99999999999999999876
No 129
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.99 E-value=3.5e-06 Score=63.06 Aligned_cols=31 Identities=35% Similarity=0.448 Sum_probs=26.0
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHH-hCCCeEEe
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKI-INVPIIVV 71 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~-~~~~~~~~ 71 (225)
..++|+|+|||||||+++.+++. ++.+++..
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 35779999999999999999998 67666543
No 130
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.98 E-value=7e-06 Score=65.14 Aligned_cols=47 Identities=21% Similarity=0.502 Sum_probs=38.8
Q ss_pred eeeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910 19 VGVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 19 ~~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~ 65 (225)
+.+...|.....+++.++..+.+.++ |.||+|+|||||++.|+..+.
T Consensus 28 ~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 28 HQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp EEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 34555666667788999999988777 999999999999999998763
No 131
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.98 E-value=5.9e-06 Score=65.17 Aligned_cols=32 Identities=34% Similarity=0.489 Sum_probs=27.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEecc
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDA 73 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~ 73 (225)
.+++.|||||||||+|+.+|+.++.+++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 36799999999999999999999988776544
No 132
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.97 E-value=7.2e-06 Score=67.96 Aligned_cols=46 Identities=24% Similarity=0.550 Sum_probs=38.0
Q ss_pred eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910 20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~ 65 (225)
.+...|+....+++.++..+.+.++ |.||+|||||||.+.|+....
T Consensus 8 ~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 8 NIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp EEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred eEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 4555566556788889999988877 999999999999999998763
No 133
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.97 E-value=8.2e-06 Score=67.88 Aligned_cols=45 Identities=24% Similarity=0.584 Sum_probs=38.2
Q ss_pred eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
.+...|.....+++.++..+.+.++ |.||+|||||||.+.|+...
T Consensus 16 ~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 16 NLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 4556666666788899999988877 99999999999999999876
No 134
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.97 E-value=9.2e-06 Score=64.62 Aligned_cols=45 Identities=20% Similarity=0.345 Sum_probs=37.8
Q ss_pred eeeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHH
Q psy5910 19 VGVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 19 ~~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~ 63 (225)
+.+...|.....+++.++..+.+.++ |.||+|+|||||++.|+..
T Consensus 24 ~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 24 KDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34555666667788999999988777 9999999999999999986
No 135
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.96 E-value=5.4e-06 Score=62.10 Aligned_cols=30 Identities=27% Similarity=0.484 Sum_probs=26.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVV 71 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~ 71 (225)
.++|.|+||+||||+++.+++.++.+++..
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 567999999999999999999998876654
No 136
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.95 E-value=8.8e-06 Score=65.13 Aligned_cols=45 Identities=22% Similarity=0.245 Sum_probs=38.1
Q ss_pred eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
.+...|.....+++.++..+.+.++ |.||+|+|||||.+.|+..+
T Consensus 26 ~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 26 QIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4555666667788999999998777 99999999999999999876
No 137
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.95 E-value=1.8e-05 Score=67.80 Aligned_cols=47 Identities=26% Similarity=0.414 Sum_probs=33.2
Q ss_pred CcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910 3 LDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 3 l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~ 64 (225)
+++---+|.+++..+...+. .+.+.+++.|+||||||+++.++++.+
T Consensus 23 ~~~Ln~~Q~~av~~~~~~i~---------------~~~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 23 FDDLTEGQKNAFNIVMKAIK---------------EKKHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp SSCCCHHHHHHHHHHHHHHH---------------SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHh---------------cCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 33333467777776655441 122478899999999999999998877
No 138
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.95 E-value=7.3e-06 Score=62.13 Aligned_cols=31 Identities=26% Similarity=0.474 Sum_probs=26.6
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKIINVPIIVV 71 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~ 71 (225)
..++|.|+||+||||+|+.+++.++..++..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~ 49 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACGYPFIEG 49 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHTCCEEEG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCEEEeC
Confidence 3577999999999999999999998766553
No 139
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.95 E-value=7.9e-06 Score=62.83 Aligned_cols=45 Identities=29% Similarity=0.567 Sum_probs=37.3
Q ss_pred eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910 20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~ 65 (225)
.+...|+. ..+++.++..+.+.++ |.||+|+|||||.+.++..+.
T Consensus 15 ~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 15 DLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp EEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45555666 7788899999988776 999999999999999998763
No 140
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.94 E-value=9.1e-06 Score=63.39 Aligned_cols=37 Identities=24% Similarity=0.633 Sum_probs=32.7
Q ss_pred eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 28 LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 28 ~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
...+++.++..+.+.++ |.||+|||||||.+.++...
T Consensus 18 ~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 35688899999998877 99999999999999999776
No 141
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.94 E-value=9.1e-06 Score=64.22 Aligned_cols=46 Identities=26% Similarity=0.516 Sum_probs=38.6
Q ss_pred eeeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 19 VGVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 19 ~~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
+.+...|+....+++.++..+.+.++ |.||+|+|||||.+.|+...
T Consensus 19 ~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 19 KDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34556666667788899999988777 99999999999999999876
No 142
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.93 E-value=5.6e-06 Score=60.94 Aligned_cols=30 Identities=30% Similarity=0.606 Sum_probs=26.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVV 71 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~ 71 (225)
.++|.|+|||||||+|+.+++.++.+++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVDT 33 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcc
Confidence 578999999999999999999998776543
No 143
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.91 E-value=6e-06 Score=60.61 Aligned_cols=29 Identities=38% Similarity=0.527 Sum_probs=24.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVV 71 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~ 71 (225)
-++|.|||||||||+|+.+ +.++.+++..
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4679999999999999999 8888876654
No 144
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.91 E-value=8.1e-06 Score=67.47 Aligned_cols=45 Identities=24% Similarity=0.502 Sum_probs=36.6
Q ss_pred eeEecc-cceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 20 GVYNHY-KRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 20 ~l~~~~-~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
.+...| +....+++.++..+.+.++ |.||+|||||||.+.|+...
T Consensus 19 ~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 19 GVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 445555 4445677888999988777 99999999999999999876
No 145
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.91 E-value=1.1e-05 Score=63.42 Aligned_cols=46 Identities=20% Similarity=0.486 Sum_probs=37.5
Q ss_pred eeeEecc--cceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 19 VGVYNHY--KRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 19 ~~l~~~~--~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
+.+...| .....+++.++..+.+.++ |.||+|+|||||++.|+..+
T Consensus 11 ~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 11 RNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3455556 3456788889999998777 99999999999999999876
No 146
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.91 E-value=6.9e-06 Score=63.15 Aligned_cols=31 Identities=23% Similarity=0.470 Sum_probs=26.6
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKIINVPIIVV 71 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~ 71 (225)
..++|.|+|||||||+|+.+++.++.+++..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 4678999999999999999999998765543
No 147
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.90 E-value=9.5e-06 Score=64.79 Aligned_cols=45 Identities=20% Similarity=0.472 Sum_probs=37.0
Q ss_pred eeEecccc-eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 20 GVYNHYKR-LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 20 ~l~~~~~~-~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
.+...|.. ...++++++..+.+.++ |.||+|+|||||++.++..+
T Consensus 12 ~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 12 ELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 45555543 45788899999998877 99999999999999999876
No 148
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.90 E-value=8.8e-06 Score=59.63 Aligned_cols=30 Identities=30% Similarity=0.478 Sum_probs=26.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVV 71 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~ 71 (225)
.|+|.|+|||||||+|+.+++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 477999999999999999999999877654
No 149
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.90 E-value=8e-06 Score=62.54 Aligned_cols=30 Identities=27% Similarity=0.476 Sum_probs=26.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVV 71 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~ 71 (225)
.++|.||||+||||+|+.+++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 477999999999999999999998776654
No 150
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.90 E-value=7e-06 Score=61.64 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=26.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKIINVPIIVV 71 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~ 71 (225)
..++|.|+|||||||+|+.+++.++.+++..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 3567999999999999999999998765543
No 151
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.90 E-value=7.8e-06 Score=60.94 Aligned_cols=29 Identities=24% Similarity=0.516 Sum_probs=24.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIV 70 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~ 70 (225)
.++|.|+|||||||+++.+++.++.+++.
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 57799999999999999999998865543
No 152
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.89 E-value=8.8e-06 Score=62.25 Aligned_cols=30 Identities=30% Similarity=0.525 Sum_probs=26.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVV 71 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~ 71 (225)
.++|.||||+||||+|+.+++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 477999999999999999999998876654
No 153
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.89 E-value=3.3e-06 Score=64.03 Aligned_cols=35 Identities=20% Similarity=0.404 Sum_probs=27.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcc
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSF 76 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~ 76 (225)
.+.|.|||||||||+++.++..+ |...+.++...+
T Consensus 27 ~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 34499999999999999999988 554446665544
No 154
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.88 E-value=7.3e-06 Score=61.37 Aligned_cols=29 Identities=14% Similarity=0.287 Sum_probs=25.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIV 70 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~ 70 (225)
.|+|.|+|||||||+|+.+++.++.+++.
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 57799999999999999999999876544
No 155
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.88 E-value=6.8e-06 Score=64.76 Aligned_cols=36 Identities=36% Similarity=0.558 Sum_probs=30.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCccc
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFT 77 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~ 77 (225)
.++|.|+||+||||+|+.+++.++..++.+++..+.
T Consensus 34 ~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r 69 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFR 69 (253)
T ss_dssp EEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHH
Confidence 567999999999999999999998777778877653
No 156
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.87 E-value=1e-05 Score=66.79 Aligned_cols=44 Identities=27% Similarity=0.551 Sum_probs=36.2
Q ss_pred eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
.+...|... .+++.++..+.+.++ |.||+|||||||.+.|+...
T Consensus 6 ~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 6 SLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 344555544 778888999988777 99999999999999999876
No 157
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.86 E-value=7.3e-06 Score=63.14 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=22.5
Q ss_pred EeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 29 FLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 29 ~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
..++++++..+.+.++ |+||+|+|||||++.|+...
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3456677777777666 99999999999999999977
No 158
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.86 E-value=1.1e-05 Score=67.46 Aligned_cols=46 Identities=17% Similarity=0.391 Sum_probs=37.4
Q ss_pred eeeEecc--cceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 19 VGVYNHY--KRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 19 ~~l~~~~--~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
+.+...| .....++++++..+.+.++ |.||+|||||||.+.|+...
T Consensus 23 ~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 23 KDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 3455556 4456788889999998887 99999999999999999754
No 159
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.86 E-value=2.2e-06 Score=67.51 Aligned_cols=43 Identities=28% Similarity=0.370 Sum_probs=33.0
Q ss_pred EeecccceeeeC----CcEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910 29 FLLKSKNIYLEK----SNILLVGPTGCGKTLMVKTLAKIINVPIIVV 71 (225)
Q Consensus 29 ~~~~~~~~~~~~----~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~ 71 (225)
..+++.++.... ..+.|+|++||||||+++.+++.++.+++..
T Consensus 33 ~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 33 QILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp HHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred hhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 344555555553 4677999999999999999999998876654
No 160
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.86 E-value=7.8e-06 Score=60.74 Aligned_cols=29 Identities=31% Similarity=0.440 Sum_probs=22.2
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhCCCeE
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKIINVPII 69 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~ 69 (225)
..++|.|+|||||||+|+.+++.++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 35779999999999999999999998876
No 161
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.86 E-value=8.4e-06 Score=65.52 Aligned_cols=35 Identities=31% Similarity=0.493 Sum_probs=29.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcc
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSF 76 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~ 76 (225)
.++|.||||+||||+|+.+++.++..++.+++..+
T Consensus 35 livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 46699999999999999999988656677776544
No 162
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.85 E-value=7.5e-06 Score=61.15 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=22.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~ 65 (225)
.++|.|+||+||||+++.+++.++
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 577999999999999999999886
No 163
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.85 E-value=1.1e-05 Score=59.55 Aligned_cols=28 Identities=21% Similarity=0.475 Sum_probs=23.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeE
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPII 69 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~ 69 (225)
.++|.||||+||||+++.++..+|..++
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~~g~~~i 37 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQLHAAFL 37 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHTCEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHhhCcEEE
Confidence 4669999999999999999998876444
No 164
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.85 E-value=1.3e-05 Score=63.14 Aligned_cols=45 Identities=33% Similarity=0.583 Sum_probs=36.5
Q ss_pred eEeccc-ceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910 21 VYNHYK-RLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 21 l~~~~~-~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~ 65 (225)
+...|. ....+++.++..+.+.++ |.||+|+|||||.+.++..+.
T Consensus 10 l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 10 LGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp EEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred EEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 444554 455778889999988777 999999999999999998763
No 165
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.85 E-value=1.2e-05 Score=60.84 Aligned_cols=33 Identities=24% Similarity=0.505 Sum_probs=26.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcc
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSF 76 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~ 76 (225)
.+.|.||+||||||+++.++..+|. +.+++..+
T Consensus 31 ~i~l~G~~GsGKSTl~~~L~~~~g~--~~i~~d~~ 63 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAHGVADETGL--EFAEADAF 63 (200)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC--EEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCC--eEEccccc
Confidence 4559999999999999999999865 44444443
No 166
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.85 E-value=1.1e-05 Score=62.94 Aligned_cols=45 Identities=18% Similarity=0.361 Sum_probs=35.4
Q ss_pred eeEeccc--ceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 20 GVYNHYK--RLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 20 ~l~~~~~--~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
.+...|. ....+++.++..+.+.++ |.||+|+|||||++.|+..+
T Consensus 8 ~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 8 NATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3444454 245677888888888777 99999999999999999875
No 167
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.85 E-value=5.7e-06 Score=68.96 Aligned_cols=68 Identities=16% Similarity=0.236 Sum_probs=42.5
Q ss_pred cceeeeCC-cEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEc
Q psy5910 34 KNIYLEKS-NILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYID 112 (225)
Q Consensus 34 ~~~~~~~~-~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iD 112 (225)
.++..+.+ .++|+|||||||||++++++..++..++.+.... ......+. . ..+..++++|
T Consensus 162 ~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~--------~~~~~~lg----~------~~q~~~~l~d 223 (377)
T 1svm_A 162 MVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPL--------DRLNFELG----V------AIDQFLVVFE 223 (377)
T ss_dssp HHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCT--------TTHHHHHG----G------GTTCSCEEET
T ss_pred cccccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccc--------hhHHHHHH----H------hcchhHHHHH
Confidence 33444544 5569999999999999999998866544322211 11000011 1 1255678999
Q ss_pred chhhhcc
Q psy5910 113 EIDKISK 119 (225)
Q Consensus 113 Eid~l~~ 119 (225)
+++.+..
T Consensus 224 d~~~~~~ 230 (377)
T 1svm_A 224 DVKGTGG 230 (377)
T ss_dssp TCCCSTT
T ss_pred HHHHHHH
Confidence 9998875
No 168
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.85 E-value=2.8e-05 Score=60.28 Aligned_cols=37 Identities=24% Similarity=0.329 Sum_probs=27.2
Q ss_pred eCCc-EEEEcCCCCcHHHHHHHHHHH--h-------CCCeEEeccCc
Q psy5910 39 EKSN-ILLVGPTGCGKTLMVKTLAKI--I-------NVPIIVVDATS 75 (225)
Q Consensus 39 ~~~~-vLl~Gp~GtGKT~la~~ia~~--~-------~~~~~~~~~~~ 75 (225)
+.+. ++|+||||+|||++++.++.. . +...++++...
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 4444 559999999999999999984 3 34566666544
No 169
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.84 E-value=0.00012 Score=62.03 Aligned_cols=35 Identities=34% Similarity=0.466 Sum_probs=27.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCc
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATS 75 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~ 75 (225)
..++++|++|+||||++..+|..+ +..+..+++..
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~ 138 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDT 138 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCC
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 356699999999999999998777 56666666643
No 170
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.84 E-value=1.1e-05 Score=63.18 Aligned_cols=45 Identities=22% Similarity=0.404 Sum_probs=35.4
Q ss_pred eeEecc-cceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 20 GVYNHY-KRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 20 ~l~~~~-~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
.+...| .....+++.++..+.+.++ |.||+|+|||||.+.|+..+
T Consensus 6 ~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 6 HVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344455 3344677788888888777 99999999999999999876
No 171
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.84 E-value=9.5e-06 Score=61.06 Aligned_cols=29 Identities=21% Similarity=0.361 Sum_probs=25.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIV 70 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~ 70 (225)
.|+|.|+|||||||+|+.+++.++.+++.
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 42 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEKYGFTHLS 42 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 57799999999999999999999865544
No 172
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.83 E-value=1.1e-05 Score=62.65 Aligned_cols=31 Identities=32% Similarity=0.436 Sum_probs=26.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKIINVPIIVV 71 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~ 71 (225)
..++|.|+|||||||+|+.|++.++.+++..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 4688999999999999999999998765543
No 173
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.83 E-value=8.3e-06 Score=67.42 Aligned_cols=45 Identities=29% Similarity=0.503 Sum_probs=36.2
Q ss_pred eeEecccceE--eecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 20 GVYNHYKRLF--LLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 20 ~l~~~~~~~~--~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
.+...|+... .+++.++..+.+.++ |.||+|||||||.+.|+...
T Consensus 8 ~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 8 NVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred eEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3444555444 677888999888777 99999999999999999876
No 174
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.83 E-value=1.2e-05 Score=63.06 Aligned_cols=39 Identities=10% Similarity=0.210 Sum_probs=25.2
Q ss_pred EeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhCCC
Q psy5910 29 FLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIINVP 67 (225)
Q Consensus 29 ~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~~~ 67 (225)
..+++.++..+.+.++ |.||+|+||||+++.++..+|..
T Consensus 13 ~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 13 LGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp ----------CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred eeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 3456677777777666 99999999999999999987643
No 175
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.82 E-value=1.4e-05 Score=63.78 Aligned_cols=45 Identities=27% Similarity=0.437 Sum_probs=36.5
Q ss_pred eeEecccc---eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 20 GVYNHYKR---LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 20 ~l~~~~~~---~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
.+...|.. ...+++.++..+.+.++ |.||+|+|||||++.|+..+
T Consensus 21 ~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 21 DVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45555543 45678888999888777 99999999999999999876
No 176
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.82 E-value=1.1e-05 Score=62.40 Aligned_cols=31 Identities=13% Similarity=0.305 Sum_probs=26.4
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKIINVPIIVV 71 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~ 71 (225)
..++|.|+|||||||+|+.+++.++.+++..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 4677999999999999999999988765543
No 177
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.82 E-value=7.9e-05 Score=61.48 Aligned_cols=74 Identities=23% Similarity=0.229 Sum_probs=44.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCccccc------Ccc--------CCcHHHHHHHHHHhcchhhhhh
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEA------GYV--------GDDVESIIQKLLHECDYDVELA 104 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~------~~~--------g~~~~~~~~~~~~~~~~~~~~~ 104 (225)
-++++||||+|||+||..++... +.++.+++....... ++. ..+....+..+ ...+...
T Consensus 63 iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~----~~l~~~~ 138 (349)
T 2zr9_A 63 VIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIA----DMLVRSG 138 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHH----HHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHH----HHHHhcC
Confidence 45699999999999999888654 566777766432110 100 01122222111 1112234
Q ss_pred CCCEEEEcchhhhcc
Q psy5910 105 EQSIIYIDEIDKISK 119 (225)
Q Consensus 105 ~~~vl~iDEid~l~~ 119 (225)
.+.+|+||++..+.+
T Consensus 139 ~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 139 ALDIIVIDSVAALVP 153 (349)
T ss_dssp CCSEEEEECGGGCCC
T ss_pred CCCEEEEcChHhhcc
Confidence 688999999999874
No 178
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.81 E-value=0.00011 Score=56.64 Aligned_cols=31 Identities=23% Similarity=0.276 Sum_probs=23.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEec
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVVD 72 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~ 72 (225)
-++++||+|+||||++..++..+ +..++.++
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~ 47 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFK 47 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEE
Confidence 45589999999999887776655 55666664
No 179
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.81 E-value=1.2e-05 Score=60.09 Aligned_cols=30 Identities=13% Similarity=0.261 Sum_probs=25.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVV 71 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~ 71 (225)
.++|.|+|||||||+|+.+++.++.+++..
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 567999999999999999999988765543
No 180
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.81 E-value=1.5e-05 Score=60.90 Aligned_cols=28 Identities=36% Similarity=0.498 Sum_probs=24.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeE
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPII 69 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~ 69 (225)
.++|.||||+||+|.|+.|++.++.+.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~i 29 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHI 29 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEE
Confidence 4679999999999999999999987543
No 181
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.80 E-value=2.2e-05 Score=62.41 Aligned_cols=37 Identities=24% Similarity=0.467 Sum_probs=32.5
Q ss_pred eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 28 LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 28 ~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
...+++.++..+.+.++ |.||+|+|||||.+.|+..+
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45678889999888777 99999999999999999876
No 182
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.80 E-value=1.5e-05 Score=60.97 Aligned_cols=30 Identities=23% Similarity=0.397 Sum_probs=26.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVV 71 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~ 71 (225)
.++|.|+||+||||+|+.+++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 478999999999999999999998877655
No 183
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.79 E-value=1.7e-05 Score=61.55 Aligned_cols=46 Identities=26% Similarity=0.444 Sum_probs=36.2
Q ss_pred eeEeccc--ceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910 20 GVYNHYK--RLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 20 ~l~~~~~--~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~ 65 (225)
.+...|. ....+++.++..+.+.++ |.||+|+|||||.+.++..+.
T Consensus 11 ~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 11 NVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp EEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3444552 345677888889888777 999999999999999998763
No 184
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.79 E-value=9.9e-06 Score=59.89 Aligned_cols=30 Identities=20% Similarity=0.308 Sum_probs=23.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHH-HhCCCeEEecc
Q psy5910 42 NILLVGPTGCGKTLMVKTLAK-IINVPIIVVDA 73 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~-~~~~~~~~~~~ 73 (225)
-++|.|+||+||||+|+.+++ .++ +..++.
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~~~~~--~~~i~~ 34 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIAKNPG--FYNINR 34 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSTT--EEEECH
T ss_pred EEEEecCCCCCHHHHHHHHHhhcCC--cEEecH
Confidence 467999999999999999998 444 444444
No 185
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.79 E-value=1.3e-05 Score=61.62 Aligned_cols=30 Identities=23% Similarity=0.444 Sum_probs=26.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVV 71 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~ 71 (225)
.|+|.|+|||||||+|+.+++.++.+++..
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 578999999999999999999998776654
No 186
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.79 E-value=1.5e-05 Score=58.88 Aligned_cols=26 Identities=23% Similarity=0.571 Sum_probs=21.1
Q ss_pred cceeeeCCcEE-EEcCCCCcHHHHHHH
Q psy5910 34 KNIYLEKSNIL-LVGPTGCGKTLMVKT 59 (225)
Q Consensus 34 ~~~~~~~~~vL-l~Gp~GtGKT~la~~ 59 (225)
.++..+.+.++ |+||+||||||+++.
T Consensus 2 vsl~i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 2 MKLTIPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEEESSEEEEEECCTTSCHHHHHHH
T ss_pred ccccCCCCEEEEEECCCCCCHHHHHHH
Confidence 34556667666 999999999999994
No 187
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.78 E-value=0.0001 Score=60.86 Aligned_cols=78 Identities=17% Similarity=0.202 Sum_probs=47.3
Q ss_pred eeCCc-EEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCccccc------C--------ccCCcHHHHHHHHHHhcch
Q psy5910 38 LEKSN-ILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEA------G--------YVGDDVESIIQKLLHECDY 99 (225)
Q Consensus 38 ~~~~~-vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~------~--------~~g~~~~~~~~~~~~~~~~ 99 (225)
.+++. ++|+||||||||+||..++..+ +.++++++....... + ....+....+..+ ..
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~----~~ 133 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIV----DE 133 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHH----HH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHH----HH
Confidence 34444 4599999999999999998765 566777776542110 0 0111222222221 11
Q ss_pred hhhhhCCCEEEEcchhhhcc
Q psy5910 100 DVELAEQSIIYIDEIDKISK 119 (225)
Q Consensus 100 ~~~~~~~~vl~iDEid~l~~ 119 (225)
.+....+.++++|.+..+.+
T Consensus 134 l~~~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 134 LVRSGVVDLIVVDSVAALVP 153 (356)
T ss_dssp HHHTSCCSEEEEECTTTCCC
T ss_pred HhhhcCCCeEEehHhhhhcC
Confidence 12234678999999998876
No 188
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.78 E-value=1.4e-05 Score=60.54 Aligned_cols=30 Identities=23% Similarity=0.324 Sum_probs=25.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVV 71 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~ 71 (225)
.|+|.|+|||||||+|+.+++.++.+++..
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 466999999999999999999988755543
No 189
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.77 E-value=1.4e-05 Score=61.51 Aligned_cols=29 Identities=14% Similarity=0.284 Sum_probs=25.2
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhCCCeE
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKIINVPII 69 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~ 69 (225)
..++|.|||||||||+++.+++.++.+++
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i 34 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQLAHI 34 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCCEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 46889999999999999999999986443
No 190
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.77 E-value=1.4e-05 Score=62.65 Aligned_cols=30 Identities=20% Similarity=0.225 Sum_probs=25.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVV 71 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~ 71 (225)
.++|.||||+||||+|+.+++.++.+.+..
T Consensus 31 ~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 31 RYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 577999999999999999999987755543
No 191
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.77 E-value=1.8e-05 Score=60.94 Aligned_cols=28 Identities=29% Similarity=0.574 Sum_probs=24.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeE
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPII 69 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~ 69 (225)
.+.|.|||||||||+++.+++.++.+++
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~g~~~~ 34 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEALQWHLL 34 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 4669999999999999999999886543
No 192
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.76 E-value=1.4e-05 Score=64.76 Aligned_cols=47 Identities=26% Similarity=0.400 Sum_probs=38.2
Q ss_pred eeeEeccc-ceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910 19 VGVYNHYK-RLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 19 ~~l~~~~~-~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~ 65 (225)
+.+.+.|. ....++++++..+.+.++ |+||+|+|||||++.|+..+.
T Consensus 57 ~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 57 ENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp EEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred EEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 44555663 456788899999988777 999999999999999998763
No 193
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.76 E-value=2.7e-05 Score=57.78 Aligned_cols=35 Identities=26% Similarity=0.535 Sum_probs=29.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcc
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSF 76 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~ 76 (225)
.+.|.|++||||||+++.++..+ |.+++.++...+
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 45699999999999999999988 888888776444
No 194
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.76 E-value=3.2e-05 Score=64.04 Aligned_cols=37 Identities=16% Similarity=0.438 Sum_probs=33.4
Q ss_pred eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 28 LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 28 ~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
...+++.++..+.+.++ |.||+|+|||||.+.|+...
T Consensus 41 ~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred eEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 45788999999998888 99999999999999999876
No 195
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.75 E-value=1.7e-05 Score=61.05 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=23.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCe
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPI 68 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~ 68 (225)
-|+|.||||+||+|.|+.|++.++.+.
T Consensus 31 iI~llGpPGsGKgTqa~~L~~~~g~~h 57 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQKFHFNH 57 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCce
Confidence 355899999999999999999997643
No 196
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.75 E-value=1.9e-05 Score=59.55 Aligned_cols=28 Identities=25% Similarity=0.511 Sum_probs=24.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeE
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPII 69 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~ 69 (225)
.+.|.|++||||||+++.+++.++.+++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 3679999999999999999999987654
No 197
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.75 E-value=1.8e-05 Score=59.89 Aligned_cols=25 Identities=36% Similarity=0.759 Sum_probs=21.3
Q ss_pred CcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910 41 SNIL-LVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 41 ~~vL-l~Gp~GtGKT~la~~ia~~~~ 65 (225)
+.++ |.||+|+||||+++.++..+.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3444 999999999999999999863
No 198
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.74 E-value=3e-05 Score=61.52 Aligned_cols=36 Identities=25% Similarity=0.626 Sum_probs=31.3
Q ss_pred eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 28 LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 28 ~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
...+++.++..+ +.++ |.||+|+|||||.+.++...
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 456788889898 7666 99999999999999999876
No 199
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.73 E-value=3.1e-05 Score=57.90 Aligned_cols=30 Identities=27% Similarity=0.327 Sum_probs=26.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCCeEEec
Q psy5910 43 ILLVGPTGCGKTLMVKTLAKII---NVPIIVVD 72 (225)
Q Consensus 43 vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~ 72 (225)
+.|.|++||||||+|+.+++.+ +.+++..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 6699999999999999999988 78777654
No 200
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.72 E-value=1.8e-05 Score=59.94 Aligned_cols=29 Identities=24% Similarity=0.525 Sum_probs=24.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVV 71 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~ 71 (225)
.+.|.|++||||||+++.+++ ++.+++..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~ 31 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDA 31 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEc
Confidence 467999999999999999999 77665544
No 201
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.71 E-value=3.7e-05 Score=60.11 Aligned_cols=34 Identities=26% Similarity=0.570 Sum_probs=29.6
Q ss_pred ecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910 31 LKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 31 ~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~ 65 (225)
+++.++..+. .++ |.||+|+|||||.+.++....
T Consensus 15 l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 15 RLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp EEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6777888888 777 999999999999999998763
No 202
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.70 E-value=2.6e-05 Score=60.13 Aligned_cols=30 Identities=30% Similarity=0.442 Sum_probs=25.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVV 71 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~ 71 (225)
.++|.|+||+||||+|+.+++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 367999999999999999999988655443
No 203
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.70 E-value=2.6e-05 Score=61.73 Aligned_cols=45 Identities=33% Similarity=0.461 Sum_probs=35.6
Q ss_pred eeEecccc---eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 20 GVYNHYKR---LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 20 ~l~~~~~~---~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
.+...|.. ...+++.++..+.+.++ |.||+|+|||||++.|+..+
T Consensus 22 ~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 22 DVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 44555543 24677888989888777 99999999999999999876
No 204
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.70 E-value=3.6e-05 Score=57.75 Aligned_cols=30 Identities=27% Similarity=0.454 Sum_probs=25.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCCeEEec
Q psy5910 43 ILLVGPTGCGKTLMVKTLAKII---NVPIIVVD 72 (225)
Q Consensus 43 vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~ 72 (225)
|.|.|++||||||+++.+++.+ +.+++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 5699999999999999999998 88876543
No 205
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.69 E-value=0.00016 Score=69.51 Aligned_cols=48 Identities=27% Similarity=0.537 Sum_probs=38.2
Q ss_pred eeeEeccc---ceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhCC
Q psy5910 19 VGVYNHYK---RLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIINV 66 (225)
Q Consensus 19 ~~l~~~~~---~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~~ 66 (225)
+.+.+.|. ....++++++..+++..+ ++||+||||||+++.+.+.+..
T Consensus 419 ~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~ 470 (1321)
T 4f4c_A 419 ENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDV 470 (1321)
T ss_dssp EEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCC
T ss_pred EEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcccccc
Confidence 45566663 235678899999988777 9999999999999999988743
No 206
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.69 E-value=2.9e-05 Score=61.36 Aligned_cols=35 Identities=40% Similarity=0.596 Sum_probs=28.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH---hCCCeEEeccCcc
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKI---INVPIIVVDATSF 76 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~---~~~~~~~~~~~~~ 76 (225)
-|+|.|+||+||||+|+.+++. .|.+++.++...+
T Consensus 6 lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~ 43 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI 43 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence 5679999999999999999998 6777775665544
No 207
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.69 E-value=1.6e-05 Score=59.43 Aligned_cols=32 Identities=16% Similarity=0.378 Sum_probs=25.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhC---CCeEEecc
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIIN---VPIIVVDA 73 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~---~~~~~~~~ 73 (225)
.|+|.|+|||||||+|+.+++.++ .++..++.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~ 37 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINY 37 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEEC
Confidence 467999999999999999999885 23555543
No 208
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.68 E-value=3.2e-05 Score=60.12 Aligned_cols=28 Identities=25% Similarity=0.521 Sum_probs=24.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeE
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPII 69 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~ 69 (225)
.+.|.|||||||||+++.|++.++.+++
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~lg~~~~ 38 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARALGARYL 38 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 5669999999999999999999986553
No 209
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.68 E-value=4e-05 Score=57.52 Aligned_cols=28 Identities=29% Similarity=0.497 Sum_probs=23.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhCCCe
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKIINVPI 68 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~ 68 (225)
+.|+|+||||+|||||++.+.+.....+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 4688999999999999999988765444
No 210
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.67 E-value=3.5e-05 Score=58.28 Aligned_cols=30 Identities=23% Similarity=0.511 Sum_probs=26.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVV 71 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~ 71 (225)
.+.|.|++||||||+++.+++.++.+++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 466999999999999999999998776653
No 211
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.67 E-value=2.7e-05 Score=63.43 Aligned_cols=32 Identities=41% Similarity=0.645 Sum_probs=27.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEecc
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDA 73 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~ 73 (225)
.++|.||+|||||++|+.+|+.++..++..+.
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l~~~iis~Ds 38 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADALPCELISVDS 38 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSCEEEEEECT
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEeccc
Confidence 57799999999999999999999877776654
No 212
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.67 E-value=0.00026 Score=59.95 Aligned_cols=34 Identities=35% Similarity=0.382 Sum_probs=26.8
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccC
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDAT 74 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~ 74 (225)
..+++.||+|+||||++..+|..+ +..+..+++.
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD 134 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 345599999999999999998777 6666666654
No 213
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.67 E-value=3.4e-05 Score=60.34 Aligned_cols=29 Identities=21% Similarity=0.491 Sum_probs=24.8
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhCCCeE
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKIINVPII 69 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~ 69 (225)
..+.|.||||+||||+++.|++.++....
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 35669999999999999999999877543
No 214
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.67 E-value=0.00035 Score=52.63 Aligned_cols=32 Identities=25% Similarity=0.182 Sum_probs=25.8
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEe
Q psy5910 40 KSNILLVGPTGCGKTLMVKTLAKII---NVPIIVV 71 (225)
Q Consensus 40 ~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~ 71 (225)
.+.+++++++|.||||+|-.++-.. |.++..+
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~v 62 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVV 62 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 4678899999999999998777555 6776666
No 215
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.66 E-value=2.8e-05 Score=58.95 Aligned_cols=28 Identities=29% Similarity=0.529 Sum_probs=23.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIV 70 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~ 70 (225)
.+.|.||+||||||+++.+++ +|.+++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 355999999999999999988 7776653
No 216
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.65 E-value=0.0012 Score=50.81 Aligned_cols=32 Identities=22% Similarity=0.281 Sum_probs=25.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEecc
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVVDA 73 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~ 73 (225)
++++.|+||||||+++-.+|..+ |..++.++.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 68899999999999988888766 666555444
No 217
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.65 E-value=0.00026 Score=57.32 Aligned_cols=33 Identities=33% Similarity=0.528 Sum_probs=25.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccC
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVVDAT 74 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~ 74 (225)
-++++||+|+||||++..+|..+ +..+..+++.
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D 141 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAAD 141 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred EEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccc
Confidence 35599999999999999999876 4555555543
No 218
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.62 E-value=3.6e-05 Score=58.12 Aligned_cols=30 Identities=23% Similarity=0.349 Sum_probs=25.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVV 71 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~ 71 (225)
.+.|+|++||||||+++.+++.+|.+++..
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid~ 43 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVNV 43 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEEC
Confidence 455999999999999999999888766543
No 219
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.62 E-value=2.9e-05 Score=56.74 Aligned_cols=32 Identities=28% Similarity=0.385 Sum_probs=25.9
Q ss_pred ccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 33 SKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 33 ~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
..++..+.+.++ |.||+|+|||||++.++..+
T Consensus 25 ~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 25 LLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ccccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 344555666555 99999999999999999987
No 220
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.61 E-value=0.00018 Score=70.81 Aligned_cols=81 Identities=16% Similarity=0.239 Sum_probs=50.3
Q ss_pred eeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccCc---cCCcH----------HHHHHHHHHhcchhh
Q psy5910 38 LEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAGY---VGDDV----------ESIIQKLLHECDYDV 101 (225)
Q Consensus 38 ~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~~---~g~~~----------~~~~~~~~~~~~~~~ 101 (225)
.+...++++||||||||+||.+++... |.+..+++.....+.-+ .|.+. ......+... ..
T Consensus 1079 ~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~---l~ 1155 (2050)
T 3cmu_A 1079 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDA---LA 1155 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHH---HH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHH---HH
Confidence 344578899999999999999887654 77888888765532111 11100 1011111111 11
Q ss_pred hhhCCCEEEEcchhhhcccc
Q psy5910 102 ELAEQSIIYIDEIDKISKKT 121 (225)
Q Consensus 102 ~~~~~~vl~iDEid~l~~~~ 121 (225)
+...+.+|+||++..+.+..
T Consensus 1156 ~~~~~dlvVIDsl~~L~~~~ 1175 (2050)
T 3cmu_A 1156 RSGAVDVIVVDSVAALTPKA 1175 (2050)
T ss_dssp HHTCCSEEEESCGGGCCCHH
T ss_pred HhCCCCEEEECCcccccccc
Confidence 23568999999999997654
No 221
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.61 E-value=4e-05 Score=60.29 Aligned_cols=28 Identities=36% Similarity=0.604 Sum_probs=24.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeE
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPII 69 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~ 69 (225)
.+.|.||+||||||+++.+++.+|..++
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 3559999999999999999999887543
No 222
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.61 E-value=0.00012 Score=64.47 Aligned_cols=33 Identities=21% Similarity=0.397 Sum_probs=25.3
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEec
Q psy5910 40 KSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVD 72 (225)
Q Consensus 40 ~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~ 72 (225)
.+.+++.||||||||+++.+++..+ +.++....
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~A 239 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCA 239 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 3467799999999999999988765 55555443
No 223
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.60 E-value=4.2e-05 Score=57.98 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=23.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVP 67 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~ 67 (225)
.|+|.|+||+||||+|+.+++.++..
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 46799999999999999999998763
No 224
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.60 E-value=3.8e-05 Score=57.94 Aligned_cols=31 Identities=23% Similarity=0.251 Sum_probs=25.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh-CCCeEEec
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKII-NVPIIVVD 72 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~-~~~~~~~~ 72 (225)
.|.|.|++||||||+++.+++.+ +.+++.+.
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 56799999999999999999988 46666543
No 225
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.60 E-value=0.00027 Score=58.47 Aligned_cols=74 Identities=16% Similarity=0.252 Sum_probs=45.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCccccc------Cc--------cCCcHHHHHHHHHHhcchhhhhh
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEA------GY--------VGDDVESIIQKLLHECDYDVELA 104 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~------~~--------~g~~~~~~~~~~~~~~~~~~~~~ 104 (225)
-++++|+||+|||++|..++... +.++++++.....+. ++ ...+...... ... ...+..
T Consensus 65 ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~-~~~---~l~~~~ 140 (356)
T 1u94_A 65 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALE-ICD---ALARSG 140 (356)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHH-HHH---HHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHH-HHH---HHHhcc
Confidence 46699999999999999888654 567888877432110 00 0011121111 111 112234
Q ss_pred CCCEEEEcchhhhcc
Q psy5910 105 EQSIIYIDEIDKISK 119 (225)
Q Consensus 105 ~~~vl~iDEid~l~~ 119 (225)
...+|+||.+..+..
T Consensus 141 ~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 141 AVDVIVVDSVAALTP 155 (356)
T ss_dssp CCSEEEEECGGGCCC
T ss_pred CCCEEEEcCHHHhcc
Confidence 678999999999875
No 226
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.60 E-value=3.7e-05 Score=57.94 Aligned_cols=28 Identities=25% Similarity=0.394 Sum_probs=23.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIV 70 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~ 70 (225)
.|.|.|++||||||+++.+++. |.+++.
T Consensus 10 ~I~i~G~~GsGKST~~~~La~~-g~~~id 37 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLRSW-GYPVLD 37 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT-TCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHC-CCEEEc
Confidence 4669999999999999999998 766554
No 227
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.59 E-value=4e-05 Score=57.03 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=21.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~ 65 (225)
-+.|+||||+|||||++.++....
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 456999999999999999998764
No 228
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.59 E-value=2.3e-05 Score=63.37 Aligned_cols=31 Identities=29% Similarity=0.462 Sum_probs=24.7
Q ss_pred cceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 34 KNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 34 ~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
.++..+.+.++ |+||+|+||||+++.++..+
T Consensus 93 l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 93 LQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CCCCSSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 44444555555 99999999999999999876
No 229
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.59 E-value=0.00022 Score=59.93 Aligned_cols=38 Identities=24% Similarity=0.307 Sum_probs=26.0
Q ss_pred eeCCc-EEEEcCCCCcHHHHHHHHHHHh---------CCCeEEeccCc
Q psy5910 38 LEKSN-ILLVGPTGCGKTLMVKTLAKII---------NVPIIVVDATS 75 (225)
Q Consensus 38 ~~~~~-vLl~Gp~GtGKT~la~~ia~~~---------~~~~~~~~~~~ 75 (225)
.+.+. ++|+||||||||+|++.++-.. +...++++...
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 34444 4499999999999999776433 23366676654
No 230
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.57 E-value=4.5e-05 Score=57.89 Aligned_cols=25 Identities=24% Similarity=0.573 Sum_probs=22.2
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~~ 65 (225)
..++|.||||+||||+++.+++.++
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCc
Confidence 3567999999999999999999874
No 231
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.57 E-value=8.4e-05 Score=61.49 Aligned_cols=24 Identities=29% Similarity=0.630 Sum_probs=21.1
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~ 64 (225)
+.+++.||+|+||||+.++++..+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 346699999999999999998876
No 232
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.57 E-value=4.6e-05 Score=57.97 Aligned_cols=28 Identities=29% Similarity=0.529 Sum_probs=22.6
Q ss_pred eeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910 38 LEKSNIL-LVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 38 ~~~~~vL-l~Gp~GtGKT~la~~ia~~~~ 65 (225)
.+.+.++ |.||+|||||||++.|+..+.
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4445555 999999999999999999874
No 233
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.57 E-value=0.00015 Score=59.17 Aligned_cols=34 Identities=21% Similarity=0.313 Sum_probs=26.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh---------CCCeEEeccCc
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKII---------NVPIIVVDATS 75 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~---------~~~~~~~~~~~ 75 (225)
-++++||||+|||++|..++... +.+.++++...
T Consensus 109 i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 109 MTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred EEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 45599999999999999998764 44567776654
No 234
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.56 E-value=2.9e-05 Score=60.13 Aligned_cols=32 Identities=34% Similarity=0.537 Sum_probs=18.4
Q ss_pred ccceeeeCCcEE-EEcCCCCcHHHHHHHHH-HHh
Q psy5910 33 SKNIYLEKSNIL-LVGPTGCGKTLMVKTLA-KII 64 (225)
Q Consensus 33 ~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia-~~~ 64 (225)
+.++..+.+.++ |.||+||||||+++.++ ..+
T Consensus 19 ~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 19 PGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ---CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 445556666666 99999999999999999 775
No 235
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.56 E-value=0.00035 Score=54.32 Aligned_cols=34 Identities=29% Similarity=0.396 Sum_probs=27.9
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccC
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKIINVPIIVVDAT 74 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~ 74 (225)
..+++.||+|+|||.++..++...+.+.+.+.+.
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 4588999999999999998888877776666553
No 236
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.55 E-value=2.6e-05 Score=59.26 Aligned_cols=27 Identities=22% Similarity=0.265 Sum_probs=23.0
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKIINVP 67 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~ 67 (225)
..|+|.|+|||||||+++.+++.++.+
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 356699999999999999999987543
No 237
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.54 E-value=1.3e-05 Score=65.88 Aligned_cols=29 Identities=34% Similarity=0.591 Sum_probs=25.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIV 70 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~ 70 (225)
+++|+||||+||||+++.+++.++.+|+.
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 58899999999999999999999877644
No 238
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.54 E-value=0.00032 Score=58.19 Aligned_cols=74 Identities=16% Similarity=0.262 Sum_probs=45.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCccccc------Cc--------cCCcHHHHHHHHHHhcchhhhhh
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEA------GY--------VGDDVESIIQKLLHECDYDVELA 104 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~------~~--------~g~~~~~~~~~~~~~~~~~~~~~ 104 (225)
-++++||||+|||++|..++... +.++++++....... ++ ...+....+..+ ...++..
T Consensus 76 li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l----~~l~~~~ 151 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIM----ELLVRSG 151 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHH----HHHHTTT
T ss_pred EEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHH----HHHHhcC
Confidence 45699999999999998887654 567787776542110 00 011222222211 1112234
Q ss_pred CCCEEEEcchhhhcc
Q psy5910 105 EQSIIYIDEIDKISK 119 (225)
Q Consensus 105 ~~~vl~iDEid~l~~ 119 (225)
...+|+||.+..+.+
T Consensus 152 ~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 152 AIDVVVVDSVAALTP 166 (366)
T ss_dssp CCSEEEEECTTTCCC
T ss_pred CCCEEEEeChHHhcc
Confidence 678999999999975
No 239
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.54 E-value=2.6e-05 Score=63.11 Aligned_cols=35 Identities=29% Similarity=0.474 Sum_probs=29.7
Q ss_pred eecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 30 LLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 30 ~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
.++++++..+++.++ |+||+|+|||||++.|+..+
T Consensus 115 vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 115 ALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 456667777777666 99999999999999999987
No 240
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.53 E-value=5.1e-05 Score=57.80 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=21.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~ 65 (225)
-+.|.||+|+|||||++.|+..+.
T Consensus 24 ~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 24 LVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 344999999999999999999875
No 241
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.53 E-value=5.3e-05 Score=59.55 Aligned_cols=36 Identities=31% Similarity=0.500 Sum_probs=30.4
Q ss_pred eecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910 30 LLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 30 ~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~ 65 (225)
.+++.++..+.+.++ |.||+|+|||||.+.++..+.
T Consensus 15 vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp TEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 456678888888776 999999999999999998763
No 242
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.51 E-value=0.00034 Score=57.31 Aligned_cols=121 Identities=10% Similarity=0.035 Sum_probs=69.2
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHh---CC-CeEEeccCcccccCccC-CcHHHHHHHHHHhcchhhhhhCCCEEEEcchh
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKII---NV-PIIVVDATSFTEAGYVG-DDVESIIQKLLHECDYDVELAEQSIIYIDEID 115 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~---~~-~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid 115 (225)
+.+||+||+|.||++.++.+++.+ +. ++..+. +.+ .++......+... .-....-|++|||++
T Consensus 19 ~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~----plf~~~kvvii~~~~ 86 (343)
T 1jr3_D 19 AAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS--------IDPNTDWNAIFSLCQAM----SLFASRQTLLLLLPE 86 (343)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE--------CCTTCCHHHHHHHHHHH----HHCCSCEEEEEECCS
T ss_pred cEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE--------ecCCCCHHHHHHHhcCc----CCccCCeEEEEECCC
Confidence 367799999999999999998865 21 211111 111 2333333222111 112356799999999
Q ss_pred h-hcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccc
Q psy5910 116 K-ISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQE 194 (225)
Q Consensus 116 ~-l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~ 194 (225)
. +... .+++|++.+++.. .+ .++++.+++.-- . .....+.+++.+|. ..
T Consensus 87 ~kl~~~-------------~~~aLl~~le~p~-------------~~-~~~il~~~~~~~-~-~~~~k~~~~i~sr~-~~ 136 (343)
T 1jr3_D 87 NGPNAA-------------INEQLLTLTGLLH-------------DD-LLLIVRGNKLSK-A-QENAAWFTALANRS-VQ 136 (343)
T ss_dssp SCCCTT-------------HHHHHHHHHTTCB-------------TT-EEEEEEESCCCT-T-TTTSHHHHHHTTTC-EE
T ss_pred CCCChH-------------HHHHHHHHHhcCC-------------CC-eEEEEEcCCCCh-h-hHhhHHHHHHHhCc-eE
Confidence 8 7655 7899999998521 11 144445543200 0 00135788888875 23
Q ss_pred ccccccccc
Q psy5910 195 TNFLEKLNN 203 (225)
Q Consensus 195 i~~~~~~~~ 203 (225)
+.|..++.+
T Consensus 137 ~~~~~l~~~ 145 (343)
T 1jr3_D 137 VTCQTPEQA 145 (343)
T ss_dssp EEECCCCTT
T ss_pred EEeeCCCHH
Confidence 566555544
No 243
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.51 E-value=7e-05 Score=55.93 Aligned_cols=33 Identities=24% Similarity=0.439 Sum_probs=24.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCc
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDATS 75 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~ 75 (225)
-+.|.||+|+||||+++.++...+. .+.++...
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g-~~~i~~d~ 36 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN-SAYIEGDI 36 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS-EEEEEHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC-eEEEcccc
Confidence 3569999999999999999986543 24454433
No 244
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.51 E-value=5.2e-05 Score=57.27 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=20.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~ 64 (225)
-+.|.||||+||||+++.++..+
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 45599999999999999999876
No 245
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.50 E-value=5.8e-05 Score=57.39 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=21.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhC
Q psy5910 43 ILLVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 43 vLl~Gp~GtGKT~la~~ia~~~~ 65 (225)
+.|.||+|+||||+++.++..++
T Consensus 9 i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 9 IGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 44999999999999999999876
No 246
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.49 E-value=6.9e-05 Score=55.85 Aligned_cols=35 Identities=29% Similarity=0.429 Sum_probs=27.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcc
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSF 76 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~ 76 (225)
.++|.|+||+||||+++.++..+ +.++..++...+
T Consensus 15 ~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 15 VVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 46699999999999999999887 344555655433
No 247
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.49 E-value=5.8e-05 Score=57.51 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=21.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCC
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINV 66 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~ 66 (225)
-+.|.||+|+||||+++.++..++.
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred EEEEECcCCCCHHHHHHHHHhhCCC
Confidence 3559999999999999999988743
No 248
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.49 E-value=8.6e-05 Score=58.28 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=23.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVP 67 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~ 67 (225)
.|.|.|++||||||+|+.+++.++.+
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~lg~~ 49 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLLGQN 49 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhh
Confidence 35599999999999999999998865
No 249
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.48 E-value=9.9e-05 Score=55.88 Aligned_cols=31 Identities=19% Similarity=0.386 Sum_probs=24.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCCeEEecc
Q psy5910 43 ILLVGPTGCGKTLMVKTLAKII---NVPIIVVDA 73 (225)
Q Consensus 43 vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~ 73 (225)
+.+.|++|+||||+++.++..+ +.++...+.
T Consensus 25 i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~ 58 (201)
T 1rz3_A 25 LGIDGLSRSGKTTLANQLSQTLREQGISVCVFHM 58 (201)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhcCCeEEEecc
Confidence 4499999999999999999876 555555433
No 250
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.48 E-value=4.7e-05 Score=62.26 Aligned_cols=32 Identities=31% Similarity=0.469 Sum_probs=26.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEecc
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDA 73 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~ 73 (225)
.++|.||+|+|||+|+..||+.++.+++..+.
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds 73 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHFPLEVINSDK 73 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTSCEEEEECCS
T ss_pred eEEEECCCCCCHHHHHHHHHHHCCCcEEcccc
Confidence 46699999999999999999998876655444
No 251
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.48 E-value=7.2e-05 Score=56.60 Aligned_cols=25 Identities=32% Similarity=0.623 Sum_probs=21.9
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~~ 65 (225)
..+.|+||+|+|||||++.++..+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4567999999999999999998764
No 252
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.47 E-value=3.6e-05 Score=58.56 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=22.0
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~~ 65 (225)
..|+|.|+|||||||+++.+++.++
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3567999999999999999999874
No 253
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.47 E-value=0.00026 Score=58.27 Aligned_cols=38 Identities=29% Similarity=0.336 Sum_probs=27.9
Q ss_pred eeCCcE-EEEcCCCCcHHHHHHHHHHHh---------CCCeEEeccCc
Q psy5910 38 LEKSNI-LLVGPTGCGKTLMVKTLAKII---------NVPIIVVDATS 75 (225)
Q Consensus 38 ~~~~~v-Ll~Gp~GtGKT~la~~ia~~~---------~~~~~~~~~~~ 75 (225)
.+.+.+ +++||||+|||++|..++... +...++++...
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 334444 599999999999999998763 44566776654
No 254
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.45 E-value=5.5e-05 Score=57.43 Aligned_cols=28 Identities=39% Similarity=0.512 Sum_probs=22.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh-CCCeE
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKII-NVPII 69 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~-~~~~~ 69 (225)
-+.+.|+||+||||+++.+++.+ +..++
T Consensus 23 ~i~i~G~~GsGKSTl~~~L~~~~~~~~~i 51 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAKNLQKHLPNCSVI 51 (207)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSTTEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcEEE
Confidence 34599999999999999999876 44433
No 255
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.45 E-value=8e-05 Score=55.64 Aligned_cols=24 Identities=33% Similarity=0.603 Sum_probs=21.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~ 65 (225)
-+.|.||+|+||||+++.++..+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 456999999999999999998764
No 256
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.45 E-value=8.1e-05 Score=56.94 Aligned_cols=29 Identities=24% Similarity=0.482 Sum_probs=24.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVV 71 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~ 71 (225)
.|.|.|++||||||+++.+++ +|.+++..
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 466999999999999999998 77665543
No 257
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.45 E-value=0.00012 Score=70.33 Aligned_cols=58 Identities=31% Similarity=0.547 Sum_probs=42.2
Q ss_pred eeeEecccc---eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhCC--CeEEeccCcc
Q psy5910 19 VGVYNHYKR---LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIINV--PIIVVDATSF 76 (225)
Q Consensus 19 ~~l~~~~~~---~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~~--~~~~~~~~~~ 76 (225)
+.+.+.|.. .+.++++++..+++..+ ++||+|+||||+++.+.+.+.. --+.+++.++
T Consensus 1080 ~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di 1143 (1321)
T 4f4c_A 1080 KNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEI 1143 (1321)
T ss_dssp EEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEET
T ss_pred EEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEh
Confidence 455666632 24678899999988777 9999999999999999987732 2455555433
No 258
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.45 E-value=9.5e-05 Score=57.40 Aligned_cols=30 Identities=27% Similarity=0.408 Sum_probs=25.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKIINVPIIV 70 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~ 70 (225)
..+.|.|++||||||+++.+++.+|.+++.
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 356699999999999999999998875543
No 259
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=97.45 E-value=8.8e-05 Score=56.69 Aligned_cols=29 Identities=31% Similarity=0.494 Sum_probs=25.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIV 70 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~ 70 (225)
.+.|.|++||||||+++.+++.++.+++.
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~g~~~~~ 33 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASELSMIYVD 33 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 57799999999999999999998876544
No 260
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.44 E-value=0.00038 Score=60.74 Aligned_cols=36 Identities=28% Similarity=0.521 Sum_probs=27.6
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHh-------CCCeEEeccCc
Q psy5910 40 KSNILLVGPTGCGKTLMVKTLAKII-------NVPIIVVDATS 75 (225)
Q Consensus 40 ~~~vLl~Gp~GtGKT~la~~ia~~~-------~~~~~~~~~~~ 75 (225)
.+|+|+.|.+|+|||++++.+...+ ...++.+++..
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 3699999999999999999876544 13477777753
No 261
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.44 E-value=0.00027 Score=57.83 Aligned_cols=68 Identities=24% Similarity=0.362 Sum_probs=40.9
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhCC--CeEEeccCcccc-------cCcc---CCcHHHHHHHHHHhcchhhhhhCCCE
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKIINV--PIIVVDATSFTE-------AGYV---GDDVESIIQKLLHECDYDVELAEQSI 108 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~~~--~~~~~~~~~~~~-------~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~v 108 (225)
..+++.||+|+||||++++++..+.. ..+.++...... .++. |..... .+..+ -...|.+
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~----~la~a----L~~~p~i 243 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSAD----CLKSC----LRMRPDR 243 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHH----HHHHH----TTSCCSE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHH----HHHHH----hhhCCCE
Confidence 35669999999999999999988742 344444322100 0122 222221 22221 1347899
Q ss_pred EEEcchhh
Q psy5910 109 IYIDEIDK 116 (225)
Q Consensus 109 l~iDEid~ 116 (225)
+++||+..
T Consensus 244 lildE~~~ 251 (330)
T 2pt7_A 244 IILGELRS 251 (330)
T ss_dssp EEECCCCS
T ss_pred EEEcCCCh
Confidence 99999765
No 262
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.43 E-value=0.0001 Score=54.63 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=25.7
Q ss_pred ccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910 33 SKNIYLEKSNILLVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 33 ~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~ 65 (225)
+..+...++-.+|+||+|+|||+++++|+-.++
T Consensus 19 ~~~~~~~~g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 19 KVVIPFSKGFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp CEEEECCSSEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEecCCCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 334445555555999999999999999998775
No 263
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=97.43 E-value=0.00012 Score=55.66 Aligned_cols=29 Identities=31% Similarity=0.426 Sum_probs=26.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIV 70 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~ 70 (225)
-|.|.|++|||||++++.+|+.+|.+++-
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 45599999999999999999999998873
No 264
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.43 E-value=5.2e-05 Score=62.73 Aligned_cols=31 Identities=29% Similarity=0.462 Sum_probs=24.6
Q ss_pred cceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 34 KNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 34 ~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
+++..+.+.++ |+||+|+||||+++.++..+
T Consensus 150 l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 150 LQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp CCCCSSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceecCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 44444555555 99999999999999999876
No 265
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.42 E-value=0.00011 Score=59.44 Aligned_cols=32 Identities=47% Similarity=0.737 Sum_probs=26.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEecc
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDA 73 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~ 73 (225)
-+++.||+|+|||+||..+|+.++..++..+.
T Consensus 12 ~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred EEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 45699999999999999999998766655443
No 266
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.42 E-value=9.2e-05 Score=57.03 Aligned_cols=28 Identities=21% Similarity=0.540 Sum_probs=22.1
Q ss_pred eeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910 38 LEKSNIL-LVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 38 ~~~~~vL-l~Gp~GtGKT~la~~ia~~~~ 65 (225)
.+.+.++ |.||+|+|||||++.++....
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 3444455 999999999999999998875
No 267
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.40 E-value=0.00012 Score=56.19 Aligned_cols=27 Identities=37% Similarity=0.600 Sum_probs=21.9
Q ss_pred eeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 38 LEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 38 ~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
.+.+.++ |+||+|||||||++.++...
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3444555 99999999999999999854
No 268
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.39 E-value=0.0001 Score=60.45 Aligned_cols=31 Identities=45% Similarity=0.539 Sum_probs=25.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEec
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVD 72 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~ 72 (225)
.++|.||+|+|||++|+.|++.++..++..+
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~~~iis~D 39 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFNGEIISGD 39 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTEEEEECC
T ss_pred eEEEECCCcCcHHHHHHHHHHHcCCceeccc
Confidence 4669999999999999999999885544433
No 269
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.37 E-value=8.9e-05 Score=56.02 Aligned_cols=29 Identities=21% Similarity=0.279 Sum_probs=24.6
Q ss_pred eeeCCcEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910 37 YLEKSNILLVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 37 ~~~~~~vLl~Gp~GtGKT~la~~ia~~~~ 65 (225)
......++|.||||+|||++|..+++..+
T Consensus 31 ~~~g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 31 DIYGLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp EETTEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred EECCEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 34456788999999999999999998765
No 270
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.37 E-value=0.0021 Score=49.66 Aligned_cols=33 Identities=30% Similarity=0.412 Sum_probs=24.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH----hCCCeEEeccC
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKI----INVPIIVVDAT 74 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~----~~~~~~~~~~~ 74 (225)
-+++.|+||+|||++|..++.. .+.++++++..
T Consensus 32 l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 4559999999999999876532 26677776553
No 271
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.36 E-value=9.9e-05 Score=59.31 Aligned_cols=36 Identities=31% Similarity=0.516 Sum_probs=31.2
Q ss_pred EeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 29 FLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 29 ~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
..+++.++..+.+.++ |.||+|+|||||.+.|+..+
T Consensus 52 ~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4567788888888777 99999999999999999876
No 272
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.36 E-value=0.00016 Score=54.62 Aligned_cols=25 Identities=20% Similarity=0.477 Sum_probs=21.6
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~~ 65 (225)
..+.|.||+|+|||||++.|++...
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3456999999999999999998765
No 273
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.36 E-value=9.6e-05 Score=59.80 Aligned_cols=30 Identities=40% Similarity=0.461 Sum_probs=24.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVV 71 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~ 71 (225)
-+++.||+|+|||+||..+|+.++..++..
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~~~iis~ 34 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLNGEVISG 34 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTTEEEEEC
T ss_pred EEEEECCCcCCHHHHHHHHHHhCccceeec
Confidence 456999999999999999999887654443
No 274
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.35 E-value=0.00015 Score=55.17 Aligned_cols=35 Identities=23% Similarity=0.347 Sum_probs=28.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhC----CCeEEeccCcc
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIIN----VPIIVVDATSF 76 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~----~~~~~~~~~~~ 76 (225)
.++|.|++|+||||+++.+++.++ .+++.++...+
T Consensus 27 ~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 27 TIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 456999999999999999998764 55777775444
No 275
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.29 E-value=0.00018 Score=63.42 Aligned_cols=45 Identities=20% Similarity=0.348 Sum_probs=36.4
Q ss_pred eeEecccc--eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 20 GVYNHYKR--LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 20 ~l~~~~~~--~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
.+...|.. ...+++.++..+++.++ ++||+|+|||||++.++..+
T Consensus 346 ~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 346 DVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44555542 45678889999988777 99999999999999999876
No 276
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.28 E-value=0.00014 Score=58.49 Aligned_cols=33 Identities=18% Similarity=0.252 Sum_probs=24.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCc
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDATS 75 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~ 75 (225)
-++|.|+||+||||+|+.+++.+ ..+..++...
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~~-~~~~~i~~D~ 36 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAKN-PGFYNINRDD 36 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS-TTEEEECHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhC-CCcEEecccH
Confidence 46799999999999999999864 1234444433
No 277
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.27 E-value=0.00015 Score=58.04 Aligned_cols=28 Identities=29% Similarity=0.367 Sum_probs=22.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIV 70 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~ 70 (225)
.|.|.|++||||||+|+.++ .+|.+++.
T Consensus 77 iI~I~G~~GSGKSTva~~La-~lg~~~id 104 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK-NLGAYIID 104 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH-HHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHH-HCCCcEEe
Confidence 35699999999999999999 46765544
No 278
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.27 E-value=0.0011 Score=56.44 Aligned_cols=37 Identities=19% Similarity=0.393 Sum_probs=27.3
Q ss_pred eeCCc-EEEEcCCCCcHHHHHHHHHHHh----CCCeEEeccC
Q psy5910 38 LEKSN-ILLVGPTGCGKTLMVKTLAKII----NVPIIVVDAT 74 (225)
Q Consensus 38 ~~~~~-vLl~Gp~GtGKT~la~~ia~~~----~~~~~~~~~~ 74 (225)
.+++. +++.|+||+|||+++..++... +.++.+++..
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 34444 5599999999999999887654 5577777654
No 279
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.25 E-value=0.00027 Score=58.26 Aligned_cols=40 Identities=30% Similarity=0.431 Sum_probs=29.5
Q ss_pred eeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC---------CCeEEeccCc
Q psy5910 36 IYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN---------VPIIVVDATS 75 (225)
Q Consensus 36 ~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~---------~~~~~~~~~~ 75 (225)
...+.+.+. |+||||+|||+|++.++.... ..+++++...
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 345555555 999999999999999998762 3446666643
No 280
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.23 E-value=0.00022 Score=66.01 Aligned_cols=47 Identities=23% Similarity=0.562 Sum_probs=38.9
Q ss_pred hheeeeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHH
Q psy5910 16 IVSVGVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAK 62 (225)
Q Consensus 16 ~l~~~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~ 62 (225)
.+...+...|+....+++.++....+.++ |+||+|+|||||.+.|+.
T Consensus 436 L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 436 LCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 34445666777777888999999998777 999999999999999984
No 281
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.23 E-value=0.00022 Score=62.23 Aligned_cols=49 Identities=27% Similarity=0.437 Sum_probs=34.6
Q ss_pred hhheeeeEecccce-EeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 15 KIVSVGVYNHYKRL-FLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 15 ~~l~~~l~~~~~~~-~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
..|.+.+...|... ....+.+ ....+.++ |+||+|+|||||++.|+..+
T Consensus 21 ~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp ---CCCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred hhHhcCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45556666666543 3566666 56666666 99999999999999999765
No 282
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.22 E-value=0.00019 Score=58.26 Aligned_cols=27 Identities=19% Similarity=0.399 Sum_probs=22.4
Q ss_pred eCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910 39 EKSNIL-LVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 39 ~~~~vL-l~Gp~GtGKT~la~~ia~~~~ 65 (225)
+.+.++ |.||+|+|||||++.|+..+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 334455 999999999999999999873
No 283
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.22 E-value=0.00018 Score=60.18 Aligned_cols=30 Identities=33% Similarity=0.472 Sum_probs=25.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVV 71 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~ 71 (225)
-+++.||+|+|||+||..+++.++..++..
T Consensus 4 ~i~i~GptgsGKttla~~La~~~~~~iis~ 33 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKFNGEVINS 33 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHTEEEEEC
T ss_pred EEEEECcchhhHHHHHHHHHHHCCCeEeec
Confidence 456999999999999999999987655443
No 284
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.21 E-value=0.00011 Score=62.20 Aligned_cols=33 Identities=18% Similarity=0.330 Sum_probs=26.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcc
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSF 76 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~ 76 (225)
-|++.|+||+||||+|+.+++.++. ..++...+
T Consensus 260 lIil~G~pGSGKSTla~~L~~~~~~--~~i~~D~~ 292 (416)
T 3zvl_A 260 VVVAVGFPGAGKSTFIQEHLVSAGY--VHVNRDTL 292 (416)
T ss_dssp EEEEESCTTSSHHHHHHHHTGGGTC--EECCGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCc--EEEccchH
Confidence 4559999999999999999998764 45555444
No 285
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.21 E-value=0.0015 Score=49.06 Aligned_cols=32 Identities=16% Similarity=0.392 Sum_probs=25.2
Q ss_pred EEEEcCCCCcHH-HHHHHHHHHh--CCCeEEeccC
Q psy5910 43 ILLVGPTGCGKT-LMVKTLAKII--NVPIIVVDAT 74 (225)
Q Consensus 43 vLl~Gp~GtGKT-~la~~ia~~~--~~~~~~~~~~ 74 (225)
.+++||.|+||| .|.+++.+.. +..++.+++.
T Consensus 23 ~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 23 QVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 349999999999 7888888765 6677777654
No 286
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.21 E-value=0.00019 Score=63.23 Aligned_cols=46 Identities=22% Similarity=0.415 Sum_probs=36.7
Q ss_pred eeEecccc--eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910 20 GVYNHYKR--LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 20 ~l~~~~~~--~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~ 65 (225)
.+...|.. ...+++.++..+++.++ ++||+|+|||||++.++..+.
T Consensus 346 ~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 346 NVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp EEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred EEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC
Confidence 44555542 45678888999888777 999999999999999998773
No 287
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.19 E-value=0.00051 Score=53.13 Aligned_cols=33 Identities=30% Similarity=0.331 Sum_probs=24.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccC
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVVDAT 74 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~ 74 (225)
-++++||||+|||++|..++... +.+.++++..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 45699999999999988776543 5566666553
No 288
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.18 E-value=0.00012 Score=58.87 Aligned_cols=43 Identities=14% Similarity=0.210 Sum_probs=30.6
Q ss_pred ecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh----CCCeEEecc
Q psy5910 31 LKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII----NVPIIVVDA 73 (225)
Q Consensus 31 ~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~----~~~~~~~~~ 73 (225)
+++.....+.+.++ |.||||+|||||++.++..+ |.++..++.
T Consensus 25 Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp HHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 44444556666555 99999999999999998766 335655544
No 289
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=97.18 E-value=0.00027 Score=54.66 Aligned_cols=30 Identities=23% Similarity=0.507 Sum_probs=25.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVV 71 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~ 71 (225)
.+-|.||||+||||+|+.|++.++.+.+..
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 344899999999999999999998876543
No 290
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.17 E-value=0.00018 Score=61.17 Aligned_cols=39 Identities=13% Similarity=0.339 Sum_probs=30.8
Q ss_pred eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhCCC
Q psy5910 28 LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIINVP 67 (225)
Q Consensus 28 ~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~~~ 67 (225)
.+.+++. +...++..+ |.||+|||||||++.|++.....
T Consensus 145 ~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 145 VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 3455666 667776665 99999999999999999988544
No 291
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.17 E-value=0.00025 Score=53.25 Aligned_cols=23 Identities=30% Similarity=0.808 Sum_probs=20.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~ 64 (225)
.+.|+||+|+||||+++.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 46699999999999999999876
No 292
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.17 E-value=0.00025 Score=60.86 Aligned_cols=32 Identities=28% Similarity=0.427 Sum_probs=25.8
Q ss_pred ccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 33 SKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 33 ~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
++++....+.++ |+||+|+||||+++.|+..+
T Consensus 285 ~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 285 PLNVEGKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceeeccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 455555556555 99999999999999999876
No 293
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.16 E-value=0.00012 Score=55.70 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhC
Q psy5910 43 ILLVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 43 vLl~Gp~GtGKT~la~~ia~~~~ 65 (225)
+.|.|++|+||||+++.+++.++
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 56999999999999999999884
No 294
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.16 E-value=0.00023 Score=56.29 Aligned_cols=23 Identities=39% Similarity=0.719 Sum_probs=20.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~ 64 (225)
.++++||+|+||||++++++..+
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHhC
Confidence 45599999999999999999876
No 295
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.15 E-value=0.00021 Score=58.94 Aligned_cols=39 Identities=8% Similarity=0.163 Sum_probs=30.5
Q ss_pred eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhCCC
Q psy5910 28 LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIINVP 67 (225)
Q Consensus 28 ~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~~~ 67 (225)
.+.+++. +...++.++ |.||+|+|||||.+.|++.....
T Consensus 59 ~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 59 VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 3445555 666776665 99999999999999999998654
No 296
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=97.11 E-value=0.00042 Score=61.29 Aligned_cols=35 Identities=26% Similarity=0.535 Sum_probs=30.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcc
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSF 76 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~ 76 (225)
.|+|.|.||+||||+|+.+++.+ +.+++.++...+
T Consensus 54 lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 54 TVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 46799999999999999999999 889988876544
No 297
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=97.11 E-value=0.00033 Score=54.01 Aligned_cols=29 Identities=21% Similarity=0.247 Sum_probs=25.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIV 70 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~ 70 (225)
-|.+.|++|||||++++.+|+.++.+++.
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 34599999999999999999999987744
No 298
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.11 E-value=0.00031 Score=54.35 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=21.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~ 65 (225)
-+.|.||||+||||+++.+++.++
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 355999999999999999999986
No 299
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.11 E-value=0.00066 Score=54.69 Aligned_cols=33 Identities=36% Similarity=0.437 Sum_probs=26.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccC
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVVDAT 74 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~ 74 (225)
.+++.|++|+||||++..+|..+ +..+..+++.
T Consensus 100 vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp EEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 45589999999999999998776 5666666654
No 300
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.10 E-value=0.00018 Score=63.43 Aligned_cols=47 Identities=21% Similarity=0.403 Sum_probs=37.1
Q ss_pred eeeEeccc--ceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910 19 VGVYNHYK--RLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 19 ~~l~~~~~--~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~ 65 (225)
+.+...|. ....+++.++..+++.++ ++||+|+||||+++.++..+.
T Consensus 345 ~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~ 394 (587)
T 3qf4_A 345 ENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID 394 (587)
T ss_dssp EEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSC
T ss_pred EEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 34455552 345678888999988777 999999999999999998774
No 301
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.08 E-value=0.00042 Score=61.81 Aligned_cols=30 Identities=23% Similarity=0.528 Sum_probs=19.4
Q ss_pred cEEEEcCCCCcHHHH-HHHHHHHh--CCCeEEe
Q psy5910 42 NILLVGPTGCGKTLM-VKTLAKII--NVPIIVV 71 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~l-a~~ia~~~--~~~~~~~ 71 (225)
-.|+.||||||||++ +..|+..+ +.++...
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~ 239 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCC 239 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 467999999999965 44444443 4444443
No 302
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.07 E-value=0.0013 Score=56.73 Aligned_cols=35 Identities=26% Similarity=0.531 Sum_probs=26.1
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHh-------CCCeEEeccC
Q psy5910 40 KSNILLVGPTGCGKTLMVKTLAKII-------NVPIIVVDAT 74 (225)
Q Consensus 40 ~~~vLl~Gp~GtGKT~la~~ia~~~-------~~~~~~~~~~ 74 (225)
.+|+|+.|++|+|||++++.+...+ ...++.+++.
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK 208 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPK 208 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCc
Confidence 3699999999999999999886532 1236666654
No 303
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.06 E-value=0.00062 Score=57.73 Aligned_cols=35 Identities=37% Similarity=0.516 Sum_probs=28.1
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCc
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATS 75 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~ 75 (225)
..++++|++|+||||++..+|..+ |..+..+++..
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~ 137 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT 137 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 467799999999999999998876 46677776653
No 304
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.05 E-value=0.0012 Score=56.10 Aligned_cols=33 Identities=18% Similarity=0.179 Sum_probs=25.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh----CCCeEEeccC
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKII----NVPIIVVDAT 74 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~----~~~~~~~~~~ 74 (225)
-+++.|+||+|||++|..++... +.++.+++..
T Consensus 202 l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 202 LNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 35599999999999998887643 5577777654
No 305
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.04 E-value=0.00039 Score=56.24 Aligned_cols=25 Identities=20% Similarity=0.511 Sum_probs=21.7
Q ss_pred CcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910 41 SNIL-LVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 41 ~~vL-l~Gp~GtGKT~la~~ia~~~~ 65 (225)
+.++ |.||+|+||||+++.|+..++
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3455 999999999999999999875
No 306
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.04 E-value=0.0004 Score=56.16 Aligned_cols=23 Identities=35% Similarity=0.595 Sum_probs=20.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~ 64 (225)
-+.++||+||||||+++.++..+
T Consensus 104 vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 45599999999999999999877
No 307
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.04 E-value=0.00041 Score=55.69 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhC
Q psy5910 43 ILLVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 43 vLl~Gp~GtGKT~la~~ia~~~~ 65 (225)
+.+.||+||||||+++.|+..++
T Consensus 34 i~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 34 IFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 44999999999999999998875
No 308
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.03 E-value=0.00049 Score=59.04 Aligned_cols=35 Identities=14% Similarity=0.268 Sum_probs=28.5
Q ss_pred eecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910 30 LLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 30 ~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~ 65 (225)
.+++.++..+. .++ |.||+|||||||.++|+..+.
T Consensus 19 ~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~ 54 (483)
T 3euj_A 19 GFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI 54 (483)
T ss_dssp TEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC
Confidence 34566677777 666 999999999999999998873
No 309
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.03 E-value=0.0002 Score=63.11 Aligned_cols=47 Identities=26% Similarity=0.449 Sum_probs=37.0
Q ss_pred eeeEecccc--eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910 19 VGVYNHYKR--LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 19 ~~l~~~~~~--~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~ 65 (225)
+.+...|.. ...+++.++..+++.++ ++||+|+||||+++.++..+.
T Consensus 343 ~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~ 392 (578)
T 4a82_A 343 DHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD 392 (578)
T ss_dssp EEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred EEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 344555542 34678889999988777 999999999999999998763
No 310
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.03 E-value=0.0004 Score=61.36 Aligned_cols=47 Identities=21% Similarity=0.449 Sum_probs=37.3
Q ss_pred eeeEecccc---eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910 19 VGVYNHYKR---LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 19 ~~l~~~~~~---~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~ 65 (225)
+.+...|.. ...+++.++..+++.++ ++||+|+|||||++.++..+.
T Consensus 345 ~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~ 395 (595)
T 2yl4_A 345 KNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYD 395 (595)
T ss_dssp EEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSC
T ss_pred EEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 345555542 35788899999988777 999999999999999998763
No 311
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.03 E-value=0.00023 Score=57.19 Aligned_cols=34 Identities=24% Similarity=0.552 Sum_probs=23.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhC---CCeEEeccCcc
Q psy5910 43 ILLVGPTGCGKTLMVKTLAKIIN---VPIIVVDATSF 76 (225)
Q Consensus 43 vLl~Gp~GtGKT~la~~ia~~~~---~~~~~~~~~~~ 76 (225)
|.|.||+|+||||+|+.+++.++ ..+..++..++
T Consensus 8 IgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 8 ISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp EEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 44999999999999999999775 44555665554
No 312
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=97.02 E-value=0.00051 Score=50.64 Aligned_cols=28 Identities=21% Similarity=0.423 Sum_probs=23.7
Q ss_pred eeeeCCcEEEEcCCCCcHHHHHHHHHHH
Q psy5910 36 IYLEKSNILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 36 ~~~~~~~vLl~Gp~GtGKT~la~~ia~~ 63 (225)
+.....++||.|+||+||||+|..+.+.
T Consensus 12 v~v~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 12 LVIDKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEETTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEECCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 3355668999999999999999998875
No 313
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.02 E-value=0.00041 Score=56.47 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhC
Q psy5910 43 ILLVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 43 vLl~Gp~GtGKT~la~~ia~~~~ 65 (225)
+-|.||+||||||+++.++..++
T Consensus 95 igI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 33999999999999999999875
No 314
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=97.01 E-value=0.00041 Score=51.59 Aligned_cols=32 Identities=19% Similarity=0.315 Sum_probs=26.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCc
Q psy5910 43 ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATS 75 (225)
Q Consensus 43 vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~ 75 (225)
+|++|++|+|||++|..++.. +.+.+++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 679999999999999999977 77777776543
No 315
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.01 E-value=0.00023 Score=62.88 Aligned_cols=47 Identities=32% Similarity=0.530 Sum_probs=36.9
Q ss_pred eeeEeccc-ceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910 19 VGVYNHYK-RLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 19 ~~l~~~~~-~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~ 65 (225)
+.+...|. ....+++.++..+++.++ ++||+|+||||+++.++..+.
T Consensus 358 ~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~ 406 (598)
T 3qf4_B 358 KNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD 406 (598)
T ss_dssp EEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred EEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence 34455553 234678888989888777 999999999999999998774
No 316
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.99 E-value=0.00052 Score=54.54 Aligned_cols=26 Identities=35% Similarity=0.445 Sum_probs=20.9
Q ss_pred eCC-cEEEEcCCCCcHHHHHHHHHHHh
Q psy5910 39 EKS-NILLVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 39 ~~~-~vLl~Gp~GtGKT~la~~ia~~~ 64 (225)
+.+ -++|+||||+|||||++.++..+
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 344 45599999999999999988654
No 317
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.94 E-value=0.00037 Score=53.14 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=19.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~ 63 (225)
-+.|.||+|+|||||++.++..
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3449999999999999999875
No 318
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.93 E-value=0.00057 Score=55.84 Aligned_cols=25 Identities=36% Similarity=0.599 Sum_probs=21.3
Q ss_pred CCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 40 KSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 40 ~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
++.++ |+||+|+||||+++.++..+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34444 99999999999999999877
No 319
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.93 E-value=0.0035 Score=61.23 Aligned_cols=82 Identities=18% Similarity=0.265 Sum_probs=50.7
Q ss_pred eeCC-cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccCc--------------cCCcHHHHHHHHHHhcch
Q psy5910 38 LEKS-NILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAGY--------------VGDDVESIIQKLLHECDY 99 (225)
Q Consensus 38 ~~~~-~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~~--------------~g~~~~~~~~~~~~~~~~ 99 (225)
.|++ -++++||+||||||||-.+..+. |..+.+++...-.+..| .....+..+..+ ..
T Consensus 1428 ~prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~----~~ 1503 (1706)
T 3cmw_A 1428 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEIC----DA 1503 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHH----HH
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHH----HH
Confidence 3443 45599999999999987665433 67788887742211111 011112223222 23
Q ss_pred hhhhhCCCEEEEcchhhhcccccc
Q psy5910 100 DVELAEQSIIYIDEIDKISKKTDV 123 (225)
Q Consensus 100 ~~~~~~~~vl~iDEid~l~~~~~~ 123 (225)
.++.....+|++|.+..+.+....
T Consensus 1504 ~~~s~~~~~vvvDsv~al~~~~e~ 1527 (1706)
T 3cmw_A 1504 LARSGAVDVIVVDSVAALTPKAEI 1527 (1706)
T ss_dssp HHHHTCCSEEEESCSTTCCCTTTT
T ss_pred HHHcCCCCEEEEccHHhCCccccc
Confidence 345668899999999999987543
No 320
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.91 E-value=0.00032 Score=51.82 Aligned_cols=24 Identities=25% Similarity=0.527 Sum_probs=21.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~ 65 (225)
.+.++|++|||||||++.++..+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 456999999999999999998873
No 321
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.91 E-value=0.001 Score=54.09 Aligned_cols=41 Identities=24% Similarity=0.405 Sum_probs=29.0
Q ss_pred cceeeeCCc-EEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccC
Q psy5910 34 KNIYLEKSN-ILLVGPTGCGKTLMVKTLAKII---NVPIIVVDAT 74 (225)
Q Consensus 34 ~~~~~~~~~-vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~ 74 (225)
+++....+. ++++||+|+||||++..+|..+ +..+..+++.
T Consensus 98 l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 98 IDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp CCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 444334444 4499999999999999998776 5556665543
No 322
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.91 E-value=0.00072 Score=58.44 Aligned_cols=25 Identities=12% Similarity=0.086 Sum_probs=22.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCC
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINV 66 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~ 66 (225)
.++|.|.|||||||+|++|++.++.
T Consensus 397 ~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 397 SIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred EEEecccCCCCHHHHHHHHHHHHHH
Confidence 5669999999999999999999975
No 323
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.90 E-value=0.00055 Score=54.36 Aligned_cols=23 Identities=48% Similarity=0.717 Sum_probs=20.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~ 64 (225)
.+.+.||+|+|||||.+.|+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 56799999999999999999876
No 324
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.87 E-value=0.00055 Score=56.92 Aligned_cols=23 Identities=39% Similarity=0.719 Sum_probs=20.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~ 64 (225)
.++++||+|+||||++++++..+
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 46699999999999999999876
No 325
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.87 E-value=0.00042 Score=60.54 Aligned_cols=35 Identities=20% Similarity=0.433 Sum_probs=27.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhC----CCeEEeccCcc
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIIN----VPIIVVDATSF 76 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~----~~~~~~~~~~~ 76 (225)
.+.|+|++||||||++++|+..++ ..+..+++..+
T Consensus 371 iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 371 TVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred EEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 455999999999999999999884 34555666544
No 326
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.87 E-value=0.0015 Score=48.07 Aligned_cols=31 Identities=19% Similarity=0.168 Sum_probs=24.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEec
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVVD 72 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~ 72 (225)
-+.+.|++|+||||++..++..+ +..+..+.
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 45599999999999999998876 44444444
No 327
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.87 E-value=0.00063 Score=59.16 Aligned_cols=48 Identities=23% Similarity=0.234 Sum_probs=33.1
Q ss_pred eEeecccce-eeeCCcEE-EEcCCCCcHHHHHHH--HHHHh--CCCeEEeccCc
Q psy5910 28 LFLLKSKNI-YLEKSNIL-LVGPTGCGKTLMVKT--LAKII--NVPIIVVDATS 75 (225)
Q Consensus 28 ~~~~~~~~~-~~~~~~vL-l~Gp~GtGKT~la~~--ia~~~--~~~~~~~~~~~ 75 (225)
...++++++ ..+.+.++ |.||+|||||||++. ++... +...+++++.+
T Consensus 25 ~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~ 78 (525)
T 1tf7_A 25 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE 78 (525)
T ss_dssp CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 344566666 66766555 999999999999999 44444 44556665543
No 328
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.87 E-value=0.00059 Score=56.51 Aligned_cols=26 Identities=27% Similarity=0.598 Sum_probs=22.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVP 67 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~ 67 (225)
.+.|+||+|||||||++.|+..+...
T Consensus 172 k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 172 TVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 45599999999999999999987553
No 329
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.85 E-value=0.00099 Score=54.00 Aligned_cols=79 Identities=18% Similarity=0.297 Sum_probs=45.3
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHh-----CCCeEEeccCccccc------Cc--------cCCcHHHH-HHHHHHhcch
Q psy5910 40 KSNILLVGPTGCGKTLMVKTLAKII-----NVPIIVVDATSFTEA------GY--------VGDDVESI-IQKLLHECDY 99 (225)
Q Consensus 40 ~~~vLl~Gp~GtGKT~la~~ia~~~-----~~~~~~~~~~~~~~~------~~--------~g~~~~~~-~~~~~~~~~~ 99 (225)
++.++++||||+|||+||-.++... +..+++++...-... ++ ...+.+.. +..+ ... .
T Consensus 28 ~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~-~~l-~ 105 (333)
T 3io5_A 28 SGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMV-NQL-D 105 (333)
T ss_dssp SEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHH-HHH-H
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHH-HHH-H
Confidence 3356799999999999987665433 556777777532110 00 01122222 2111 110 0
Q ss_pred hhhhhCCCEEEEcchhhhccc
Q psy5910 100 DVELAEQSIIYIDEIDKISKK 120 (225)
Q Consensus 100 ~~~~~~~~vl~iDEid~l~~~ 120 (225)
.++...+.+|++|-+..+.+.
T Consensus 106 ~i~~~~~~lvVIDSI~aL~~~ 126 (333)
T 3io5_A 106 AIERGEKVVVFIDSLGNLASK 126 (333)
T ss_dssp TCCTTCCEEEEEECSTTCBCC
T ss_pred HhhccCceEEEEecccccccc
Confidence 023457899999999999853
No 330
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.84 E-value=0.00065 Score=60.07 Aligned_cols=45 Identities=31% Similarity=0.471 Sum_probs=32.3
Q ss_pred eeeEecccce-EeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 19 VGVYNHYKRL-FLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 19 ~~l~~~~~~~-~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
+.+...|+.. ....+.+ ..+.+.++ |+||+|+|||||++.|+..+
T Consensus 95 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 95 EDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp GSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 3455555433 2556666 55666666 99999999999999999765
No 331
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.83 E-value=0.00073 Score=58.70 Aligned_cols=34 Identities=32% Similarity=0.516 Sum_probs=26.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCc
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATS 75 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~ 75 (225)
-|+++|.||+||||+|+.+++.+ +.....++..+
T Consensus 37 lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~ 73 (520)
T 2axn_A 37 VIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGE 73 (520)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccH
Confidence 46699999999999999999988 44444455433
No 332
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=96.82 E-value=0.00057 Score=60.04 Aligned_cols=35 Identities=20% Similarity=0.362 Sum_probs=29.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhC----CCeEEeccCcc
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIIN----VPIIVVDATSF 76 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~----~~~~~~~~~~~ 76 (225)
.|+|.|+||+||||+|+.+++.++ .+++.++...+
T Consensus 398 ~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~i 436 (573)
T 1m8p_A 398 TIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTV 436 (573)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHH
T ss_pred EEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHH
Confidence 466999999999999999999885 77888876554
No 333
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.82 E-value=0.00053 Score=56.26 Aligned_cols=34 Identities=15% Similarity=0.313 Sum_probs=26.3
Q ss_pred ecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 31 LKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 31 ~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
+++.++....+.++ |.||||+|||||.+.++..+
T Consensus 45 l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 45 IDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp HHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 34455555556665 99999999999999999765
No 334
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.82 E-value=0.0032 Score=54.33 Aligned_cols=34 Identities=29% Similarity=0.344 Sum_probs=27.4
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccC
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDAT 74 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~ 74 (225)
..|+++|++|+||||++..++..+ |.....+++.
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D 138 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICAD 138 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 357799999999999999999766 6667766663
No 335
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.82 E-value=0.00082 Score=49.76 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~ 64 (225)
-+.+.|++|+||||+++.+...+
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHhc
Confidence 45699999999999999998765
No 336
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.81 E-value=0.00065 Score=54.97 Aligned_cols=35 Identities=23% Similarity=0.252 Sum_probs=27.2
Q ss_pred EeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHH
Q psy5910 29 FLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 29 ~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~ 63 (225)
...+..-+.....+++|.|+||+|||++|..+.+.
T Consensus 133 ~~~H~~~v~~~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 133 TSLHGVLVDVYGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEESEEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred eeeeEEEEEECCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 33444445566678999999999999999999875
No 337
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.81 E-value=0.00075 Score=57.02 Aligned_cols=59 Identities=20% Similarity=0.157 Sum_probs=36.5
Q ss_pred HHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccC
Q psy5910 13 TKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDAT 74 (225)
Q Consensus 13 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~ 74 (225)
+++.+.+.+...+.... .++++. +...+++.|++|+||||++..+|..+ +..+..+++.
T Consensus 74 ~~~~v~~~L~~~~~~~~--~~i~l~-~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D 135 (425)
T 2ffh_A 74 ILATVYEALKEALGGEA--RLPVLK-DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (425)
T ss_dssp HHHHHHHHHHHHTTSSC--CCCCCC-SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred HHHHHHHHHHHHhCCCc--ccccCC-CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecc
Confidence 34444444444443221 334444 33345589999999999999999877 4556666553
No 338
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.79 E-value=0.0015 Score=52.47 Aligned_cols=36 Identities=33% Similarity=0.490 Sum_probs=27.2
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHh----CCCeEEeccCc
Q psy5910 40 KSNILLVGPTGCGKTLMVKTLAKII----NVPIIVVDATS 75 (225)
Q Consensus 40 ~~~vLl~Gp~GtGKT~la~~ia~~~----~~~~~~~~~~~ 75 (225)
...++++||+|+||||++..+|..+ |..+..+++..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 3456699999999999999998765 44666666543
No 339
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.78 E-value=0.00038 Score=59.52 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=24.1
Q ss_pred cceeeeCC-cEEEEcCCCCcHHHHHHHHHHHh
Q psy5910 34 KNIYLEKS-NILLVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 34 ~~~~~~~~-~vLl~Gp~GtGKT~la~~ia~~~ 64 (225)
.++....+ .+.|.||+|||||||+|.|+...
T Consensus 131 vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 131 IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp HHHHSSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CceEeCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 34444444 45599999999999999999876
No 340
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.77 E-value=0.00059 Score=56.52 Aligned_cols=32 Identities=31% Similarity=0.422 Sum_probs=25.0
Q ss_pred cceeeeCC-cEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910 34 KNIYLEKS-NILLVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 34 ~~~~~~~~-~vLl~Gp~GtGKT~la~~ia~~~~ 65 (225)
.++..+.+ .+++.||+|+||||++++++..++
T Consensus 168 l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 168 LRRAVQLERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp HHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred HHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34444444 566999999999999999998874
No 341
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.76 E-value=0.00091 Score=56.44 Aligned_cols=24 Identities=38% Similarity=0.555 Sum_probs=21.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~ 65 (225)
.+++.||+|+||||+.++++..++
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHC
T ss_pred eEEEECCCCCCHHHHHHHHHhhcC
Confidence 456999999999999999999884
No 342
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.74 E-value=0.00092 Score=49.77 Aligned_cols=29 Identities=21% Similarity=0.472 Sum_probs=20.5
Q ss_pred cceeeeCCcEEEEcCCCCcHHHHHHHHHH
Q psy5910 34 KNIYLEKSNILLVGPTGCGKTLMVKTLAK 62 (225)
Q Consensus 34 ~~~~~~~~~vLl~Gp~GtGKT~la~~ia~ 62 (225)
.++..+...|++.|++|+|||+|.+.+..
T Consensus 17 ~~~~~~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 17 LGLWNKHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -------CEEEEEESTTSSHHHHHHHHHH
T ss_pred hhccCCccEEEEECCCCCCHHHHHHHHhc
Confidence 33445556899999999999999999986
No 343
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.74 E-value=0.0009 Score=48.15 Aligned_cols=27 Identities=19% Similarity=0.443 Sum_probs=21.6
Q ss_pred eeCCcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910 38 LEKSNILLVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 38 ~~~~~vLl~Gp~GtGKT~la~~ia~~~ 64 (225)
...+-.+|+||.|+|||++..+|.-.+
T Consensus 21 f~~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 21 FKEGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 334345699999999999999998655
No 344
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=96.73 E-value=0.00052 Score=60.30 Aligned_cols=46 Identities=13% Similarity=0.253 Sum_probs=33.1
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHH
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAK 62 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~ 62 (225)
..++|.+..++.|.+.+... ....+.++++||+|+|||+||+.+++
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~------------~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKL------------KGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTS------------TTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CeecccHHHHHHHHHHHhcc------------cCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 45788888888887766211 01123566999999999999998864
No 345
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.73 E-value=0.00098 Score=53.60 Aligned_cols=40 Identities=28% Similarity=0.300 Sum_probs=28.2
Q ss_pred ccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEecc
Q psy5910 33 SKNIYLEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDA 73 (225)
Q Consensus 33 ~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~ 73 (225)
+.++. +...+.++|++|+||||++..+|..+ +..+..+++
T Consensus 92 ~i~~~-~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~ 134 (295)
T 1ls1_A 92 LPVLK-DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (295)
T ss_dssp CCCCC-SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred eeecC-CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 34444 33345589999999999999999776 455555554
No 346
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.69 E-value=0.00044 Score=58.36 Aligned_cols=33 Identities=30% Similarity=0.326 Sum_probs=26.7
Q ss_pred ecccceeeeCCcE---EEEcCCCCcHHHHHHHHHHH
Q psy5910 31 LKSKNIYLEKSNI---LLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 31 ~~~~~~~~~~~~v---Ll~Gp~GtGKT~la~~ia~~ 63 (225)
+++.++..+.+.+ .|+||+|+|||||.+.|+..
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 6667777777765 59999999999999999865
No 347
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.68 E-value=0.0014 Score=60.43 Aligned_cols=33 Identities=21% Similarity=0.429 Sum_probs=24.2
Q ss_pred ecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHH
Q psy5910 31 LKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 31 ~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~ 63 (225)
..+.++..+.+.++ |+||+|+||||+.|.++..
T Consensus 663 ~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 663 PNNTDLSEDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp CEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred cccccccCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 34455555545555 9999999999999988743
No 348
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.67 E-value=0.0019 Score=56.29 Aligned_cols=30 Identities=40% Similarity=0.634 Sum_probs=24.7
Q ss_pred ceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 35 NIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 35 ~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
++..+.+.++ |.||+|+|||||++.|+...
T Consensus 306 ~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 306 PGEIKKGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp CEEEETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3344666666 99999999999999999876
No 349
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=96.67 E-value=0.00045 Score=58.02 Aligned_cols=40 Identities=23% Similarity=0.415 Sum_probs=31.7
Q ss_pred cceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910 26 KRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 26 ~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~ 65 (225)
.+...+++.++...++-+.|+||+|+|||||.++|+-.++
T Consensus 46 ~nf~~l~~v~l~~~~G~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 46 RNLATITQLELELGGGFCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp EEETTEEEEEEECCSSEEEEEESHHHHHHHHTHHHHHHTT
T ss_pred ccccceeeEEEecCCCcEEEECCCCCCHHHHHHHHHHHhC
Confidence 3445566777878777555999999999999999987775
No 350
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.67 E-value=0.00053 Score=59.39 Aligned_cols=33 Identities=21% Similarity=0.417 Sum_probs=25.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhCC--CeEEecc
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKIINV--PIIVVDA 73 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~~~--~~~~~~~ 73 (225)
..+++.||+|+||||++++++..+.. ..+.+..
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied 295 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIED 295 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcC
Confidence 35889999999999999999988742 3445443
No 351
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.66 E-value=0.0018 Score=59.92 Aligned_cols=31 Identities=16% Similarity=0.244 Sum_probs=22.9
Q ss_pred cccceeeeCCcEE-EEcCCCCcHHHHHHHHHH
Q psy5910 32 KSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAK 62 (225)
Q Consensus 32 ~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~ 62 (225)
.+.++....+.++ |+||+|+||||+.|.++.
T Consensus 653 ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 653 NDVYFEKDKQMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp EEEEEETTTBCEEEEECCTTSSHHHHHHHHHH
T ss_pred ccceeecCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3455555544444 999999999999999853
No 352
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.62 E-value=0.00089 Score=62.04 Aligned_cols=36 Identities=22% Similarity=0.428 Sum_probs=31.4
Q ss_pred EeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 29 FLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 29 ~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
..+++.++....+.++ |+||+|+|||||++.|+..+
T Consensus 687 ~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 687 PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp CSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSS
T ss_pred eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4567888888888777 99999999999999999876
No 353
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.61 E-value=0.0012 Score=49.19 Aligned_cols=23 Identities=22% Similarity=0.572 Sum_probs=20.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~ 64 (225)
.+.+.|++|+|||||.+.++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57799999999999999998754
No 354
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.60 E-value=0.0014 Score=50.13 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=21.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~ 65 (225)
-|.|.|++|+||||+++.+++.+.
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 355999999999999999999883
No 355
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.60 E-value=0.0011 Score=56.60 Aligned_cols=69 Identities=14% Similarity=0.208 Sum_probs=48.9
Q ss_pred CCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcce--eeccCc----
Q psy5910 106 QSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNIL--FIAGGA---- 179 (225)
Q Consensus 106 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~--~i~~~~---- 179 (225)
+.|+||||++.+... +++.|++.|+.. ... +++++| |.. .|...+
T Consensus 296 ~~VliIDEa~~l~~~-------------a~~aLlk~lEe~-------------~~~--~~il~t-n~~~~~i~~~~~~~~ 346 (456)
T 2c9o_A 296 PGVLFVDEVHMLDIE-------------CFTYLHRALESS-------------IAP--IVIFAS-NRGNCVIRGTEDITS 346 (456)
T ss_dssp ECEEEEESGGGCBHH-------------HHHHHHHHTTST-------------TCC--EEEEEE-CCSEEECBTTSSCEE
T ss_pred ceEEEEechhhcCHH-------------HHHHHHHHhhcc-------------CCC--EEEEec-CCccccccccccccc
Confidence 479999999999866 899999999852 122 544454 331 122222
Q ss_pred cccHHHHHHhhcccccccccccccc
Q psy5910 180 FSGIENFIINRINQETNFLEKLNNN 204 (225)
Q Consensus 180 ~~~l~~al~~Rf~~~i~~~~~~~~~ 204 (225)
+..+++.+++||.. +.|+.++.++
T Consensus 347 ~~~l~~~i~sR~~~-~~~~~~~~~e 370 (456)
T 2c9o_A 347 PHGIPLDLLDRVMI-IRTMLYTPQE 370 (456)
T ss_dssp ETTCCHHHHTTEEE-EECCCCCHHH
T ss_pred cccCChhHHhhcce-eeCCCCCHHH
Confidence 56899999999977 5787777765
No 356
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.59 E-value=0.011 Score=45.00 Aligned_cols=29 Identities=17% Similarity=0.156 Sum_probs=22.3
Q ss_pred EEcCCCCcHHHHHHHHHHHh---CCCeEEecc
Q psy5910 45 LVGPTGCGKTLMVKTLAKII---NVPIIVVDA 73 (225)
Q Consensus 45 l~Gp~GtGKT~la~~ia~~~---~~~~~~~~~ 73 (225)
++||.|+||||.+-.++..+ +..++.+.+
T Consensus 33 itG~MgsGKTT~lL~~a~r~~~~g~kVli~k~ 64 (214)
T 2j9r_A 33 ICGSMFSGKSEELIRRVRRTQFAKQHAIVFKP 64 (214)
T ss_dssp EECSTTSCHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EECCCCCcHHHHHHHHHHHHHHCCCEEEEEEe
Confidence 89999999998876665544 677777664
No 357
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.58 E-value=0.0013 Score=49.14 Aligned_cols=22 Identities=23% Similarity=0.638 Sum_probs=20.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~ 63 (225)
.+.+.|++|+|||+|.+.++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6789999999999999999875
No 358
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.58 E-value=0.0022 Score=56.72 Aligned_cols=30 Identities=40% Similarity=0.625 Sum_probs=24.6
Q ss_pred ceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 35 NIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 35 ~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
++....+.++ |.||+|+|||||++.|+..+
T Consensus 376 ~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 376 PGEIRKGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp CEEEETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3334666666 99999999999999999876
No 359
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.54 E-value=0.0014 Score=57.08 Aligned_cols=30 Identities=33% Similarity=0.554 Sum_probs=24.9
Q ss_pred ceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 35 NIYLEKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 35 ~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
++..+.+.++ |.||+|||||||++.|+...
T Consensus 288 ~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 288 NGEAKEGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp CEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cceECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3445667777 99999999999999999876
No 360
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=96.54 E-value=0.00071 Score=54.68 Aligned_cols=32 Identities=22% Similarity=0.302 Sum_probs=24.9
Q ss_pred ecccceeeeCCcEEEEcCCCCcHHHHHHHHHH
Q psy5910 31 LKSKNIYLEKSNILLVGPTGCGKTLMVKTLAK 62 (225)
Q Consensus 31 ~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~ 62 (225)
++..-+.....+|||.|+||+|||++|-.+.+
T Consensus 138 ~H~~~v~~~g~gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 138 IHGVLLEVFGVGVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp EEEEEEEETTEEEEEEESSSSSHHHHHHHHHT
T ss_pred eEEEEEEECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 33344445667899999999999999988765
No 361
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.53 E-value=0.0026 Score=48.77 Aligned_cols=27 Identities=30% Similarity=0.267 Sum_probs=23.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCe
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPI 68 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~ 68 (225)
-+.+.|++|+||||+++.+++.++.+.
T Consensus 7 ~i~~eG~~g~GKst~~~~l~~~l~~~~ 33 (216)
T 3tmk_A 7 LILIEGLDRTGKTTQCNILYKKLQPNC 33 (216)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHCSSE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccc
Confidence 455999999999999999999997643
No 362
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.52 E-value=0.0016 Score=54.02 Aligned_cols=31 Identities=19% Similarity=0.459 Sum_probs=23.8
Q ss_pred cceeeeCCcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910 34 KNIYLEKSNILLVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 34 ~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~ 64 (225)
..+..+.+-.+|+||+|+||||+..+|+-.+
T Consensus 17 ~~i~~~~g~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 17 VDIEFQSGITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp EEEECCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEecCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3454555556699999999999999998554
No 363
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.51 E-value=0.0015 Score=50.65 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~ 65 (225)
-+.+.|++|+||||+++.+++.++
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 466999999999999999999984
No 364
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.50 E-value=0.012 Score=49.86 Aligned_cols=35 Identities=34% Similarity=0.543 Sum_probs=27.9
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHh----CCCeEEeccCc
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKII----NVPIIVVDATS 75 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~----~~~~~~~~~~~ 75 (225)
..++++|++|+||||++-.+|..+ |..+..+++..
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 356689999999999998888665 66777777754
No 365
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.49 E-value=0.0013 Score=50.85 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=17.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~ 64 (225)
-|.|.|++|+||||+++.+++.+
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 35589999999999999999887
No 366
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.45 E-value=0.0015 Score=52.62 Aligned_cols=22 Identities=27% Similarity=0.625 Sum_probs=18.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~ 63 (225)
.+.+.||+|+|||||.+.++..
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4589999999999999997643
No 367
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.45 E-value=0.0018 Score=53.57 Aligned_cols=35 Identities=17% Similarity=0.243 Sum_probs=26.7
Q ss_pred eecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910 30 LLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 30 ~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~ 64 (225)
.+.+.++..+.+-..|+||+|+|||++.++|+-.+
T Consensus 16 ~~~~~~~~~~~g~~~i~G~nG~GKttll~ai~~~~ 50 (359)
T 2o5v_A 16 NLAPGTLNFPEGVTGIYGENGAGKTNLLEAAYLAL 50 (359)
T ss_dssp TCCSEEEECCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceeeeEEEEcCCeEEEECCCCCChhHHHHHHHHhc
Confidence 34455666666545599999999999999998644
No 368
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.45 E-value=0.0017 Score=46.34 Aligned_cols=22 Identities=27% Similarity=0.526 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~ 63 (225)
.+++.|++|+|||+|++.+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999998864
No 369
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.45 E-value=0.0019 Score=50.20 Aligned_cols=23 Identities=22% Similarity=0.495 Sum_probs=20.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~ 64 (225)
-+.|.|++|+||||+++.+++.+
T Consensus 29 ~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 29 FIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp EEEEEESTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 45599999999999999999887
No 370
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.43 E-value=0.0037 Score=52.11 Aligned_cols=34 Identities=26% Similarity=0.421 Sum_probs=26.2
Q ss_pred eCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEec
Q psy5910 39 EKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVD 72 (225)
Q Consensus 39 ~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~ 72 (225)
..+++++.||+|+|||++++.++..+ +..++.++
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 45689999999999999999887654 44444444
No 371
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.42 E-value=0.0021 Score=48.65 Aligned_cols=25 Identities=28% Similarity=0.533 Sum_probs=21.9
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910 40 KSNILLVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 40 ~~~vLl~Gp~GtGKT~la~~ia~~~ 64 (225)
...++++|++|+|||+|+..+....
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578999999999999999998754
No 372
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.42 E-value=0.003 Score=51.21 Aligned_cols=33 Identities=18% Similarity=0.178 Sum_probs=25.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccC
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVVDAT 74 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~ 74 (225)
-+++.|+||+|||++|..++... +.++.+++..
T Consensus 70 l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 70 FVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 45599999999999999888554 4566666654
No 373
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.40 E-value=0.0017 Score=49.99 Aligned_cols=21 Identities=33% Similarity=0.594 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q psy5910 43 ILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 43 vLl~Gp~GtGKT~la~~ia~~ 63 (225)
+.|.|++|+||||+++.++..
T Consensus 23 i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 23 VLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEECSTTSCHHHHHHTTGGG
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 349999999999999999987
No 374
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.38 E-value=0.0018 Score=46.39 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=20.4
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~ 63 (225)
..|++.|++|+|||+|.+.+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 37889999999999999998864
No 375
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.38 E-value=0.0014 Score=58.68 Aligned_cols=32 Identities=22% Similarity=0.433 Sum_probs=27.3
Q ss_pred eecccceeeeCCcEE-EEcCCCCcHHHHHHHHH
Q psy5910 30 LLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLA 61 (225)
Q Consensus 30 ~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia 61 (225)
.+++.++..+.+.++ |+||+|||||||++.+.
T Consensus 337 ~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 337 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp TCCSEEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred ccccceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 467888999988877 99999999999997653
No 376
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=96.37 E-value=0.0023 Score=48.76 Aligned_cols=30 Identities=30% Similarity=0.407 Sum_probs=24.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhCCCeEEec
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVD 72 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~ 72 (225)
.|-|+|..||||||+++.+++ +|.+++..+
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 455999999999999999998 777765543
No 377
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.36 E-value=0.002 Score=55.11 Aligned_cols=24 Identities=38% Similarity=0.584 Sum_probs=21.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~ 65 (225)
.|+++|.||+||||+++.+++.++
T Consensus 41 ~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 41 LIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 577999999999999999998874
No 378
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.36 E-value=0.0008 Score=52.99 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=21.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~ 65 (225)
-|.|.|++|+||||+++.|++.+.
T Consensus 26 ~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 26 KISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp EEEEECSTTSSHHHHHTTTGGGCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 456999999999999999999883
No 379
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.36 E-value=0.0023 Score=45.93 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=20.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~ 63 (225)
.+++.|++|+|||+|++.+...
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6889999999999999999864
No 380
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.36 E-value=0.0023 Score=51.88 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=20.5
Q ss_pred eCCc-EEEEcCCCCcHHHHHHHHHHH
Q psy5910 39 EKSN-ILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 39 ~~~~-vLl~Gp~GtGKT~la~~ia~~ 63 (225)
+.+. ++++||||+|||++|..++..
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4444 559999999999999998865
No 381
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.35 E-value=0.0018 Score=47.77 Aligned_cols=21 Identities=43% Similarity=0.811 Sum_probs=19.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHH
Q psy5910 42 NILLVGPTGCGKTLMVKTLAK 62 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~ 62 (225)
.+++.|++|+|||+|.+.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 588999999999999999875
No 382
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.34 E-value=0.0026 Score=47.09 Aligned_cols=25 Identities=28% Similarity=0.533 Sum_probs=21.5
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910 40 KSNILLVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 40 ~~~vLl~Gp~GtGKT~la~~ia~~~ 64 (225)
...++++|++|+|||+|...+....
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578899999999999999998653
No 383
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.33 E-value=0.0016 Score=62.40 Aligned_cols=47 Identities=26% Similarity=0.540 Sum_probs=37.5
Q ss_pred eeeEecccc---eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910 19 VGVYNHYKR---LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 19 ~~l~~~~~~---~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~ 65 (225)
+.+...|.. ...+++.++..+++.++ ++||+|+|||||++.++..+.
T Consensus 391 ~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~ 441 (1284)
T 3g5u_A 391 KNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYD 441 (1284)
T ss_dssp EEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSC
T ss_pred EEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345555542 34678889999988777 999999999999999998774
No 384
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.32 E-value=0.0026 Score=48.97 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCC
Q psy5910 43 ILLVGPTGCGKTLMVKTLAKIINV 66 (225)
Q Consensus 43 vLl~Gp~GtGKT~la~~ia~~~~~ 66 (225)
|.|.|++|+||||+++.+++.++.
T Consensus 24 i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 24 ITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHhh
Confidence 448899999999999999987744
No 385
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.32 E-value=0.0026 Score=48.10 Aligned_cols=29 Identities=17% Similarity=0.367 Sum_probs=22.9
Q ss_pred eeCCcEEEEcCCCCcHHHHHHHHHHHhCC
Q psy5910 38 LEKSNILLVGPTGCGKTLMVKTLAKIINV 66 (225)
Q Consensus 38 ~~~~~vLl~Gp~GtGKT~la~~ia~~~~~ 66 (225)
..++-.+|+||.|+|||++..+|.-.++.
T Consensus 21 f~~~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 21 FKEGINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred eCCCeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 34445569999999999999999876643
No 386
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.31 E-value=0.0025 Score=45.47 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=20.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~ 64 (225)
.+++.|++|+|||+|++.+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 68899999999999999998643
No 387
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.29 E-value=0.0025 Score=46.14 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=19.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHH
Q psy5910 42 NILLVGPTGCGKTLMVKTLAK 62 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~ 62 (225)
.+.+.|++|+|||+|.+.+..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999999985
No 388
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.27 E-value=0.0027 Score=46.14 Aligned_cols=24 Identities=17% Similarity=0.390 Sum_probs=20.8
Q ss_pred eCCcEEEEcCCCCcHHHHHHHHHH
Q psy5910 39 EKSNILLVGPTGCGKTLMVKTLAK 62 (225)
Q Consensus 39 ~~~~vLl~Gp~GtGKT~la~~ia~ 62 (225)
....|++.|++|+|||+|.+.+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 345788999999999999999875
No 389
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.27 E-value=0.0028 Score=45.34 Aligned_cols=22 Identities=18% Similarity=0.466 Sum_probs=19.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~ 63 (225)
.|++.|++|+|||+|.+.+...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6889999999999999988754
No 390
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.27 E-value=0.0012 Score=57.56 Aligned_cols=44 Identities=16% Similarity=0.141 Sum_probs=31.8
Q ss_pred echhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHH
Q psy5910 8 IGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAK 62 (225)
Q Consensus 8 ~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~ 62 (225)
+|.+..++.|.+.+...- ....+.|.++|+.|+|||+||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~-----------~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC-----------DLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT-----------TSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc-----------CCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 588888888887762110 01123455999999999999999997
No 391
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.26 E-value=0.0028 Score=48.44 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~ 64 (225)
-|.|.|++|+||||.++.+++.+
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 35589999999999999999887
No 392
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.25 E-value=0.0028 Score=56.31 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=18.5
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~ 64 (225)
+.+++.||||||||+++..+...+
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999998776665443
No 393
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.23 E-value=0.0026 Score=45.67 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=20.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~ 64 (225)
.|++.|++|+|||+|.+.+...-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999887543
No 394
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.23 E-value=0.0024 Score=61.20 Aligned_cols=37 Identities=32% Similarity=0.648 Sum_probs=33.0
Q ss_pred EeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910 29 FLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 29 ~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~ 65 (225)
..+++.++..+++.++ |+||+|+|||||++.++....
T Consensus 1047 ~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~ 1084 (1284)
T 3g5u_A 1047 PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD 1084 (1284)
T ss_dssp CSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC
T ss_pred eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 4678899999998888 999999999999999998763
No 395
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.23 E-value=0.0033 Score=55.55 Aligned_cols=35 Identities=31% Similarity=0.491 Sum_probs=27.5
Q ss_pred eecccceeeeCC-----cEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 30 LLKSKNIYLEKS-----NIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 30 ~~~~~~~~~~~~-----~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
.+.+.++....+ .++ |.||+|+|||||++.|+...
T Consensus 362 ~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 362 TQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp ECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSS
T ss_pred ccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCC
Confidence 455666766665 344 99999999999999999876
No 396
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=96.21 E-value=0.0032 Score=54.98 Aligned_cols=35 Identities=20% Similarity=0.389 Sum_probs=27.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcc
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSF 76 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~ 76 (225)
.++|.|++|+||||+|+.+++.+ |.++..++...+
T Consensus 374 ~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~i 411 (546)
T 2gks_A 374 CVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVV 411 (546)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHH
T ss_pred EEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHh
Confidence 46699999999999999999877 446677766544
No 397
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.21 E-value=0.0024 Score=47.02 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=19.9
Q ss_pred CcEEEEcCCCCcHHHHHHHHHH
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAK 62 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~ 62 (225)
..+++.|++|+|||+|.+.++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3688999999999999999986
No 398
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.20 E-value=0.0033 Score=54.59 Aligned_cols=36 Identities=31% Similarity=0.432 Sum_probs=25.8
Q ss_pred eeCCcEE-EEcCCCCcHHHHHHHHHHHh---CCCeEEecc
Q psy5910 38 LEKSNIL-LVGPTGCGKTLMVKTLAKII---NVPIIVVDA 73 (225)
Q Consensus 38 ~~~~~vL-l~Gp~GtGKT~la~~ia~~~---~~~~~~~~~ 73 (225)
.+++.++ +.||||+|||||++.++... +.+.+++..
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ 317 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAY 317 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 4455454 99999999999999998765 334444443
No 399
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.20 E-value=0.0032 Score=45.29 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=20.9
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~ 64 (225)
-.|++.|++|+|||+|.+.+....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 378999999999999999988653
No 400
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.20 E-value=0.0031 Score=45.75 Aligned_cols=23 Identities=22% Similarity=0.475 Sum_probs=20.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~ 63 (225)
..|++.|++|+|||+|.+.+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 37899999999999999998754
No 401
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.19 E-value=0.003 Score=55.88 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=20.1
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910 40 KSNILLVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 40 ~~~vLl~Gp~GtGKT~la~~ia~~~ 64 (225)
.+.+++.|+||||||+++..+...+
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 3567899999999999887776554
No 402
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.18 E-value=0.0033 Score=45.27 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=20.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~ 63 (225)
.|++.|++|+|||+|.+.+...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 7889999999999999998864
No 403
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.18 E-value=0.0032 Score=45.27 Aligned_cols=22 Identities=32% Similarity=0.635 Sum_probs=19.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~ 63 (225)
.|++.|++|+|||+|.+.+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6889999999999999998753
No 404
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.16 E-value=0.011 Score=50.06 Aligned_cols=21 Identities=33% Similarity=0.575 Sum_probs=17.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHH
Q psy5910 42 NILLVGPTGCGKTLMVKTLAK 62 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~ 62 (225)
-.++.|+||||||++...+++
T Consensus 163 v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp EEEEEECTTSCHHHHHHHHCC
T ss_pred EEEEEcCCCCCHHHHHHHHhc
Confidence 345999999999999877764
No 405
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.16 E-value=0.0034 Score=45.71 Aligned_cols=23 Identities=22% Similarity=0.512 Sum_probs=20.2
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~ 63 (225)
..|++.|++|+|||+|.+.+...
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 37889999999999999988764
No 406
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.16 E-value=0.0029 Score=51.80 Aligned_cols=29 Identities=17% Similarity=0.417 Sum_probs=21.7
Q ss_pred eeeeCCcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910 36 IYLEKSNILLVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 36 ~~~~~~~vLl~Gp~GtGKT~la~~ia~~~ 64 (225)
+...++-.+|+||.|+|||++..+|+-.+
T Consensus 19 i~f~~~~~~i~G~NGsGKS~lleAi~~~l 47 (339)
T 3qkt_A 19 VEFKEGINLIIGQNGSGKSSLLDAILVGL 47 (339)
T ss_dssp EECCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EcCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 33444445699999999999999986543
No 407
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.14 E-value=0.0032 Score=45.53 Aligned_cols=21 Identities=33% Similarity=0.616 Sum_probs=19.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHH
Q psy5910 42 NILLVGPTGCGKTLMVKTLAK 62 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~ 62 (225)
.|++.|++|+|||+|.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCccHHHHHHHHhc
Confidence 688999999999999998874
No 408
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.14 E-value=0.0038 Score=44.79 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~ 63 (225)
-.|++.|++|+|||+|.+.+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 37889999999999999998863
No 409
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.13 E-value=0.0014 Score=49.13 Aligned_cols=25 Identities=20% Similarity=0.450 Sum_probs=20.9
Q ss_pred eeCCcEEEEcCCCCcHHHHHHHHHH
Q psy5910 38 LEKSNILLVGPTGCGKTLMVKTLAK 62 (225)
Q Consensus 38 ~~~~~vLl~Gp~GtGKT~la~~ia~ 62 (225)
.+...+++.|++|+|||+|.+.+..
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3445788999999999999998863
No 410
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.13 E-value=0.0031 Score=56.43 Aligned_cols=29 Identities=24% Similarity=0.517 Sum_probs=25.5
Q ss_pred EeecccceeeeCCcEE-EEcCCCCcHHHHH
Q psy5910 29 FLLKSKNIYLEKSNIL-LVGPTGCGKTLMV 57 (225)
Q Consensus 29 ~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la 57 (225)
..+++.++..+.+.++ |+||+|+|||||+
T Consensus 32 ~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 32 HNLKNIDVEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp TTCCSEEEEEETTSEEEEECSTTSSHHHHH
T ss_pred cceeccEEEECCCCEEEEECCCCCCHHHHh
Confidence 4577889999998877 9999999999996
No 411
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.10 E-value=0.0022 Score=54.07 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=20.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~ 64 (225)
.|.|+||+|+|||||.+.++...
T Consensus 33 ~I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 33 TLMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp EEEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 35899999999999999998654
No 412
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.10 E-value=0.0039 Score=44.67 Aligned_cols=22 Identities=18% Similarity=0.483 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~ 63 (225)
.+++.|++|+|||+|.+.+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6889999999999999999863
No 413
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.09 E-value=0.0039 Score=44.62 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=19.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~ 63 (225)
.+++.|++|+|||+|.+.+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998754
No 414
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.09 E-value=0.0055 Score=50.17 Aligned_cols=33 Identities=12% Similarity=0.175 Sum_probs=25.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccC
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVVDAT 74 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~ 74 (225)
-+++.|+||+|||++|..+|... +.++.+++..
T Consensus 48 LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE 83 (338)
T 4a1f_A 48 LVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE 83 (338)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 45599999999999999887664 6667676654
No 415
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.08 E-value=0.0037 Score=45.01 Aligned_cols=20 Identities=35% Similarity=0.752 Sum_probs=18.4
Q ss_pred cEEEEcCCCCcHHHHHHHHH
Q psy5910 42 NILLVGPTGCGKTLMVKTLA 61 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia 61 (225)
.+++.|++|+|||+|.+.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58899999999999999986
No 416
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=96.08 E-value=0.0011 Score=51.26 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhC
Q psy5910 43 ILLVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 43 vLl~Gp~GtGKT~la~~ia~~~~ 65 (225)
+.|+||+||||||+.++|+..+.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcccc
Confidence 44899999999999999998874
No 417
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.07 E-value=0.0029 Score=55.95 Aligned_cols=26 Identities=38% Similarity=0.553 Sum_probs=22.1
Q ss_pred eCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 39 EKSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 39 ~~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
..+.++ |.||+|+|||||.+.|+..+
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 345566 99999999999999999866
No 418
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.07 E-value=0.0039 Score=45.83 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.4
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~ 63 (225)
..|++.|++|+|||+|.+.+...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999999999863
No 419
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.06 E-value=0.0038 Score=44.92 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=19.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHH
Q psy5910 42 NILLVGPTGCGKTLMVKTLAK 62 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~ 62 (225)
.|++.|++|+|||+|.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 688999999999999999875
No 420
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.06 E-value=0.0034 Score=45.03 Aligned_cols=21 Identities=29% Similarity=0.695 Sum_probs=18.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHH
Q psy5910 42 NILLVGPTGCGKTLMVKTLAK 62 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~ 62 (225)
.+++.|++|+|||+|.+.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 688999999999999998853
No 421
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.02 E-value=0.0042 Score=45.06 Aligned_cols=23 Identities=17% Similarity=0.353 Sum_probs=20.2
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~ 63 (225)
-.|++.|++|+|||+|.+.+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47889999999999999998753
No 422
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.01 E-value=0.0039 Score=45.48 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=19.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~ 63 (225)
.+++.|+||+|||+|.+.++..
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6789999999999999999864
No 423
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.01 E-value=0.0044 Score=45.69 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.5
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~ 63 (225)
-.|++.|++|+|||+|++.+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 37889999999999999999864
No 424
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.99 E-value=0.0043 Score=45.06 Aligned_cols=23 Identities=22% Similarity=0.473 Sum_probs=20.5
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~ 63 (225)
..+++.|++|+|||+|.+.+...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 37889999999999999998865
No 425
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.99 E-value=0.0046 Score=44.51 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=20.1
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~ 63 (225)
..|++.|++|+|||+|.+.+...
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 37889999999999999999753
No 426
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.99 E-value=0.0038 Score=51.52 Aligned_cols=24 Identities=25% Similarity=0.506 Sum_probs=20.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~ 65 (225)
.+.|.||||+|||||+++|+....
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 456999999999999999996543
No 427
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.99 E-value=0.0046 Score=44.81 Aligned_cols=24 Identities=17% Similarity=0.452 Sum_probs=20.8
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~ 64 (225)
..+++.|++|+|||+|.+.+....
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 378999999999999999998643
No 428
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.98 E-value=0.0046 Score=45.32 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=20.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~ 64 (225)
.|++.|++|+|||+|.+.+....
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 68899999999999999998643
No 429
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.98 E-value=0.0045 Score=45.53 Aligned_cols=22 Identities=41% Similarity=0.755 Sum_probs=20.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~ 63 (225)
.+++.|++|+|||+|.+.+...
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999999864
No 430
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.97 E-value=0.0046 Score=45.73 Aligned_cols=23 Identities=26% Similarity=0.587 Sum_probs=20.4
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~ 63 (225)
-.|++.|++|+|||+|.+.+...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 36899999999999999998864
No 431
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.97 E-value=0.0047 Score=45.13 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=20.4
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~ 63 (225)
..|++.|++|+|||+|.+.+...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 47899999999999999998864
No 432
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.96 E-value=0.0043 Score=47.04 Aligned_cols=25 Identities=28% Similarity=0.541 Sum_probs=21.6
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~~ 65 (225)
..+++.|++|+||||++..++..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3677999999999999999988763
No 433
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.96 E-value=0.0031 Score=50.76 Aligned_cols=24 Identities=17% Similarity=0.357 Sum_probs=20.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKIIN 65 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~~ 65 (225)
-+.+.||||+|||||.++|+....
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred eEEEECCCCCcHHHHHHHhccccc
Confidence 344999999999999999997653
No 434
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.96 E-value=0.0074 Score=49.69 Aligned_cols=32 Identities=19% Similarity=0.376 Sum_probs=24.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEecc
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVVDA 73 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~ 73 (225)
.|.++|+||+||||++..++..+ +..+..++.
T Consensus 81 ~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~ 115 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAV 115 (355)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEec
Confidence 56699999999999999998776 555444443
No 435
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.95 E-value=0.0041 Score=50.08 Aligned_cols=21 Identities=33% Similarity=0.618 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q psy5910 43 ILLVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 43 vLl~Gp~GtGKT~la~~ia~~~ 64 (225)
+.|.||||+|||||.++|+ ..
T Consensus 168 ~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 168 CILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp EEEECSTTSSHHHHHHHHH-SC
T ss_pred EEEECCCCCCHHHHHHHHH-Hh
Confidence 4499999999999999999 65
No 436
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.94 E-value=0.0046 Score=45.73 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=20.2
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHH
Q psy5910 40 KSNILLVGPTGCGKTLMVKTLAK 62 (225)
Q Consensus 40 ~~~vLl~Gp~GtGKT~la~~ia~ 62 (225)
...+++.|++|+|||+|.+.+..
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35789999999999999998874
No 437
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.94 E-value=0.0043 Score=45.09 Aligned_cols=22 Identities=27% Similarity=0.623 Sum_probs=19.5
Q ss_pred CcEEEEcCCCCcHHHHHHHHHH
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAK 62 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~ 62 (225)
..|++.|++|+|||+|++.+..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3788999999999999998864
No 438
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.94 E-value=0.0037 Score=49.34 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.2
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~ 63 (225)
..+.|.|+||+|||||.+++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 36889999999999999999754
No 439
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.94 E-value=0.0048 Score=45.21 Aligned_cols=23 Identities=22% Similarity=0.517 Sum_probs=20.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~ 63 (225)
-.|++.|++|+|||+|.+.+...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 37899999999999999998754
No 440
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.93 E-value=0.0046 Score=44.87 Aligned_cols=21 Identities=29% Similarity=0.542 Sum_probs=19.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHH
Q psy5910 42 NILLVGPTGCGKTLMVKTLAK 62 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~ 62 (225)
.|++.|++|+|||+|.+.+..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 688999999999999998874
No 441
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.93 E-value=0.005 Score=44.83 Aligned_cols=23 Identities=30% Similarity=0.579 Sum_probs=20.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~ 63 (225)
..|++.|++|+|||+|.+.+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 37899999999999999998764
No 442
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.92 E-value=0.0051 Score=45.39 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=20.9
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~ 64 (225)
-.|++.|++|+|||+|.+.+....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 378999999999999999887654
No 443
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.91 E-value=0.0051 Score=44.94 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=20.4
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~ 63 (225)
-.|++.|++|+|||+|.+.+...
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 37889999999999999998864
No 444
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.91 E-value=0.0036 Score=54.55 Aligned_cols=25 Identities=44% Similarity=0.674 Sum_probs=21.3
Q ss_pred CCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910 40 KSNIL-LVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 40 ~~~vL-l~Gp~GtGKT~la~~ia~~~ 64 (225)
.+.++ |.||+|+|||||.+.|+..+
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34566 99999999999999999765
No 445
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.91 E-value=0.0022 Score=48.21 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=18.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~ 63 (225)
.+.|.|++|+|||||.+.++..
T Consensus 28 ~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 28 EVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4669999999999999988643
No 446
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.90 E-value=0.0052 Score=44.66 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.4
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~ 63 (225)
-.|++.|++|+|||+|.+.+...
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 37899999999999999998764
No 447
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.90 E-value=0.0052 Score=45.36 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=19.9
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~ 63 (225)
-.|++.|++|+|||+|.+.+...
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 37889999999999999877754
No 448
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.90 E-value=0.0045 Score=45.59 Aligned_cols=23 Identities=22% Similarity=0.457 Sum_probs=20.4
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~ 63 (225)
..|++.|++|+|||+|.+.+...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47889999999999999998754
No 449
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.90 E-value=0.0051 Score=51.21 Aligned_cols=24 Identities=33% Similarity=0.617 Sum_probs=21.1
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~ 64 (225)
..++|+||||||||+|++.|++..
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cEEEEecCCCCChhHHHHHHHHHH
Confidence 457799999999999999998865
No 450
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.88 E-value=0.0052 Score=45.45 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=20.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~ 63 (225)
.|++.|++|+|||+|.+++...
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6889999999999999999875
No 451
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=95.86 E-value=0.0029 Score=59.07 Aligned_cols=45 Identities=16% Similarity=0.203 Sum_probs=33.1
Q ss_pred ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHH
Q psy5910 5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAK 62 (225)
Q Consensus 5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~ 62 (225)
+..+|.+..++.|.+.+... .+.+-+.++|+.|+|||+||+.+++
T Consensus 128 k~~VGRe~eLeeL~elL~~~-------------d~~RVV~IvGmGGIGKTTLAk~Vy~ 172 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLEL-------------RPAKNVLIDGVLGSGKTWVALDVCL 172 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHC-------------CSSCEEEECCSTTSSHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcc-------------CCCeEEEEEcCCCccHHHHHHHHHH
Confidence 34588888888888766210 1123455999999999999998885
No 452
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=95.85 E-value=0.0054 Score=55.98 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=18.4
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~ 64 (225)
+.+++.||||||||+++..+...+
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 456799999999998776665443
No 453
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.85 E-value=0.0057 Score=44.68 Aligned_cols=22 Identities=23% Similarity=0.375 Sum_probs=19.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~ 63 (225)
.|++.|++|+|||+|.+.+...
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7889999999999999988753
No 454
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.85 E-value=0.0057 Score=45.11 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=20.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~ 63 (225)
.|++.|++|+|||+|.+.+...
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7899999999999999998764
No 455
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.84 E-value=0.0049 Score=45.26 Aligned_cols=22 Identities=23% Similarity=0.486 Sum_probs=19.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~ 63 (225)
.|++.|++|+|||+|.+.+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5889999999999999998753
No 456
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.84 E-value=0.0033 Score=52.90 Aligned_cols=23 Identities=39% Similarity=0.606 Sum_probs=19.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~ 64 (225)
.+.|.||+|+|||||.++++...
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 34499999999999999999743
No 457
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.83 E-value=0.0054 Score=44.75 Aligned_cols=22 Identities=18% Similarity=0.378 Sum_probs=19.9
Q ss_pred CcEEEEcCCCCcHHHHHHHHHH
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAK 62 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~ 62 (225)
..|++.|++|+|||+|.+.+..
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 4788999999999999999884
No 458
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.81 E-value=0.0059 Score=45.09 Aligned_cols=22 Identities=32% Similarity=0.635 Sum_probs=20.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~ 63 (225)
.|++.|++|+|||+|.+.+...
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 7889999999999999999864
No 459
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.81 E-value=0.0057 Score=45.30 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~ 63 (225)
-.|++.|++|+|||+|.+.+...
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 37899999999999999998764
No 460
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.80 E-value=0.0058 Score=45.16 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.1
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~ 64 (225)
-.|++.|++|+|||+|.+.+...-
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 378999999999999999988754
No 461
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.79 E-value=0.0051 Score=45.38 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.2
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~ 63 (225)
..|++.|++|+|||+|.+.+...
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 47899999999999999998753
No 462
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.78 E-value=0.0062 Score=44.96 Aligned_cols=22 Identities=23% Similarity=0.496 Sum_probs=19.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~ 63 (225)
.|++.|++|+|||+|.+.+...
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 6889999999999999888764
No 463
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.77 E-value=0.0064 Score=44.27 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=20.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~ 63 (225)
-.+++.|++|+|||+|.+.+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999988753
No 464
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.76 E-value=0.0063 Score=45.18 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.5
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~ 63 (225)
-.|++.|++|+|||+|.+.+...
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999998864
No 465
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.76 E-value=0.0064 Score=45.30 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=20.2
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~ 63 (225)
..|++.|++|+|||+|.+.+...
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 47889999999999999998754
No 466
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.75 E-value=0.0066 Score=46.17 Aligned_cols=24 Identities=29% Similarity=0.549 Sum_probs=21.0
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~ 64 (225)
..+++.|.+|+|||+++..++...
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 357799999999999999998775
No 467
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.75 E-value=0.0066 Score=44.87 Aligned_cols=22 Identities=23% Similarity=0.563 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~ 63 (225)
.+++.|++|+|||+|.+.+...
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6889999999999999998754
No 468
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.74 E-value=0.012 Score=45.81 Aligned_cols=32 Identities=25% Similarity=0.512 Sum_probs=25.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh--CCCeEEecc
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKII--NVPIIVVDA 73 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~--~~~~~~~~~ 73 (225)
.+++.|.+|+||||++..++..+ +.....++.
T Consensus 16 i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~ 49 (262)
T 1yrb_A 16 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNL 49 (262)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 45589999999999999998776 555555554
No 469
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.73 E-value=0.0045 Score=50.25 Aligned_cols=30 Identities=23% Similarity=0.458 Sum_probs=23.1
Q ss_pred ceeeeCCcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910 35 NIYLEKSNILLVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 35 ~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~ 64 (225)
.+...++-.+|+||+|+|||++..+|.-.+
T Consensus 19 ~l~~~~g~~~i~G~NGsGKS~ll~ai~~ll 48 (322)
T 1e69_A 19 LIGFSDRVTAIVGPNGSGKSNIIDAIKWVF 48 (322)
T ss_dssp EEECCSSEEEEECCTTTCSTHHHHHHHHTS
T ss_pred EEecCCCcEEEECCCCCcHHHHHHHHHHHh
Confidence 344445545599999999999999998654
No 470
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.72 E-value=0.0098 Score=50.56 Aligned_cols=33 Identities=18% Similarity=0.178 Sum_probs=26.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccC
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVVDAT 74 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~ 74 (225)
-+++.|+||+|||++|..+|... +.++.+++..
T Consensus 199 liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 199 FVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 46699999999999998877654 6677777664
No 471
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.72 E-value=0.0069 Score=44.70 Aligned_cols=23 Identities=35% Similarity=0.384 Sum_probs=20.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~ 63 (225)
-.|++.|++|+|||+|.+.+...
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999999853
No 472
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.72 E-value=0.0065 Score=45.33 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=20.9
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~ 64 (225)
..|++.|++|+|||+|++.+...-
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC
Confidence 378899999999999999998643
No 473
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.72 E-value=0.0067 Score=45.26 Aligned_cols=24 Identities=21% Similarity=0.491 Sum_probs=20.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~~ 64 (225)
..|++.|++|+|||+|.+.+....
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 378899999999999999987643
No 474
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.71 E-value=0.0069 Score=44.85 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.6
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~ 63 (225)
-.|++.|++|+|||+|.+.+...
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 37899999999999999998864
No 475
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.71 E-value=0.0069 Score=44.62 Aligned_cols=23 Identities=26% Similarity=0.546 Sum_probs=20.5
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~ 63 (225)
-.|++.|++|+|||+|.+.+...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47899999999999999999764
No 476
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=95.71 E-value=0.0057 Score=50.66 Aligned_cols=28 Identities=25% Similarity=0.471 Sum_probs=22.4
Q ss_pred ceeeeCCcEEEEcCCCCcHHHHHHHHHH
Q psy5910 35 NIYLEKSNILLVGPTGCGKTLMVKTLAK 62 (225)
Q Consensus 35 ~~~~~~~~vLl~Gp~GtGKT~la~~ia~ 62 (225)
.+...++-.+|+||+|+|||++..+|+-
T Consensus 20 ~i~f~~gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 20 RIKFEKGIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEECCSEEEEEEECTTSSHHHHHHHHHH
T ss_pred EEecCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3444455566999999999999999986
No 477
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.71 E-value=0.0069 Score=45.12 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.2
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~ 63 (225)
..|++.|++|+|||+|.+.+...
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 47889999999999999998753
No 478
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.70 E-value=0.0049 Score=49.99 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~ 64 (225)
-++|+|++|+||||+.+.+....
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 45599999999999999999764
No 479
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.70 E-value=0.0067 Score=45.58 Aligned_cols=23 Identities=35% Similarity=0.622 Sum_probs=20.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~ 63 (225)
..|++.|++|+|||+|++.+...
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 37889999999999999988764
No 480
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=95.69 E-value=0.15 Score=41.65 Aligned_cols=19 Identities=26% Similarity=0.384 Sum_probs=16.0
Q ss_pred CcEEEEcCCCCcHHHHHHH
Q psy5910 41 SNILLVGPTGCGKTLMVKT 59 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ 59 (225)
.++++.+|+|+|||..+-.
T Consensus 46 ~~~lv~a~TGsGKT~~~~~ 64 (391)
T 1xti_A 46 MDVLCQAKSGMGKTAVFVL 64 (391)
T ss_dssp CCEEEECSSCSSHHHHHHH
T ss_pred CcEEEECCCCCcHHHHHHH
Confidence 5799999999999986543
No 481
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.68 E-value=0.0051 Score=44.73 Aligned_cols=23 Identities=13% Similarity=0.258 Sum_probs=20.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~ 63 (225)
-.+++.|++|+|||+|.+.+...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36889999999999999998864
No 482
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.68 E-value=0.0069 Score=45.63 Aligned_cols=23 Identities=39% Similarity=0.723 Sum_probs=20.5
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~ 63 (225)
..|++.|++|+|||+|++.+...
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36889999999999999999864
No 483
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.67 E-value=0.0065 Score=46.86 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~ 63 (225)
..|+|+|++|+|||+|.+++...
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHcCC
Confidence 47889999999999999998864
No 484
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.66 E-value=0.007 Score=45.26 Aligned_cols=22 Identities=27% Similarity=0.613 Sum_probs=19.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~ 63 (225)
.|++.|++|+|||+|.+.+...
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999998753
No 485
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.66 E-value=0.0068 Score=45.16 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=19.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~ 63 (225)
.|++.|++|+|||+|.+.+...
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999988753
No 486
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.64 E-value=0.0079 Score=45.27 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=20.9
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910 40 KSNILLVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 40 ~~~vLl~Gp~GtGKT~la~~ia~~~ 64 (225)
...|++.|++|+|||+|...+....
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478899999999999999988643
No 487
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=95.62 E-value=0.014 Score=43.81 Aligned_cols=29 Identities=28% Similarity=0.473 Sum_probs=23.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCCeEEe
Q psy5910 43 ILLVGPTGCGKTLMVKTLAKII---NVPIIVV 71 (225)
Q Consensus 43 vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~ 71 (225)
|.|-|+-||||||.++.+++.+ |.+++..
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 4478999999999999999887 5565544
No 488
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.61 E-value=0.0075 Score=44.63 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=20.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~ 63 (225)
-.|++.|++|+|||+|.+.+...
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 37889999999999999999763
No 489
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.61 E-value=0.0067 Score=44.55 Aligned_cols=23 Identities=43% Similarity=0.593 Sum_probs=19.9
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~ 63 (225)
..+++.|++|+|||+|.+.+...
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999988753
No 490
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=95.60 E-value=0.0078 Score=54.97 Aligned_cols=21 Identities=38% Similarity=0.616 Sum_probs=16.4
Q ss_pred CcEEEEcCCCCcHHHHHHHHH
Q psy5910 41 SNILLVGPTGCGKTLMVKTLA 61 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia 61 (225)
+.+++.||||||||+++..+.
T Consensus 376 ~~~lI~GppGTGKT~~i~~~i 396 (802)
T 2xzl_A 376 PLSLIQGPPGTGKTVTSATIV 396 (802)
T ss_dssp SEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHH
Confidence 356799999999998765444
No 491
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.59 E-value=0.008 Score=45.05 Aligned_cols=23 Identities=30% Similarity=0.588 Sum_probs=20.2
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~~ 63 (225)
..|+++|++|+|||+|...+...
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47889999999999999998753
No 492
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.57 E-value=0.0088 Score=48.97 Aligned_cols=23 Identities=17% Similarity=0.527 Sum_probs=19.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~ 64 (225)
.+.+.|+||+||||+++.++..+
T Consensus 58 ~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 58 RLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 45599999999999999998765
No 493
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.57 E-value=0.008 Score=49.40 Aligned_cols=23 Identities=30% Similarity=0.702 Sum_probs=20.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q psy5910 42 NILLVGPTGCGKTLMVKTLAKII 64 (225)
Q Consensus 42 ~vLl~Gp~GtGKT~la~~ia~~~ 64 (225)
.+.|.|+||+|||||.+++...+
T Consensus 76 ~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 76 RVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 45599999999999999998754
No 494
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.57 E-value=0.0089 Score=45.29 Aligned_cols=28 Identities=29% Similarity=0.592 Sum_probs=22.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh--CCCeEE
Q psy5910 43 ILLVGPTGCGKTLMVKTLAKII--NVPIIV 70 (225)
Q Consensus 43 vLl~Gp~GtGKT~la~~ia~~~--~~~~~~ 70 (225)
|.|-|+.|+||||.++.+++.+ +.+++.
T Consensus 5 I~~EG~dGsGKsTq~~~L~~~L~~~~~v~~ 34 (205)
T 4hlc_A 5 ITFEGPEGSGKTTVINEVYHRLVKDYDVIM 34 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHCCCCEEE
Confidence 4488999999999999999988 444443
No 495
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=95.57 E-value=0.0068 Score=55.26 Aligned_cols=32 Identities=22% Similarity=0.401 Sum_probs=23.9
Q ss_pred ecccceeeeCCc-EEEEcCCCCcHHHHHHHHHHH
Q psy5910 31 LKSKNIYLEKSN-ILLVGPTGCGKTLMVKTLAKI 63 (225)
Q Consensus 31 ~~~~~~~~~~~~-vLl~Gp~GtGKT~la~~ia~~ 63 (225)
..+.++. +.+. ++|+||+|+||||+.|.++..
T Consensus 598 lndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 598 ANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp CEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred eeccccc-CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 4445555 3444 459999999999999999865
No 496
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.55 E-value=0.0075 Score=44.20 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=19.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHHH
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAK 62 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~ 62 (225)
..+++.|++|+|||+|.+.+..
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4788999999999999998875
No 497
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.54 E-value=0.005 Score=44.94 Aligned_cols=21 Identities=38% Similarity=0.619 Sum_probs=18.9
Q ss_pred CcEEEEcCCCCcHHHHHHHHH
Q psy5910 41 SNILLVGPTGCGKTLMVKTLA 61 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia 61 (225)
..|++.|++|+|||+|.+.+.
T Consensus 19 ~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTC
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 478899999999999998876
No 498
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.52 E-value=0.071 Score=41.05 Aligned_cols=30 Identities=17% Similarity=0.352 Sum_probs=20.0
Q ss_pred EEEcCCCCcHHHHHH-HHHHHh--CCCeEEecc
Q psy5910 44 LLVGPTGCGKTLMVK-TLAKII--NVPIIVVDA 73 (225)
Q Consensus 44 Ll~Gp~GtGKT~la~-~ia~~~--~~~~~~~~~ 73 (225)
+++||.|+||||.+- .+.+.. +..++.+..
T Consensus 23 v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp 55 (234)
T 2orv_A 23 VILGPMFSGKSTELMRRVRRFQIAQYKCLVIKY 55 (234)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred EEECCCCCcHHHHHHHHHHHHHHCCCeEEEEee
Confidence 388999999997554 443333 566666653
No 499
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.51 E-value=0.0082 Score=44.15 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=19.8
Q ss_pred CcEEEEcCCCCcHHHHHHHHHH
Q psy5910 41 SNILLVGPTGCGKTLMVKTLAK 62 (225)
Q Consensus 41 ~~vLl~Gp~GtGKT~la~~ia~ 62 (225)
..|++.|++|+|||+|.+.+..
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4788999999999999999884
No 500
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.51 E-value=0.0065 Score=44.98 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=19.9
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHH
Q psy5910 40 KSNILLVGPTGCGKTLMVKTLAK 62 (225)
Q Consensus 40 ~~~vLl~Gp~GtGKT~la~~ia~ 62 (225)
...|++.|++|+|||+|.+.+..
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 34789999999999999988864
Done!